At2g02090.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
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Sequence 1
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Sequence 2
Got here 3
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g02090-1z3i_X.pir.txt
======================================================
Assigned types to 763 residues in Sequence 2-02090, 27 remain unknown
Assigned types to 507 residues in Sequence 1z3i_X, 283 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 234 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 235 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 236 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 237 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 265 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 266 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 267 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 268 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 304 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 305 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 431 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 432 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 433 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 434 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 435 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 436 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 437 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 438 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 439 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 440 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 441 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 442 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 443 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 444 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 445 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 627 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 682 All residues are positively and negatively charged
Translated sequence file At2g02090-1z3i_X.pir.txt into sequence alignment.
======================================================
>1Z3I.pdb Made from 5052 ATOM records in 1Z3I.pdb
LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDP
VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI
WTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGS
KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDE
GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGIL
GTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTS
DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL
SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGK
MLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM
SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP
ANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD
EEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDS
DCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR
======================================================
Best alignment:
1Z3I.pdb 49 DPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT 98
 D +L+P+Q GV FL + + IE G I+ADEMGLGKT+Q IT
2-02090 206 DSDFQPILKPYQLVGVNFLL-LLYKKGIE---GAILADEMGLGKTIQAIT 251
1Z3I.pdb 99 LIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDG 148
 + L + + D P +VV P+S++ NW E+ KW + G
2-02090 252 YLTLLSRLNNDPGPH----LVVCPASVLENWERELRKWCPS-FTVLQYHG 296
1Z3I.pdb 149 GSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-------VLHKG 191
 ++ S+ +N +S+ G P +L++ Y F H+E VL + 
