At2g03850.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g03850-2b9cA.pir.txt
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Assigned types to 191 residues in Sequence 2-03850, 0 remain unknown
Assigned types to 141 residues in Sequence 2b9cB, 50 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g03850-2b9cA.pir.txt into sequence alignment.
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>2B9C.pdb Made from 2301 ATOM records in 2B9C.pdb
ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ
LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL
KTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGQLVEEELDRAQERL
ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS
LEDKVEELLSKNYHLENEVARLKKLVGE
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Best alignment:
2B9C.pdb 108 KSLEDKVEELLSKNYHLENEVARLKKLVGQLVEEELDRAQ----ERLATA 153
 K L+D ++ +EV GQ V + +DRA+ E+ + A
2-03850 67 KWLDDASQKASDYVKEKGSEVGHASAQKGQDVNDHVDRAKYYMFEKASEA 116
2B9C.pdb 154 LQKLEE-AEKAAD-ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 201
 + + E A+ A++ +E+G + + A E+ + + E IA D
2-03850 117 IDNVAEIAQFASEFVTEKGKETKKETASISEKAKDFIVEKAGEIIDIATD 166
2B9C.pdb 202 ADRK 205
 +K
2-03850 167 VSKK 170
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Highlighted IDENTICAL residue ASP 209 index1 112 path 71 %Seq 100.00
Highlighted IDENTICAL residue VAL 211 index1 114 path 73 %Seq 100.00
Highlighted IDENTICAL residue GLU 1098 index1 142 path 101 %Seq 50.00
Highlighted IDENTICAL residue ARG 1105 index1 149 path 112 %Seq 100.00
Highlighted IDENTICAL residue THR 1108 index1 152 path 115 %Seq 100.00
Highlighted IDENTICAL residue GLU 1115 index1 159 path 122 %Seq 50.00
Highlighted IDENTICAL residue ASP 1121 index1 165 path 129 %Seq 100.00
Highlighted IDENTICAL residue GLU 1124 index1 168 path 133 %Seq 100.00
Highlighted IDENTICAL residue ALA 1134 index1 178 path 143 %Seq 100.00
Highlighted IDENTICAL residue GLU 1138 index1 182 path 147 %Seq 100.00
Highlighted IDENTICAL residue MET 1141 index1 185 path 150 %Seq 100.00
Highlighted IDENTICAL residue GLU 1145 index1 189 path 154 %Seq 50.00
Highlighted IDENTICAL residue HIS 1153 index1 197 path 162 %Seq 100.00
Highlighted IDENTICAL residue LYS 1161 index1 205 path 170 %Seq 100.00
Highlighted 14 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g03850-2b9cA.pir.txt.2B9C.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g03850-2b9cA.pir.txt PIR amino_acid 2B9C.pdb A 100.0 BLOSUM62.dat 
completed successfully.
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