Chapter four (UTHPSW)

Authors Note: For my story, the ships like the Eclipse I and II will be modified for less crew and greater efficiency, as
such, there will be differences from Canon/Legends.
Chommell sector, Eclipse Hanger.
They had finally arrived in the Chommell sector and were all exiting Harry's personal ship.
"Welcome, Supreme Commander Potter." Perseus, Harry's High General, said respectfully.
"Thank you, Perseus. I trust we are ready to mobilize immediately?" Harry asked in return, having already put on his Mandalorian Iron battle armor, the possession of which impressed almost everyone.
"We can mobilize immediately, but I advise you to command from the bridge. We will arrive at Naboo very quickly, and it's your party after all and you should decide what gifts are handed out." Perseus replied, beginning to lead everyone to a private turbolift.
"I will be," Harry replied.
"I'll let you, and the Queen and her retinue, take the turbolift up first. I'll make sure everyone gets up and then join you." Perseus said, opening the private turbolift and letting them on first.
Once everyone important was on the bridge, Harry took his personal command seat, and ordered a course be set for the Naboo system.
They arrived a short time later and Harry was informed of one remaining battleship... Which was according to Harry's plan, the Trade Federation sent all the battle droids that they could spare and left them vulnerable; all due to Harry's mental manipulation on Gunray and Haako. That, along with the treaty, would cost the Trade Federation massive amounts of money. Thankfully, had also ensured that they wouldn't commit mass-murder or anything.
"The Droid Control Ship is controlling twenty armies of battle droids, sir!" A technician said fearfully. That was 4,368,000 battle droids! Plus support droids! That would actually increase Naboo's profits from the treaty greatly!
"All ships, concentrate fire on the Droid Control Ship!" Harry ordered, before accessing the superlaser as a last resort. Fortunately, it wasn't required, the deflector shield fell in seconds from concentrated fire from the fleet. "Alright, everyone, you have your orders, begin the re-taking of Naboo!" Harry ordered, and all of the ships began descending into Naboo's atmosphere. The Eclipse was headed directly to Theed and was carrying a force of 300,000.
Minutes later...
The descent was slow, but they were over Theed now and Harry sensed the presence of a Sith, and from the feel of it, an apprentice. Or the Sith had merely weakened due to Harry possession of the greatest Sith relics and Holocrons.
"Your Majesty, I may need to make a detour," Harry said, getting a questioning look from her. "I sense a Sith, which explains recent events quite well. Sadly, all recent events will require extensive meditation and investigation, and maybe
some corrections. I'll eliminate the Sith and rejoin your group."
"I will accompany you. Obi-Wan, you will protect the Queen." Qui-Gon said.
"It won't take long, I should be able to kill him in moments. And you quite frankly can't keep up with me, and I won't slow myself down and give him a chance to escape." Harry replied, before jumping off the ship and landing near the Sith and activating his lightsaber. "Come on out, I can sense your pitiful strength in the Force." The idiot actually tried rushing Harry, but was literally disarmed and then 'dislegged' for his stupidity.
"My grandparents moved faster than that!" Harry said boredly. "But thank you for cooperating... In exchange, I will take any information I want from your mind and make sure it's painful for you." That said, Harry ripped any knowledge relating to the current Sith Lords and their Order from Mauls mind. "Thank you, please don't come again, and enjoy burning in hell." Harry beheaded Maul, having gotten the names of several Sith Lord's and some of his suspicions.
While Harry was dealing with a jumped-up Dark Jedi, his forces were liberating Naboo's people, killing mercenaries and criminals, and disabling the ships of key Trade Federation personnel.
When Harry rejoined Amidala and force protecting her, Nute Gunray and Rune Haako were refusing to sign the treaty that Harry and Padmé had drawn up.
"You will sign that treaty, because that is the closest thing to mercy that you're getting," Harry said, entering the throne room with Maul's body in tow. "Qui-Gon, Obi-Wan, I arranged for communications to be brought up, so that you can inform the Jedi of the Sith's continued existence. His master was Darth Sidious, they use the LiMerge Building in The Works as a base, and this was all orchestrated to advance their agenda of eventually purging the Jedi and taking
control of the Galaxy. I thought you might want to warn them as soon as possible." Harry said, trying to get them out of the room.
"Thank you, Hadrian," Qui-Gon said, before leading Obi-Wan out of the room and taking Maul with them.
