jstjohn/SimSeq — Issue #2: Quality Error Spectrum
Author: sari-khaleel
Created: 2011-10-09 04:50:45+00:00
State: open

Hi Again John,
I am trying to manipulate the error rates of simulated errors. I see that you've done that for the SimSeqNBProject using error_profile.txt (https://github.com/jstjohn/SimSeq/blob/master/SimSeqNBProject/test/error_profile.txt).

Can you briefly explain:
1. How to use error_profile.txt with SimSeq
2. How the "Mutation Spectrum" and "Quality Histograms" rows work in error_profile.txt

Thanks!
Sari