At2g03140.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g03140-1a8s_.pir.txt
======================================================
Assigned types to 1805 residues in Sequence 2-03140, 8 remain unknown
Assigned types to 271 residues in Sequence 1a8s_, 1542 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Translated sequence file At2g03140-1a8s_.pir.txt into sequence alignment.
======================================================
>1A8S.pdb Made from 2085 ATOM records in 1A8S.pdb
TTFTTRDGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVI
AHDRRGHGRSSQPWSGNDMDTYADDLAQLIEHLDLRDAVLFGFSTGGGEV
ARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLAD
RSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAF
SETDFTEDLKKIDVPTLVVHGDADQVVPIEASGIASAALVKGSTLKIYSG
APHGLTDTHKDQLNADLLAFIKG
======================================================
Best alignment:
1A8S.pdb 116 GLISAVPPLMLKTEANPGGLPME 138
 GL+S + ++ +PGG+ +E
2-03140 697 GLVSGSDETISGSDNSPGGVELE 719
======================================================
Highlighted IDENTICAL residue GLY 116 index1 116 path 705 %Seq 50.00
Highlighted IDENTICAL residue LEU 117 index1 117 path 706 %Seq 50.00
Highlighted IDENTICAL residue ILE 118 index1 118 path 707 %Seq 50.00
Highlighted IDENTICAL residue SER 119 index1 119 path 708 %Seq 50.00
Highlighted IDENTICAL residue ALA 120 index1 120 path 709 %Seq 50.00
Highlighted IDENTICAL residue VAL 121 index1 121 path 710 %Seq 50.00
Highlighted IDENTICAL residue PRO 122 index1 122 path 711 %Seq 50.00
Highlighted IDENTICAL residue PRO 123 index1 123 path 712 %Seq 50.00
Highlighted IDENTICAL residue LEU 124 index1 124 path 713 %Seq 50.00
Highlighted IDENTICAL residue MET 125 index1 125 path 714 %Seq 50.00
Highlighted IDENTICAL residue LEU 126 index1 126 path 715 %Seq 50.00
Highlighted IDENTICAL residue LYS 127 index1 127 path 716 %Seq 50.00
Highlighted IDENTICAL residue THR 128 index1 128 path 717 %Seq 50.00
Highlighted IDENTICAL residue GLU 129 index1 129 path 718 %Seq 50.00
Highlighted IDENTICAL residue ALA 130 index1 130 path 719 %Seq 50.00
Highlighted IDENTICAL residue ASN 131 index1 131 path 720 %Seq 50.00
Highlighted IDENTICAL residue PRO 132 index1 132 path 721 %Seq 50.00
Highlighted IDENTICAL residue GLY 133 index1 133 path 722 %Seq 50.00
Highlighted IDENTICAL residue GLY 134 index1 134 path 723 %Seq 50.00
Highlighted IDENTICAL residue LEU 135 index1 135 path 724 %Seq 50.00
Highlighted IDENTICAL residue PRO 136 index1 136 path 725 %Seq 50.00
Highlighted IDENTICAL residue MET 137 index1 137 path 726 %Seq 50.00
Highlighted IDENTICAL residue GLU 138 index1 138 path 727 %Seq 50.00
Highlighted 23 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g03140-1a8s_.pir.txt.1A8S.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g03140-1a8s_.pir.txt PIR amino_acid 1A8S.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@