CellProfiler/CellProfiler — Issue #252: BatchProfiler Per_Well script fails
Author: dlogan
Created: 2011-12-17 16:48:11+00:00
State: open

Clicking the Per_Well script on this page fails:
http://imagingweb.broadinstitute.org/batchprofiler/cgi-bin/CellProfiler2.0/CellProfiler/BatchProfiler/ViewBatch.py?batch_id=3472

(Note: I also cannot edit the new BatchProfiler files because leek owns them -- can this be changed?)

The output file reports:
******
/broad/tools/dotkit/ksh/.dk_init: line 9: /etc/systype: No such file or directory
/broad/tools/dotkit/ksh/.dk_init: line 10: /etc/archtype: No such file or directory
/broad/tools/dotkit/ksh/.dk_init: line 24: /bash/use: No such file or directory
*****

In the older sqljobs.py, I commented out a couple lines awhile ago, because of a similar problem. See this:
/imaging/analysis/People/imageweb/batchprofiler/cgi-bin/development/CellProfiler_2.0/sql_jobs.py

but as far as I can tell, this still seems to be a problem in this file:
/imaging/analysis/People/imageweb/batchprofiler/cgi-bin/CellProfiler2.0/CellProfiler/BatchProfiler/sql_jobs.py