At2g07710.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
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Sequence 1
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Sequence 2
Got here 3
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g07710-c1ogyb_.pir.txt
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Assigned types to 150 residues in Sequence 2-07710, 6 remain unknown
Assigned types to 126 residues in Sequence c1ogyb_, 30 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g07710-c1ogyb_.pir.txt into sequence alignment.
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>1OGY.pdb Made from 57824 ATOM records in 1OGY.pdb
Error in function WYRM_fprintf_sequence_in_FASTA_format()
num_residues 7336 is outside bounds [ 0, 7000 ]
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Best alignment:
1OGY.pdb 393 DMVVTNPEHRA 403
 D+VV +P H +
2-07710 78 DLVVESPHHHS 88
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Highlighted IDENTICAL residue GLU 411 index1 400 path 91 %Seq 100.00
Highlighted 1 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g07710-c1ogyb_.pir.txt.1OGY.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g07710-c1ogyb_.pir.txt PIR amino_acid 1OGY.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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