romanzenka/swift — Issue #18: Parse Scaffold .xml file into a set of tables in a database
Author: romanzenka
Created: 2011-12-15 17:40:13+00:00
State: open

The .xml files need to be parsed and loaded into a database. This would require several steps:

1) make sure the particular .fasta database is properly loaded
2) translate all peptide sequences to a big table of previously seen peptides
3) load the Scaffold .xml file into a set of tables referencing the previously indexed sequences (for storage space reduction)