ModelSEED/Model-SEED-core — Issue #73: Error during install
Author: linsalrob
Created: 2011-10-31 19:39:55+00:00
State: open

Still not getting install to work. This is on a relatively clean 64-bit linux with no FIG system available.

redwards@goldeneye:/data/ModelSeed$ git pull
Already up-to-date.
redwards@goldeneye:/data/ModelSeed$ cat config/MySettings.config
[Database]
# type is either sqlite or mysql
type=sqlite

# required for sqlite
filename=/data/ModelSeed/databases/db.sqllite

# required for mysql
# username=
# password=
# host=
# socket=
# port=

[Optional]
# dataDirectory==/data/ModelSeed/data/

[Optimizers]
# # admin_users=admin1,admin2: this configuration is no longer in use and can be deleted
includeDirectoryGLPK=/usr/include
libraryDirectoryGLPK=/usr/lib
# includeDirectoryCPLEX=
# libraryDirectoryCPLEX=
# licenceDirectoryCPLEX=
redwards@goldeneye:/data/ModelSeed$ ./bin/ms-config load config/MySettings.config

Your configuration file was adjusted based on changes made to the installation process. Please check the file!

[: 4: unexpected operator
g++ -O3 -fPIC -fexceptions -DNDEBUG -DIL_STD -DILOSTRICTPOD -DLINUX -I../Include/ -DNOSAFEMEM -DNOBLOCKMEM -I/usr/include -o /data/ModelSeed/software/mfatoolkit/Linux/mfatoolkit /data/ModelSeed/software/mfatoolkit/Source/driver.o /data/ModelSeed/software/mfatoolkit/Source/MFAProblem.o /data/ModelSeed/software/mfatoolkit/Source/CPLEXapiEMPTY.o /data/ModelSeed/software/mfatoolkit/Source/SCIPapi.o /data/ModelSeed/software/mfatoolkit/Source/GLPKapi.o /data/ModelSeed/software/mfatoolkit/Source/LINDOapiEMPTY.o /data/ModelSeed/software/mfatoolkit/Source/SolverInterface.o /data/ModelSeed/software/mfatoolkit/Source/Species.o /data/ModelSeed/software/mfatoolkit/Source/Data.o /data/ModelSeed/software/mfatoolkit/Source/InterfaceFunctions.o /data/ModelSeed/software/mfatoolkit/Source/Identity.o /data/ModelSeed/software/mfatoolkit/Source/Reaction.o /data/ModelSeed/software/mfatoolkit/Source/GlobalFunctions.o /data/ModelSeed/software/mfatoolkit/Source/AtomCPP.o /data/ModelSeed/software/mfatoolkit/Source/UtilityFunctions.o /data/ModelSeed/software/mfatoolkit/Source/AtomType.o /data/ModelSeed/software/mfatoolkit/Source/Gene.o /data/ModelSeed/software/mfatoolkit/Source/GeneInterval.o /data/ModelSeed/software/mfatoolkit/Source/stringDB.o -L/usr/lib -lglpk
""Unable to find database configuration for ModelDB USERS"" at /data/ModelSeed/lib/ModelSEED/FIGMODEL.pm line 136
ModelSEED::FIGMODEL::FIGMODELERROR('Unable to find database configuration for ModelDB USERS') called at /data/ModelSeed/lib/ModelSEED/FIGMODEL/FIGMODELdatabase.pm line 158
ModelSEED::FIGMODEL::FIGMODELdatabase::get_object_manager('ModelSEED::FIGMODEL::FIGMODELdatabase=HASH(0x28c6d28)', 'user') called at /data/ModelSeed/lib/ModelSEED/FIGMODEL/FIGMODELdatabase.pm line 272
ModelSEED::FIGMODEL::FIGMODELdatabase::sudo_get_objects('ModelSEED::FIGMODEL::FIGMODELdatabase=HASH(0x28c6d28)', 'user', 'HASH(0x28c6a10)') called at /data/ModelSeed/lib/ModelSEED/FIGMODEL/FIGMODELdatabase.pm line 298
ModelSEED::FIGMODEL::FIGMODELdatabase::get_objects('ModelSEED::FIGMODEL::FIGMODELdatabase=HASH(0x28c6d28)', 'user', 'HASH(0x28c6a10)') called at /data/ModelSeed/lib/ModelSEED/FIGMODEL/FIGMODELdatabase.pm line 249
ModelSEED::FIGMODEL::FIGMODELdatabase::get_object('ModelSEED::FIGMODEL::FIGMODELdatabase=HASH(0x28c6d28)', 'user', 'HASH(0x28c6a10)') called at /data/ModelSeed/bin/../lib/ModelSEED/ModelSEEDScripts/ms-config.pl line 392