CellProfiler/CellProfiler — Issue #240: JIRA [IMG-47] Montage of cells
Author: thouis
Created: 2011-11-23 20:50:47+00:00
State: open

Randomly sample from a set of cells as pipeline progresses, to facilitate creating a montage of"interesting" cells. Note that this can be done as the pipeline progresses (maybe not so much with the cluster) with reservoir sampling. They can probably be stored in the output directory, and composited at the end, or stored in the pipeline and linked via the Crop and Tile modules. Each channel would need to be Cropped individually, and then overlaid with GrayToColor if desired. The Crop module would have to be modified to chop out each individual cell based on X Y location and then feed the result to Tile (or to Save Images, if desired).

Original reporter: leek
Jira link: https://jira.broadinstitute.org/browse/IMG-47
Assignee: leek