joey711/phyloseq — Issue #61: Add vegdist extension (wrapper) for phyloseq-class & otuTable-class
Author: joey711
Created: 2012-01-19 18:50:12+00:00
State: open
Labels: Feature

These two classes will need an extension for vegdist, so that it can work as it normally does in the vegan package, but without the user needing to worry about the orientation of their abundance matrix, or accessing the otuTable() component if it is an experiment-level (phyloseq-class) object.

Later on, parallelization could be added as well, though some of the methods are fast even on the soil dataset.