At2g09910.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g09910-1clg_A.pir.txt
======================================================
Assigned types to 985 residues in Sequence 2-09910, 4 remain unknown
Assigned types to 280 residues in Sequence 1c1g_A, 709 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 641 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 642 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 682 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 735 All residues are positively and negatively charged
Translated sequence file At2g09910-1clg_A.pir.txt into sequence alignment.
======================================================
>1C1G.pdb Made from 9160 ATOM records in 1C1G.pdb
MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKL
KATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD
RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE
AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTV
TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE
KSIDDLEDELYAQKLKYKAISEELDHALNDMTSIMDAIKKKMQMLKLDKE
NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD
AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA
EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA
RKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQ
KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK
YKAISEELDHALNDMTSIMDAIKKKMQMLKLDKENALDRADEAEADKKAA
EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE
ADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIES
RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER
AELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL
KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT
SIMDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQK
KLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEE
LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL
KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIK
TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK
LEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI
======================================================
Best alignment:
1C1G.pdb 26 EADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS-EALK-DAQEKLEL 73
 +A + E+ + L+ E + + A +D+ S E + D+Q++ L
2-09910 313 QAQRPPIEEETHPLDGEAATSNPPVSAGPSGVDQVSHETVNPDSQDRTRL 362
1C1G.pdb 74 AEKKATDA-EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122
 A E ++ +Q+ E E+ + A + A A +E
2-09910 363 EGADVVPAQEIAECDQSQSVQVVEPEIQNVTSDRSIA---VYAAVPAGEE 409
1C1G.pdb 123 SERGMKVIESRAQKDEEKMEIQEIQLKE-AKHIAEDADRKYEEVARKLVI 171
 G+ +++ + E++E +E K +A + ++ A +
2-09910 410 VNTGLVIVDQDKDETVEELETSRRSREEKGKGVANQSKKRSASEAGLDEV 459
1C1G.pdb 172 IESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221
 R L+ + + K + ++ EA + + 
2-09910 460 AAPKTFRLSRGETLNSDQFSFKYSGAKFL---VRDQEAASHLWRNLMLPG 506
1C1G.pdb 222 EEEIKVLSD-KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 270
 ++ L D LKE + + L + D KL + 
2-09910 507 TKDFPNLDDLVLKEGYQKFARSSLETAALANDLIATYDRKLKLKLADREA 556
1C1G.pdb 271 SEELDHALNDMTSIMDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRS 320
 + L + +I K+M L+ E + K R 
2-09910 557 FDNLKKCADQAKAIYAKDMKEMAALRDAAEIHKAEMSSLNDEVKRLNGRE 606
