nyuuzyou/wikis huggingface dataset:
Past Meetings

=Past meetings=
 
To search for specific presentations:	
The list below will guide you to web pages which display presentations or other materials that have been presented to a scientific community during CSDMS and related meetings. Posting the presentations will allow our entire community to keep up with the latest developments in our science. The presentations are a resource for you to use for your own research, talks and classes. 
Please acknowledge the respective presenter(s) if referencing or making use of their materials and/or data.
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Information on this website is provided as a public service and is intended for educational and research purposes. Materials developed by CSDMS, its members, participants and partners, are the intellectual property of those respective individuals, who reserve all applicable rights to their respective intellectual property.
As an organization devoted to the creation, discovery, dissemination and sharing of knowledge and research, CSDMS holds a strong commitment to comply with all applicable laws regarding intellectual property.
Please note: It is not the intent of CSDMS to violate or infringe upon any copyrights. Our use is presumed to be appropriate and in accordance with "Fair Use" provisions. If any copyrighted material has been inappropriately included on these pages, please inform us. Immediate action will be taken to rectify the situation, either by removing the materials or obtaining appropriate permission.
The University of Colorado at Boulder encourages the fair use of copyrighted materials in support of its academic and research mission, and strives to provide clear guidance to faculty, students, and staff who wish to use any materials that may be copyrighted in their teaching and research.
At the same time, the university is legally required to establish policy stating that faculty, staff, students, and community members must obey all state and federal laws respecting the copyrights and trademarks of others. Learn more at https://www.colorado.edu/libraries/copyright-information.
Plug and Play lectures

===CSDMS and Plug and Play Component Modeling ===
contributed by CSDMS IF staff
This lecture talks about the advantages of using earth surface process models as components, and the ability to plug them into each other and play with new combinations. 
Plug and Play Technology PPT
A overview paper, published in the SEPM Sedimentary record of March 2011 on CSDMS and the vision of plug and play technology is posted here : 
More recently developed concepts on coupling models, the basic modeling interface, and the CSDMS framework were published in 2014:
PyMT

325 px | right 
pymt is an Open Source Python package that provides the tools needed to run and couple models that expose the Basic Model Interface (BMI).
pymt contains:
* Tools necessary for coupling models of disparate time and space scales (including grid mappers)
* Time-steppers that coordinate the sequencing of coupled models
* Exchange of data between BMI-enabled models
* Wrappers that automatically load BMI-enabled models into the PyMT framework
* Utilities that support open-source interfaces (UGRID, SGRID, CSDMS Standard Names, etc.)
* A collection of community-submitted models, written in a variety of programming languages, from a variety of process domains -- but all usable from within the Python programming language
* A plug-in framework for adding additional BMI-enabled models to the framework
pymt is an element of the CSDMS Workbench, an integrated system of software tools, technologies, and standards for building and coupling models.
==Available models and tools in pymt==
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== Resources ==
* Documentation, both for users and developers, can be found at https://pymt.readthedocs.io
* The pymt source code is on GitHub: https://github.com/csdms/pymt. Go there to contribute to pymt, ask a pymt-related question, or submit an issue.
* Examples of using pymt (Jupyter Notebooks)
Quantitative Modeling of Earth Surface Processes

