mkjensen/barriers — Issue #5: Complete the "barrier forest format"
Author: mkjensen
Created: 2011-11-23 15:08:27+00:00
State: open

Currently, the "barrier forest format" (.bf) is simply a serialization of an instance of the BarrierForest class such that conformations can be extracted. It is not even possible to (re)generate the PostScript representation of the barrier forest even though that feature is easily implemented.

For the walking heuristics, an idea is to store the minima used such that new forests can be constructed using different heuristics and/or parameters.

For molecular dynamics simulations, an idea is to store all the conformations left after pruning such that forests based on different neighbor thresholds can be constructed.