1C1G.pdb 321 KQLEDELVSLQKKLKATEDELDKYSEALK-DAQEKLELAEKKATDAEADV 369
 L+ E+ LQ L A ++ +K L+ D K+ KKA V
2-09910 607 ADLQKEISDLQVALVAVKEHGEKECNRLRNDLVAKVARTTKKAQARLDKV 656
1C1G.pdb 369 -ASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRA 418
 A L + L ++D E A +++E ++A DE + VIE 
2-09910 657 KAYLKEQEDLVGPKVD--VENQAKGAEEIELTKRATDE-VNALNVIE--L 701
1C1G.pdb 419 QKDEEKMEIQEIQ-LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 467
 D+ M ++ L++A IA AD V ++ SD+ R E 
2-09910 702 GDDDLNMSPDQLGFLRQASQIAPVADHHSSNV---DLVSGSDIRRMESAG 748
1C1G.pdb 468 ELS 470
 S
2-09910 749 SSS 751
======================================================
Highlighted IDENTICAL residue GLU 26 index1 26 path 313 %Seq 50.00
Highlighted IDENTICAL residue ALA 27 index1 27 path 314 %Seq 50.00
Highlighted IDENTICAL residue ASP 28 index1 28 path 315 %Seq 50.00
Highlighted IDENTICAL residue LYS 29 index1 29 path 316 %Seq 50.00
Highlighted IDENTICAL residue LYS 30 index1 30 path 317 %Seq 50.00
Highlighted IDENTICAL residue ALA 31 index1 31 path 318 %Seq 50.00
Highlighted IDENTICAL residue ALA 32 index1 32 path 319 %Seq 50.00
Highlighted IDENTICAL residue GLU 33 index1 33 path 320 %Seq 50.00
Highlighted IDENTICAL residue ASP 34 index1 34 path 321 %Seq 50.00
Highlighted IDENTICAL residue ARG 35 index1 35 path 322 %Seq 50.00
Highlighted IDENTICAL residue SER 36 index1 36 path 323 %Seq 50.00
Highlighted IDENTICAL residue LYS 37 index1 37 path 324 %Seq 50.00
Highlighted IDENTICAL residue GLN 38 index1 38 path 325 %Seq 50.00
Highlighted IDENTICAL residue LEU 39 index1 39 path 326 %Seq 50.00
Highlighted IDENTICAL residue GLU 40 index1 40 path 327 %Seq 50.00
Highlighted IDENTICAL residue ASP 41 index1 41 path 328 %Seq 50.00
Highlighted IDENTICAL residue GLU 42 index1 42 path 329 %Seq 50.00
Highlighted IDENTICAL residue LEU 43 index1 43 path 330 %Seq 50.00
Highlighted IDENTICAL residue VAL 44 index1 44 path 331 %Seq 50.00
Highlighted IDENTICAL residue SER 45 index1 45 path 332 %Seq 50.00
Highlighted IDENTICAL residue LEU 46 index1 46 path 333 %Seq 50.00
Highlighted IDENTICAL residue GLN 47 index1 47 path 334 %Seq 50.00
Highlighted IDENTICAL residue LYS 48 index1 48 path 335 %Seq 50.00
Highlighted IDENTICAL residue LYS 49 index1 49 path 336 %Seq 50.00
Highlighted IDENTICAL residue LEU 50 index1 50 path 337 %Seq 50.00
Highlighted IDENTICAL residue LYS 51 index1 51 path 338 %Seq 50.00
Highlighted IDENTICAL residue ALA 52 index1 52 path 339 %Seq 50.00
Highlighted IDENTICAL residue THR 53 index1 53 path 340 %Seq 50.00
Highlighted IDENTICAL residue GLU 54 index1 54 path 341 %Seq 50.00
Highlighted IDENTICAL residue ASP 55 index1 55 path 342 %Seq 50.00
Highlighted IDENTICAL residue GLU 56 index1 56 path 343 %Seq 50.00
Highlighted IDENTICAL residue LEU 57 index1 57 path 344 %Seq 50.00
Highlighted IDENTICAL residue ASP 58 index1 58 path 345 %Seq 50.00
Highlighted IDENTICAL residue LYS 59 index1 59 path 346 %Seq 50.00
Highlighted IDENTICAL residue TYR 60 index1 60 path 347 %Seq 50.00
Highlighted IDENTICAL residue SER 61 index1 61 path 348 %Seq 50.00
Highlighted IDENTICAL residue GLU 62 index1 62 path 350 %Seq 50.00
