At2g14910.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g14910-1-1b68_A.pir.txt
======================================================
Assigned types to 386 residues in Sequence 2-14910-1, 5 remain unknown
Assigned types to 175 residues in Sequence 1b68_A, 216 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 243 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 244 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 245 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 246 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 247 All residues are positively and negatively charged
Translated sequence file At2g14910-1-1b68_A.pir.txt into sequence alignment.
======================================================
>1B68.pdb Made from 1172 ATOM records in 1B68.pdb
GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK
AYKSELEEQLTAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQA
MLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY
======================================================
Best alignment:
1B68.pdb 18 VQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEE 58
 Q LSE + EE L +V+ E + + +L + K EL+E
2-14910-1 199 TQNLSETIDEEGL-GRVSSEAQEYILRLQSQLSSVKKELQE 238
======================================================
Highlighted IDENTICAL residue GLN 41 index1 19 path 200 %Seq 100.00
Highlighted IDENTICAL residue GLU 45 index1 23 path 204 %Seq 100.00
Highlighted IDENTICAL residue ALA 62 index1 40 path 220 %Seq 100.00
Highlighted IDENTICAL residue THR 67 index1 45 path 225 %Seq 100.00
Highlighted IDENTICAL residue LYS 72 index1 50 path 230 %Seq 100.00
Highlighted IDENTICAL residue LEU 78 index1 56 path 236 %Seq 100.00
Highlighted 6 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g14910-1-1b68_A.pir.txt.1B68.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g14910-1-1b68_A.pir.txt PIR amino_acid 1B68.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@