Charles Ofria. Charles A. Ofria is a professor in the Department of Computer Science and Engineering at Michigan State University. He is the director of the Digital Evolution (DEvo) Lab and the BEACON Center for the Study of Evolution in Action.

Early life and education 
Ofira is the son of the late Charles Ofria, who developed the first fully integrated shop management program for the automotive repair industry. He attended Stuyvesant High School and graduated from Ward Melville High School in 1991. He earned a B.S. in Computer Science, Pure Mathematics, and Applied Mathematics from Stony Brook University in 1994. He completed a Ph.D. in Computation and Neural Systems at the California Institute of Technology in 1999.

Career 
His research focuses on the relationship between computer science and Darwinian evolution. He is one of the original designers of Avida, an artificial life software platform used to study the evolutionary biology of self-replicating digital organisms. Avida was initially developed at Caltech in 1993 by Ofria, Chris Adami and C. Titus Brown and remains under active development in his Digital Evolution Lab at Michigan State University.

Awards and Recognition 
Ofria has received several awards, including:

 NSF CAREER Award (2007)
 Withrow Excellence Award for Teaching (2010) and Research (2006, 2016)
 William J. Beal Outstanding Faculty Award (2017)
 Fellow of the American Association for the Advancement of Science (2022)

Selected publications

Journal articles 
 Clune J, Pennock RT, Ofria C, Lenski RE (2012) Ontogeny tends to recapitulate phylogeny in digital organisms" The American Naturalist 180: E54–E63. (pdf)
 Clune J, Goldsby HJ, Ofria C, and Pennock RT (2011) Selective pressures for accurate altruism targeting: Evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory. Proceedings of the Royal Society. 278: 666-674.  (PDF)
 Clune J, Stanley KO, Pennock RT, Ofria C (2011) On the performance of indirect encoding across the continuum of regularity. IEEE Transactions on Evolutionary Computation. 15(3): 346-367. (PDF)
 Clune J, Misevic D, Ofria C, Lenski RE, Elena SF, and Sanjuán R. Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes
 Ofria C, Huang W and Torng E. On the gradual evolution of complexity and the sudden emergence of complex features
Elena SF, Wilke CO, Ofria C, and Lenski RE. Effects of population size and mutation rate on the evolution of mutational robustness
Ostrowski E, Ofria C, and Lenski RE, Ecological specialization and adaptive decay in digital organisms
Lenski RE, Barrick JE, Ofria C. Balancing Robustness and Evolvability
Misevic D, Ofria C, and Lenski RE. Sexual reproduction reshapes the genetic architecture of digital organisms

Publications on Avida 
 R. E. Lenski, C. Ofria, T. C. Collier, C. Adami (1999). Genomic Complexity, Robustness, and Genetic Interactions in Digital Organisms.  Nature 400:661-664.  Abstract
 C. Adami, C. Ofria, and T.C. Collier (2000). Evolution of biological complexity. "Proceedings of the National Academy of Sciences" 97:4463-4468. Abstract
 C. O. Wilke, J. L. Wang, C. Ofria, R. E. Lenski, and C. Adami (2001). Evolution of Digital Organisms at High Mutation Rate Leads To Survival of the Flattest. Nature 412:331-333 Abstract.
R. E. Lenski, C. Ofria, R. T. Pennock, and C. Adami (2003). The Evolutionary Origin of Complex Features. Nature 423:139-145. Abstract
 S.S. Chow, C.O. Wilke, C. Ofria, R. E. Lenski, and C. Adami (2004). Adaptive Radiation from Resource Competition in Digital Organisms. Science 305:84-86 Abstract.

References

External links
Avida Software
Avida-ED Project,  led by Robert T. Pennock
An Avida Developer's Site
The Evolutionary Origin of Complex Adaptive Features  2003 Nature Paper
2010 Podcast with Carl Zimmer in Microbe WORLD
Ofria's Publications on Google Scholar Citations

Living people
American evolutionary biologists
Researchers of artificial life
Michigan State University faculty
Ward Melville High School alumni
California Institute of Technology alumni
Stony Brook University alumni
1973 births
Stuyvesant High School alumni