The ReBoot Multiuniverse

The ReBoot Multiuniverse was something only TheIkranRider concocted, a fanfic series which branched from the CGI, Rainmaker classic. Ever since she crossed over with Pokémon in 1999, she soon decided to expand it even more to Super Metroid later that year, and then Super Smash Bros Melee in 2002! The Guardian's Code was obviously omitted, and it concluded with a plot synopsis centering around the web comic, Paradigms Lost, with Pokémon Gens 1-6.
It mostly revolves around Ikran's Pokémon Trainer OC, Akari and all her misadventures in Mainframe and soon other Systems. Although, originally it would've been all 32+ entries as chapters combined into 1 book, but due to franchise fatigue and loss of inspiration due to mundanity, Ikran's entries are limited much like the little Pokémon novella series. Here's a list of these fanfics, as well as the Pokémon and other characters involved:
== List of entries ==
* Prologue (based on The Tearing) - Chansey, Kangaskhan, Mr. Mime (cameos by Doduo and Mew duo)
* Encased (based on Medusa Bug) - Metapod, Butterfree (evolution)
* Attack on the Energy Sea (based on The Crimson Binome) - 2 Meowths, Persian, Eevee, Ditto (cameo of Tyranitar, Blastoise, Mewtwo, Gyarados, and Samus)
* Psyduck's Night (based on Talent Night) - Psyduck, Golduck (evolution; cameos by Mr. Mime and Magnemite)
* The Game Sprite (based on AndrAIa) - 2 Golducks, Gyarados, Squirtle, Blastoise, Tentacruel, Staryu, Starmie, Vaporeon, Mantine, Octillery, Seaking, Kingdra (cameo by Akari)
* The Great Web War (based on Web World Wars) - Mewtwo (multiple cameos, Samus)
* Guardian 2 the Graves (based on To Mend and Defend) - Nidorino, Nidoqueen, Crobat, Cubone, Marowak (evolution), Murkrow, Gastly
* Ready, Aim, Firewall! (Based on Firewall) - Moltres, Charmander, Typhlosion, Dewgong, Articuno, Magcargo, Flareon, Magmar, Ninetales, Vulpix (cameos by Mewtwo, Rapidash, Arcanine, and Houndoom)
* A Lost Cause (based on Game Over) - Mewtwo (cameos by multiple Fire-Types)
* I Am Number One (based on Number 7) - Abra, Alakazam (evolution)
* The Guardian's Secret (based on The Episode with No Name) - Marill, Totodile
* Interface's Odyssey (based on events from Web Riders on the Storm) - Mewtwo, Samus
* Rat-tat-tatting on Mainframe's Door (based on Mousetrap) - Raticate (cameos by Samus and Charmander)
* Mainframe Strikes Back! (Based on Showdown) - Bulbasaur, Ivysaur, Venusaur, Chikorita, Bayleaf, and Meganium (cameos by Aerodactly and multiple Pokémon)
* System Shock! (Based on System Crash) - Raichu and Pikachu (cameos by Aerodactyl, Mewtwo and Nidorino)
* The Last Hurrah (based on End Prog) - Mew, Mewtwo, Meganium (cameos by multiple Pokémon and Samus)
* Daemon Rising with a...SMASH! (Based on Daemon Rising, Cross Nodes, What's Love Got to Do with it? and Sacrifice) - Mewtwo (cameos by multiple Pokémon)
* Conclusion of the ReBoot/Pokémon crossover (plot synopsis; multiple Pokémon from Gens 1-6)
== List of Pokémon in each entry (even unavailable ones) ==
* Chansey, Kangaskhan and Mr. Mime (The Tearing)
* Ponyta and Rapidash (Racing the Clock)
* Doduo, Dodrio, Slowbro and Slowking (The Quick and the Fed)
* Metapod, Butterfree (evolution) (Medusa Bug)
* Snubbull, Granbull, Wigglytuff (The Tiff)
* Houndour and Growlithe (In the Belly of the Beast)
* 2 Meowths, Persian, Eevee, Ditto (The Crimson Binome)
* Poliwhirl, Politoed (evolution) (Enzo the Smart)
* Onix, Steelix (evolution), Geodude, Golem (Warriors, Wizards, and a Word from our Sponsors)
* Golbat, Crobat (evolution) (The Great Brain Robbery)
* Psyduck, Golduck (evolution) (Talent Night)
* Spearow, Fearow (evolution), Farfetch'd, Pidgeotto, Pidgeot (Identity Crisis, Part 1)
* Fearow, Farfetch'd, Pidgeotto, Pidgeot (Identity Crisis, Part 2)
* Magnemite, Magneton and Magnezone (evolution) (Infected)
* All Hitmon fighters, Machop, and Mankey (High Code)
* Ampharos, Zapdos, Magnezone, Electrode, Elekid, Jolteon (Bad Bob)
* Dratini, Dragonair, Dragonite and Charizard (When Games Collide)
* Koffing, Weezing and Lickitung (Painted Windows)
* Staryu, Starmie, Squirtle, Blastoise, Mantine, Gyarados, Vaporeon, Seaking, Kingdra, Octillery, Tentacruel, 2 Golducks (AndrAIa)
* Ekans, Arbok (Nullzilla)
* Sunflora, Bellossom, Vileplume (Gigabyte)
* Umbreon, Arcanine, Houndoom (Trust No One)
* Mewtwo (Web World Wars)
* Gastly, Nidorino, Nidoqueen, Crobat, Cubone, Murkrow (To Mend and Defend)
* Furret, Dugtrio, Steelix, Sandslash, Rhyhorn, Larvitar (Between a Raccoon and a Hard Place)
* Charmander, Typhlosion, Magmar, Moltres, Vulpix, Ninetales, Magcargo, Dewgong, Articuno, Flareon (Firewall)
* Mewtwo (Game Over)
* Butterfree, Scyther, Scizor (evolution), Parasect, Ariados, Spinarak, Yanma, Venemoth, Pinsir, Heracross, Shuckle (Icons)
* Girafarig, Xatu (Where No Sprite Has Gone Before)
* Abra, Alakazam (evolution) (Number 7)
* Totodile, Marill (The Episode with No Name)
* Togetic, Noctowl (The Return of the Crimson Binome)
* Kingler, Scizor, Skarmory, Sneasel, Politoed, Espeon (The Edge of Beyond)
* Gastly, Haunter, Gengar, and Misdreavus (Web Riders on the Storm)
* Rattata, Raticate (Mousetrap)
* Kabutops, Aerodactyl (Megaframe)
* Bulbasaur, Ivysaur, Venusaur, Chikorita, Bayleef, Meganium (Showdown)
* Pikachu, Raichu (System Crash)
* Mewtwo, Mew, Meganium (End Prog)
* Mewtwo, Mew, Legendary Birds, Bellossom, Charizard, Pikachu, Venusaur, Blastoise, Pichu, Jigglypuff (Daemon Rising saga)
* Multiple Pokémon from Gens 1-6, including Primal Rayquazza (Conclusion)
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