ekg/freebayes — Issue #20: 0.94 GQ=nan at complex sites
Author: jamescasbon
Created: 2011-10-28 10:33:26+00:00
State: open

Just testing 0.94 and I see nan at complex sites.

For example

0/1:nan:4:1:20:1,0,1,0,0,0,0:32,0,29,0,0,0,0:-9.42667,-6.85603,-8.30667,-9.7277,-8.6077,-11.1925,-7.14103,-6.00103,-8.8877,-8.58667,-9.7277,-8.6077,-11.1925,-8.8877,-11.1925,-9.7277,-8.6077,-11.1925,-8.8877,-11.1925,-11.1925,-9.7277,-8.6077,-11.1925,-8.8877,-11.1925,-11.1925,-11.1925,-9.7277,-8.6077,-11.1925,-8.8877,-11.1925,-11.1925,-11.1925,-11.1925