At2g02970.1/PDB

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Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g02970-1u6zA.pir.txt
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Assigned types to 555 residues in Sequence 2-02970, 8 remain unknown
Assigned types to 313 residues in Sequence 1u6zA, 250 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g02970-1u6zA.pir.txt into sequence alignment.
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>1U6Z.pdb Made from 8205 ATOM records in 1U6Z.pdb
EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEA
MTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPY
PIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL
VESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWN
VAMGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLP
GLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRH
QDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEA
LLRWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRY
HRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLI
TDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEESTPEF
AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMT
RGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPI
EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILVE
SRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVA
MGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGL
SEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQD
VRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALL
RWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHR
KAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITD
DSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEESTPEI
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Best alignment:
1U6Z.pdb 239 LRHRNFASLSL-PGLS 253
 R N+ASL L PGLS
2-02970 116 FRGANYASLKLHPGLS 131
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Highlighted IDENTICAL residue HIS 252 index1 241 path 118 %Seq 100.00
Highlighted IDENTICAL residue LEU 260 index1 249 path 126 %Seq 100.00
Highlighted IDENTICAL residue GLY 262 index1 251 path 129 %Seq 100.00
Highlighted IDENTICAL residue LEU 263 index1 252 path 130 %Seq 100.00
Highlighted 4 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g02970-1u6zA.pir.txt.1U6Z.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g02970-1u6zA.pir.txt PIR amino_acid 1U6Z.pdb A 100.0 BLOSUM62.dat 
completed successfully.
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