At2g04270.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g04270-1-2bx2L.pir.txt
======================================================
Assigned types to 996 residues in Sequence 2-4270-1, 14 remain unknown
Assigned types to 515 residues in Sequence 2bx2L, 495 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Translated sequence file At2g04270-1-2bx2L.pir.txt into sequence alignment.
======================================================
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
>2BX2.pdb Made from 4076 ATOM records in 2BX2.pdb
AHIEGRHMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYK
GKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPNIKDVLREGQEV
IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIELKEALA
SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL
IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI
KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS
ARGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT
GTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN
AIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM
XXXXXXXXXXXXXX
======================================================
Best alignment:
2BX2.pdb 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG---GIS 140
 +R+G ++IVQ+ KE G KG LT + L + VL+ R G IS
2-4270-1 534 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKIS 583
2BX2.pdb 140 --RRIELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW--- 185
 R LK +L+ P+G GL VRT G S E LQ DL L W 
2-4270-1 584 GVERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNI 632
2BX2.pdb 185 -----EAIKKAAE--SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 228
 A A E P L+H+ + +DY + ++++D+P
2-4270-1 633 TDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 682
2BX2.pdb 229 KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 278
 + ++ + PD ++++L+ IPLF Y+IE +IE + V 
2-4270-1 683 RTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVP 731
2BX2.pdb 279 LPSGGSIVIDSTEALTAIDINSA-----RGDIEETA-FNTNLEAADEIAR 322
 L +GGS+VI+ TEAL +ID+N +G+ +E A NL AA +IAR
2-4270-1 732 LSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 781
2BX2.pdb 323 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF 372
 ++RLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR 
2-4270-1 782 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRH 831
2BX2.pdb 373 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 408
 GL+E++R+R+ PS+ C C TG V E+
2-4270-1 832 GLMEITRKRVRPSVTFMISEPCSCCHATGRVEALET 867
======================================================
Highlighted IDENTICAL residue ARG 95 index1 95 path 545 %Seq 100.00
Highlighted IDENTICAL residue GLY 97 index1 97 path 547 %Seq 100.00
Highlighted IDENTICAL residue ILE 101 index1 101 path 551 %Seq 100.00
Highlighted IDENTICAL residue VAL 102 index1 102 path 552 %Seq 100.00
Highlighted IDENTICAL residue GLN 103 index1 103 path 553 %Seq 100.00
Highlighted IDENTICAL residue LYS 106 index1 106 path 556 %Seq 100.00
Highlighted IDENTICAL residue GLU 107 index1 107 path 557 %Seq 100.00
Highlighted IDENTICAL residue GLY 110 index1 110 path 560 %Seq 100.00
Highlighted IDENTICAL residue LYS 112 index1 112 path 562 %Seq 100.00
Highlighted IDENTICAL residue GLY 113 index1 113 path 563 %Seq 100.00
Highlighted IDENTICAL residue LEU 116 index1 116 path 566 %Seq 100.00
Highlighted IDENTICAL residue THR 117 index1 117 path 567 %Seq 100.00
Highlighted IDENTICAL residue LEU 122 index1 122 path 572 %Seq 100.00
Highlighted IDENTICAL residue VAL 128 index1 128 path 578 %Seq 100.00
Highlighted IDENTICAL residue LEU 129 index1 129 path 579 %Seq 100.00
Highlighted IDENTICAL residue ARG 135 index1 135 path 585 %Seq 100.00
Highlighted IDENTICAL residue GLY 137 index1 137 path 588 %Seq 100.00
Highlighted IDENTICAL residue ILE 139 index1 139 path 593 %Seq 100.00
Highlighted IDENTICAL residue ARG 142 index1 142 path 598 %Seq 100.00
