At2g04030.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g04030-1-2cg9A.pir.txt
======================================================
Assigned types to 780 residues in Sequence 2-04030-1, 13 remain unknown
Assigned types to 655 residues in Sequence 2cg9A, 138 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 302 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 303 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 304 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 305 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 306 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 307 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 308 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 309 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 310 All residues are positively and negatively charged
Translated sequence file At2g04030-1-2cg9A.pir.txt into sequence alignment.
======================================================
>2CG9.pdb Made from 11844 ATOM records in 2CG9.pdb
ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLS
DPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT
KAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESN
AGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFV
AYPIQLVVTKEVEKEEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSI
SNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFNNIKLYVRRVFITDEAE
DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFN
EIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELT
SLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPI
DEYAFTQLKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALK
EILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQAKTFEISPK
SPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRI
NRLISLGLNASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDAL
DKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINN
LGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSND
DEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKE
VIKRHSEFVAYPIQLVVTKEVEKEEEVQEIEELNKTKPLWTRNPSDITQE
EYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKK
KNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNK
IMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRA
ALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPF
LDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEK
AEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA
NMERIMKAQAKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETA
LLTSGFSLDEPTSFASRINRLISLGLNWAQRSSTTDPERNYVLITVSIAD
CDAPELTIKPSYIELKAQSKVHHYQLHIDLYKEIIPEKTMHKVANGYFLK
LYKKDLESEYWPRLTKEKVKYPYIKTDFDKWVDADEQDEVEAWAQRSSTT
DPERNYVLITVSIADCDAPELTIKPSYIELKAQSKVHHYQLHIDLYKEII
PEKTMHKVANGYFLKLYKKDLESEYWPRLTKEKVKYPYIKTDFDKWVDAD
EQDEVEA
======================================================
Best alignment:
2CG9.pdb 610 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLS 659
 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLS
2cg9A 1 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLS 50
2CG9.pdb 660 DPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 709
 DPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT
2cg9A 51 DPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 100
