At2g06040.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g06040-c1fzta_.pir.txt
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Assigned types to 461 residues in Sequence 2-06040, 14 remain unknown
Assigned types to 211 residues in Sequence c1fzta_, 264 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g06040-c1fzta_.pir.txt into sequence alignment.
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>1FZT.pdb Made from 3382 ATOM records in 1FZT.pdb
MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLK
SRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQ
GLNKDDARKKWGAEQVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVP
HILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKD
GKYVSKELIDN
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Best alignment:
1FZT.pdb 36 ETGIKEAKLG---GERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPN 82
 +G + AK G G ++S + FD+ + + ++ C ++EE N
2-06040 89 RSGKRVAKRGVDYGIEIESSKFDFDLKLGESASKTKRVCVDLVEETIVKN 138
1FZT.pdb 83 LETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQ 117
 E+ S L ++ G+ D +KW +V+
2-06040 138 -ESEDSVDLEDK---SSSGVLGDSLAEKWYVVEVE 169
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Highlighted IDENTICAL residue GLU 36 index1 36 path 89 %Seq 50.00
Highlighted IDENTICAL residue THR 37 index1 37 path 90 %Seq 50.00
Highlighted IDENTICAL residue GLY 38 index1 38 path 91 %Seq 50.00
Highlighted IDENTICAL residue ILE 39 index1 39 path 92 %Seq 50.00
Highlighted IDENTICAL residue LYS 40 index1 40 path 93 %Seq 50.00
Highlighted IDENTICAL residue GLU 41 index1 41 path 94 %Seq 50.00
Highlighted IDENTICAL residue ALA 42 index1 42 path 95 %Seq 50.00
Highlighted IDENTICAL residue LYS 43 index1 43 path 96 %Seq 50.00
Highlighted IDENTICAL residue LEU 44 index1 44 path 97 %Seq 50.00
Highlighted IDENTICAL residue GLY 45 index1 45 path 98 %Seq 50.00
Highlighted IDENTICAL residue GLY 46 index1 46 path 102 %Seq 50.00
Highlighted IDENTICAL residue GLU 47 index1 47 path 103 %Seq 50.00
Highlighted IDENTICAL residue ARG 48 index1 48 path 104 %Seq 50.00
Highlighted IDENTICAL residue LEU 49 index1 49 path 105 %Seq 50.00
Highlighted IDENTICAL residue LYS 50 index1 50 path 106 %Seq 50.00
Highlighted IDENTICAL residue SER 51 index1 51 path 107 %Seq 50.00
Highlighted IDENTICAL residue ARG 52 index1 52 path 108 %Seq 50.00
Highlighted IDENTICAL residue GLY 53 index1 53 path 109 %Seq 50.00
Highlighted IDENTICAL residue TYR 54 index1 54 path 110 %Seq 50.00
Highlighted IDENTICAL residue LYS 55 index1 55 path 111 %Seq 50.00
Highlighted IDENTICAL residue PHE 56 index1 56 path 112 %Seq 50.00
Highlighted IDENTICAL residue ASP 57 index1 57 path 113 %Seq 50.00
Highlighted IDENTICAL residue ILE 58 index1 58 path 114 %Seq 50.00
Highlighted IDENTICAL residue ALA 59 index1 59 path 115 %Seq 50.00
Highlighted IDENTICAL residue PHE 60 index1 60 path 116 %Seq 50.00
Highlighted IDENTICAL residue THR 61 index1 61 path 117 %Seq 50.00
Highlighted IDENTICAL residue SER 62 index1 62 path 118 %Seq 50.00
Highlighted IDENTICAL residue ALA 63 index1 63 path 119 %Seq 50.00
Highlighted IDENTICAL residue LEU 64 index1 64 path 120 %Seq 50.00
Highlighted IDENTICAL residue GLN 65 index1 65 path 121 %Seq 50.00
Highlighted IDENTICAL residue ARG 66 index1 66 path 122 %Seq 50.00
Highlighted IDENTICAL residue ALA 67 index1 67 path 123 %Seq 50.00
Highlighted IDENTICAL residue GLN 68 index1 68 path 124 %Seq 50.00
