ModelSEED/Model-SEED-core — Issue #47: GapFilling in local environment
Author: samseaver
Created: 2011-10-10 19:24:10+00:00
State: open

I'm getting a generic error:

`StringDBTable:loadFromFile:could not open table file
StringDBTable:get_object:no hash exists for query attribute
StringDBTable:get_object:no hash exists for query attribute`

It seems that StringDB.cpp in mfatoolkit is getting the wrong filename.

After a bit of debugging, I've found that the command that is run is:

`/Users/seaver/Software/ModelSEEDCore/software/mfatoolkit/bin/mfatoolkit resetparameter "MFA input directory" /Users/seaver/Software/ModelSEEDCore/data/ReactionDB/ parameterfile "../Parameters/ProductionMFA.txt" parameterfile "../Parameters/GapFilling.txt" parameterfile "/Users/seaver/Software/ModelSEEDCore/data/ReactionDB/MFAToolkitOutputFiles/2098275/CompleteGapfillingParameters.txt" parameterfile "/Users/seaver/Software/ModelSEEDCore/data/ReactionDB/MFAToolkitOutputFiles/2098275/AddnlFBAParameters.txt" LoadCentralSystem "/Users/seaver/Software/ModelSEEDCore/data/ReactionDB/MFAToolkitOutputFiles/2098275/iJR904.45632.tbl" > "/Users/seaver/Software/ModelSEEDCore/logs/fba-2098275.log"`

and its attempting to run this command from

`/Users/seaver/Software/ModelSEEDCore`

Its my belief that it cannot find some of the parameter files properly.