2CG9.pdb 710 KAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESN 759
 KAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESN
2cg9A 101 KAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESN 150
2CG9.pdb 760 AGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFV 809
 AGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFV
2cg9A 151 AGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFV 200
2CG9.pdb 810 AYPIQLVVTKEVEK-----EEEVQEIEELNK------------------- 835
 AYPIQLVVTKEVEK EEEVQEIEEL K 
2cg9A 201 AYPIQLVVTKEVEKEVPIPXXXXXXXXXXPKLEEVDEEEEKKPKTKKVKE 250
2CG9.pdb 835 ----------TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVE 875
 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVE
2cg9A 251 EVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVE 300
2CG9.pdb 876 GQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWL 925
 GQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWL
2cg9A 301 GQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWL 350
2CG9.pdb 926 SFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSE 975
 SFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSE
2cg9A 351 SFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSE 400
2CG9.pdb 976 QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVT 1025
 QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVT
2cg9A 401 QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVT 450
2CG9.pdb 1026 RMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 1075
 RMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ
2cg9A 451 RMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 500
2CG9.pdb 1076 LKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQV 1125
 LKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQV
2cg9A 501 LKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQV 550
2CG9.pdb 1126 EKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQA-------------KT 1162
 EKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQA KT
2cg9A 551 EKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKT 600
2CG9.pdb 1163 FEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPT 1212
 FEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPT
2cg9A 601 FEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPT 650
2CG9.pdb 1213 SFASRINRLISLGLN 1227
 SFASRINRLISLGLN
2cg9A 651 SFASRINRLISLGLN 665
======================================================
Highlighted IDENTICAL residue GLU 4 index1 612 path 77 %Seq 100.00
Highlighted IDENTICAL residue PHE 6 index1 614 path 79 %Seq 100.00
Highlighted IDENTICAL residue GLU 7 index1 615 path 80 %Seq 100.00
Highlighted IDENTICAL residue GLN 9 index1 617 path 82 %Seq 100.00
Highlighted IDENTICAL residue ALA 10 index1 618 path 83 %Seq 100.00
Highlighted IDENTICAL residue GLU 11 index1 619 path 84 %Seq 100.00
Highlighted IDENTICAL residue LEU 15 index1 623 path 88 %Seq 100.00
Highlighted IDENTICAL residue LEU 18 index1 626 path 91 %Seq 100.00
Highlighted IDENTICAL residue ILE 19 index1 627 path 92 %Seq 100.00
Highlighted IDENTICAL residue TYR 24 index1 632 path 97 %Seq 100.00
Highlighted IDENTICAL residue SER 25 index1 633 path 98 %Seq 100.00
Highlighted IDENTICAL residue LYS 27 index1 635 path 100 %Seq 100.00
Highlighted IDENTICAL residue GLU 28 index1 636 path 101 %Seq 100.00
