Super Smash Bros. Revolution (ZS Project)/Story Mode: Sci-Fi Infiltration

Sci-Fi Infiltration is one of the story paths in the Story Mode of Super Smash Bros. Revolution. It involves multiple characters going through a dark, infested research facility for their own reasons only to realize the deeper, darker secrets within this facility.
Considered one of the more disturbing stories in the game, content-wise, it's also considered one of the harder ones gameplay wise due to the multitude of enemy waves, character battles and numerous boss fights.
==Plot==
Samus is infiltrating a research facility the size of an entire island. While infiltrating the facility, Samus finds a cardboard box and scans it with her X-Ray Scope only to see it empty. Sensing someone, Samus faces back and readies her weapon only to see Snake already aiming at her with his weapon. They nearly fight before being found out by enemy forces. Realizing they have a common enemy, they team up and fight their way through. 
Though successful, Snake tells Samus that they have to be discreet to not alert more attention, so Samus depowers her Varia Suit and sticks with the Zero Suit. While going through the facility, Samus finds out Pikachu was captured again for energy purposes. Snake takes notices of Pikachu, but he notices a blue robot freeing Pikachu. The alarms go off due to it so Snake and Samus both hide while the blue robot faces the upcoming enemy swarm.
The perspective changes to Mega Man and the rescued Pikachu about to face off against the enemy swarm of R.O.B’s and clones of someone, who while female, is not yet known. They succeed and move forward. Mega Man reports to Dr. Light that Pikachu has been freed and will return shortly. However, Pikachu puts Mega Man on alert upon sending someone close by. Mega Man readies his weapon and out comes an agent. Mega Man actually recognizes her as Jill Valentine, agent of S.T.A.R.S. 
Jill tells Mega Man that she was sent to investigate this island because of the rumored cloning experiments happening in this island. Mega Man confirms this considering the female clones he fought against the R.O.B.s and reveals he was sent for the same reason. Both recognize the identity of A.W. To Jill, that means Albert Wesker. To Mega Man, that means Albert Wily. Jill realizes Pikachu was used as an energy source for the cloning experiments. 
More enemies find them, however this time its two mutated black hedgehogs, one with blue liquid and the other with green ooze. Samus reveals herself and uses the arm cannon of the Varia Suit to shoot down the hedgehog with blue liquid while Jill and Mega Man finish off the green ooze hedgehog. Mega Man, Pikachu and Jill move on, while Samus looks at the blue ooze and absorbs it, showcasing a wicked grin and a chuckle.
While Samus and Snake inspect the northern side of the island and Mega Man, Jill, Pikachu and “Samus” inspect the southern side, the perspective goes to the western side. Enemies comprising of clones of a man with silver hair and the women clones appear to be swarming someone, who then uses a Kanji like attack to get them all of them. It’s revealed to be Cloud Strife, who proceeds onward investigating the facility. 
Cloud finds incubation tanks holding different bodies. The bodies include a woman with silver hair codenamed 2B, a red and black hedgehog codenamed Shadow and one who Cloud recognized immediately as Sephiroth. Cloud wonders how or why Sephiroth was either capture or cloned like this before being spotted by Tifa. 
Cloud asks how Tifa managed to get in the facility but is unable to get a response before being attacked by a mutated cyborg ninja named Grey Fox. After taking out the Grey Fox mutation, Cloud proceeds onward while Tifa looks at the incubation tanks, in particular Sephiroth’s, with a menacing smile and laugh.
Proceeding onward, Cloud and Tifa investigate more of the facility while also trying to avoid more enemy encounters. Whilst sneaking around, Tifa begins getting closer to Cloud, worrying about his safety. She hugs him for comfort as she shifts her arm into large tentacles ready to kill Cloud. Before she does, lights come from in front of “Tifa” and is suddenly shot in the arm, releasing Cloud from her grip. Cloud looks back at the shooter and readies the Buster Sword. 
The shooter is someone donned in green armor. Cloud angrily asks why he shot Tifa, only for the shooter to tell Cloud to look behind him to see “Tifa” mutated with a tentacle arm. She clones herself to fight them both as Cloud and the shooter (who Cloud so far calls 117 due to the number on his armor) team up to defeat them.
Upon defeating them, they were both revealed to simply be illusions. 117 simply viewed them as something he calls “The Flood”, with Cloud claiming it was someone called Jenova’s work. Cloud explains that he found incubation tanks with clones inside. 117 realizes that the Flood is mutating those clones and using them as hosts. Both reluctantly work together and continue to investigate the facility for more clues on how the clones are being made, heading back towards the center and intending to go north.
The perspective goes back to Samus and Snake, reaching the upper part of the northern section of the facility. Samus notices an incubation tank holding a body of a alien-like feline who she recognizes as Mewtwo. Snake is very apprehensive of letting him go, but Samus releases him as they’ve met before. Mewtwo, unstable due to the experiments done on him, strikes at Snake but Samus dons the Varia Suit fights him to calm him down. Samus wins the fight and Mewtwo is stable. Mewtwo wakes Snake up and apologizes for attacking him as all three continue to investigate the facility, with Snake still apprehensive about him due to his experiences with psychic users.
The perspective shifts to Mega Man, Pikachu, Jill and “Samus” investigating the southern section of the facility. They investigate a room that contains multiple unfinished yet mutated clones of 2B, Shadow and Sephiroth. A figure comes out of the shadows and destroys the incubation tanks. The figure reveals himself to be the original Shadow. 
