nyuuzyou/wikis huggingface dataset:
Marine WG 2009

===CSDMS Marine Working Group meeting, February 25-26, 2009===
Date: February 25-26, 2009
Location: Charlottesville, VA, USA
Host: University of Virginia
==== Introduction ====
The Coastal and Marine Working Groups will coordinate their meetings with each other carving out joint and separate sessions. The meeting will begin at 9:00 AM on both February 25 and 26th. It will end around 4:00 PM on February 26. 
Patricia Wiberg, Chair of the Marine WG, and Brad Murray, Chair of the Coastal WG, are looking for broad representation and input to brainstorm proof-of-concept modeling projects to highlight, and discuss which models the Working Groups should prioritize as they move towards expanding the CSDMS model repository. The meeting will also feature presentations from the CSDMS Executive Director, James Syvitski, and CSDMS Software Engineer, Eric Hutton, from the CSDMS Integration Facility in Boulder, Colorado. They will present recent CSDMS organizational and model-linking-architecture development, and how to use CSDMS tools. In addition, there will be workshop-style time on February 26th, for members to work on getting their own codes into the form appropriate for inclusion in the CSDMS toolbox, or to help make progress getting priority models form the community included. Please follow the link below for a more detailed agenda.
==== Circulars and Program====
This is a joint meeting with the Coastal Working Group. Please follow (pdf) to view the combined agenda.
==== Talks ====
Presentations given during the Marine Working Group meeting:
|-
| class="presentations_col1"| James Syvitski
| class="presentations_col2"| CSDMS Organizational Update
| class="presentations_col3"| 
|-
| class="presentations_col1"| Eric Hutton
| class="presentations_col2"| Creating Shareable Models
| class="presentations_col3"| ppt | 
|-
| class="presentations_col1"| Eric Hutton
| class="presentations_col2"| Overview and Demonstration of Linking Models with the Community Surface Dynamics Modeling System
| class="presentations_col3"| zip | 
|}
==== Final Meeting Report ====
The Marine Working Group final summarizes the main discussions during our February 25 - 26, 2009, meeting in Charlottesville, VA.
Mathematical Modeling of Earth’s Dynamical Systems

=== Mathematical Modeling of Earth's Dynamical Systems ===
 300px | right
By: Slingerland, Rudy and Kump, Lee. Princeton University Press, 2011. ISBN: 978-0-691-14513-3
Princeton University Press
The new textbook: “Mathematical Modeling of Earth's Dynamical Systems: A Primer” by Slingerland and Kump helps earth scientists build essential skills to represent Earth surface processes with mathematical and computational models. 
The book aims at upper-level undergraduate students, graduate students, and scientists who want to learn how to abstract complex earth systems into sets of dynamic equations. It is clear that the authors do aim at an audience that is familiar with the principles of physics, chemistry, and geology, and expect some background in differential and integral calculus. But the authors stress that little prior modeling experience is needed to use this book; they want to instill a philosophy of science that values quantification as a way of gaining insight. 
That philosophy rings true. The authors step aspiring modelers systematically through quantitative problem solving process. Firstly, get the physical picture clear while recognizing domains of interest and key factors, then write down the mathematical laws, be aware of the restrictive assumptions, check your units and boundary conditions and lastly verify, validate and solve your model. 
Various relevant examples of processes and systems are provided with increasing complexity over the chapters. Slingerland and Kump offer problems over the entire Earth System Science domain in choosing groundwater flow, coastline evolution, sediment transport, radioactive decay, and carbon flux modeling problems as their rich set of examples. Every chapter has modeling assignments for eager modelers to try their newly acquired insight, or for teaching faculty to assign to their students.
MeetingStats2019

==Pre-conference events ==
Clinic 	Current count	Should close at
HPC workshop 	 	
Software Carpentry Workshop 	 	
Quantifying Uncertainty in Earth Systems	 	
==Clinics Day 1==
__NOTOC__
Clinic 	Current count	Should close at
Morphological Modeling - Delft3D Flex Mesh 	 	30 (closed)
BMI Live! 	 	
Pangeo - Scalable Geoscience Tools Python 	 	
Developing and Teaching Interactive Sedimentology	 	25
==Clinics Day 2==
Clinic 	Current count	Should close at
PyMT - The CSDMS Python Modeling tool	 	40 (closed)
Hydroshare - Data 	 	
ADCIRC 	 	
Model Calibration with Dakota 	 	
==Clinics Day 3==
Clinic 	Current count	Should close at
CUDA-enabled DES3D 	 	
Deep Neural Networks Classification	 	30 (closed)
SALib - Model Sensitivity Analysis 	 	
Making models - Data FAIR 	 	
==Download of full registration==
__NOCACHE__
Member info

