CellProfiler/CellProfiler — Issue #276: RelateObjects error
Author: dlogan
Created: 2012-01-23 20:54:12+00:00
State: open
Labels: current

From a collaborator, Cat Luce:
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There is an error that is popping up in a select few images. Most run just fine but below you'll find the problem as reported in test mode. What should I change do you think? It says it's an error detected during the module RelateObjects.

Cat

Traceback (most recent call last):
File "cellprofiler\gui\pipelinecontroller.pyc", line 1004, in do_step
File "cellprofiler\modules\relateobjects.pyc", line 276, in run
File "cellprofiler\modules\relateobjects.pyc", line 314, in calculate_centroid_distances
File "cellprofiler\modules\relateobjects.pyc", line 442, in get_parents_of
IndexError: arrays used as indices must be of integer (or boolean) type
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The Batch in question is here:
http://imagingweb.broadinstitute.org/batchprofiler/cgi-bin/CellProfiler2.0/CellProfiler/BatchProfiler/ViewBatch.py?batch_id=3492

I have asked her for the pipeline etc, and will add this info when received. She is using svn 1675, but I believe nothing has changed in relateobjects.py since that version