=== Quantitative Modeling of Earth Surface Processes ===
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By: Pelletier, Jon D.
Quantitative Modeling of Earth Surface Processes, by Jon D. Pelletier. Cambridge: Cambridge University Press, 2008. ISBN: 9780521855976 (Cambridge University Press)
Appendix 1: Codes for solving the diffusion equation
* FTCS2D: Forward Time Centered Space (FTCS) method for 2D diffusion equation (Source, Metadata)
** FTCS2D-TerraceDiffusion: Forward Time Centered Space (FTCS) method for 2D Terrace diffusion (Source, Metadata)
* FTCS1D-NonLinear: Forward Time Centered Space (FTCS) method for 1D non-linear diffusion equation (Source, Metadata)
* ADI-2D: Advection diffusion implicit (ADI) method for solving 2D diffusion equation (Source, Metadata)
* Fourier-Bessel Integration: Numerical Integration of Fourier-Bessel terms (Source, Metadata)
Appendix 2: Codes for flow routing
* FillinPitsFlatsDEM: Filling in pits and flats in a DEM (Source, Metadata)
* MFDrouting: MFD flow routing method (Source], Metadata)
* MFDrouting-Successive: Successive flow routing with MFD method (Source, Metadata)
Appendix 3: Codes for solving the advection equation
* Coupled1D: Coupled 1D bedrock-alluvial channel evolution (Source, Metadata)
* StreamPower: Modeling the development of topographic steady state in the stream-power model (Source, Metadata)
* Bedrock Erosion Model: Knickpoint propagation in the 2D sediment-flux-driven bedrock erosion model (Source, Metadata)
Appendix 4: Codes for solving the flexure equation
* Flex1D: Fourier filtering in 1D (Source, Metadata)
* Flex2D: Fourier filtering in 2D (Source, Metadata)
* Flex2D-ADI: ADI technique applied to glacial isostatic response modeling (Source, Metadata)
Appendix 5: Codes for modeling non-Newtonian flows
* LavaFlow2D: 2D radially symmetric lava flow simulation (Source, Metadata)
* Ice-sheet / Glacier reconstruction: Sandpile method for ice-sheet and glacier reconstruction (Source, Metadata)
Appendix 6: Codes for modeling instabilities
* Eolian Dune Model: Werner's eolian dune model (Source, Metadata)
* Channel-Oscillation: Oscillations in arid alluvial channels (Source, Metadata)
* Spirals1D: 1D model of spiral troughs on Mars (Source, Metadata)
Appendix 7: Codes for modeling stochastic processes
* Fractional-noise generation with Fourier-filtering method
** FractionalNoises1D: 1D fractional-noise generation with Fourier-filtering method (Source, Metadata)
** FractionalNoises2D: 2D Gaussian fractional-noise generation with Fourier-filtering method (Source, Metadata)
* Iceages: Stochastic model of Pleistocene ice ages (Source, Metadata)
RCEM 2009

===RCEM 2009 River Coastal and Estuarine Morphodynamics, September 21 - 25, 2009===
Date: September 21 to 25, 2009 	
Location: Santa Fe City, Argentina	
Host:	Universidad Nacional del Litoral (UNL)	
 	
 	
 	
 	
 	
Organizers:
* Ana Bacolla
* Aylen Carrasco
* Carlos M Garcia, UNC (*)
* Daniel Farías (LAD - IAHR)
* Manuel Gallego
* Stefanía Monella
* Emiliano López
* Carina Palumbo
* Hugo Prendes
* Marta Pujol
* Carlos Ramonell
* Marcela Reynares
* Mario Schreider (FICH's Head)
* Ricardo Szupiany
Website:
http://info.rcem.serfe.com/
Sponsors:
 CENEHACIEGRiCSDMSIAHRNCEDRIO
Overview
The International Association on Hydraulic Engineering and Research (IARH) and its Latin American Division (LAD), in association with the Water Science and Engineering Faculty of the Universidad Nacional del Litoral (UNL), are proud to announce the 6th Symposium on River, Coastal and Estuarine Morhodynamics, RCEM 2009.
This highly successful series of conferences has played a key role in promoting an interdisciplinary approach to river and coastal problems. The conference is unique in this emphasis on the intersection between basic research and engineering applications, blending aspects from fundamentals in fluid mechanics to laboratory experiments and field studies in river and coastal morphodynamics.
The conference provides a stimulating forum for communication among applied mathematicians, engineers, geologists, ecologists, geomorphologists, biologists, computer scientists and water managers involved in the study of Earth surface processes.
The meeting will take place in the backyard of the Paraná River, one of the largest rivers in the world, providing a unique opportunity for observation of flow, sedimentation, ecology, biology and morphology in a "natural laboratory".
ROMS-clinic

== ROMS Clinic ==
This is a ROMS tutorial prepared by Chris Sherwood for presentation at the 2011 CSDMS Annual Meeting.
If you stumble across this before the 29-Oct meeting, be warned that it is a work in progress.
Here is an out-of-date tutorial from a ROMS for my own reference: https://www.myroms.org/wiki/index.php/CSTMS_UNSW2008
=== Background ===
* What is ROMS
* Who uses ROMS
* Pros and Cons
=== Flavors of ROMS ===
* Rutgers ROMS
* UCLA
* AGRIF
* John Warner's ROMS
* CSTMS
=== ROMS for Oceanographers ===
=== ROMS for Geologists ===
=== Getting ROMS Source Code ===
=== Standard Test Cases ===
=== Building a Delta ===
RSE

