joey711/phyloseq — Issue #60: Force sample index orders to match between otuTable and sampleData
Author: joey711
Created: 2012-01-18 23:40:22+00:00
State: open
Labels: Bug, Feature

Whether otuTable has sample indices as rows or columns, the order should match the rownames of the sampleData in a combined object. The validity tests check that the two index sets have the same indices, but the order is not currently checked or enforced.

This should be relatively straightforward to add to the `phyloseq()` constructor, especially considering that, for the time-being, this is only an issue for instances of the `phyloseq-class` that have `sampleData`.