JaneliaSciComp/msg — Issue #20: Parse gzipped fastq files directly
Author: gregpinero
Created: 2011-12-14 17:54:55+00:00
State: open

It would be nice if msg could work directly from gzipped fastq files. At the moment, i think, we need to unzip files to parse them. it would be better if we could parse gzipped files directly. msg can handle gzipped files for the genome updating (since bwa automatically recognizes if the file is zipped), but our parsing code cannot.