Highlighted IDENTICAL residue PHE 30 index1 638 path 103 %Seq 100.00
Highlighted IDENTICAL residue LEU 31 index1 639 path 104 %Seq 100.00
Highlighted IDENTICAL residue ARG 32 index1 640 path 105 %Seq 100.00
Highlighted IDENTICAL residue GLU 33 index1 641 path 106 %Seq 100.00
Highlighted IDENTICAL residue LEU 34 index1 642 path 107 %Seq 100.00
Highlighted IDENTICAL residue SER 36 index1 644 path 109 %Seq 100.00
Highlighted IDENTICAL residue ASN 37 index1 645 path 110 %Seq 100.00
Highlighted IDENTICAL residue ALA 38 index1 646 path 111 %Seq 100.00
Highlighted IDENTICAL residue SER 39 index1 647 path 112 %Seq 100.00
Highlighted IDENTICAL residue ASP 40 index1 648 path 113 %Seq 100.00
Highlighted IDENTICAL residue ALA 41 index1 649 path 114 %Seq 100.00
Highlighted IDENTICAL residue LEU 42 index1 650 path 115 %Seq 100.00
Highlighted IDENTICAL residue ASP 43 index1 651 path 116 %Seq 100.00
Highlighted IDENTICAL residue LYS 44 index1 652 path 117 %Seq 100.00
Highlighted IDENTICAL residue ARG 46 index1 654 path 119 %Seq 100.00
Highlighted IDENTICAL residue SER 49 index1 657 path 122 %Seq 100.00
Highlighted IDENTICAL residue PRO 53 index1 661 path 126 %Seq 100.00
Highlighted IDENTICAL residue LEU 56 index1 664 path 129 %Seq 100.00
Highlighted IDENTICAL residue ASP 61 index1 669 path 134 %Seq 100.00
Highlighted IDENTICAL residue LEU 62 index1 670 path 135 %Seq 100.00
Highlighted IDENTICAL residue ILE 64 index1 672 path 137 %Seq 100.00
Highlighted IDENTICAL residue ARG 65 index1 673 path 138 %Seq 100.00
Highlighted IDENTICAL residue ILE 66 index1 674 path 139 %Seq 100.00
Highlighted IDENTICAL residue PRO 68 index1 676 path 141 %Seq 100.00
Highlighted IDENTICAL residue PRO 70 index1 678 path 143 %Seq 100.00
Highlighted IDENTICAL residue ILE 77 index1 685 path 150 %Seq 100.00
Highlighted IDENTICAL residue ASP 79 index1 687 path 152 %Seq 100.00
Highlighted IDENTICAL residue GLY 81 index1 689 path 154 %Seq 100.00
Highlighted IDENTICAL residue ILE 82 index1 690 path 155 %Seq 100.00
Highlighted IDENTICAL residue GLY 83 index1 691 path 156 %Seq 100.00
Highlighted IDENTICAL residue MET 84 index1 692 path 157 %Seq 100.00
Highlighted IDENTICAL residue THR 85 index1 693 path 158 %Seq 100.00
Highlighted IDENTICAL residue LYS 86 index1 694 path 159 %Seq 100.00
Highlighted IDENTICAL residue GLU 88 index1 696 path 161 %Seq 100.00
Highlighted IDENTICAL residue LEU 89 index1 697 path 162 %Seq 100.00
Highlighted IDENTICAL residue ILE 90 index1 698 path 163 %Seq 100.00
Highlighted IDENTICAL residue LEU 93 index1 701 path 166 %Seq 100.00
Highlighted IDENTICAL residue GLY 94 index1 702 path 167 %Seq 100.00
Highlighted IDENTICAL residue THR 95 index1 703 path 168 %Seq 100.00
Highlighted IDENTICAL residue ILE 96 index1 704 path 169 %Seq 100.00
Highlighted IDENTICAL residue ALA 97 index1 705 path 170 %Seq 100.00
Highlighted IDENTICAL residue SER 99 index1 707 path 172 %Seq 100.00
Highlighted IDENTICAL residue GLY 100 index1 708 path 173 %Seq 100.00
Highlighted IDENTICAL residue THR 101 index1 709 path 174 %Seq 100.00
Highlighted IDENTICAL residue PHE 104 index1 712 path 177 %Seq 100.00
Highlighted IDENTICAL residue ALA 107 index1 715 path 180 %Seq 100.00