Highlighted IDENTICAL residue ALA 63 index1 63 path 351 %Seq 50.00
Highlighted IDENTICAL residue LEU 64 index1 64 path 352 %Seq 50.00
Highlighted IDENTICAL residue LYS 65 index1 65 path 353 %Seq 50.00
Highlighted IDENTICAL residue ASP 66 index1 66 path 355 %Seq 50.00
Highlighted IDENTICAL residue ALA 67 index1 67 path 356 %Seq 50.00
Highlighted IDENTICAL residue GLN 68 index1 68 path 357 %Seq 50.00
Highlighted IDENTICAL residue GLU 69 index1 69 path 358 %Seq 50.00
Highlighted IDENTICAL residue LYS 70 index1 70 path 359 %Seq 50.00
Highlighted IDENTICAL residue LEU 71 index1 71 path 360 %Seq 50.00
Highlighted IDENTICAL residue GLU 72 index1 72 path 361 %Seq 50.00
Highlighted IDENTICAL residue LEU 73 index1 73 path 362 %Seq 50.00
Highlighted IDENTICAL residue ALA 74 index1 74 path 363 %Seq 50.00
Highlighted IDENTICAL residue GLU 75 index1 75 path 364 %Seq 50.00
Highlighted IDENTICAL residue LYS 76 index1 76 path 365 %Seq 50.00
Highlighted IDENTICAL residue LYS 77 index1 77 path 366 %Seq 50.00
Highlighted IDENTICAL residue ALA 78 index1 78 path 367 %Seq 50.00
Highlighted IDENTICAL residue THR 79 index1 79 path 368 %Seq 50.00
Highlighted IDENTICAL residue ASP 80 index1 80 path 369 %Seq 50.00
Highlighted IDENTICAL residue ALA 81 index1 81 path 370 %Seq 50.00
Highlighted IDENTICAL residue GLU 82 index1 82 path 372 %Seq 50.00
Highlighted IDENTICAL residue ALA 83 index1 83 path 373 %Seq 50.00
Highlighted IDENTICAL residue ASP 84 index1 84 path 374 %Seq 50.00
Highlighted IDENTICAL residue VAL 85 index1 85 path 375 %Seq 50.00
Highlighted IDENTICAL residue ALA 86 index1 86 path 376 %Seq 50.00
Highlighted IDENTICAL residue SER 87 index1 87 path 377 %Seq 50.00
Highlighted IDENTICAL residue LEU 88 index1 88 path 378 %Seq 50.00
Highlighted IDENTICAL residue ASN 89 index1 89 path 379 %Seq 50.00
Highlighted IDENTICAL residue ARG 90 index1 90 path 380 %Seq 50.00
Highlighted IDENTICAL residue ARG 91 index1 91 path 381 %Seq 50.00
Highlighted IDENTICAL residue ILE 92 index1 92 path 382 %Seq 50.00
Highlighted IDENTICAL residue GLN 93 index1 93 path 383 %Seq 50.00
Highlighted IDENTICAL residue LEU 94 index1 94 path 384 %Seq 50.00
Highlighted IDENTICAL residue PHE 95 index1 95 path 385 %Seq 50.00
Highlighted IDENTICAL residue GLU 96 index1 96 path 386 %Seq 50.00
Highlighted IDENTICAL residue GLU 97 index1 97 path 387 %Seq 50.00
Highlighted IDENTICAL residue GLU 98 index1 98 path 388 %Seq 50.00
Highlighted IDENTICAL residue LEU 99 index1 99 path 389 %Seq 50.00
Highlighted IDENTICAL residue ASP 100 index1 100 path 390 %Seq 50.00
Highlighted IDENTICAL residue ARG 101 index1 101 path 391 %Seq 50.00
Highlighted IDENTICAL residue ALA 102 index1 102 path 392 %Seq 50.00
Highlighted IDENTICAL residue GLN 103 index1 103 path 393 %Seq 50.00
Highlighted IDENTICAL residue GLU 104 index1 104 path 394 %Seq 50.00
Highlighted IDENTICAL residue ARG 105 index1 105 path 395 %Seq 50.00
Highlighted IDENTICAL residue LEU 106 index1 106 path 396 %Seq 50.00
Highlighted IDENTICAL residue ALA 107 index1 107 path 397 %Seq 50.00
Highlighted IDENTICAL residue THR 108 index1 108 path 398 %Seq 50.00
Highlighted IDENTICAL residue ALA 109 index1 109 path 399 %Seq 50.00