Do you need help
* writing a Basic Model Interface (BMI) for a model,
* developing a Landlab component, or 
* integrating a model with the Python Modeing Toolkit (PyMT)?
Or perhaps you need something more low-level, like
* configuring a build system with CMake,
* updating Fortran 77 code to object-oriented Fortran 2003+,
* speeding up underperforming Python code with Cython, or
* setting up a model to run on the CSDMS HPC?
Or are you more looking for training?
CSDMS research software engineers (RSEs), with backgrounds in quantitative earth sciences and expertise in scientific software development, can help.
=Research Software Engineering as a Service=
CSDMS bridges the gap between science and software,
empowering earth scientists to create sustainable code that is well tested, maintainable, modular, and robust,
by providing the community with one-on-one consulting with a CSDMS research software engineer.
We call this consulting service Research Software Engineering as a Service (RSEaaS).
On an ongoing basis, CSDMS will review requests for RSEaaS support,
and allocate resources based on need and impact.
To be eligible, projects must be open source and must address broader CSDMS goals.
RSEaaS is an efficient, cost-effective way to jump-start a project.
For more information, consulting rates,
or to submit a request for RSEaaS support,
please contact us at csdms@colorado.edu.
= Proposal Collaboration=
Scientists planning to develop code to answer outstanding research questions are invited to collaborate with CSDMS.
Creating a new model or analysis tool typically demands a significant investment of time.
An experienced CSDMS research software engineer can reduce this time investment,
saving you money,
plus the resulting code will be flexible, interoperable, robust, and reusable.
Depending on the needs of your project,
we invite you to discuss options for including work with a CSDMS research software engineer,
either through a collaborative proposal or a subaward.
= Training=
We teach a variety of programming and modeling skills workshops, ranging from one- or two-day
Software Carpentry workshops
to short courses on earth surface process modeling with Landlab and the Python Modeling Toolkit (pymt).
Lessons are derived from the CSDMS Ivy course material
and presented on the OpenEarthscape JupyterHub,
a scalable hosting platform with simple access control for instructors and students.
The CSDMS research software engineers (RSEs) have research backgrounds in quantitative earth sciences
and expertise in scientific software development,
so the courses and workshops we teach can be tailored for a technical focus;
for example, we can teach programming best practices, model development, and model coupling with the CSDMS Workbench.
Further, we have experience teaching introduction to modeling with hands-on clinics for advanced undergraduates and beginning graduate students.
For more information, as well as examples of previous successful collaborations, please contact us at csdms@colorado.edu.
Reproducibility

==You can now use Whole Tale for reproducible research==
In the realm of science, the anticipation is that research should be reproducible. This necessitates comprehensive record-keeping encompassing inputs, their acquisition methods, data processing, employed numerical models, as well as ensuring both the complete dataset and numerical model are conveniently obtainable. Rather than starting from scratch, a solution now exists in the form of a portal: Whole Tale.
The Whole Tale platform fosters computational reproducibility by empowering researchers to create and publish transparent and reproducible artifacts of computational research. A "Tale" is characterized as an executable self-contained research entity that incorporates data (references), code (computational methods), computational environment, and a narrative (traditional scientific storytelling). Through the Whole Tale platform, users can actively produce and modify Tales, as well as rerun them to duplicate and validate outcomes just as the original Tale creator achieved. Furthermore, a Tale can be submitted (e.g., published) to an external research repository and be assigned a persistent identifier by said repository.
You can find a brief introduction guide that serves as a resource for the geoscience community at WholeTale-Intro. This guide assists in utilizing the Whole Tale platform for the purpose of sharing and publishing computational models, thereby facilitating the pursuit of reproducible research efforts.
And when you have a few more minutes, please watch the webinar on Whole Tale provided by Craig Willis Publishing Transparent and Reproducible Computational Research with Whole Tale. Craig will give an intro on how to use the Whole Tale platform, and how you can start using it. Spoiler alert, you can use if for free!
Roadshow01

The first CSDMS Roadshow will be held 2023 March 7-9
at Montclair State University in Montclair, NJ,
hosted by Prof. Jorge Lorenzo Trueba in the Department of Earth and Environmental Studies.
Our agenda is listed in the Table below.
 Table 1. Agenda for Roadshow #1 at Montclair State University.
Tue Mar 7 	Wed Mar 8	Thu Mar 9
CSDMS Overview	Git II 	BMI
Shell I 	Conda 	pymt
Python I 	Python II	Landlab II
Git I 	Landlab I	Best Practices
We'll meet in CELS 225 starting at 9 am on Tuesday, March 7.
See you there & then!
Roadshow02