Highlighted IDENTICAL residue LEU 108 index1 716 path 181 %Seq 100.00
Highlighted IDENTICAL residue GLY 111 index1 719 path 188 %Seq 100.00
Highlighted IDENTICAL residue ALA 112 index1 720 path 189 %Seq 100.00
Highlighted IDENTICAL residue ASP 113 index1 721 path 190 %Seq 100.00
Highlighted IDENTICAL residue ILE 117 index1 725 path 194 %Seq 100.00
Highlighted IDENTICAL residue GLY 118 index1 726 path 195 %Seq 100.00
Highlighted IDENTICAL residue GLN 119 index1 727 path 196 %Seq 100.00
Highlighted IDENTICAL residue PHE 120 index1 728 path 197 %Seq 100.00
Highlighted IDENTICAL residue GLY 121 index1 729 path 198 %Seq 100.00
Highlighted IDENTICAL residue VAL 122 index1 730 path 199 %Seq 100.00
Highlighted IDENTICAL residue GLY 123 index1 731 path 200 %Seq 100.00
Highlighted IDENTICAL residue PHE 124 index1 732 path 201 %Seq 100.00
Highlighted IDENTICAL residue TYR 125 index1 733 path 202 %Seq 100.00
Highlighted IDENTICAL residue SER 126 index1 734 path 203 %Seq 100.00
Highlighted IDENTICAL residue PHE 128 index1 736 path 205 %Seq 100.00
Highlighted IDENTICAL residue LEU 129 index1 737 path 206 %Seq 100.00
Highlighted IDENTICAL residue VAL 130 index1 738 path 207 %Seq 100.00
Highlighted IDENTICAL residue ALA 131 index1 739 path 208 %Seq 100.00
Highlighted IDENTICAL residue VAL 134 index1 742 path 211 %Seq 100.00
Highlighted IDENTICAL residue VAL 136 index1 744 path 213 %Seq 100.00
Highlighted IDENTICAL residue LYS 139 index1 747 path 216 %Seq 100.00
Highlighted IDENTICAL residue SER 140 index1 748 path 217 %Seq 100.00
Highlighted IDENTICAL residue ASP 143 index1 751 path 221 %Seq 100.00
Highlighted IDENTICAL residue GLN 145 index1 753 path 223 %Seq 100.00
Highlighted IDENTICAL residue TYR 146 index1 754 path 224 %Seq 100.00
Highlighted IDENTICAL residue TRP 148 index1 756 path 226 %Seq 100.00
Highlighted IDENTICAL residue GLU 149 index1 757 path 227 %Seq 100.00
Highlighted IDENTICAL residue SER 150 index1 758 path 228 %Seq 100.00
Highlighted IDENTICAL residue ALA 152 index1 760 path 230 %Seq 100.00
Highlighted IDENTICAL residue SER 155 index1 763 path 233 %Seq 100.00
Highlighted IDENTICAL residue ARG 169 index1 777 path 249 %Seq 100.00
Highlighted IDENTICAL residue GLY 170 index1 778 path 250 %Seq 100.00
Highlighted IDENTICAL residue THR 171 index1 779 path 251 %Seq 100.00
Highlighted IDENTICAL residue LEU 175 index1 783 path 255 %Seq 100.00
Highlighted IDENTICAL residue LEU 177 index1 785 path 257 %Seq 100.00
Highlighted IDENTICAL residue ASP 179 index1 787 path 260 %Seq 100.00
Highlighted IDENTICAL residue ASP 180 index1 788 path 261 %Seq 100.00
Highlighted IDENTICAL residue GLU 183 index1 791 path 264 %Seq 100.00
Highlighted IDENTICAL residue GLU 186 index1 794 path 267 %Seq 100.00
Highlighted IDENTICAL residue ARG 189 index1 797 path 270 %Seq 100.00
Highlighted IDENTICAL residue ILE 190 index1 798 path 271 %Seq 100.00
Highlighted IDENTICAL residue LYS 191 index1 799 path 272 %Seq 100.00
Highlighted IDENTICAL residue LYS 195 index1 803 path 276 %Seq 100.00
Highlighted IDENTICAL residue SER 198 index1 806 path 279 %Seq 100.00
Highlighted IDENTICAL residue PHE 200 index1 808 path 281 %Seq 100.00
Highlighted IDENTICAL residue VAL 201 index1 809 path 282 %Seq 100.00