= Membership information =
Benefits of membership in one or more working groups or focus research groups include:
* You are part of a family of experts sharing research;
* Advantages in staying current within a community taking Earth Sciences to the next level;
* Competitive funding opportunities - better integrated proposals;
* Improved knowledge of available models for education and application;
* Recognized service in an interesting and new field of interdisciplinary science;
* Better and faster penetration of one's numerical advances, data and simulation products;
* Closer interaction with a wide variety of industrial and NGO partners and federal agencies, with possible spin-off funding opportunities;
* Better academic and public recognition for code development;
* Access to the CSDMS High Performance Computational Resources;
* Increased outreach and knowledge transfer opportunities.
Tasks of the CSDMS Working Groups and Focus Research Groups
* Represent the Community knowledge base and state-of-the-science;
* Know the Community of practitioners and experts including ongoing funded projects and developing opportunities;
* Foster interdisciplinarity within and between CSDMS working groups;
* Decide what processes are in their disciplinary toolkit;
* Identify gaps in knowledge and areas where numerical tools need to be developed;
* Create and manage the various environmental process modules related to their discipline;
* Ensure quality control for the algorithms and modules for their area of expertise (benchmark testing, model validation/verification);
* Ensure adequacy of supporting boundary conditions and boundary initializations;
* Set scientific modeling priorities for their discipline;
* Make recommendations for resource prioritization;
* Stimulate proposals and input from the community;
* Facilitate the movement of these priorities up the hierarchy from technology group to steering committee;
* Coordinate the evaluation of numerical codes according to interoperability, scientific contribution and technical documentation;
* Address the CSDMS proof-of-concept challenges;
* Provide community continuity to meet long-term CSDMS objectives.
Model download portal

CSDMS maintains a code and metadata repository for numerical models and scientific software tools. The CSDMS Model Repository, initialized in 2009, now holds open source models and tools. Use the dialog below to select your set of models.
Note: Some of the open-source code is made available through other community portals. These portals offer much more specific information. To download the code(s) you may be asked to register as a user at their portal. By registering you will receive updates on new releases and other community information. Your registration will help the developers demonstrate to funders the size of their model's community. If you have problems getting access to this open-source code, please let us know CSDMSsupport@Colorado.edu.
Model repository versions

__NOTOC__
=Model repository versions=
CSDMS uses the open source version control system, Subversion to maintain model repositories. The base of every repository contains the usual trunk, tags, and branches directories.
==trunk==
The trunk contains up-to-date versions of model source code that developers have submitted. Because this is the "main line" of development, keep in mind that the trunk may be used for active development and so could contain unstable code.
==tags==
A tag is just a snapshot of a project in time. A model developer will often tag a particular snapshot with a human friendly name, such as release-1.0 (or a date, of just a version number). 
==branches==
A branch is a line of development parallel to the trunk. Branches are often created for one of two reasons:
# to make larger, experimental or disrupting changes without annoying users working on the trunk or
# to maintain a mainentance line of development for older project releases.
Modeling Uncertainty EarthSciences

=== Modeling Uncertainty in the Earth Sciences ===
 300px | right
By: Jef Caers, 2011" 
John Wiley & Sons Ltd
ISBN 978-119-99262-2
get this book at Wiley
This textbook is an accessible introduction of modeling uncertainty for senior undergraduates and professionals working in the Earth Sciences, Environmental Sciences and Energy Resources and Mining. The book promotes conceptual thinking about uncertainty in a 3 dimensional geological world with sparse datasets. Advanced modelers may not find detailed descriptions of the latest algorithms, but instead will be pushed to rethink underlying principles and main questions geoscientists ask about their models. 
The book sets out with a relevant problem on modeling of an oil spill scenario which sets the scene for thinking about uncertainty in earth science modeling and decision making. A basic review of statistics and and data analysis is provided early on in the book, and is followed by a discussion of concepts and definitions in modeling uncertainty. These sections are written in a practical style, with good explanations of the concepts and clear examples.
Subsequent chapters introduce principles and methods for decision making, modeling of spatial continuity and variograms, object models, how to constrain spatial uncertainty with direct and indirect (geophysical) measurements, modeling structural uncertainty and model sensitivity analysis. All chapters discuss the methodology and have specific examples and good visualizations of the problems and results. Case studies draw from groundwater flow and pollution, from predicting the occurrence of diamonds, from tornado charts, from fragmented and faulted reservoirs and from fluvial sedimentology and many others
The author, Jeff Caers, is a Professor of Geological Sciences at Stanford University, California, USA. Prof. Caers’ is a world expert in geostatistics, spatial modeling and modeling uncertainty applied to subsurface characterization for hydrocarbon reservoirs as well as ground water systems. He is intimately familiar with real-world problems and directs the Stanford Center for Reservoir Forecasting, a research program in reservoir modeling and geostatistics with ~20 partners from the Energy Industry. His experience with teaching in an academic setting, and working with professionals shines throughout the book and its case studies. It is particularly evident in the chapters on decision making in face of uncertainty. 
I am particularly pleased to see that teaching material associated with the textbook is available for any reader or teacher on GitHub: https://github.com/SCRFpublic/Modeling-uncertainty-in-the-Earth-Sciences 
Five labs are precisely documented and give hands-on practice with decision making in view of uncertainty, variograms and sensitivity analysis.
Modeling course questionnaire

