CellProfiler/CellProfiler — Issue #63: JIRA [IMG-1511] BatchProfiler says jobs Complete, but jobs still in RUN state, and no txt_output files available
Author: thouis
Created: 2011-11-23 20:49:46+00:00
State: open
Labels: current

See this output for an example:
http://imagingweb.broadinstitute.org/batchprofiler/cgi-bin/CellProfiler2.0/CellProfiler/BatchProfiler/ViewBatch.py?batch_id=3306
I used the updated BatchProfiler (http://imagingweb.broadinstitute.org/batchprofiler/cgi-bin/CellProfiler2.0/CellProfiler/BatchProfiler/NewBatch.py) on SVN 11429.
Output dir: /imaging/analysis/2010_05_25_Synapse_Formation_Nieland_Bernardo_Sabatini_Lab_HMS/2011_01_25_SynapseScreen_1_2/Analysis/test_G2p8_P2p4_S1p0_11429
I have seen this before with the old, pre-HF5 BatchProfiler, and as soon as I kill the jobs manually, the txt_output files appear??

Original reporter: dlogan
Jira link: https://jira.broadinstitute.org/browse/IMG-1511
Fix version: Current
Assignee: leek

**Comment from leek on Tue, 30 Aug 2011 16:20:31 -0400:**
I'm moving this to"Next". I'm modifying Run_ImageJ to bring it in line with ImageJ 2.0. I'll probably handle this as part of it.