"Now, Gunray. You will sign the treaty or I will make it my personal mission to destroy the Trade Federation and all of it's assets." Harry said, before dominating Gunray's mind with Sith Magic and simply forcing him to do it. Outwardly, it merely seemed like Gunray was a colossal coward, which he was, but he seemed like an even bigger one right then. Gunray signed the contracts, and then so did the other Neimoidians, who also required mental domination from Sith Magic.
"We will pay some of the reparations immediately." Gunray said, before accessing Trade Federation accounts and transferring money into Naboo's treasury, Harry's business account, and several others. They ended up losing quadrillions in money, and the treaty would ensure that they lost much much more in other concessions...
Harry was quite pleased to have been reimbursed for his losses, with great interest, by the Trade Federation.
"You may take them to the prison cells," Amidala ordered her guards, who readily obeyed the order and almost dragged the Neimoidians from the throne room in their excitement.
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It was finally the day that Supreme Chancellor Palpatine would be arriving with members of the Jedi High Council, and Harry was quite annoyed that he would be suffering the presence of the silly Jedi; even briefly. Harry had sent most of his forces back to Tatooine, at Padmé's urging, but kept the Eclipse and his army on it at his disposal. He was paranoid and wanted a defense force nearby in case the Trade Federation counter-attacked, and Padmé had thankfully agreed.
Padmé's happiness over having reclaimed Naboo was amazing and intoxicating, and Harry found himself unable to stop smiling. Padmé, however, had to maintain her facade, but Harry could feel how happy she was underneath it. Feeling how happy she was made all the effort that had Harry exerted to liberate Naboo worth it to him.
The new Supreme Chanceller had finally arrived, with several Jedi onboard.
The main ramp of the cruiser was lowered and Qui-Gon, Obi-Wan, and Captain Panaka lead Viceroy Gunray and his assistant toward the ship. The Supreme Chancellor Palpatine and several Republic guards descended the walkway, followed by Yoda and several other Jedi Masters. Harry noticed that none of his former opponents had fully recovered and were likely still on Coruscant in therapy.
"Congratulations on your election, Chancellor. It is so good to see you again." Amidala said in greeting.
"It's good to be home. Your boldness has saved our people, Your Majesty. It is you who should be congratulated. Together we shall bring peace and prosperity to the Republic." Palpatine said.
Qui-Gon greeted Yoda and the other Jedi, while Captain Panaka took the Neimoidians onto the cruiser.
Once everyone had finished with the pleasantry's, Qui-Gon and Obi-Wan, were both lead away... Harry concealed himself and followed them into the Turret Room.
"Meditated and considered, have we, over recent events and your request Master Qui-Gon." Yoda began, pacing before the kneeling Qui-Gon and Obi-Wan. "Confer on Obi-Wan, the level of Jedi Knight the Council does. But agree on you taking this boy as your Padawan learner, I do not."
"Then I will be leaving the Jedi Order and training him without your consent. the Force led me to him for a reason, and I will train him as it is obviously the will of the Force." Qui-Gon began. "If the Jedi ignore the will of the Force, then they are no better the Sith," Qui-Gon said standing, "and I do not kneel before the Sith and I will not serve a body that ignores the will of the Force in favor of their own agenda and beliefs." Yoda and Obi-Wan were both shocked. "Fear leads to the Dark Side Yoda, and you are afraid of a mere possibility. Anakin has the potential for good, as well as evil, and you would
leave him alone and vulnerable."
"Calm yourself, Master Qui-Gon," Yoda said. "Trained will he be, not by you, but by your former Padawan. Fear, we do, that you are falling to the Dark Side or being influenced."
"That influence is called the Force, and I have confidence in my apprentice, but he wasn't led to Anakin by the Force and honestly seems to dislike his mere presence. That would hinder Anakin's potential, and so would your fear of it." Qui-Gon said, while also realizing that Hadrian was right in his evaluation of the Jedi High Council. "Sadly, I know that I can't win against the Jedi Order and Republic... but know that your actions will only cause suffering and death. Your Order will fall and you will have hindered and weakened the one person who could have prevented it."
Qui-Gon, having said his piece, left the Turret Room, while secretly being followed by Harry. Qui-Gon immediately went to speak to Anakin...
"Master Qui-Gon, what's wrong?" Anakin asked, seeing the look on Qui-Gon's face.