Highlighted IDENTICAL residue LEU 113 index1 113 path 400 %Seq 50.00
Highlighted IDENTICAL residue GLU 114 index1 114 path 401 %Seq 50.00
Highlighted IDENTICAL residue GLU 115 index1 115 path 402 %Seq 50.00
Highlighted IDENTICAL residue ALA 116 index1 116 path 403 %Seq 50.00
Highlighted IDENTICAL residue GLU 117 index1 117 path 404 %Seq 50.00
Highlighted IDENTICAL residue LYS 118 index1 118 path 405 %Seq 50.00
Highlighted IDENTICAL residue ALA 119 index1 119 path 406 %Seq 50.00
Highlighted IDENTICAL residue ALA 120 index1 120 path 407 %Seq 50.00
Highlighted IDENTICAL residue ASP 121 index1 121 path 408 %Seq 50.00
Highlighted IDENTICAL residue GLU 122 index1 122 path 409 %Seq 50.00
Highlighted IDENTICAL residue SER 123 index1 123 path 410 %Seq 50.00
Highlighted IDENTICAL residue GLU 124 index1 124 path 411 %Seq 50.00
Highlighted IDENTICAL residue ARG 125 index1 125 path 412 %Seq 50.00
Highlighted IDENTICAL residue GLY 126 index1 126 path 413 %Seq 50.00
Highlighted IDENTICAL residue MET 127 index1 127 path 414 %Seq 50.00
Highlighted IDENTICAL residue LYS 128 index1 128 path 415 %Seq 50.00
Highlighted IDENTICAL residue VAL 129 index1 129 path 416 %Seq 50.00
Highlighted IDENTICAL residue ILE 130 index1 130 path 417 %Seq 50.00
Highlighted IDENTICAL residue GLU 131 index1 131 path 418 %Seq 50.00
Highlighted IDENTICAL residue SER 132 index1 132 path 419 %Seq 50.00
Highlighted IDENTICAL residue ARG 133 index1 133 path 420 %Seq 50.00
Highlighted IDENTICAL residue ALA 134 index1 134 path 421 %Seq 50.00
Highlighted IDENTICAL residue GLN 135 index1 135 path 422 %Seq 50.00
Highlighted IDENTICAL residue LYS 136 index1 136 path 423 %Seq 50.00
Highlighted IDENTICAL residue ASP 137 index1 137 path 424 %Seq 50.00
Highlighted IDENTICAL residue GLU 138 index1 138 path 425 %Seq 50.00
Highlighted IDENTICAL residue GLU 139 index1 139 path 426 %Seq 50.00
Highlighted IDENTICAL residue LYS 140 index1 140 path 427 %Seq 50.00
Highlighted IDENTICAL residue MET 141 index1 141 path 428 %Seq 50.00
Highlighted IDENTICAL residue GLU 142 index1 142 path 429 %Seq 50.00
Highlighted IDENTICAL residue ILE 143 index1 143 path 430 %Seq 50.00
Highlighted IDENTICAL residue GLN 144 index1 144 path 431 %Seq 50.00
Highlighted IDENTICAL residue GLU 145 index1 145 path 432 %Seq 50.00
Highlighted IDENTICAL residue ILE 146 index1 146 path 433 %Seq 50.00
Highlighted IDENTICAL residue GLN 147 index1 147 path 434 %Seq 50.00
Highlighted IDENTICAL residue LEU 148 index1 148 path 435 %Seq 50.00
Highlighted IDENTICAL residue LYS 149 index1 149 path 436 %Seq 50.00
Highlighted IDENTICAL residue GLU 150 index1 150 path 437 %Seq 50.00
Highlighted IDENTICAL residue ALA 151 index1 151 path 439 %Seq 50.00
Highlighted IDENTICAL residue LYS 152 index1 152 path 440 %Seq 50.00
Highlighted IDENTICAL residue HIS 153 index1 153 path 441 %Seq 50.00
Highlighted IDENTICAL residue ILE 154 index1 154 path 442 %Seq 50.00
Highlighted IDENTICAL residue ALA 155 index1 155 path 443 %Seq 50.00
Highlighted IDENTICAL residue GLU 156 index1 156 path 444 %Seq 50.00
Highlighted IDENTICAL residue ASP 157 index1 157 path 445 %Seq 50.00