Highlighted IDENTICAL residue PRO 204 index1 812 path 285 %Seq 100.00
Highlighted IDENTICAL residue ILE 205 index1 813 path 286 %Seq 100.00
Highlighted IDENTICAL residue LYS 211 index1 819 path 292 %Seq 100.00
Highlighted IDENTICAL residue LEU 270 index1 833 path 311 %Seq 50.00
Highlighted IDENTICAL residue THR 273 index1 836 path 343 %Seq 100.00
Highlighted IDENTICAL residue LYS 274 index1 837 path 344 %Seq 100.00
Highlighted IDENTICAL residue PRO 275 index1 838 path 345 %Seq 100.00
Highlighted IDENTICAL residue LEU 276 index1 839 path 346 %Seq 100.00
Highlighted IDENTICAL residue TRP 277 index1 840 path 347 %Seq 100.00
Highlighted IDENTICAL residue ARG 279 index1 842 path 349 %Seq 100.00
Highlighted IDENTICAL residue ASN 280 index1 843 path 350 %Seq 100.00
Highlighted IDENTICAL residue GLU 288 index1 851 path 358 %Seq 100.00
Highlighted IDENTICAL residue TYR 289 index1 852 path 359 %Seq 100.00
Highlighted IDENTICAL residue ASN 290 index1 853 path 360 %Seq 100.00
Highlighted IDENTICAL residue PHE 292 index1 855 path 362 %Seq 100.00
Highlighted IDENTICAL residue TYR 293 index1 856 path 363 %Seq 100.00
Highlighted IDENTICAL residue LYS 294 index1 857 path 364 %Seq 100.00
Highlighted IDENTICAL residue ASN 298 index1 861 path 368 %Seq 100.00
Highlighted IDENTICAL residue ASP 302 index1 865 path 372 %Seq 100.00
Highlighted IDENTICAL residue PRO 303 index1 866 path 373 %Seq 100.00
Highlighted IDENTICAL residue LEU 304 index1 867 path 374 %Seq 100.00
Highlighted IDENTICAL residue HIS 308 index1 871 path 378 %Seq 100.00
Highlighted IDENTICAL residue PHE 309 index1 872 path 379 %Seq 100.00
Highlighted IDENTICAL residue GLU 312 index1 875 path 382 %Seq 100.00
Highlighted IDENTICAL residue GLY 313 index1 876 path 383 %Seq 100.00
Highlighted IDENTICAL residue GLU 316 index1 879 path 386 %Seq 100.00
Highlighted IDENTICAL residue PHE 317 index1 880 path 387 %Seq 100.00
Highlighted IDENTICAL residue ARG 318 index1 881 path 388 %Seq 100.00
Highlighted IDENTICAL residue ILE 320 index1 883 path 390 %Seq 100.00
Highlighted IDENTICAL residue LEU 321 index1 884 path 391 %Seq 100.00
Highlighted IDENTICAL residue ILE 323 index1 886 path 393 %Seq 100.00
Highlighted IDENTICAL residue PRO 324 index1 887 path 394 %Seq 100.00
Highlighted IDENTICAL residue PRO 328 index1 891 path 398 %Seq 100.00
Highlighted IDENTICAL residue LYS 337 index1 900 path 408 %Seq 100.00
Highlighted IDENTICAL residue ASN 340 index1 903 path 411 %Seq 100.00
Highlighted IDENTICAL residue ILE 341 index1 904 path 412 %Seq 100.00
Highlighted IDENTICAL residue LEU 343 index1 906 path 414 %Seq 100.00
Highlighted IDENTICAL residue TYR 344 index1 907 path 415 %Seq 100.00
Highlighted IDENTICAL residue VAL 345 index1 908 path 416 %Seq 100.00
Highlighted IDENTICAL residue ARG 347 index1 910 path 418 %Seq 100.00
Highlighted IDENTICAL residue VAL 348 index1 911 path 419 %Seq 100.00
Highlighted IDENTICAL residue PHE 349 index1 912 path 420 %Seq 100.00
Highlighted IDENTICAL residue ILE 350 index1 913 path 421 %Seq 100.00
Highlighted IDENTICAL residue ASP 352 index1 915 path 423 %Seq 100.00
Highlighted IDENTICAL residue LEU 357 index1 920 path 429 %Seq 100.00
Highlighted IDENTICAL residue PRO 359 index1 922 path 431 %Seq 100.00
