bpinsard/nipype — comment on commit 1b934e370dd01b5bc980557b89c47fe0ce669add
File:  line 0
By bpinsard:

yes creating a bath with all three and watching the .m code gives:
matlabbatch{1}.spm.spatial.realign.estimate.data = {};
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.quality = 0.9;
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.sep = 4;
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.fwhm = 5;
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.rtm = 1;
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.interp = 2;
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.wrap = [0 0 0];
matlabbatch{1}.spm.spatial.realign.estimate.eoptions.weight = '';
matlabbatch{2}.spm.spatial.coreg.estimate.ref = '';
matlabbatch{2}.spm.spatial.coreg.estimate.source = '';
matlabbatch{2}.spm.spatial.coreg.estimate.other = {''};
matlabbatch{2}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';
matlabbatch{2}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];
matlabbatch{2}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];
matlabbatch{2}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];
matlabbatch{3}.spm.spatial.normalise.est.subj = struct('source', {}, 'wtsrc', {});
matlabbatch{3}.spm.spatial.normalise.est.eoptions.template = '';
matlabbatch{3}.spm.spatial.normalise.est.eoptions.weight = '';
matlabbatch{3}.spm.spatial.normalise.est.eoptions.smosrc = 8;
matlabbatch{3}.spm.spatial.normalise.est.eoptions.smoref = 0;
matlabbatch{3}.spm.spatial.normalise.est.eoptions.regtype = 'mni';
matlabbatch{3}.spm.spatial.normalise.est.eoptions.cutoff = 25;
matlabbatch{3}.spm.spatial.normalise.est.eoptions.nits = 16;
matlabbatch{3}.spm.spatial.normalise.est.eoptions.reg = 1;