2-02090 297 AARAAY-SRELNSLSKAGKPPPFNVLLVCYSLFERHSEQQKDDRKVLKRW 345
1Z3I.pdb 192 KVGLVICDEGHRLKNSDNQTYLALNSM--NAQRRVLISGTPIQNDLLEYF 239
 + V+ DE H LK+ ++ + L S+ NA +R++++GTP+QNDL E +
2-02090 346 RWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELW 395
1Z3I.pdb 240 SLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA-AGEQKLQELI 288
 SL+ F+ I T K+ L D + + ++ G L+ L 
2-02090 396 SLLEFMLPDIFTTENVDLKKL----LNAEDTELITRMKSILGPFILRRLK 441
1Z3I.pdb 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLK-QAKPV 337
 S V + L+ + + + K E + + +K +K +
2-02090 442 SDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSL 491
1Z3I.pdb 338 ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFP-- 385
 SL + T +K+ NHP LI + + E+ A L P 
2-02090 492 NSLAKALPKRQISNYFTQFRKIANHPLLI-RRIYSDEDVIRIARKLHPIG 540
1Z3I.pdb 385 ---QNYSTKAVEPQLSG------KMLVLDYILAMTRTTTSD--------- 417
 S V ++ G L+ Y + T+ T SD 
2-02090 541 AFGFECSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKC 590
1Z3I.pdb 417 ---------------KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSI 452
 +V++ S +T LD+ E Y RLDG+ +
2-02090 591 RTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQV 640
1Z3I.pdb 453 KKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 502
 R IV+ FNN S F +LS++AGG GLNL GA+ +++ D D+NP 
2-02090 641 TDRQTIVDTFNNDKS-IFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQI 689
1Z3I.pdb 503 DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552
 D QA R R GQ K I+RL++ T++E I + K L + V++ 
2-02090 690 DRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESG 739
1Z3I.pdb 553 QDVE 556
 V+
2-02090 740 VHVD 743
======================================================
Highlighted IDENTICAL residue ASP 140 index1 49 path 206 %Seq 100.00
Highlighted IDENTICAL residue LEU 147 index1 56 path 213 %Seq 100.00
Highlighted IDENTICAL residue PRO 149 index1 58 path 215 %Seq 100.00
Highlighted IDENTICAL residue GLN 151 index1 60 path 217 %Seq 100.00
Highlighted IDENTICAL residue GLY 154 index1 63 path 220 %Seq 100.00
Highlighted IDENTICAL residue VAL 155 index1 64 path 221 %Seq 100.00
Highlighted IDENTICAL residue PHE 157 index1 66 path 223 %Seq 100.00
Highlighted IDENTICAL residue LEU 158 index1 67 path 224 %Seq 100.00
Highlighted IDENTICAL residue GLY 172 index1 81 path 238 %Seq 100.00
Highlighted IDENTICAL residue ILE 174 index1 83 path 240 %Seq 100.00
Highlighted IDENTICAL residue ALA 176 index1 85 path 242 %Seq 100.00
Highlighted IDENTICAL residue ASP 177 index1 86 path 243 %Seq 100.00
Highlighted IDENTICAL residue GLU 178 index1 87 path 244 %Seq 100.00
Highlighted IDENTICAL residue MET 179 index1 88 path 245 %Seq 100.00
Highlighted IDENTICAL residue GLY 180 index1 89 path 246 %Seq 100.00
Highlighted IDENTICAL residue LEU 181 index1 90 path 247 %Seq 100.00
Highlighted IDENTICAL residue GLY 182 index1 91 path 248 %Seq 100.00
Highlighted IDENTICAL residue LYS 183 index1 92 path 249 %Seq 100.00
Highlighted IDENTICAL residue THR 184 index1 93 path 250 %Seq 100.00
Highlighted IDENTICAL residue GLN 186 index1 95 path 252 %Seq 100.00
Highlighted IDENTICAL residue ILE 188 index1 97 path 254 %Seq 100.00
Highlighted IDENTICAL residue THR 189 index1 98 path 255 %Seq 100.00
Highlighted IDENTICAL residue LEU 194 index1 103 path 260 %Seq 100.00
Highlighted IDENTICAL residue VAL 210 index1 119 path 276 %Seq 100.00
Highlighted IDENTICAL residue VAL 211 index1 120 path 277 %Seq 100.00
Highlighted IDENTICAL residue PRO 213 index1 122 path 279 %Seq 100.00
Highlighted IDENTICAL residue SER 215 index1 124 path 281 %Seq 100.00
Highlighted IDENTICAL residue ASN 219 index1 128 path 285 %Seq 100.00
