ISA-tools/ISAvalidator-ISAconverter-BIImanager — Issue #35: Validation of metabolights configurations.
Author: pconesa
Created: 2011-12-13 12:03:25+00:00
State: open

Hi Eammon.

Our isatab files based on our configurations do not pass the validation.

Our configuration has "MS Assay Name" as a field, but the validator, somehow is expecting "Assay Name".

I have created a isatab file with ISACreator v1.5.0 and our configurations.
I have used validator 1.4 and the same configurations (ours).

Log file says:

Section.getField("MS Assay Name") returns null.

So, RowSectionParser.parseHeaders throws an exception:
throw new TabValidationException(i18n.msg("unexpected_field_in_section_error", header, sectionId));

(SchemaNode) Schema.children has this:
[
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,

Any idea about what is going on here?