"The Council has decided to let Obi-Wan train you. They consider me unfit, but you will become a Jedi, Ani." Qui-Gon said kindly. "I had hoped to train you myself, but Obi-Wan will be a great teacher for you and will help you reach your
potential."
"Thank you, Master Qui-Gon," Anakin said gratefully.
"You are welcome, Ani. If you work hard, you might even become a Jedi Knight within ten years." Qui-Gon said kindly, somewhat hoping that he would work hard so that he could fulfill the prophecy. Anakin nodded, secretly hoping that he
would be. "Goodbye, Ani."
And with that, Qui-Gon left... He left Theed, his former Padawan, and the Jedi Order...
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Phase One, Epilogue.
With Naboo having been reclaimed and the Trade Federation temporarily defeated, Harry and Padmé began improving the planets defensive capabilities... They decided to install a Planetary Shield with a fractional refresh rate, preventing
any spacecraft traveling slower than or at or above light speed from transitioning into the planet's atmosphere, and with a heavily armed Shield Gate. They began the construction of greater defenses for cities and villages and several massive bunkers. Recruitment for a reserve army and Navy was begun, along with improvements to the preexisting Army, Navy, and Space Fighter Corps. Harry donated a lot of weapons, ships, and technology to Naboo and some of it was quite expensive... fortunately Harry had the Star Forge and could make them for free.
Potter Mining and Shipping took over Plasma mining and began splitting profits with Naboo 50/50, which won Harry and Padmé a lot of goodwill and support. The massive budget surplus and Naboo no longer having any debt also greatly helped Padmé gain further support.
Harry had begun to accept that the Force was pulling he and Padmé together, and he quit fighting it so hard. Harry still refused to so much as hug, kiss, or hold hands with her; such a thing would be unacceptable, but they did spend a lot of time together. Harry was completely honest with her and she had still accepted him, with most of Harry's wrong-doing being in the past, and the rest being morally questionable and the recent, being understandable actions to resolve a threat. Eventually, they both realized that they wanted to be together when Padmé was an adult... and so Harry began granting her power to prolong her life. He first gave her Force-sensitivity on par with Yoda, by using a ritual to attract medi-chlorians into her, and then Enhanced it with another that was adapted to Grey from Sith Magic.
That wasn't all he adapted though...
He had recreated the Time Compression Chamber and trained Padmé in secret, with her making incredible progress and proving that she remained a hard worker. She, over the course of ten years, attained skills beyond those of most Jedi, and with the Time Chamber as a resource she could easily surpass them all.
Harry had also felt a monumental shift in the Force, like it was anointing him for a grand purpose, but he felt that a lesser power was also benefiting... Harry quickly realized that one of the Sith Lords had died and he, like he had done for many other Sith and Jedi, summoned the spirit of Darth Plagueis... He forced Plagueis to teach him whatever he wanted and Harry learned that Plagueis had all but created Anakin Skywalker as an experiment. Harry greatly reinforced his mastery of Sith Alchemy, from Plagueis' teachings, and had mastered Plagueis' technique of Midi-chlorian manipulation. 
Harry enjoyed the beginnings of the Separatist Crisis. How could he not? He used it to draw entire sectors to him without having to mobilize an army or send a single assassin! Harry, through sheer political, financial, and military acumen,
acquired forty sectors. Harry's Alliance of Neutral Parties was well-liked, and considered a way for others to say no to both the Republic's and Confederacy's agendas.
It offered companies functional constituency status, but held them to a Code of Conduct, and if they broke it, they would be either fined, expelled, or charged with the appropriate crimes. There was a zero-tolerance policy on corruption and
Harry took measures to ensure that it was quickly exposed and purged, with corrupt officials being banned from service in the Alliance. Taxes were varied: for basic member status a world, system, or sector had to pay a certain amount of tax, and could opt out of military protection and therefore contributing to militaries; refusing to contribute likewise denied them access to the Alliance Army and Navy, and other services deemed unnecessary by the governments. Veto power was merit based and could be granted through loyalty to the Alliance. The Rights of Sentience were made law, and Harry had made both the Alliance Constitution and Charter his masterpieces.
Most importantly, Harry and Padmé married; once her two terms as Queen were up, and they conceived a child. Harry also created a protective amulet for her that emulated the effects of the Gauntlet of Kressh the Younger... Harry wanted to keep her alive for a very long time and hopefully share eternity with her.