At2g01110.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/at2g01110_C1kgpa.pir.txt
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Assigned types to 340 residues in Sequence 2-01110, 63 remain unknown
Assigned types to 296 residues in Sequence c1kgpa_, 107 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file at2g01110_C1kgpa.pir.txt into sequence alignment.
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>1KGP.pdb Made from 9676 ATOM records in 1KGP.pdb
SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSND
IQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVY
TNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSY
YNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRD
ESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY
DDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSSNEY
DEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSW
NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIA
FMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD
DPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVH
GYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLG
WTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSSNEYDEYI
ANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMT
PQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMES
VHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLK
KKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYI
GYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTED
VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSSNEYDEYIANHT
DPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQ
LATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAK
SYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVA
STLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKY
QQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRF
LRYNANKALNNLGYEGLFPTDETKVSPAILSSLS
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Best alignment:
1KGP.pdb 23 IPDEKDLEVWDRL 35
 +PD+K++ ++D L
2-01110 105 LPDDKEMTIFDHL 117
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Highlighted IDENTICAL residue PRO 25 index1 24 path 123 %Seq 100.00
Highlighted 1 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/at2g01110_C1kgpa.pir.txt.1KGP.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues at2g01110_C1kgpa.pir.txt PIR amino_acid 1KGP.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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