At2g11775.1/PDB

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Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g11775-d1bhta2.pir.txt
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Assigned types to 109 residues in Sequence 2-11775, 9 remain unknown
Assigned types to 84 residues in Sequence d1bhta2, 34 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g11775-d1bhta2.pir.txt into sequence alignment.
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>1BHT.pdb Made from 2822 ATOM records in 1BHT.pdb
RRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTC
KAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGR
SYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEE
GGPWCFTSNPEVRYEVCDIPQCSEVERNTIHEFKKSAKTTLIKIDPALKI
KTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVK
KEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHE
HSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEV
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Best alignment:
1BHT.pdb 58 ARKQCLWFPF 67
 RKQ W PF
2-11775 97 VRKQSPWSPF 106
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Highlighted IDENTICAL residue PHE 99 index1 65 path 113 %Seq 100.00
Highlighted 1 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g11775-d1bhta2.pir.txt.1BHT.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g11775-d1bhta2.pir.txt PIR amino_acid 1BHT.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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