andreyto/mr-mpi-blast — Issue #2: Update classifier code to the current master
Author: andreyto
Created: 2012-01-06 20:12:11+00:00
State: open

1. Implement running in classifier mode for unknown input sequences as a run-time switch to the current generic BLAST mode:
- IIDs are generated for input fragments
- when a classify mode is active, a separate output processing is done that computes per-sequence identity and coverage and add these fields to the standard output fields.
2. The benchmarking variant of the classifier mode does not require additional modifications to the code above, except that the optional flanking size run-time parameter is taken into an account when computing the per-fragment metrics. Create a post-processing python script that merges the classifier output for unknown sequences with position and origin GI fields extracted from the defline index file