ModelSEED/Model-SEED-core — Issue #75: Model loading
Author: alikpel
Created: 2011-11-01 16:55:43+00:00
State: open

After successful model loading

./fba-fva -model iJR904
doesn't work

Error log :

> ModelDriver encountered an unrecoverable error:

""ModelSEED::FIGMODEL"" at /specific/disk1/home/alexnade/Model-SEED-core/lib/ModelSEED/FIGMODEL.pm line 139
ModelSEED::FIGMODEL::FIGMODELERROR('ModelSEED::FIGMODEL', 'Model iJR904 not found in database!') called at /specific/disk1/home/alexnade/Model-SEED-core/lib/ModelSEED/ModelDriver.pm line 5644
ModelSEED::ModelDriver::fbafva('ModelSEED::ModelDriver=HASH(0x3c1a1a8)', 'fbafva', 'HASH(0x3bf5c08)') called at /specific/disk1/home/alexnade/Model-SEED-core/lib/ModelSEED/ModelDriver.pl line 87
main::__ANON__() called at /usr/share/perl5/Try/Tiny.pm line 76
eval {...} called at /usr/share/perl5/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x3c09dc0)', 'Try::Tiny::Catch=REF(0x3c0e158)') called at /specific/disk1/home/alexnade/Model-SEED-core/lib/ModelSEED/ModelDriver.pl line 91
require /specific/disk1/home/alexnade/Model-SEED-core/lib/ModelSEED/ModelDriver.pl called at /specific/disk1/home/alexnade/Model-SEED-core/config//ModelSEEDbootstrap.pm line 20
main::run() called at -e line 3

> Model-SEED-core revision: a3c51c43c7a23fd5a58c2bcfb9adba1c1b860dbc

My Configuration file:

[Database]
# type is either sqlite or mysql
type=sqlite

# required for sqlite
filename=/specific/disk1/home/alexnade/Model-SEED-core/data/ModelDB/ModelDB.db

# required for mysql
# username=seed
# password=seedxhs
# host=localhost
# socket=/var/run/mysqld/mysqld.sock
# port=3306

[Optional]
dataDirectory=/specific/disk1/home/alexnade/Model-SEED-core/data/
# admin_users=admin1,admin2

[Optimizers]
includeDirectoryGLPK=/usr/lib/
libraryDirectoryGLPK=/usr/include/
#includeDirectoryCPLEX=/usr/local/lib/cplex121/include/
#libraryDirectoryCPLEX=/usr/local/lib/cplex121/lib/x86-64_sles9.0_3.3/static_pic/
#licenceDirectoryCPLEX=/usr/ilog/ilm/

Tnx,
Alik