bg7/BG7 — Issue #14: tool for formatting input genome fasta file
Author: marina-manrique
Created: 2011-11-23 11:40:25+00:00
State: open
Labels: improvement

@pablopareja It would be good to format the input genome FASTA file so the FASTA file to annotate has always the same header structure, @rtobes and I have decided this could be an appropriate header

>CONTIG_ID|Former header

where CONTIG_ID is the ProjectName+6 chars number, for example ECO000001 ECO000002

Doing this way you could always get the contig ID splitting by '|' and getting the fist token.

Besides the formatted FASTA file it'd be good to have a tsv file with the CONTIG_ID and the corresponding former header