CellProfiler/CellProfiler — Issue #69: JIRA [IMG-1484] ImageMath errors with certain cropped images from the Align module
Author: thouis
Created: 2011-11-23 20:49:48+00:00
State: open
Labels: current

ImageMath Error:
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Traceback (most recent call last):
File"/cc/release_10953/CellProfiler/cellprofiler/gui/pipelinecontroller.py", line 932, in do_step
File"/cc/release_10953/CellProfiler/cellprofiler/modules/imagemath.py", line 294, in run
ValueError: shape mismatch: objects cannot be broadcast to a single shape
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When I change the upstream Align from"Crop to aligned region" to"Keep size", it works fine.
Input folder (On psych_neuro - let me know if you need access):
/Volumes/psych_neuro/screen_data/screen_data/Ank3RNAiFolder/Cellomics Images/PANDORA_110711150001
pipeline:
\\Oxygen\psych_neuro\people\cluce\Cellprofiler\pipelinesPIPE34_06_23_2011_Ank3RNAi_AnyNumberOfSites.cp
Most images are fine. However G04 site 1 gives the above error.

Original reporter: dlogan
Jira link: https://jira.broadinstitute.org/browse/IMG-1484
Fix version: Current
Assignee: leek