== Modeling course survey ==
The CSDMS Integration Facility is interested in making our products and tools accessible to the college classroom. To help us understand the needs of both instructors and students in undergraduate and graduate courses, we are gathering information about how surface process modeling is currently being taught. We have already reviewed the course catalogs of 36 universities in the U.S. and identified CSDMS-relevant courses in a range of departments ().
We would appreciate direct feedback from instructors to supplement and verify these results as we continue to expand our educational and modeling tools. Ultimately, one of our goals is to provide user-friendly, hands-on modeling exercises using the CSDMS Modeling Tool and the CSDMS High Performance Computing Cluster. Course instructors can then easily adopt these exercises for their own earth surface processes courses.
If you currently teach or have recently taught a course that incorporates some quantitative study of earth surface processes, please take the time to complete our brief survey. Even if those processes are not currently addressed in the CSDMS model, data, or educational repositories, we are still interested in learning about your course. The survey should take about ~20 minutes for EACH course you choose to share information about. The results will be most useful if you can complete as many questions as possible. 
After completing the survey, please contact Maureen Berlin maureen.berlin@colorado.edu or Irina Overeem irina.overeem@colorado.edu if you have questions or would like direct feedback once we compile the survey results.
Start the survey
Module:Chart/Default colors

return {'red','red',
'blue','blue',
'green','green',
'yellow','yellow',
'fuchsia','fuchsia',
'aqua','aqua',
'brown','brown',
'orange','orange',
'purple','purple',
'sienna','sienna',
'amethyst','#F0A3FF',
'ebony','#191919',
'forest','#005C31',
'honeydew','#FFCC99',
'iron','#808080',
'khaki','#8F7C00',
'lime','#9DCC00',
'navy','#003380',
'pink','#FFA8BB',
'quagmire','#426600',
'sky','#5EF1F2',
'turquoise','#00998F',
'uranium','#E0FF66',
'violet','#740AFF',
'xanthin','#FFFF80',
'zinnia','#FF5005'}
Morphodynamics of Rivers

==Modeling Lectures==
===Morphodynamics of Rivers===
contributed by G. Parker These modules are developed as an online resource on river morphodynamics intended for graduate level courses. 
# 1D aggradation and Degradation of Rivers; Normal Flow Assumption PPT + exercises ZIP
# 1D model with Bank Erosion and Floodplain Deposition PPT 
# Morphodynamics of Bedrock-Alluvial Transitions PPT + exercises ZIP
# Aggradation and Degradation in Rivers transporting Gravel Mixtures PPT + exercises ZIP
# Mobile and Static Armor in Gravel-bed Streams PPT + exercises ZIP
# Effect of Hydrograph on Morphology of Gravel-bed Streams PPT + exercises ZIP
# Aggradation and Degradation of Rivers: Backwater formulation PPT + exercises ZIP
# Response of a Sand-bed river to a Dredge Slot PPT+ exercises ZIP
# Morphodynamics of Recirculating and Sediment_Feed Flumes PPT+ exercises ZIP
# Transportational Cyclic Steps PPT
# Approximate Formulation for Slope and Bankfull Geometry of Rivers PPT
# Long Profiles of Rivers, with Base level Rise PPT+ exercises ZIP
# Rivers Flowing into Subsiding Basins; Upward Concavity and Downstream Fining PPT+ exercises ZIP
# Morphodynamics of Gravel-Sand Transitions PPT+ exercises ZIP
# Tracer stones Moving as Bedload in Gravel-bed Streams PPT
Movies portal

