bwallace/OpenMeta-analyst- — Issue #128: subgroup-ma with 
Author: bwallace
Created: 2011-12-08 19:37:28+00:00
State: open

with the renal dataset, run a subgroup MA using 'gauge' as the covariate; run any method. The Manno study will only appear once, in Subgroup ''. The object contains data for it in subgroup 16, too, however (see below).

>> tmp_obj
An object of class "BinaryData"
Slot "g1O1":
numeric(0)

Slot "g1O2":
numeric(0)

Slot "g2O1":
numeric(0)

Slot "g2O2":
numeric(0)

Slot "y":
[1] 0.020833333 0.043209877 0.052208835 0.077922078 0.074666667 0.017647059
[7] 0.145038168 0.029702970 0.065934066 0.048076923 0.002590674 0.003067485
[13] 0.039325843 0.003571429 0.063636364 0.011764706 0.017857143 0.042553191
[19] 0.037854890 0.141337386 0.073604061 0.027777778 0.005385996 0.011257036
[25] 0.047904192 0.047619048 0.046511628 0.050000000 0.033707865 0.004246285
[31] 0.060000000

Slot "SE":
[1] 0.010307399 0.015974761 0.014096804 0.030546449 0.009597848 0.010098050
[7] 0.030765990 0.016892099 0.026014472 0.020977060 0.003658950 0.004331340
[13] 0.014568307 0.001782490 0.013437238 0.011695082 0.012513429 0.020818599
[19] 0.010718738 0.013580597 0.013155069 0.013694377 0.003101164 0.004569642
[25] 0.016525738 0.018971534 0.022708124 0.021794094 0.019130083 0.002996140
[31] 0.023748248

Slot "g1.name":
character(0)

Slot "g2.name":
character(0)

Slot "study.names":
[1] "Carrington" "Waldo" "Pasquariello" "Werner" "Whittier"
[6] "Preda" "Christensen" "Tikkakoski" "Burstein" "Tung"
[11] "Donovan" "Manno" "Bairy" "MacKinnon" "Lin"
[16] "Ori" "Stiles" "Ishikawa" "Ishikawa" "Stratta"
[21] "Eiro" "Hojs" "Hergesell " "Hergesell " "Mendelssohn"
[26] "Voss" "Doyle" "Cozens" "Bondestam" "Manno"
[31] "Maya"

Slot "notes":
character(0)

Slot "years":
integer(0)

Slot "covariates":
[[1]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "gauge"

Slot "cov.vals":
[1] "14" "14" "14" "14" "14" "14" "14" "14" "14" "14" "14" "" "16" "16" "16"
[16] "16" "16" "18" "18" "18" "18" "18" "18" "18" "18" "18" "18" "18" "" ""
[31] ""

Slot "cov.type":
[1] "factor"

Slot "ref.var":
[1] "14"

[[2]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "passes_gte2"

Slot "cov.vals":
[1] "0" "" "0" "1" "" "" "1" "0" "" "1" "1" "" "" "" "1" "1" "" "1" "1"
[20] "1" "1" "1" "1" "1" "" "" "1" "1" "0" "" "0"

Slot "cov.type":
[1] "factor"

Slot "ref.var":
[1] "0"

[[3]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "male_prop"

Slot "cov.vals":
[1] 0.63 0.38 0.66 0.62 0.38 NA 0.56 0.53 0.43 0.62 NA 0.59 0.59 0.60 NA
[16] 0.53 0.63 0.54 0.54 0.62 0.52 0.55 0.63 0.63 NA 0.53 0.43 0.58 0.72 0.59
[31] 0.40

Slot "cov.type":
[1] "continuous"

Slot "ref.var":
[1] "0.63"

[[4]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "Cr"

Slot "cov.vals":
[1] 1.6 2.5 1.7 2.1 2.3 NA NA NA 2.6 NA NA 1.0 NA 2.1 3.4 2.3 2.0 1.2 1.2
[20] 2.1 1.3 NA NA NA NA NA NA 4.7 NA 1.0 1.6

Slot "cov.type":
[1] "continuous"

Slot "ref.var":
[1] "1.6"

[[5]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "SBP"

Slot "cov.vals":
[1] 135 132 NA 129 134 NA NA NA NA NA NA 132 NA NA NA NA NA 131 131
[20] 135 128 NA NA NA NA NA 127 NA NA 132 132

Slot "cov.type":
[1] "continuous"

Slot "ref.var":
[1] "135.0"

[[6]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "Hb"

Slot "cov.vals":
[1] 13.0 11.8 NA NA 11.9 NA NA NA NA NA NA 13.0 NA 11.7 10.9
[16] NA 12.0 12.4 12.4 12.4 NA NA NA NA NA NA NA NA NA 13.0
[31] 12.2

Slot "cov.type":
[1] "continuous"

Slot "ref.var":
[1] "13.0"

[[7]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "arf_prop"

Slot "cov.vals":
[1] NA NA 0.048 NA NA NA NA NA NA NA NA 0.040
[13] NA 0.250 NA 0.117 0.044 NA NA 0.139 NA 0.041 0.133 0.133
[25] NA 0.158 NA 0.210 NA 0.040 NA

Slot "cov.type":
[1] "continuous"

Slot "ref.var":
[1] "NA"

[[8]]
An object of class "CovariateValues"
Slot "cov.name":
[1] "nephrotic_prop"

Slot "cov.vals":
[1] NA NA 0.24 NA NA NA NA NA NA NA NA 0.17 NA NA NA
[16] NA 0.42 0.19 0.19 0.33 NA 0.22 NA NA NA 0.11 NA 0.16 NA 0.17
[31] NA

Slot "cov.type":
[1] "continuous"

Slot "ref.var":
[1] "NA"