Highlighted IDENTICAL residue ALA 158 index1 158 path 446 %Seq 50.00
Highlighted IDENTICAL residue ASP 159 index1 159 path 447 %Seq 50.00
Highlighted IDENTICAL residue ARG 160 index1 160 path 448 %Seq 50.00
Highlighted IDENTICAL residue LYS 161 index1 161 path 449 %Seq 50.00
Highlighted IDENTICAL residue TYR 162 index1 162 path 450 %Seq 50.00
Highlighted IDENTICAL residue GLU 163 index1 163 path 451 %Seq 50.00
Highlighted IDENTICAL residue GLU 164 index1 164 path 452 %Seq 50.00
Highlighted IDENTICAL residue VAL 165 index1 165 path 453 %Seq 50.00
Highlighted IDENTICAL residue ALA 166 index1 166 path 454 %Seq 50.00
Highlighted IDENTICAL residue ARG 167 index1 167 path 455 %Seq 50.00
Highlighted IDENTICAL residue LYS 168 index1 168 path 456 %Seq 50.00
Highlighted IDENTICAL residue LEU 169 index1 169 path 457 %Seq 50.00
Highlighted IDENTICAL residue VAL 170 index1 170 path 458 %Seq 50.00
Highlighted IDENTICAL residue ILE 171 index1 171 path 459 %Seq 50.00
Highlighted IDENTICAL residue ILE 172 index1 172 path 460 %Seq 50.00
Highlighted IDENTICAL residue GLU 173 index1 173 path 461 %Seq 50.00
Highlighted IDENTICAL residue SER 174 index1 174 path 462 %Seq 50.00
Highlighted IDENTICAL residue ASP 175 index1 175 path 463 %Seq 50.00
Highlighted IDENTICAL residue LEU 176 index1 176 path 464 %Seq 50.00
Highlighted IDENTICAL residue GLU 177 index1 177 path 465 %Seq 50.00
Highlighted IDENTICAL residue ARG 178 index1 178 path 466 %Seq 50.00
Highlighted IDENTICAL residue ALA 179 index1 179 path 467 %Seq 50.00
Highlighted IDENTICAL residue GLU 180 index1 180 path 468 %Seq 50.00
Highlighted IDENTICAL residue GLU 181 index1 181 path 469 %Seq 50.00
Highlighted IDENTICAL residue ARG 182 index1 182 path 470 %Seq 50.00
Highlighted IDENTICAL residue ALA 183 index1 183 path 471 %Seq 50.00
Highlighted IDENTICAL residue GLU 184 index1 184 path 472 %Seq 50.00
Highlighted IDENTICAL residue LEU 185 index1 185 path 473 %Seq 50.00
Highlighted IDENTICAL residue SER 186 index1 186 path 474 %Seq 50.00
Highlighted IDENTICAL residue GLU 187 index1 187 path 475 %Seq 50.00
Highlighted IDENTICAL residue GLY 188 index1 188 path 476 %Seq 50.00
Highlighted IDENTICAL residue LYS 189 index1 189 path 477 %Seq 50.00
Highlighted IDENTICAL residue CYS 190 index1 190 path 478 %Seq 50.00
Highlighted IDENTICAL residue ALA 191 index1 191 path 479 %Seq 50.00
Highlighted IDENTICAL residue GLU 192 index1 192 path 480 %Seq 50.00
Highlighted IDENTICAL residue LEU 193 index1 193 path 481 %Seq 50.00
Highlighted IDENTICAL residue GLU 194 index1 194 path 482 %Seq 50.00
Highlighted IDENTICAL residue GLU 195 index1 195 path 483 %Seq 50.00
Highlighted IDENTICAL residue GLU 196 index1 196 path 484 %Seq 50.00
Highlighted IDENTICAL residue ILE 197 index1 197 path 485 %Seq 50.00
Highlighted IDENTICAL residue LYS 198 index1 198 path 486 %Seq 50.00
Highlighted IDENTICAL residue THR 199 index1 199 path 487 %Seq 50.00
Highlighted IDENTICAL residue VAL 200 index1 200 path 488 %Seq 50.00
Highlighted IDENTICAL residue LEU 204 index1 204 path 489 %Seq 50.00
Highlighted IDENTICAL residue LYS 205 index1 205 path 490 %Seq 50.00
Highlighted IDENTICAL residue SER 206 index1 206 path 491 %Seq 50.00
