At2g11090.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g11090-1wisA.pir.txt
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Assigned types to 151 residues in Sequence 2-11090, 13 remain unknown
Assigned types to 86 residues in Sequence 1wisA, 78 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 44 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 45 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 46 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 47 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 68 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 69 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 70 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 71 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 102 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 103 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 104 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 105 All residues are positively and negatively charged
Error in function WYRM_analyze_conservation_in_sequence_alignment()
Path index 106 All residues are positively and negatively charged
Translated sequence file At2g11090-1wisA.pir.txt into sequence alignment.
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>1WIS.pdb Made from 1830 ATOM records in 1WIS.pdb
GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISR
WLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVN
IVGTSPPSQPSRKIQTLQSGPSSG
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Best alignment:
1WIS.pdb 70 HQLSNEPDAR 79
 HQ + P R
2-11090 16 HQQTTRPRGR 25
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Highlighted IDENTICAL residue HIS 70 index1 70 path 16 %Seq 50.00
Highlighted IDENTICAL residue GLN 71 index1 71 path 17 %Seq 50.00
Highlighted IDENTICAL residue LEU 72 index1 72 path 18 %Seq 50.00
Highlighted IDENTICAL residue SER 73 index1 73 path 19 %Seq 50.00
Highlighted IDENTICAL residue ASN 74 index1 74 path 20 %Seq 50.00
Highlighted IDENTICAL residue GLU 75 index1 75 path 21 %Seq 50.00
Highlighted IDENTICAL residue PRO 76 index1 76 path 22 %Seq 50.00
Highlighted IDENTICAL residue ASP 77 index1 77 path 23 %Seq 50.00
Highlighted IDENTICAL residue ALA 78 index1 78 path 24 %Seq 50.00
Highlighted IDENTICAL residue ARG 79 index1 79 path 25 %Seq 50.00
Highlighted 10 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g11090-1wisA.pir.txt.1WIS.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g11090-1wisA.pir.txt PIR amino_acid 1WIS.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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