Highlighted IDENTICAL residue LYS 69 index1 69 path 125 %Seq 50.00
Highlighted IDENTICAL residue THR 70 index1 70 path 126 %Seq 50.00
Highlighted IDENTICAL residue CYS 71 index1 71 path 127 %Seq 50.00
Highlighted IDENTICAL residue GLN 72 index1 72 path 128 %Seq 50.00
Highlighted IDENTICAL residue ILE 73 index1 73 path 129 %Seq 50.00
Highlighted IDENTICAL residue ILE 74 index1 74 path 130 %Seq 50.00
Highlighted IDENTICAL residue LEU 75 index1 75 path 131 %Seq 50.00
Highlighted IDENTICAL residue GLU 76 index1 76 path 132 %Seq 50.00
Highlighted IDENTICAL residue GLU 77 index1 77 path 133 %Seq 50.00
Highlighted IDENTICAL residue VAL 78 index1 78 path 134 %Seq 50.00
Highlighted IDENTICAL residue GLY 79 index1 79 path 135 %Seq 50.00
Highlighted IDENTICAL residue GLU 80 index1 80 path 136 %Seq 50.00
Highlighted IDENTICAL residue PRO 81 index1 81 path 137 %Seq 50.00
Highlighted IDENTICAL residue ASN 82 index1 82 path 138 %Seq 50.00
Highlighted IDENTICAL residue GLU 84 index1 84 path 139 %Seq 50.00
Highlighted IDENTICAL residue THR 85 index1 85 path 140 %Seq 50.00
Highlighted IDENTICAL residue ILE 86 index1 86 path 141 %Seq 50.00
Highlighted IDENTICAL residue LYS 87 index1 87 path 142 %Seq 50.00
Highlighted IDENTICAL residue SER 88 index1 88 path 143 %Seq 50.00
Highlighted IDENTICAL residue GLU 89 index1 89 path 144 %Seq 50.00
Highlighted IDENTICAL residue LYS 90 index1 90 path 145 %Seq 50.00
Highlighted IDENTICAL residue LEU 91 index1 91 path 146 %Seq 50.00
Highlighted IDENTICAL residue ASN 92 index1 92 path 147 %Seq 50.00
Highlighted IDENTICAL residue GLU 93 index1 93 path 148 %Seq 50.00
Highlighted IDENTICAL residue ARG 94 index1 94 path 149 %Seq 50.00
Highlighted IDENTICAL residue ASP 98 index1 98 path 150 %Seq 50.00
Highlighted IDENTICAL residue LEU 99 index1 99 path 151 %Seq 50.00
Highlighted IDENTICAL residue GLN 100 index1 100 path 152 %Seq 50.00
Highlighted IDENTICAL residue GLY 101 index1 101 path 153 %Seq 50.00
Highlighted IDENTICAL residue LEU 102 index1 102 path 154 %Seq 50.00
Highlighted IDENTICAL residue ASN 103 index1 103 path 155 %Seq 50.00
Highlighted IDENTICAL residue LYS 104 index1 104 path 156 %Seq 50.00
Highlighted IDENTICAL residue ASP 105 index1 105 path 157 %Seq 50.00
Highlighted IDENTICAL residue ASP 106 index1 106 path 158 %Seq 50.00
Highlighted IDENTICAL residue ALA 107 index1 107 path 159 %Seq 50.00
Highlighted IDENTICAL residue ARG 108 index1 108 path 160 %Seq 50.00
Highlighted IDENTICAL residue LYS 109 index1 109 path 161 %Seq 50.00
Highlighted IDENTICAL residue LYS 110 index1 110 path 162 %Seq 50.00
Highlighted IDENTICAL residue TRP 111 index1 111 path 163 %Seq 50.00
Highlighted IDENTICAL residue GLY 112 index1 112 path 164 %Seq 50.00
Highlighted IDENTICAL residue ALA 113 index1 113 path 165 %Seq 50.00
Highlighted IDENTICAL residue GLU 114 index1 114 path 166 %Seq 50.00
Highlighted IDENTICAL residue GLN 115 index1 115 path 167 %Seq 50.00
Highlighted IDENTICAL residue VAL 116 index1 116 path 168 %Seq 50.00
Highlighted IDENTICAL residue GLN 117 index1 117 path 169 %Seq 50.00
Highlighted 78 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g06040-c1fzta_.pir.txt.1FZT.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g06040-c1fzta_.pir.txt PIR amino_acid 1FZT.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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