# OmniBioAI SIF Images 🧬

500+ native ARM64 Singularity (SIF) container images for bioinformatics,
built on NVIDIA DGX (aarch64).

## Tool Categories

| Category | Tools |
|---|---|
| Genomics & Alignment | BWA, STAR, HISAT2, Minimap2, Bowtie2 |
| Variant Calling | GATK, DeepVariant, Clair3, Mutect2 |
| RNA-seq | Salmon, Kallisto, DESeq2, edgeR |
| Single Cell | Seurat, Scanpy, Cell Ranger, Harmony |
| Epigenomics | MACS2, deepTools, Bismark |
| Metagenomics | Kraken2, MetaPhlAn, QIIME2 |
| Proteomics | MaxQuant, MSFragger, DIA-NN |
| Structural Biology | AlphaFold2, ColabFold, ESM2 |
| ML/DL | PyTorch, TensorFlow, JAX, sklearn |
| Drug Discovery | DiffDock, GNINA, RFdiffusion |
| Population Genetics | PLINK2, ADMIXTURE, SHAPEIT5 |

## Usage

# Download a SIF file

```
huggingface-cli download man4sihg/omnibioai-sif-images \
  bwa_arm64.sif --repo-type dataset
```
# Run with Singularity

```
singularity exec bwa_arm64.sif bwa mem ref.fa reads.fastq
```

## Part of OmniBioAI Studio

🌐 Website: https://omnibioai.org

📦 Platform: https://github.com/man4ish/omnibioai-studio

## Architecture
- All images: native ARM64/aarch64
- Built on: NVIDIA DGX Spark
- Format: Singularity SIF

## Stats
- 500+ SIF images
- 276GB+ total size
- 654+ downloads last month
- Updated: July 2026

## License
Apache 2.0
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