hitz/RegulomeDB — Issue #4: Missing page for SNPs without dbSNP IDs
Author: euriehong
Created: 2011-10-20 22:00:11+00:00
State: open

When a SNP doesn't have a corresponding dbSNP ID the score links to snp/n/a instead of a coordinate to display information for that particular base and gives an error.

Examples that give this error:

chrX:146993388-146993388
chr14:100705102-100705102
chrX:55041618-55041618
chrY:9951638-9951638

Alan: The issue is right here:
https://github.com/hitz/RegulomeDB/blob/master/lib/Regulome/RDB.pm#L98

I think it is because of this line also:
https://github.com/hitz/RegulomeDB/blob/master/lib/Regulome/SNP.pm#L22

Ben: The reason that chrx/nnn doesn't work is because I forgot to case-desensitise it.