At2g06520.1/PDB

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Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g06520-2hayA0.pir.txt
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Assigned types to 116 residues in Sequence 2-06520, 90 remain unknown
Assigned types to 217 residues in Sequence 2hayA0, 2 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g06520-2hayA0.pir.txt into sequence alignment.
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>2HAY.pdb Made from 7050 ATOM records in 2HAY.pdb
IHHQIQQALHFRTAVRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFV
VLDNKPIKEEIKPFAWGAQYQLETASHFILLIAEKHARYDSPAIKNSLLR
RGIKEGDGLNSRLKLYESFQKEDDADNPRALFDWTAKQTYIALGNTAALL
GIDTCPIEGFHYDKVNHILAKHNVIDLEKEGIASLSLGYRLRDPKHAQVR
KPKEEVSVVKDQTIHHQIQQALHFRTAVRVYKEEKISDEDLALILDAAWL
SPSSIGLEGWRFVVLDNKPIKEEIKPFAWGAQYQLETASHFILLIAEKHA
RYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDDADNPRALFDWTAK
QTYIALGNTAALLGIDTCPIEGFHYDKVNHILAKHNVIDLEKEGIASLSL
GYRLRDPKHAQVRKPKEEVSVVKTIHHQIQQALHFRTAVRVYKEEKISDE
DLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIKPFAWGAQYQLETAS
HFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDDAD
NPRALFDWTAKQTYIALGNTAALLGIDTCPIEGFHYDKVNHILAKHNVID
LEKEGIASLSLGYRLRDPAQVRKPKEEVSVVKADQTIHHQIQQALHFRTA
VRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIKPF
AWGAQYQLETASHFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLK
LYESFQKEDDADNPRALFDWTAKQTYIALGNTAALLGIDTCPIEGFHYDK
VNHILAKHNVIDLEKEGIASLSLGYRLRDPKHAQVRKPKEEVSVVK
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Best alignment:
2HAY.pdb 74 TASHFILLIAEKHARYDSPAIKNSLL 99
 TAS I IAE SP++KN LL
2-06520 63 TASMVIPEIAEAAGSGISPSLKNFLL 88
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Highlighted IDENTICAL residue HIS 81 index1 77 path 148 %Seq 100.00
Highlighted IDENTICAL residue LEU 84 index1 80 path 151 %Seq 50.00
Highlighted IDENTICAL residue LEU 85 index1 81 path 152 %Seq 50.00
Highlighted IDENTICAL residue ALA 87 index1 83 path 154 %Seq 100.00
Highlighted IDENTICAL residue ALA 91 index1 87 path 158 %Seq 100.00
Highlighted IDENTICAL residue TYR 93 index1 89 path 166 %Seq 100.00
Highlighted IDENTICAL residue ASN 100 index1 96 path 173 %Seq 100.00
Highlighted IDENTICAL residue LEU 103 index1 99 path 176 %Seq 100.00
Highlighted 8 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g06520-2hayA0.pir.txt.2HAY.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g06520-2hayA0.pir.txt PIR amino_acid 2HAY.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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