The second CSDMS Roadshow is scheduled for 2023 August 16-18
at the University of Minnesota in Minneapolis, MN,
hosted by Prof. Andrew Wickert in the Department of Earth and Environmental Sciences.
The agenda is listed in the Table below.
 Table 1. Agenda for Roadshow #2 at the University of Minnesota.
Wed Aug 16 	Thu Aug 17	Fri Aug 18
CSDMS Overview	Git II 	Team SoftwareDevelopment
Shell 	Python II 	Team SoftwareDevelopment
Python I 	Landlab 	Team SoftwareDevelopment
Git I 	Landlab 	Team SoftwareDevelopment
We'll meet in 185 Tate Hall.
Class will run from 9:00a - 4:30p each day, with morning and afternoon breaks plus an hour and a half for lunch.
Roadshow03

The third CSDMS Roadshow was held 2024 January 24-25
at North Carolina State University in Raleigh, NC,
hosted by Prof. Helena Mitasova in the Department of Marine, Earth and Atmospheric Sciences
and the Center for Geospatial Analytics.
The agenda is listed in the Table below.
 Table 1. Agenda for Roadshow #3 at North Carolina State University.
Wed Jan 24 	Thu Jan 25
CSDMS Overview 	Collaboration discussions
Version Control with Git and GitHub	Landlab
Python for Modeling 	Best Practices in Scientific Software Development
We assume basic knowledge of Python and shell commands.
We'll meet in 5119 Jordan Hall.
Class will run from 9:00a - 4:30p each day, with morning and afternoon breaks plus an hour and a half for lunch.
Roadshow04

The fourth CSDMS Roadshow was held 2025 January 8-9
at Texas State University in San Marcos, TX,
hosted by Prof. Todd Swannack (Department of Biology;
also U.S. Army Corps of Engineers Integrated Ecological Modeling team).
In this Roadshow,
we used best practices in geoscientific software development to write a model, using the contents of the csdms/roadshow-diffusion repository as a guide.
Roadshows

Would you like to learn more about
* making a model in Landlab
* best practices in writing code for your research
* using GitHub to store and safeguard your work
but you don't have the time or money to visit CSDMS in Boulder
for the Annual Meeting, ESPIn, or training?
Then let CSDMS come to you with the CSDMS Roadshow!
== The idea ==
In a Roadshow,
CSDMS research software engineers (RSEs) visit your group, lab, or department
and present one to three days of interactive instruction.
Lessons are drawn from the CSDMS Ivy course material,
which includes information on shell, Python, git, conda, Landlab, BMI, pymt, and best practices in scientific software development.
The Roadshow also includes a brief overview of CSDMS,
focusing on the resources we provide for students and early-career researchers.
Our goal is to reach people with the CSDMS message of open source software development
in support of research in earth and planetary surface processes.
== The plan ==
The only equipment needed for a CSDMS Roadshow:
* a classroom or conference room,
* a projector, and
* an internet connection.
Participants should bring a laptop with a web browser and an internet connection to work on the interactive Jupyter Notebook lessons.
All course material is run on EarthscapeHub.
A sample agenda for one to three days of instruction is given in Table 1 below.
 Table 1. Sample topics for a CSDMS Roadshow.
Day 1 	Day 2 	Day 3
CSDMS Overview	Git II 	BMI
Shell I 	Conda 	pymt
Python I 	Python II	Landlab II
Git I 	Landlab I	Best Practices
The topics and content of a CSDMS Roadshow can be customized.
== Interested? Contact us! ==
If you're interested in hosting a CSDMS Roadshow, please contact us at csdms@colorado.edu.
If you're a CSDMS member and you'd like to join a nearby Roadshow,
see the list of upcoming Roadshows below.
== Roadshows, near and far ==
* Roadshow #1 (Montclair State University, Montclair, NJ)
* Roadshow #2 (University of Minnesota, Minneapolis, MN)
* Roadshow #3 (North Carolina State University, Raleigh, NC)
* Roadshow #4 (Texas State University, San Marcos, TX)
* Roadshow #5 (TBD. It could be at your institution--let us know!)
== Other options for help ==
If you'd like:
* live help (through Zoom) from a CSDMS research software engineer (RSE), see CSDMS Office Hours
* help with a CSDMS product or service without going through a Zoom call, try the CSDMS Help Desk
* to ask a question or discuss an issue with the wider CSDMS community, try the CSDMS Forum
SEDIBUD 2008

===SEDIBUD workshop, September 9 - 13, 2008===
Date: September 9 to 13, 2008 	
Location: Boulder, Colorado, USA	
Host:	INSTAAR, Mountain research station, CO	
 	