Do you want to upload your own movie? Please fill out this form and it will appear below automatically.
Movies 	Movies
1) Animations () 	1) Animations ()
 	Environmental animations ()
Animations of environmental conditions are represented here like: ice sheet retreat, wave height of the world, global atmospheric circulation, monthly global temperature change, reservoir emplacement over time, etc.
 	Terrestrial animations ()
This gallery contains animations of terrestrial processes like: river channel sinuosity dynamics, floodplain evolution, landscape evolution, river confluence dynamics, etc.
x150px|link=Coastal_animations 	Coastal animations ()
Coastal animations are provided like: barrier island dynamics, spit evolution, delta evolution, tidal network evolution, shelf incision, etc.
x150px|213px|link=Marine_animations|alt=Coastal animations	Marine animations ()
This gallery contains animations of marine dynamics.
2) Laboratory movies () 	2) Laboratory movies ()
 	Laboratory movies ()
Movies in this gallery show laboratory experiments that should challenge modelers in trying to capture these landscape dynamics into certain models. The Gallery contains: bedload transport, debris flows, sand ripples, braided streams, shoreline transgression, etc.
3) Real event movies () 	3) Real event movies ()
213px|link=Real_event_movies |alt=Real event movies 	Real event movies ()
This gallery contains some spectacular real event movies that should challenge modelers in trying to capture these landscape dynamics into certain models. The Gallery contains: landslides, arctic coastal erosion, thaw lake erosion, flash floods, tidal bores, debris flows, dust storms, calving of tidewater glaciers, etc.
4) All movies () 	4) All movies ()
213px|link=All movies |alt=All movies 	All movies ()
This gallery contains all the movies mentioned above.
We provide information pages with the movies, but the information is only to the best of our understanding. Please feel free to contribute to the information page of each movie if you have expert knowledge on the subject. 
Please acknowledge the original contributors when you are using this material in your presentations or classes. It is intended for educational use! 
A number of the movies here have been posted by CSDMS staff. We have tried to be careful to ask permission for educational use of this material. In some case the original source has not been identified, or we were unsuccessful contacting the authors. If there are any copyright issues, please let us know and we will respond as soon as possible.
Mpiper images

==Image Gallery==
File:WMT-sign-in-screen.png|WMT sign-in screen
File:WMT-3-views.png|WMT three views
File:WMT-panels.png|WMT panels
File:WMT-Model-panel.png|WMT Model panel
File:WMT-open-button.png|WMT open button
File:WMT-save-button.png|WMT save button
File:WMT-run-button.png|WMT run button
File:WMT-more-button.png|WMT more button
File:WMT-driver-showing-components.png|WMT driver showing components
File:WMT-CEM-driver.png|WMT with CEM as driver
File:WMT-CEM-action-menu.png|WMT action menu
File:WMT-Parameters-panel.png|WMT Parameters panel
File:WMT-reset-button.png|WMT reset button
File:WMT-reset-button.png|WMT view files button
File:WMT-info-button.png|WMT info button
File:WMT-open-model-labels.png|WMT open model labels
File:WMT-save-model-labels.png|WMT save model labels
NewWikiMenu

* Community
** Join_CSDMS | Join 
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** ESPIn | ESPIn
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OfficeHours

Are you troubled by questions like:
* How can I change the boundary conditions on a Landlab grid?
* Can I convert an equation from a paper into a Python function?
* What is the best way to organize code and data in a GitHub repository?
If so, CSDMS Office Hours can help!
In Office Hours,
CSDMS Research Software Engineers (RSEs)
are available for a live Zoom meeting.
Bring your questions!
We'll do the best we can to answer them.
To participate:
# Check the schedule
# Review the Code of Conduct
# Click the signup link
Note that you must be a CSDMS member to participate.
If you're not a member, please join CSDMS.
For help, or for more information on Office Hours,
please contact us through the CSDMS Help Desk.
== Schedule ==
Office Hours are open every Wednesday from 9-10 AM US Mountain Time (Denver).
== Code of Conduct ==
Participants and CSDMS staff must read and abide by the CSDMS Code of Conduct.
== Signup link ==
To join an Office Hours session,
please fill in this Google Form.
Once complete,
you'll receive an email with a Zoom link for the session.
Office Hours are first come, first served, so sign up soon!
== Other options for help ==
If you'd like:
* help with a CSDMS product or service without going through a Zoom call, try the CSDMS Help Desk
* to ask a question or discuss an issue with the wider CSDMS community, try the CSDMS Forum
* a CSDMS RSE to visit your department to talk about geoscientific software development, check out the CSDMS Roadshow
OpenEarthscape

'''
FAIR. Efficient. Science-driven. User-engaged.'''
Understanding the past, present, and future of Earth’s surface requires open science and open software. To meet that need, in October 2021 the Community Surface Dynamics Modeling System (CSDMS) launched a voyage to enhance and expand the flagship CSDMS Workbench: a powerful set of software tools and protocols for analyzing and modeling the Earth’s changing surface.
The NSF-supported OpenEarthscape project will raise the proportion and quality of community-built software that adheres to the FAIR principles (Findable, Accessible, Interoperable, Reusable). OpenEarthscape will include:
* EarthscapeHub: a community JupyterHub server that provides easy access to CSDMS tools and libraries
* New capacity for creating and sharing reproducible model-data analysis packages
* Major enhancements to the Landlab and PyMT libraries for model construction and coupling
* An extended version of the Basic Model Interface standard to address parallel architecture and coupling
* Improved library capabilities for data I/O and visualization
Stay tuned to the CSDMS web portal for the latest developments in OpenEarthscape!