Highlighted IDENTICAL residue ILE 143 index1 143 path 599 %Seq 100.00
Highlighted IDENTICAL residue LEU 151 index1 145 path 601 %Seq 100.00
Highlighted IDENTICAL residue LYS 152 index1 146 path 602 %Seq 100.00
Highlighted IDENTICAL residue LEU 158 index1 152 path 608 %Seq 100.00
Highlighted IDENTICAL residue PRO 161 index1 155 path 611 %Seq 100.00
Highlighted IDENTICAL residue GLY 163 index1 157 path 613 %Seq 100.00
Highlighted IDENTICAL residue GLY 165 index1 159 path 615 %Seq 100.00
Highlighted IDENTICAL residue LEU 166 index1 160 path 616 %Seq 100.00
Highlighted IDENTICAL residue VAL 168 index1 162 path 618 %Seq 100.00
Highlighted IDENTICAL residue ARG 169 index1 163 path 619 %Seq 100.00
Highlighted IDENTICAL residue THR 170 index1 164 path 620 %Seq 100.00
Highlighted IDENTICAL residue GLY 174 index1 168 path 624 %Seq 100.00
Highlighted IDENTICAL residue SER 176 index1 170 path 626 %Seq 100.00
Highlighted IDENTICAL residue GLU 178 index1 172 path 628 %Seq 100.00
Highlighted IDENTICAL residue LEU 180 index1 174 path 630 %Seq 100.00
Highlighted IDENTICAL residue GLN 181 index1 175 path 631 %Seq 100.00
Highlighted IDENTICAL residue ASP 183 index1 177 path 633 %Seq 100.00
Highlighted IDENTICAL residue LEU 184 index1 178 path 634 %Seq 100.00
Highlighted IDENTICAL residue LEU 188 index1 182 path 638 %Seq 100.00
Highlighted IDENTICAL residue TRP 191 index1 185 path 641 %Seq 100.00
Highlighted IDENTICAL residue GLU 192 index1 186 path 650 %Seq 100.00
Highlighted IDENTICAL residue ILE 194 index1 188 path 652 %Seq 50.00
Highlighted IDENTICAL residue LYS 195 index1 189 path 653 %Seq 50.00
Highlighted IDENTICAL residue LYS 196 index1 190 path 654 %Seq 50.00
Highlighted IDENTICAL residue ALA 197 index1 191 path 655 %Seq 50.00
Highlighted IDENTICAL residue ALA 198 index1 192 path 656 %Seq 50.00
Highlighted IDENTICAL residue GLU 199 index1 193 path 657 %Seq 50.00
Highlighted IDENTICAL residue SER 200 index1 194 path 660 %Seq 50.00
Highlighted IDENTICAL residue ARG 201 index1 195 path 661 %Seq 50.00
Highlighted IDENTICAL residue PRO 204 index1 198 path 664 %Seq 100.00
Highlighted IDENTICAL residue LEU 206 index1 200 path 666 %Seq 100.00
Highlighted IDENTICAL residue HIS 208 index1 202 path 668 %Seq 100.00
Highlighted IDENTICAL residue ASP 220 index1 214 path 680 %Seq 100.00
Highlighted IDENTICAL residue TYR 221 index1 215 path 681 %Seq 100.00
Highlighted IDENTICAL residue ASP 232 index1 226 path 692 %Seq 100.00
Highlighted IDENTICAL residue PRO 234 index1 228 path 694 %Seq 100.00
Highlighted IDENTICAL residue PRO 250 index1 244 path 710 %Seq 100.00
Highlighted IDENTICAL residue ASP 251 index1 245 path 711 %Seq 100.00
Highlighted IDENTICAL residue LEU 258 index1 252 path 718 %Seq 100.00
Highlighted IDENTICAL residue ILE 263 index1 257 path 723 %Seq 100.00
Highlighted IDENTICAL residue PRO 264 index1 258 path 724 %Seq 100.00
Highlighted IDENTICAL residue LEU 265 index1 259 path 725 %Seq 100.00
Highlighted IDENTICAL residue PHE 266 index1 260 path 726 %Seq 100.00
Highlighted IDENTICAL residue TYR 269 index1 263 path 729 %Seq 100.00
Highlighted IDENTICAL residue ILE 271 index1 265 path 731 %Seq 100.00
Highlighted IDENTICAL residue GLU 272 index1 266 path 732 %Seq 100.00
Highlighted IDENTICAL residue ILE 275 index1 269 path 735 %Seq 100.00
Highlighted IDENTICAL residue GLU 276 index1 270 path 736 %Seq 100.00
Highlighted IDENTICAL residue VAL 283 index1 277 path 743 %Seq 100.00
Highlighted IDENTICAL residue LEU 285 index1 279 path 745 %Seq 100.00
Highlighted IDENTICAL residue GLY 288 index1 282 path 748 %Seq 100.00
Highlighted IDENTICAL residue GLY 289 index1 283 path 749 %Seq 100.00
Highlighted IDENTICAL residue SER 290 index1 284 path 750 %Seq 100.00
Highlighted IDENTICAL residue VAL 292 index1 286 path 752 %Seq 100.00
Highlighted IDENTICAL residue ILE 293 index1 287 path 753 %Seq 100.00