Due to the destruction of the clones, the southern facility is set to self-destruct. Before Shadow uses Chaos Control, he notices “Samus” and attacks her, in which she reveals herself to be Dark Samus. Dark Samus fights the group, but is overwhelmed. She retreats while Shadow uses Chaos Control to get themselves out of the room just as the facility blows up. 
The explosion alerts everyone in the base, including the other groups as they go back to the center. Upon returning to the center of the facility, everyone is suspect of the other considering the illusions and betrayals experienced. Mewtwo, using his psychic abilities, could determine that no one would betray the other and told everyone to be at ease. 
Upon catching up with each other’s discoveries, the ground below them caves in. Mewtwo and Shadow use their psychic abilities to save everyone else from the fall. They all descend to find out a hidden facility underneath and they explore it. However as they do, a seeming clone from 2B drops and begins to follow them.
They discover this facility is filled with many incubation tanks that lead to 3 different rooms. The rows of the incubation tanks have designated clones. They realize the only way they can move on is find out what’s in those rooms. However, they get interrupted by the 2B clone. Mewtwo could decipher that this is the real one, but is brainwashed. Mewtwo faces her alone as the others explore the rooms.
The first room the group encountered was already ravaged by someone. However, Cloud seems to notice that the incubation tanks had clones that are similar, leading him to believe that it was Sephiroth. Upon reaching the final room, the group readies themselves when they see Sephiroth next to a mysterious alien creature Cloud recognizes is Jenova. Cloud readies the group to fight both of them, only for Sephiroth to side with the group. Angry that he was cloned by his own mother and disposed of, Sephiroth vows revenge and readies for combat against a massively mutated form of Jenova. 
While Jenova was hindered and reverted to the Tifa form she had, a winged beast takes her and retreats. Samus, 117, Jill, Snake and Mega Man try to shoot at the beast while Pikachu and Shadow try to incapacitate it, but it successfully gets away. Samus recognizes the beast as Ridley and she tells the group to follow him. The intercoms are heard and two voices are heard. Jill and Mega Man recognize the voices as both Albert Wesker and Albert Wily, finally confirming their suspicions. They were also the targets for Master Chief, whom Wesker fully disclosed his identity. Before they take off after them and return to Mewtwo, they are ambushed by two machines named Galleom and Duon with assistance of Elec Man creations from Wily. With their combined efforts, they destroy the machines and march onward.
The group returns to the main room and see Mewtwo and 2B going at it. Mewtwo stops the group any further to let him continue the fight. Mewtwo fights against 2B and wins and fully recovers her from her brainwashing. 2B mentions that Wesker and Wily have been working together with a huge brain and two alien creatures to create perfect clones of multiple specimens. Samus and Cloud recognize them as Mother Brain and Jenova, who was taken away by Ridley. They question the second alien creature as Mewtwo, but Mega Man clarifies it’s not him, as they have seen a blue version of Samus before, confirming Dark Samus’ involvement.
Discussing the next plan of attack, a mechanical roar is heard which Snake recognizes. Knowing what they’re up against, Snake tells everyone to get ready as they go inside the room. The group finds a gigantic robot, who Snake recognizes as Metal Gear REX, infused with a blue energy which Samus recognizes as Phazon. Master Chief says that REX was actually something he was tasked with retrieving. Dark Samus descends to taunt the ensemble, especially Mega Man for falling for her facade before she further strengthens REX and leaves. The group faces off against the Phazon-infused REX and with their combined strength, defeat it.
Metal Gear REX is defeated, however the Phazon infused with it spreads throughout the group, corrupting them and rendering them unable to use some of their abilities without succumbing to corruption. Mewtwo tries to full heal the party but is unable, with him, Shadow and Sephiroth being the only ones immune to the Phazon and only being to only keep the Phazon at bay momentarily. 
Despite the circumstances, the group moves on and proceed to enter Wesker and Wily’s lab, seeing Mother Brain behind them as well as Tifa’Jenova. As the group prepare to fight them, Ridley grabs Samus and takes her high above as Mewtwo, 2B and Shadow try to catch up with them. Cloud, Sephiroth, Jill, Mega Man, Snake, Master Chief and Pikachu fight the outmatched scientists, only for a Flood-infected Mother Brain and a mutated Flood-infested Jenova alongside a Tifa clone to approach and fight them. The entire group takes them on and they manage to win, however Wesker and Wily manage to escape.
Samus, Shadow, Mewtwo & 2B fight a Phazon infused Ridley and a surprise Jenova Tifa clone and succeed, only for Dark Samus to show up to infuse Ridley with more Phazon and to have the Tifa clone fuse him to create a mutated Omega Ridley. Samus & 2B are struggling to maintain their Phazon corruption at bay due to the massive amount however Mewtwo stabilizes it enough for them to slightly use it at the cost of damage. They face Omega Ridley and Dark Samus and succeed, but Samus and 2B fall almost unconscious due to overuse of Phazon but are stable due to Dark Samus’ defeat.
Everyone reunites and Samus and Master Chief call upon their ships to get them out of the facility, to then see a lone Sephiroth clone and what’s left of Jenova. This Sephiroth clone takes and absorbs the remaining Phazon energy from everyone and fuses with Jenova to become Safer Sephiroth. Due to it’s immense power, the party is taken to a different dimension altogether where they face off against the abomination. After defeating Safer Sephiroth, the party is returned to the facility where it’s about to self-destruct. The group manages to get to Master Chief and Samus’s ships on time and successfully escape the now destroyed facility.
==Boss Encounters==
*Duon
*Galleom
*Metal Gear REX
*Jenova
*Omega Ridley
*Safer Sephiroth
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