CellProfiler/CellProfiler — Issue #140: JIRA [IMG-1079] Template matching
Author: thouis
Created: 2011-11-23 20:50:20+00:00
State: open
Labels: current

---------- Forwarded message ----------
From: Misselwitz Benjamin<benjamin.misselwitz@micro.biol.ethz.ch>
Date: Sun, Aug 17, 2008 at 11:09
Subject: MatchTemplate
To:thouis@broad.mit.edu
Hi Ray,
here, as promised the MatchTemplateTurbo module. I hope you can adopt
it to the new CP-format.I made some very minor changes after our
discussion (getting rid of the bwlabel command, I was wrong about the
imageprops, they follow the object numbers in the FinalLabelMatrix
image). I hope, you will not find any bugs... Please note, that we did
not test all of the different shapes which can be defined in the menu
for the Inner and OuterObjects. I am curious about the improvements
you can still make!
The StandardCorrelation function was developed by Peter Horvarth, he
is happy to contribute his code. The localMaximum function can be
found at:www.mathworks.com/matlabcentral/files/14498/localMaximum.m
I do not know anything about licences... it is up to your judgement
whether you can use it.
Of course, as we discussed one year ago, I am happy to donate my code.
If you need images for testing I have to discuss this with my
collaborator in Basel.
Peter made another nice suggestion: He suggested to include the option
to load a real image, or perhaps many images, instead of the
ring-matrix. I did not have time to implement this.
I also include my MergeTemplate module... The idea was to screen for
rings of different sizes and later merge the results, whereby the
"first" ring (meaning first defined in the MergeTemplate module) would
replace the second or third, if the different size rings would
overlap. Against my advise, my collaborator in Basel refuses to do
this :-)
apparently, one ring is good enough... but the module should work.
Include this or not in CP as you see fit.
I enjoyed or discussion a lot! Thank you for all your suggestions. We
hope to meet you soon again in Zurich!
cheers, Benjamin

Original reporter: mbray
Jira link: https://jira.broadinstitute.org/browse/IMG-1079
(Original JIRA has attachments.)
Fix version: Current
Assignee: mbray