Highlighted IDENTICAL residue LEU 362 index1 925 path 434 %Seq 100.00
Highlighted IDENTICAL residue SER 363 index1 926 path 435 %Seq 100.00
Highlighted IDENTICAL residue PHE 364 index1 927 path 436 %Seq 100.00
Highlighted IDENTICAL residue VAL 365 index1 928 path 437 %Seq 100.00
Highlighted IDENTICAL residue LYS 366 index1 929 path 438 %Seq 100.00
Highlighted IDENTICAL residue GLY 367 index1 930 path 439 %Seq 100.00
Highlighted IDENTICAL residue VAL 368 index1 931 path 440 %Seq 100.00
Highlighted IDENTICAL residue VAL 369 index1 932 path 441 %Seq 100.00
Highlighted IDENTICAL residue ASP 370 index1 933 path 442 %Seq 100.00
Highlighted IDENTICAL residue SER 371 index1 934 path 443 %Seq 100.00
Highlighted IDENTICAL residue ASP 373 index1 936 path 445 %Seq 100.00
Highlighted IDENTICAL residue LEU 374 index1 937 path 446 %Seq 100.00
Highlighted IDENTICAL residue PRO 375 index1 938 path 447 %Seq 100.00
Highlighted IDENTICAL residue LEU 376 index1 939 path 448 %Seq 100.00
Highlighted IDENTICAL residue ASN 377 index1 940 path 449 %Seq 100.00
Highlighted IDENTICAL residue SER 379 index1 942 path 451 %Seq 100.00
Highlighted IDENTICAL residue ARG 380 index1 943 path 452 %Seq 100.00
Highlighted IDENTICAL residue GLU 381 index1 944 path 453 %Seq 100.00
Highlighted IDENTICAL residue LEU 383 index1 946 path 455 %Seq 100.00
Highlighted IDENTICAL residue GLN 384 index1 947 path 456 %Seq 100.00
Highlighted IDENTICAL residue ILE 388 index1 951 path 460 %Seq 100.00
Highlighted IDENTICAL residue ARG 393 index1 956 path 465 %Seq 100.00
Highlighted IDENTICAL residue LYS 394 index1 957 path 466 %Seq 100.00
Highlighted IDENTICAL residue LYS 399 index1 962 path 471 %Seq 100.00
Highlighted IDENTICAL residue GLU 406 index1 969 path 478 %Seq 100.00
Highlighted IDENTICAL residue ILE 407 index1 970 path 479 %Seq 100.00
Highlighted IDENTICAL residue GLU 409 index1 972 path 483 %Seq 100.00
Highlighted IDENTICAL residue GLU 412 index1 975 path 486 %Seq 100.00
Highlighted IDENTICAL residue LYS 416 index1 979 path 490 %Seq 100.00
Highlighted IDENTICAL residue PHE 417 index1 980 path 491 %Seq 100.00
Highlighted IDENTICAL residue PHE 421 index1 984 path 495 %Seq 100.00
Highlighted IDENTICAL residue LYS 426 index1 989 path 500 %Seq 100.00
Highlighted IDENTICAL residue LEU 427 index1 990 path 501 %Seq 100.00
Highlighted IDENTICAL residue GLY 428 index1 991 path 502 %Seq 100.00
Highlighted IDENTICAL residue GLU 431 index1 994 path 505 %Seq 100.00
Highlighted IDENTICAL residue ASP 432 index1 995 path 506 %Seq 100.00
Highlighted IDENTICAL residue THR 433 index1 996 path 507 %Seq 100.00
Highlighted IDENTICAL residue ASN 435 index1 998 path 509 %Seq 100.00
Highlighted IDENTICAL residue LEU 442 index1 1005 path 516 %Seq 100.00
Highlighted IDENTICAL residue LEU 443 index1 1006 path 517 %Seq 100.00
Highlighted IDENTICAL residue ARG 444 index1 1007 path 518 %Seq 100.00
Highlighted IDENTICAL residue SER 447 index1 1010 path 521 %Seq 100.00
Highlighted IDENTICAL residue LYS 449 index1 1012 path 523 %Seq 100.00
Highlighted IDENTICAL residue GLU 453 index1 1016 path 527 %Seq 100.00
Highlighted IDENTICAL residue LEU 454 index1 1017 path 528 %Seq 100.00
Highlighted IDENTICAL residue THR 455 index1 1018 path 529 %Seq 100.00