Highlighted IDENTICAL residue TRP 220 index1 129 path 286 %Seq 100.00
Highlighted IDENTICAL residue GLU 223 index1 132 path 289 %Seq 100.00
Highlighted IDENTICAL residue LYS 226 index1 135 path 292 %Seq 100.00
Highlighted IDENTICAL residue TRP 227 index1 136 path 293 %Seq 100.00
Highlighted IDENTICAL residue GLY 239 index1 148 path 306 %Seq 100.00
Highlighted IDENTICAL residue SER 247 index1 156 path 313 %Seq 100.00
Highlighted IDENTICAL residue ASN 251 index1 160 path 317 %Seq 100.00
Highlighted IDENTICAL residue SER 254 index1 163 path 320 %Seq 100.00
Highlighted IDENTICAL residue GLY 257 index1 166 path 323 %Seq 100.00
Highlighted IDENTICAL residue PRO 261 index1 170 path 327 %Seq 100.00
Highlighted IDENTICAL residue LEU 265 index1 174 path 331 %Seq 100.00
Highlighted IDENTICAL residue TYR 269 index1 178 path 335 %Seq 100.00
Highlighted IDENTICAL residue PHE 272 index1 181 path 338 %Seq 100.00
Highlighted IDENTICAL residue HIS 275 index1 184 path 341 %Seq 50.00
Highlighted IDENTICAL residue ALA 276 index1 185 path 342 %Seq 50.00
Highlighted IDENTICAL residue GLU 277 index1 186 path 343 %Seq 50.00
Highlighted IDENTICAL residue VAL 278 index1 187 path 351 %Seq 100.00
Highlighted IDENTICAL residue LEU 279 index1 188 path 352 %Seq 100.00
Highlighted IDENTICAL residue VAL 287 index1 196 path 360 %Seq 100.00
Highlighted IDENTICAL residue ASP 290 index1 199 path 363 %Seq 100.00
Highlighted IDENTICAL residue GLU 291 index1 200 path 364 %Seq 100.00
Highlighted IDENTICAL residue HIS 293 index1 202 path 366 %Seq 100.00
Highlighted IDENTICAL residue LEU 295 index1 204 path 368 %Seq 100.00
Highlighted IDENTICAL residue LYS 296 index1 205 path 369 %Seq 100.00
Highlighted IDENTICAL residue LEU 306 index1 215 path 379 %Seq 100.00
Highlighted IDENTICAL residue SER 308 index1 217 path 381 %Seq 100.00
Highlighted IDENTICAL residue ASN 310 index1 219 path 385 %Seq 100.00
Highlighted IDENTICAL residue ALA 311 index1 220 path 386 %Seq 100.00
Highlighted IDENTICAL residue ARG 314 index1 223 path 389 %Seq 100.00
Highlighted IDENTICAL residue GLY 319 index1 228 path 394 %Seq 100.00
Highlighted IDENTICAL residue THR 320 index1 229 path 395 %Seq 100.00
Highlighted IDENTICAL residue PRO 321 index1 230 path 396 %Seq 100.00
Highlighted IDENTICAL residue GLN 323 index1 232 path 398 %Seq 100.00
Highlighted IDENTICAL residue ASN 324 index1 233 path 399 %Seq 100.00
Highlighted IDENTICAL residue ASP 325 index1 234 path 400 %Seq 100.00
Highlighted IDENTICAL residue LEU 326 index1 235 path 401 %Seq 100.00
Highlighted IDENTICAL residue GLU 328 index1 237 path 403 %Seq 100.00
Highlighted IDENTICAL residue SER 331 index1 240 path 406 %Seq 100.00
Highlighted IDENTICAL residue LEU 332 index1 241 path 407 %Seq 100.00
Highlighted IDENTICAL residue PHE 335 index1 244 path 410 %Seq 100.00
Highlighted IDENTICAL residue ILE 340 index1 249 path 415 %Seq 100.00
Highlighted IDENTICAL residue THR 343 index1 252 path 418 %Seq 100.00
Highlighted IDENTICAL residue LYS 349 index1 258 path 424 %Seq 100.00
Highlighted IDENTICAL residue ALA 369 index1 278 path 455 %Seq 100.00
Highlighted IDENTICAL residue GLN 376 index1 285 path 463 %Seq 100.00
Highlighted IDENTICAL residue GLU 377 index1 286 path 464 %Seq 100.00
Highlighted IDENTICAL residue LEU 386 index1 295 path 473 %Seq 100.00
Highlighted IDENTICAL residue ARG 389 index1 298 path 476 %Seq 100.00
Highlighted IDENTICAL residue THR 390 index1 299 path 477 %Seq 100.00
Highlighted IDENTICAL residue ILE 393 index1 302 path 480 %Seq 100.00
Highlighted IDENTICAL residue ILE 402 index1 311 path 489 %Seq 100.00
