meren/viamics — Issue #7: BLAST analysis needs to have a sample ID
Author: theJohnnyBrown
Created: 2011-10-08 20:26:51+00:00
State: open

Allow users to set a minimum blast %-similarity. This would allow us to count only the fasta sequences that closely match our known sequences (So for example, we would only count sequences as matching a known sequence if the % similarity was ≥97%, or ≥99%. Perhaps the minimum % similarity would be something we could select/alter within the framework as needed. Currently, every sequence gets assigned to its best-match in Marcelas Vaginal-sequence-blast database regardless of its percent similarity. Along with all this, we would like to be able to then examine the remaining sequences that didn't meet the minimum % similarity, find out what they are, name them, and then add the sequence/name to the blast database to count them in future analyses.