 	
 	
 	
 	
Organizers:
Achim A. Beylich 	Achim.Beylich@ngu.no
Scott F. Lamoureux	lamoureu@post.queensu.ca
Armelle Decaulne 	armelle.sedibud@gmail.com
Nel Caine 	Cainen@colorado.edu
Irina Overeem 	Irina.Overeem@colorado.edu
Sponsors:
International Association of Geomorphologists (IAG)Community Surface Dynamics Modeling System (CSDMS) 
Goals:
# Climate change affects all Earth surface systems but with the arguably greatest impact in high-latitude and high-altitude cold environments. In these areas, climate change shapes earth surface processes not just by altering vegetation cover and human activities but also through its impact on frost penetration and duration within the ground surface layers. All of these factors influence patterns of erosion, transport and deposition of sediments and related fluxes (e.g., nutrients, solutes, carbon). It is a challenge to develop a better understanding of how these factors combine to affect sedimentary transfer processes and sediment budgets in cold environments. Our baseline knowledge on the erosion, sedimentary transfer and depositional processes operating within Holocene and present-day climates and as landscape systems evolved and under given vegetation covers, forms our basis for predicting the consequences of predicted future climate change and related vegetation cover changes. However, much of this information is limited in terms of spatial and temporal coverage and needs to be extended and consolidated. Only when we have these reliable models response to landscape and climate change we will have fuller understanding of probable future changes to these regions.
# Central issues will be the further discussion of relevant science questions to be addressed within the SEDIBUD programme, the presentation and further discussion of the SEDIFLUX Manual (Revised Version), the presentation of SEDIBUD key test sites (catchments), the development of the SEDIBUD metadata database, and the development of further ideas to continue and to extend the scientific activities within SEDIBUD.
Program and Abstract Volume:
The final program and abstract volume 
SEDIBUD Newsletter reporting on meeting, 
Talks:
</table>
Science on a Sphere

You can now visit your local Science on a Sphere® and be in awe with the damming of the world’s rivers, or see how waves in the Atlantic Ocean developed during Hurricane Sandy. Over the last couple of months, CSDMS has been developing Science on a Sphere (SOS) datasets. The first datasets with lesson material are posted! 
We show how dams spread worldwide, with peak development in the 1950’s. We highlight dam building over time for two large river basins, the Mississippi River basin in the USA, and the Yangtze River basin in China. 
Another set of animations was developed from the WaveWatch III® data to show wave power and wave height in the global oceans for the year 2012. Two detailed animations highlight waves during hurricane Katrina and Sandy, so high they even wiped out a buoy in the Gulf of Mexico.
Find out whether there is a museum near you that has one of these giant animated globes http://sos.noaa.gov/What_is_SOS/sites.php here.
Even when you find out there is no globe anywhere near, you can go to the Science on a Sphere website and instead just view and download the animations for use in the classroom. 
We have a number of additional datasets to work on, and will work with the CSDMS community to contribute a range of movies to the Science on a Sphere repository. It is worth your time to make these, 33 million people see Science On a Sphere® every year! Feel free to contact CSDMS EKT: irina.overeem@colorado.edu
==CSDMS developed the following SOS datasets==
 A Closer Look at El Nino & La Nina
 Rivers: Daily Discharge - 2010
 Dams and Reservoirs 1800-2010
 Dams and Reservoirs of the Mississippi 1800-2010
 Dams and Reservoirs of the Yangtze River 1800-2010
 Wave Power over 2012
 Wave heights during Hurricane Sandy 2012
 Wave heights during Hurricane Katrina
 Significant wave height over 2012
Search username

Search the CSDMS website
width=50
type=fulltext
break=no
default=Last name
searchbuttonlabel=Search
namespaces=User
Note: Your username is the name that appears after the prefix "User:"
:: E.g. a search on Tucker will give:
::Page title matches
::::User:Gtucker
::::(section Greg Tucker, website username login: Gtucker)
::::1 KB (58 words) - 14:04, 10 July 2018
Shorter Miniconda install instructions

<noinclude>
==Brief Miniconda install instructions==
Install a Python distribution to be used locally by WMT.
We like to use Miniconda.
 cd $install_dir
 curl https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -o miniconda.sh
 bash ./miniconda.sh -f -b -p $(pwd)/conda
 export PATH=$(pwd)/conda/bin:$PATH
If working with an existing Miniconda install, be sure to update everything before continuing:
 conda update conda
 conda update --all