brainstorm/bcbb — Issue #70: fix write access to seq reference directory
Author: percyfal
Created: 2011-11-13 10:17:19+00:00
State: open

The new tool-data config uses reference files in the biodata directory. Picard needs to create a dict file from the sequence file (e.g. hg19.fa). See function picard_index_ref in bcbio.broad.picardrun.

Solution: write access to seq reference directory or directory owner creates dict files where appropriate