chapmanb/biocloudcentral — Issue #1: doesn't run... :-(
Author: agbiotec
Created: 2011-12-01 21:52:09+00:00
State: open

- followed all steps from :
http://bcbio.wordpress.com/2011/11/29/making-next-generation-sequencing-analysis-pipelines-easier-with-biocloudcentral-and-galaxy-integration/

after hitting "Process" in the very last step from within Galaxy pipelines, it simply returns in the main Galaxy and doesn't show any running jobs there. Running qstat after having logged in does not show anything either.

- while logged in I also tried :
ubuntu@ip-10-116-201-41:/export/data/work/2worker-run$ distributed_nextgen_pipeline.py /export/data/galaxy/post_process.yaml /export/data/exome_example/fastq /export/data/exome_example/config/run_info.yaml
Starting manager
.... but it just keeps hanging here forever.....

Where could I pull more data from to help you debug it ?