chapmanb/bcbb — Issue #43: Tests not passing with v0.2 & messaging
Author: b97pla
Created: 2011-11-08 09:54:05+00:00
State: open

Hi Brad,

I'm having problems getting the tests to pass for my (customized) version of bcbb, which is based on your 0.2 version. The error message I get is that the required files cannot be found, e.g.:

ValueError: Did not find correct files for /path/to/bcbb/nextgen/tests/data/automated/../110106_FC70BUKAAXX 1 FC70BUKAAXX []

Doing an ls of this path gives:

ls /path/to/bcbb/nextgen/tests/data/automated/../110106_FC70BUKAAXX
1_110106_FC70BUKAAXX_1_fastq.txt
1_110106_FC70BUKAAXX_2_fastq.txt
2_110106_FC70BUKAAXX_1_fastq.txt
2_110106_FC70BUKAAXX_2_fastq.txt
3_110106_FC70BUKAAXX_fastq.txt

This is only an issue when setting "num_cores: messaging", the tests pass fine when using e.g. "num_cores: 8" on the same code.

Does this ring a bell? Can you think of a reason why the files are found ok in the multicore mode but not when using the distributed mode?

Thanks
/Pontus