Highlighted IDENTICAL residue SER 456 index1 1019 path 530 %Seq 100.00
Highlighted IDENTICAL residue LEU 457 index1 1020 path 531 %Seq 100.00
Highlighted IDENTICAL residue ASP 459 index1 1022 path 533 %Seq 100.00
Highlighted IDENTICAL residue TYR 460 index1 1023 path 534 %Seq 100.00
Highlighted IDENTICAL residue MET 464 index1 1027 path 538 %Seq 100.00
Highlighted IDENTICAL residue GLU 466 index1 1029 path 540 %Seq 100.00
Highlighted IDENTICAL residue GLN 468 index1 1031 path 542 %Seq 100.00
Highlighted IDENTICAL residue LYS 469 index1 1032 path 543 %Seq 100.00
Highlighted IDENTICAL residue ILE 471 index1 1034 path 545 %Seq 100.00
Highlighted IDENTICAL residue TYR 472 index1 1035 path 546 %Seq 100.00
Highlighted IDENTICAL residue TYR 473 index1 1036 path 547 %Seq 100.00
Highlighted IDENTICAL residue SER 478 index1 1041 path 552 %Seq 100.00
Highlighted IDENTICAL residue LEU 479 index1 1042 path 553 %Seq 100.00
Highlighted IDENTICAL residue LYS 480 index1 1043 path 554 %Seq 100.00
Highlighted IDENTICAL residue PRO 486 index1 1049 path 560 %Seq 100.00
Highlighted IDENTICAL residue PHE 487 index1 1050 path 561 %Seq 100.00
Highlighted IDENTICAL residue LEU 488 index1 1051 path 562 %Seq 100.00
Highlighted IDENTICAL residue LEU 491 index1 1054 path 565 %Seq 100.00
Highlighted IDENTICAL residue LYS 494 index1 1057 path 568 %Seq 100.00
Highlighted IDENTICAL residue GLU 497 index1 1060 path 571 %Seq 100.00
Highlighted IDENTICAL residue VAL 498 index1 1061 path 572 %Seq 100.00
Highlighted IDENTICAL residue LEU 499 index1 1062 path 573 %Seq 100.00
Highlighted IDENTICAL residue LEU 501 index1 1064 path 575 %Seq 100.00
Highlighted IDENTICAL residue PRO 504 index1 1067 path 578 %Seq 100.00
Highlighted IDENTICAL residue ILE 505 index1 1068 path 579 %Seq 100.00
Highlighted IDENTICAL residue ASP 506 index1 1069 path 580 %Seq 100.00
Highlighted IDENTICAL residue GLU 507 index1 1070 path 581 %Seq 100.00
Highlighted IDENTICAL residue ALA 509 index1 1072 path 583 %Seq 100.00
Highlighted IDENTICAL residue LEU 513 index1 1076 path 587 %Seq 100.00
Highlighted IDENTICAL residue LYS 519 index1 1082 path 593 %Seq 100.00
Highlighted IDENTICAL residue VAL 522 index1 1085 path 596 %Seq 100.00
Highlighted IDENTICAL residue ASP 523 index1 1086 path 597 %Seq 100.00
Highlighted IDENTICAL residue ILE 524 index1 1087 path 598 %Seq 100.00
Highlighted IDENTICAL residue LYS 526 index1 1089 path 600 %Seq 100.00
Highlighted IDENTICAL residue PHE 528 index1 1091 path 602 %Seq 50.00
Highlighted IDENTICAL residue LEU 530 index1 1093 path 604 %Seq 100.00
Highlighted IDENTICAL residue GLU 531 index1 1094 path 605 %Seq 100.00
Highlighted IDENTICAL residue ASP 534 index1 1097 path 608 %Seq 100.00
Highlighted IDENTICAL residue GLU 535 index1 1098 path 609 %Seq 100.00
Highlighted IDENTICAL residue GLU 546 index1 1109 path 620 %Seq 100.00
Highlighted IDENTICAL residue LEU 550 index1 1113 path 624 %Seq 100.00
Highlighted IDENTICAL residue LYS 555 index1 1118 path 629 %Seq 100.00
Highlighted IDENTICAL residue LEU 558 index1 1121 path 632 %Seq 100.00
Highlighted IDENTICAL residue GLY 559 index1 1122 path 633 %Seq 100.00
Highlighted IDENTICAL residue ASP 560 index1 1123 path 634 %Seq 100.00