Highlighted IDENTICAL residue VAL 406 index1 315 path 493 %Seq 100.00
Highlighted IDENTICAL residue CYS 407 index1 316 path 494 %Seq 100.00
Highlighted IDENTICAL residue LEU 420 index1 329 path 507 %Seq 50.00
Highlighted IDENTICAL residue PHE 421 index1 330 path 508 %Seq 50.00
Highlighted IDENTICAL residue LEU 422 index1 331 path 509 %Seq 50.00
Highlighted IDENTICAL residue LYS 423 index1 332 path 510 %Seq 50.00
Highlighted IDENTICAL residue GLN 424 index1 333 path 512 %Seq 50.00
Highlighted IDENTICAL residue ALA 425 index1 334 path 513 %Seq 50.00
Highlighted IDENTICAL residue LYS 426 index1 335 path 514 %Seq 50.00
Highlighted IDENTICAL residue PRO 427 index1 336 path 515 %Seq 50.00
Highlighted IDENTICAL residue VAL 428 index1 337 path 516 %Seq 50.00
Highlighted IDENTICAL residue GLU 429 index1 338 path 517 %Seq 50.00
Highlighted IDENTICAL residue SER 430 index1 339 path 518 %Seq 50.00
Highlighted IDENTICAL residue LEU 431 index1 340 path 519 %Seq 50.00
Highlighted IDENTICAL residue THR 445 index1 354 path 533 %Seq 100.00
Highlighted IDENTICAL residue LYS 449 index1 358 path 537 %Seq 100.00
Highlighted IDENTICAL residue ASN 452 index1 361 path 540 %Seq 100.00
Highlighted IDENTICAL residue HIS 453 index1 362 path 541 %Seq 100.00
Highlighted IDENTICAL residue PRO 454 index1 363 path 542 %Seq 100.00
Highlighted IDENTICAL residue LEU 456 index1 365 path 544 %Seq 100.00
Highlighted IDENTICAL residue ILE 457 index1 366 path 545 %Seq 100.00
Highlighted IDENTICAL residue GLY 467 index1 376 path 554 %Seq 50.00
Highlighted IDENTICAL residue PHE 468 index1 377 path 555 %Seq 50.00
Highlighted IDENTICAL residue ASP 469 index1 378 path 556 %Seq 50.00
Highlighted IDENTICAL residue GLY 470 index1 379 path 557 %Seq 50.00
Highlighted IDENTICAL residue ALA 471 index1 380 path 558 %Seq 50.00
Highlighted IDENTICAL residue LEU 472 index1 381 path 559 %Seq 50.00
Highlighted IDENTICAL residue ASP 473 index1 382 path 560 %Seq 50.00
Highlighted IDENTICAL residue LEU 474 index1 383 path 561 %Seq 50.00
Highlighted IDENTICAL residue PHE 475 index1 384 path 562 %Seq 50.00
Highlighted IDENTICAL residue PRO 476 index1 385 path 563 %Seq 50.00
Highlighted IDENTICAL residue GLN 477 index1 386 path 569 %Seq 50.00
Highlighted IDENTICAL residue ASN 478 index1 387 path 570 %Seq 50.00
Highlighted IDENTICAL residue TYR 479 index1 388 path 571 %Seq 50.00
Highlighted IDENTICAL residue SER 480 index1 389 path 572 %Seq 50.00
Highlighted IDENTICAL residue THR 481 index1 390 path 573 %Seq 50.00
Highlighted IDENTICAL residue LYS 482 index1 391 path 574 %Seq 50.00
Highlighted IDENTICAL residue ALA 483 index1 392 path 575 %Seq 50.00
Highlighted IDENTICAL residue VAL 484 index1 393 path 576 %Seq 50.00
Highlighted IDENTICAL residue GLU 485 index1 394 path 577 %Seq 50.00
Highlighted IDENTICAL residue PRO 486 index1 395 path 578 %Seq 50.00
Highlighted IDENTICAL residue GLN 487 index1 396 path 579 %Seq 50.00
Highlighted IDENTICAL residue LEU 488 index1 397 path 580 %Seq 50.00
Highlighted IDENTICAL residue SER 489 index1 398 path 581 %Seq 50.00
Highlighted IDENTICAL residue GLY 490 index1 399 path 582 %Seq 50.00
Highlighted IDENTICAL residue VAL 510 index1 419 path 633 %Seq 100.00
Highlighted IDENTICAL residue SER 514 index1 423 path 637 %Seq 100.00
Highlighted IDENTICAL residue THR 517 index1 426 path 640 %Seq 100.00
Highlighted IDENTICAL residue LEU 520 index1 429 path 643 %Seq 100.00
Highlighted IDENTICAL residue ASP 521 index1 430 path 644 %Seq 100.00
Highlighted IDENTICAL residue GLU 524 index1 433 path 647 %Seq 100.00
