At2g13680.1/PDB N-terminus

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g13680-N-2ix0A.pir.txt
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Assigned types to 980 residues in Sequence 2-13680-N, 17 remain unknown
Assigned types to 233 residues in Sequence 2ixoA, 764 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g13680-N-2ix0A.pir.txt into sequence alignment.
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>2IXO.pdb Made from 5049 ATOM records in 2IXO.pdb
SLDRVDWPHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISH
CSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLPGYGNLACREWHHK
LDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDYGTGHELSFMA
TVAALDMLGMFPHHRGADVFLLFNKYYTIMRRLILTYTLEPAGLDDHFHL
VYILGSSQWQLLDAQAPLQPREILDKSLVREYKDTNFYCQGINFINEVKM
GPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVVQHFWFGTG
FFPWVNISLDRVDWPHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHK
YTTLISHCSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLPGPRRYG
NLACREWHHKLDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDY
GTGHELSFMATVAALDMLGMFPHHRGADVFLLFNKYYTIMRRLILTYTLE
PAGSGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKDTNFY
CQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKK
FPVVQHFWFGTGFFPWVNI
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Best alignment:
2IXO.pdb 1 SLDRVDWPHATF 12
 +LD +DW A F
2-13680-N 237 NLDLLDWLRAMF 248
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Highlighted IDENTICAL residue SER 2 index1 1 path 237 %Seq 50.00
Highlighted IDENTICAL residue LEU 3 index1 2 path 238 %Seq 50.00
Highlighted IDENTICAL residue ASP 4 index1 3 path 239 %Seq 50.00
Highlighted IDENTICAL residue ARG 5 index1 4 path 240 %Seq 50.00
Highlighted IDENTICAL residue VAL 6 index1 5 path 241 %Seq 50.00
Highlighted IDENTICAL residue ASP 7 index1 6 path 242 %Seq 50.00
Highlighted IDENTICAL residue TRP 8 index1 7 path 243 %Seq 50.00
Highlighted IDENTICAL residue PRO 9 index1 8 path 244 %Seq 50.00
Highlighted IDENTICAL residue HIS 10 index1 9 path 245 %Seq 50.00
Highlighted IDENTICAL residue ALA 11 index1 10 path 246 %Seq 50.00
Highlighted IDENTICAL residue THR 12 index1 11 path 247 %Seq 50.00
Highlighted IDENTICAL residue PHE 13 index1 12 path 248 %Seq 50.00
Highlighted 12 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g13680-N-2ix0A.pir.txt.2IXO.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g13680-N-2ix0A.pir.txt PIR amino_acid 2IXO.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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