Highlighted IDENTICAL residue VAL 562 index1 1125 path 636 %Seq 100.00
Highlighted IDENTICAL residue LYS 564 index1 1127 path 638 %Seq 100.00
Highlighted IDENTICAL residue VAL 565 index1 1128 path 639 %Seq 100.00
Highlighted IDENTICAL residue VAL 567 index1 1130 path 641 %Seq 100.00
Highlighted IDENTICAL residue SER 568 index1 1131 path 642 %Seq 100.00
Highlighted IDENTICAL residue LEU 571 index1 1134 path 645 %Seq 100.00
Highlighted IDENTICAL residue PRO 575 index1 1138 path 649 %Seq 100.00
Highlighted IDENTICAL residue GLY 581 index1 1144 path 655 %Seq 100.00
Highlighted IDENTICAL residue PHE 583 index1 1146 path 657 %Seq 100.00
Highlighted IDENTICAL residue GLY 584 index1 1147 path 658 %Seq 100.00
Highlighted IDENTICAL residue TRP 585 index1 1148 path 659 %Seq 100.00
Highlighted IDENTICAL residue SER 586 index1 1149 path 660 %Seq 100.00
Highlighted IDENTICAL residue ALA 587 index1 1150 path 661 %Seq 100.00
Highlighted IDENTICAL residue ASN 588 index1 1151 path 662 %Seq 100.00
Highlighted IDENTICAL residue MET 589 index1 1152 path 663 %Seq 100.00
Highlighted IDENTICAL residue GLU 590 index1 1153 path 664 %Seq 100.00
Highlighted IDENTICAL residue ARG 591 index1 1154 path 665 %Seq 100.00
Highlighted IDENTICAL residue MET 593 index1 1156 path 667 %Seq 100.00
Highlighted IDENTICAL residue LYS 594 index1 1157 path 668 %Seq 100.00
Highlighted IDENTICAL residue ALA 595 index1 1158 path 669 %Seq 100.00
Highlighted IDENTICAL residue GLN 596 index1 1159 path 670 %Seq 100.00
Highlighted IDENTICAL residue ALA 597 index1 1160 path 671 %Seq 100.00
Highlighted IDENTICAL residue GLU 614 index1 1164 path 688 %Seq 100.00
Highlighted IDENTICAL residue ILE 615 index1 1165 path 689 %Seq 100.00
Highlighted IDENTICAL residue PRO 617 index1 1167 path 691 %Seq 100.00
Highlighted IDENTICAL residue PRO 620 index1 1170 path 694 %Seq 100.00
Highlighted IDENTICAL residue ILE 621 index1 1171 path 695 %Seq 100.00
Highlighted IDENTICAL residue ILE 622 index1 1172 path 696 %Seq 100.00
Highlighted IDENTICAL residue LYS 623 index1 1173 path 697 %Seq 100.00
Highlighted IDENTICAL residue LEU 625 index1 1175 path 699 %Seq 100.00
Highlighted IDENTICAL residue GLY 632 index1 1182 path 706 %Seq 50.00
Highlighted IDENTICAL residue LEU 645 index1 1195 path 719 %Seq 100.00
Highlighted IDENTICAL residue LEU 646 index1 1196 path 720 %Seq 100.00
Highlighted IDENTICAL residue TYR 647 index1 1197 path 721 %Seq 100.00
Highlighted IDENTICAL residue THR 649 index1 1199 path 723 %Seq 100.00
Highlighted IDENTICAL residue ALA 650 index1 1200 path 724 %Seq 100.00
Highlighted IDENTICAL residue SER 654 index1 1204 path 728 %Seq 100.00
Highlighted IDENTICAL residue GLY 655 index1 1205 path 729 %Seq 100.00
Highlighted IDENTICAL residue PHE 656 index1 1206 path 730 %Seq 100.00
Highlighted IDENTICAL residue ASP 659 index1 1209 path 733 %Seq 100.00
Highlighted IDENTICAL residue PRO 661 index1 1211 path 735 %Seq 100.00
Highlighted IDENTICAL residue ILE 668 index1 1218 path 742 %Seq 100.00
Highlighted 284 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g04030-1-2cg9A.pir.txt.2CG9.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g04030-1-2cg9A.pir.txt PIR amino_acid 2CG9.pdb A 100.0 BLOSUM62.dat 
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@