Highlighted IDENTICAL residue LEU 207 index1 207 path 492 %Seq 50.00
Highlighted IDENTICAL residue GLU 208 index1 208 path 493 %Seq 50.00
Highlighted IDENTICAL residue ALA 209 index1 209 path 494 %Seq 50.00
Highlighted IDENTICAL residue GLN 210 index1 210 path 495 %Seq 50.00
Highlighted IDENTICAL residue ALA 211 index1 211 path 496 %Seq 50.00
Highlighted IDENTICAL residue GLU 212 index1 212 path 497 %Seq 50.00
Highlighted IDENTICAL residue LYS 213 index1 213 path 498 %Seq 50.00
Highlighted IDENTICAL residue TYR 214 index1 214 path 499 %Seq 50.00
Highlighted IDENTICAL residue SER 215 index1 215 path 500 %Seq 50.00
Highlighted IDENTICAL residue GLN 216 index1 216 path 501 %Seq 50.00
Highlighted IDENTICAL residue LYS 217 index1 217 path 502 %Seq 50.00
Highlighted IDENTICAL residue GLU 218 index1 218 path 503 %Seq 50.00
Highlighted IDENTICAL residue ASP 219 index1 219 path 504 %Seq 50.00
Highlighted IDENTICAL residue LYS 220 index1 220 path 505 %Seq 50.00
Highlighted IDENTICAL residue TYR 221 index1 221 path 506 %Seq 50.00
Highlighted IDENTICAL residue GLU 222 index1 222 path 507 %Seq 50.00
Highlighted IDENTICAL residue GLU 223 index1 223 path 508 %Seq 50.00
Highlighted IDENTICAL residue GLU 224 index1 224 path 509 %Seq 50.00
Highlighted IDENTICAL residue ILE 225 index1 225 path 510 %Seq 50.00
Highlighted IDENTICAL residue LYS 226 index1 226 path 511 %Seq 50.00
Highlighted IDENTICAL residue VAL 227 index1 227 path 512 %Seq 50.00
Highlighted IDENTICAL residue LEU 228 index1 228 path 513 %Seq 50.00
Highlighted IDENTICAL residue SER 229 index1 229 path 514 %Seq 50.00
Highlighted IDENTICAL residue ASP 230 index1 230 path 515 %Seq 50.00
Highlighted IDENTICAL residue LYS 231 index1 231 path 517 %Seq 50.00
Highlighted IDENTICAL residue LEU 232 index1 232 path 518 %Seq 50.00
Highlighted IDENTICAL residue LYS 233 index1 233 path 519 %Seq 50.00
Highlighted IDENTICAL residue GLU 234 index1 234 path 520 %Seq 50.00
Highlighted IDENTICAL residue ALA 235 index1 235 path 521 %Seq 50.00
Highlighted IDENTICAL residue GLU 236 index1 236 path 522 %Seq 50.00
Highlighted IDENTICAL residue THR 237 index1 237 path 523 %Seq 50.00
Highlighted IDENTICAL residue ARG 238 index1 238 path 524 %Seq 50.00
Highlighted IDENTICAL residue ALA 239 index1 239 path 525 %Seq 50.00
Highlighted IDENTICAL residue GLU 240 index1 240 path 526 %Seq 50.00
Highlighted IDENTICAL residue PHE 241 index1 241 path 527 %Seq 50.00
Highlighted IDENTICAL residue ALA 242 index1 242 path 528 %Seq 50.00
Highlighted IDENTICAL residue GLU 243 index1 243 path 529 %Seq 50.00
Highlighted IDENTICAL residue ARG 244 index1 244 path 530 %Seq 50.00
Highlighted IDENTICAL residue SER 245 index1 245 path 531 %Seq 50.00
Highlighted IDENTICAL residue VAL 246 index1 246 path 532 %Seq 50.00
Highlighted IDENTICAL residue THR 247 index1 247 path 533 %Seq 50.00
Highlighted IDENTICAL residue LYS 248 index1 248 path 534 %Seq 50.00
Highlighted IDENTICAL residue LEU 249 index1 249 path 535 %Seq 50.00
Highlighted IDENTICAL residue GLU 250 index1 250 path 536 %Seq 50.00
Highlighted IDENTICAL residue LYS 251 index1 251 path 537 %Seq 50.00
