At2g02950.1/PDB

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Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g02950-1c3gA.pir.txt
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Assigned types to 439 residues in Sequence 2-02950, 2 remain unknown
Assigned types to 97 residues in Sequence 1c3gA, 344 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g02950-1c3gA.pir.txt into sequence alignment.
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>1C3G.pdb Made from 1346 ATOM records in 1C3G.pdb
ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGT
KITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKES
LLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLI
VKYKVDYPISLNDAQKRAID
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Best alignment:
1C3G.pdb 18 KKKSFKIGRKGPHGASEKTQ 37
 K KSF+ R+ + + TQ
2-02950 413 KPKSFETRRRISNSSISHTQ 432
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Highlighted IDENTICAL residue LYS 197 index1 18 path 415 %Seq 50.00
Highlighted IDENTICAL residue LYS 198 index1 19 path 416 %Seq 50.00
Highlighted IDENTICAL residue LYS 199 index1 20 path 417 %Seq 50.00
Highlighted IDENTICAL residue SER 200 index1 21 path 418 %Seq 50.00
Highlighted IDENTICAL residue PHE 201 index1 22 path 419 %Seq 50.00
Highlighted IDENTICAL residue LYS 202 index1 23 path 420 %Seq 50.00
Highlighted IDENTICAL residue ILE 203 index1 24 path 421 %Seq 50.00
Highlighted IDENTICAL residue GLY 204 index1 25 path 422 %Seq 50.00
Highlighted IDENTICAL residue ARG 205 index1 26 path 423 %Seq 50.00
Highlighted IDENTICAL residue LYS 206 index1 27 path 424 %Seq 50.00
Highlighted IDENTICAL residue GLY 207 index1 28 path 425 %Seq 50.00
Highlighted IDENTICAL residue PRO 208 index1 29 path 426 %Seq 50.00
Highlighted IDENTICAL residue HIS 209 index1 30 path 427 %Seq 50.00
Highlighted IDENTICAL residue GLY 210 index1 31 path 428 %Seq 50.00
Highlighted IDENTICAL residue ALA 211 index1 32 path 429 %Seq 50.00
Highlighted IDENTICAL residue SER 212 index1 33 path 430 %Seq 50.00
Highlighted IDENTICAL residue GLU 213 index1 34 path 431 %Seq 50.00
Highlighted IDENTICAL residue LYS 214 index1 35 path 432 %Seq 50.00
Highlighted IDENTICAL residue THR 215 index1 36 path 433 %Seq 50.00
Highlighted IDENTICAL residue GLN 216 index1 37 path 434 %Seq 50.00
Highlighted 20 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g02950-1c3gA.pir.txt.1C3G.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g02950-1c3gA.pir.txt PIR amino_acid 1C3G.pdb A 100.0 BLOSUM62.dat 
completed successfully.
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