Highlighted IDENTICAL residue THR 296 index1 290 path 756 %Seq 100.00
Highlighted IDENTICAL residue GLU 297 index1 291 path 757 %Seq 100.00
Highlighted IDENTICAL residue ALA 298 index1 292 path 758 %Seq 100.00
Highlighted IDENTICAL residue LEU 299 index1 293 path 759 %Seq 100.00
Highlighted IDENTICAL residue ILE 302 index1 296 path 762 %Seq 100.00
Highlighted IDENTICAL residue ASP 303 index1 297 path 763 %Seq 100.00
Highlighted IDENTICAL residue ASN 305 index1 299 path 765 %Seq 100.00
Highlighted IDENTICAL residue GLY 313 index1 303 path 774 %Seq 100.00
Highlighted IDENTICAL residue GLU 317 index1 307 path 778 %Seq 100.00
Highlighted IDENTICAL residue ASN 323 index1 313 path 785 %Seq 100.00
Highlighted IDENTICAL residue LEU 324 index1 314 path 786 %Seq 100.00
Highlighted IDENTICAL residue ALA 326 index1 316 path 788 %Seq 100.00
Highlighted IDENTICAL residue ALA 327 index1 317 path 789 %Seq 100.00
Highlighted IDENTICAL residue ILE 330 index1 320 path 792 %Seq 100.00
Highlighted IDENTICAL residue ALA 331 index1 321 path 793 %Seq 100.00
Highlighted IDENTICAL residue ARG 332 index1 322 path 794 %Seq 100.00
Highlighted IDENTICAL residue ARG 335 index1 325 path 797 %Seq 100.00
Highlighted IDENTICAL residue LEU 336 index1 326 path 798 %Seq 100.00
Highlighted IDENTICAL residue ARG 337 index1 327 path 799 %Seq 100.00
Highlighted IDENTICAL residue ASP 338 index1 328 path 800 %Seq 100.00
Highlighted IDENTICAL residue GLY 340 index1 330 path 802 %Seq 100.00
Highlighted IDENTICAL residue GLY 341 index1 331 path 803 %Seq 100.00
Highlighted IDENTICAL residue ILE 343 index1 333 path 805 %Seq 100.00
Highlighted IDENTICAL residue VAL 344 index1 334 path 806 %Seq 100.00
Highlighted IDENTICAL residue ASP 346 index1 336 path 808 %Seq 100.00
Highlighted IDENTICAL residue PHE 347 index1 337 path 809 %Seq 100.00
Highlighted IDENTICAL residue ILE 348 index1 338 path 810 %Seq 100.00
Highlighted IDENTICAL residue ASP 349 index1 339 path 811 %Seq 100.00
Highlighted IDENTICAL residue MET 350 index1 340 path 812 %Seq 100.00
Highlighted IDENTICAL residue ARG 357 index1 347 path 819 %Seq 100.00
Highlighted IDENTICAL residue VAL 359 index1 349 path 821 %Seq 100.00
Highlighted IDENTICAL residue ALA 366 index1 356 path 828 %Seq 100.00
Highlighted IDENTICAL residue VAL 367 index1 357 path 829 %Seq 100.00
Highlighted IDENTICAL residue ASP 370 index1 360 path 832 %Seq 100.00
Highlighted IDENTICAL residue ARG 371 index1 361 path 833 %Seq 100.00
Highlighted IDENTICAL residue SER 377 index1 367 path 839 %Seq 100.00
Highlighted IDENTICAL residue SER 380 index1 370 path 842 %Seq 100.00
Highlighted IDENTICAL residue ARG 381 index1 371 path 843 %Seq 100.00
Highlighted IDENTICAL residue GLY 383 index1 373 path 845 %Seq 100.00
Highlighted IDENTICAL residue LEU 384 index1 374 path 846 %Seq 100.00
Highlighted IDENTICAL residue GLU 386 index1 376 path 848 %Seq 100.00
Highlighted IDENTICAL residue ARG 389 index1 379 path 851 %Seq 100.00
Highlighted IDENTICAL residue ARG 391 index1 381 path 853 %Seq 100.00
Highlighted IDENTICAL residue PRO 394 index1 384 path 856 %Seq 100.00
Highlighted IDENTICAL residue SER 395 index1 385 path 857 %Seq 100.00
Highlighted IDENTICAL residue CYS 404 index1 394 path 866 %Seq 100.00
Highlighted IDENTICAL residue CYS 407 index1 397 path 869 %Seq 100.00
Highlighted IDENTICAL residue THR 410 index1 400 path 872 %Seq 100.00
Highlighted IDENTICAL residue GLY 411 index1 401 path 873 %Seq 100.00
Highlighted IDENTICAL residue VAL 413 index1 403 path 875 %Seq 100.00
Highlighted IDENTICAL residue GLU 417 index1 407 path 879 %Seq 100.00
Highlighted 125 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g04270-1-2bx2L.pir.txt.2BX2.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g04270-1-2bx2L.pir.txt PIR amino_acid 2BX2.pdb A 100.0 BLOSUM62.dat 
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@