Highlighted IDENTICAL residue SER 252 index1 252 path 538 %Seq 50.00
Highlighted IDENTICAL residue ILE 253 index1 253 path 539 %Seq 50.00
Highlighted IDENTICAL residue ASP 254 index1 254 path 540 %Seq 50.00
Highlighted IDENTICAL residue ASP 255 index1 255 path 541 %Seq 50.00
Highlighted IDENTICAL residue LEU 256 index1 256 path 542 %Seq 50.00
Highlighted IDENTICAL residue GLU 257 index1 257 path 543 %Seq 50.00
Highlighted IDENTICAL residue ASP 258 index1 258 path 544 %Seq 50.00
Highlighted IDENTICAL residue GLU 259 index1 259 path 545 %Seq 50.00
Highlighted IDENTICAL residue LEU 260 index1 260 path 546 %Seq 50.00
Highlighted IDENTICAL residue TYR 261 index1 261 path 547 %Seq 50.00
Highlighted IDENTICAL residue ALA 262 index1 262 path 548 %Seq 50.00
Highlighted IDENTICAL residue GLN 263 index1 263 path 549 %Seq 50.00
Highlighted IDENTICAL residue LYS 264 index1 264 path 550 %Seq 50.00
Highlighted IDENTICAL residue LEU 265 index1 265 path 551 %Seq 50.00
Highlighted IDENTICAL residue LYS 266 index1 266 path 552 %Seq 50.00
Highlighted IDENTICAL residue TYR 267 index1 267 path 553 %Seq 50.00
Highlighted IDENTICAL residue LYS 268 index1 268 path 554 %Seq 50.00
Highlighted IDENTICAL residue ALA 269 index1 269 path 555 %Seq 50.00
Highlighted IDENTICAL residue ILE 270 index1 270 path 556 %Seq 50.00
Highlighted IDENTICAL residue GLU 272 index1 272 path 558 %Seq 100.00
Highlighted IDENTICAL residue ASP 275 index1 275 path 561 %Seq 100.00
Highlighted IDENTICAL residue HIS 276 index1 276 path 562 %Seq 100.00
Highlighted IDENTICAL residue THR 282 index1 282 path 568 %Seq 100.00
Highlighted IDENTICAL residue ALA 309 index1 309 path 595 %Seq 100.00
Highlighted IDENTICAL residue ALA 311 index1 311 path 597 %Seq 100.00
Highlighted IDENTICAL residue ASP 312 index1 312 path 598 %Seq 100.00
Highlighted IDENTICAL residue ALA 316 index1 316 path 602 %Seq 100.00
Highlighted IDENTICAL residue GLU 326 index1 326 path 612 %Seq 100.00
Highlighted IDENTICAL residue LYS 333 index1 333 path 619 %Seq 100.00
Highlighted IDENTICAL residue LEU 334 index1 334 path 620 %Seq 100.00
Highlighted IDENTICAL residue ASP 339 index1 339 path 625 %Seq 100.00
Highlighted IDENTICAL residue ASP 342 index1 342 path 628 %Seq 100.00
Highlighted IDENTICAL residue LEU 357 index1 357 path 646 %Seq 100.00
Highlighted IDENTICAL residue GLU 366 index1 366 path 655 %Seq 100.00
Highlighted IDENTICAL residue ALA 367 index1 367 path 656 %Seq 100.00
Highlighted IDENTICAL residue LEU 372 index1 372 path 662 %Seq 100.00
Highlighted IDENTICAL residue LEU 397 index1 397 path 686 %Seq 100.00
Highlighted IDENTICAL residue GLU 398 index1 398 path 687 %Seq 100.00
Highlighted IDENTICAL residue GLU 406 index1 406 path 695 %Seq 100.00
Highlighted IDENTICAL residue ILE 414 index1 414 path 702 %Seq 100.00
Highlighted IDENTICAL residue ALA 418 index1 418 path 704 %Seq 100.00
Highlighted IDENTICAL residue ALA 435 index1 435 path 722 %Seq 100.00
Highlighted 262 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g09910-1clg_A.pir.txt.1C1G.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g09910-1clg_A.pir.txt PIR amino_acid 1C1G.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@