joey711/phyloseq — Issue #58: Add soils reproducibility dataset to examples
Author: joey711
Created: 2012-01-16 23:28:37+00:00
State: open
Labels: Documentation, Feature

From their abstract:
To determine the reproducibility and quantitation of the amplicon sequencing-based detection approach for analyzing microbial community structure, a total of 24 microbial communities from a long-term global change experimental site were examined. Genomic DNA obtained from each community was used to amplify 16S rRNA genes with two or three barcode tags as technical replicates in the presence of a small quantity (0.1% wt/wt) of genomic DNA from Shewanella oneidensis MR-1 as the control. . .

http://www.nature.com/ismej/journal/v5/n8/full/ismej201111a.html

I contacted the authors, and they provided me with some additional files that should be suitable for inclusion. If not, write back to them for additional data. Would be an interesting study to include

Would also be interesting to include an example for addressing the fraction of OTUs expected to be resampled between replicates.