At2g01650.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g01650_1wj4_A.pir.txt
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Assigned types to 458 residues in Sequence 2-01650, 0 remain unknown
Assigned types to 116 residues in Sequence 1wj4_A, 342 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g01650_1wj4_A.pir.txt into sequence alignment.
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>1WJ4.pdb Made from 1880 ATOM records in 1WJ4.pdb
GSSGSSGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRY
PDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYD
ITLQEAGLCPQETVFVQESGPSSG
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Best alignment:
1WJ4.pdb 43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELL 86
 ++ + +++PDG Q AL + V S P+ +FELL
2-01650 353 RSMIRVQFPDGVVLQGVFAPWEPTFALYEFVSSALKEPSLQFELL 397
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Highlighted IDENTICAL residue PRO 51 index1 51 path 361 %Seq 100.00
Highlighted IDENTICAL residue ASP 52 index1 52 path 362 %Seq 100.00
Highlighted IDENTICAL residue GLY 53 index1 53 path 363 %Seq 100.00
Highlighted IDENTICAL residue GLN 57 index1 57 path 367 %Seq 100.00
Highlighted IDENTICAL residue ALA 68 index1 68 path 378 %Seq 100.00
Highlighted IDENTICAL residue LEU 69 index1 69 path 379 %Seq 100.00
Highlighted IDENTICAL residue VAL 73 index1 73 path 383 %Seq 100.00
Highlighted IDENTICAL residue SER 75 index1 75 path 385 %Seq 100.00
Highlighted IDENTICAL residue PRO 79 index1 79 path 390 %Seq 100.00
Highlighted IDENTICAL residue PHE 83 index1 83 path 394 %Seq 100.00
Highlighted IDENTICAL residue GLU 84 index1 84 path 395 %Seq 100.00
Highlighted IDENTICAL residue LEU 85 index1 85 path 396 %Seq 100.00
Highlighted IDENTICAL residue LEU 86 index1 86 path 397 %Seq 100.00
Highlighted 13 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g01650_1wj4_A.pir.txt.1WJ4.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g01650_1wj4_A.pir.txt PIR amino_acid 1WJ4.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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