Highlighted IDENTICAL residue TYR 534 index1 443 path 657 %Seq 100.00
Highlighted IDENTICAL residue ARG 536 index1 445 path 659 %Seq 100.00
Highlighted IDENTICAL residue LEU 537 index1 446 path 660 %Seq 100.00
Highlighted IDENTICAL residue ASP 538 index1 447 path 661 %Seq 100.00
Highlighted IDENTICAL residue GLY 539 index1 448 path 662 %Seq 100.00
Highlighted IDENTICAL residue ARG 546 index1 455 path 669 %Seq 100.00
Highlighted IDENTICAL residue ILE 549 index1 458 path 672 %Seq 100.00
Highlighted IDENTICAL residue VAL 550 index1 459 path 673 %Seq 100.00
Highlighted IDENTICAL residue PHE 553 index1 462 path 676 %Seq 100.00
Highlighted IDENTICAL residue ASN 554 index1 463 path 677 %Seq 100.00
Highlighted IDENTICAL residue ASN 555 index1 464 path 678 %Seq 100.00
Highlighted IDENTICAL residue SER 558 index1 467 path 681 %Seq 100.00
Highlighted IDENTICAL residue PHE 561 index1 470 path 684 %Seq 100.00
Highlighted IDENTICAL residue LEU 565 index1 474 path 688 %Seq 100.00
Highlighted IDENTICAL residue SER 566 index1 475 path 689 %Seq 100.00
Highlighted IDENTICAL residue ALA 569 index1 478 path 692 %Seq 100.00
Highlighted IDENTICAL residue GLY 570 index1 479 path 693 %Seq 100.00
Highlighted IDENTICAL residue GLY 571 index1 480 path 694 %Seq 100.00
Highlighted IDENTICAL residue GLY 573 index1 482 path 696 %Seq 100.00
Highlighted IDENTICAL residue LEU 574 index1 483 path 697 %Seq 100.00
Highlighted IDENTICAL residue ASN 575 index1 484 path 698 %Seq 100.00
Highlighted IDENTICAL residue LEU 576 index1 485 path 699 %Seq 100.00
Highlighted IDENTICAL residue GLY 578 index1 487 path 701 %Seq 100.00
Highlighted IDENTICAL residue ALA 579 index1 488 path 702 %Seq 100.00
Highlighted IDENTICAL residue ASP 586 index1 495 path 709 %Seq 100.00
Highlighted IDENTICAL residue ASP 588 index1 497 path 711 %Seq 100.00
Highlighted IDENTICAL residue ASN 590 index1 499 path 713 %Seq 100.00
Highlighted IDENTICAL residue PRO 591 index1 500 path 714 %Seq 100.00
Highlighted IDENTICAL residue ASP 594 index1 503 path 717 %Seq 100.00
Highlighted IDENTICAL residue GLN 596 index1 505 path 719 %Seq 100.00
Highlighted IDENTICAL residue ALA 597 index1 506 path 720 %Seq 100.00
Highlighted IDENTICAL residue ARG 600 index1 509 path 723 %Seq 100.00
Highlighted IDENTICAL residue ARG 603 index1 512 path 726 %Seq 100.00
Highlighted IDENTICAL residue GLY 605 index1 514 path 728 %Seq 100.00
Highlighted IDENTICAL residue GLN 606 index1 515 path 729 %Seq 100.00
Highlighted IDENTICAL residue LYS 608 index1 517 path 731 %Seq 100.00
Highlighted IDENTICAL residue ILE 612 index1 521 path 735 %Seq 100.00
Highlighted IDENTICAL residue ARG 614 index1 523 path 737 %Seq 100.00
Highlighted IDENTICAL residue LEU 615 index1 524 path 738 %Seq 100.00
Highlighted IDENTICAL residue THR 620 index1 529 path 743 %Seq 100.00
Highlighted IDENTICAL residue GLU 623 index1 532 path 746 %Seq 100.00
Highlighted IDENTICAL residue ILE 625 index1 534 path 748 %Seq 100.00
Highlighted IDENTICAL residue LYS 632 index1 541 path 755 %Seq 100.00
Highlighted IDENTICAL residue LEU 635 index1 544 path 758 %Seq 100.00
Highlighted IDENTICAL residue VAL 639 index1 548 path 762 %Seq 100.00
Highlighted IDENTICAL residue ASP 645 index1 554 path 768 %Seq 50.00
Highlighted IDENTICAL residue VAL 646 index1 555 path 769 %Seq 50.00
Highlighted IDENTICAL residue GLU 647 index1 556 path 770 %Seq 50.00
Highlighted 178 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g02090-1z3i_X.pir.txt.1Z3I.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g02090-1z3i_X.pir.txt PIR amino_acid 1Z3I.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@