joey711/phyloseq — Issue #37: Add doc describing where to find relevant QIIME files
Author: joey711
Created: 2011-10-20 01:07:00+00:00
State: open
Labels: Documentation

A default run of the QIIME pipeline will place the 3 or 4 desired output files in different directories.

The big phyloseq vignette (not the basics_vignette included in the package), includes a figure showing the directory structure and where to find the appropriate files.

Make a reference to this in the function documentation, and update the function names in the big vignette, and small one if it happens to mention this as well. readQiime() has been renamed to import_qiime( ).