At2g02060.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
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Sequence 1
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Sequence 2
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g02060-1zdfA.pir.txt
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Assigned types to 626 residues in Sequence 2-02060, 28 remain unknown
Assigned types to 260 residues in Sequence 1zdfA, 394 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g02060-1zdfA.pir.txt into sequence alignment.
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>1ZDF.pdb Made from 2049 ATOM records in 1ZDF.pdb
MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKA
LEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVF
MDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLL
HVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA
FKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSMTHPQFLNVWWDIFTTS
VVPLLQQF
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Best alignment:
1ZDF.pdb 153 ASEQGSFDGGSQGLLNTFFNSWATTDIRKHLP 184
 SE G +D + L N TT + H P
2-02060 152 TSESGGYDDDADFLHIKKMND-TTTFLSHHFP 182
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Highlighted IDENTICAL residue ALA 152 index1 153 path 152 %Seq 50.00
Highlighted IDENTICAL residue SER 153 index1 154 path 153 %Seq 50.00
Highlighted IDENTICAL residue GLU 154 index1 155 path 154 %Seq 50.00
Highlighted IDENTICAL residue GLN 155 index1 156 path 155 %Seq 50.00
Highlighted IDENTICAL residue GLY 156 index1 157 path 156 %Seq 50.00
Highlighted IDENTICAL residue SER 157 index1 158 path 157 %Seq 50.00
Highlighted IDENTICAL residue PHE 158 index1 159 path 158 %Seq 50.00
Highlighted IDENTICAL residue ASP 159 index1 160 path 159 %Seq 50.00
Highlighted IDENTICAL residue GLY 160 index1 161 path 160 %Seq 50.00
Highlighted IDENTICAL residue GLY 161 index1 162 path 161 %Seq 50.00
Highlighted IDENTICAL residue SER 162 index1 163 path 162 %Seq 50.00
Highlighted IDENTICAL residue GLN 163 index1 164 path 163 %Seq 50.00
Highlighted IDENTICAL residue GLY 164 index1 165 path 164 %Seq 50.00
Highlighted IDENTICAL residue LEU 165 index1 166 path 165 %Seq 50.00
Highlighted IDENTICAL residue LEU 166 index1 167 path 166 %Seq 50.00
Highlighted IDENTICAL residue ASN 167 index1 168 path 167 %Seq 50.00
Highlighted IDENTICAL residue THR 168 index1 169 path 168 %Seq 50.00
Highlighted IDENTICAL residue PHE 169 index1 170 path 169 %Seq 50.00
Highlighted IDENTICAL residue PHE 170 index1 171 path 170 %Seq 50.00
Highlighted IDENTICAL residue ASN 171 index1 172 path 171 %Seq 50.00
Highlighted IDENTICAL residue SER 172 index1 173 path 172 %Seq 50.00
Highlighted IDENTICAL residue ALA 174 index1 175 path 173 %Seq 50.00
Highlighted IDENTICAL residue THR 175 index1 176 path 174 %Seq 50.00
Highlighted IDENTICAL residue THR 176 index1 177 path 175 %Seq 50.00
Highlighted IDENTICAL residue ASP 177 index1 178 path 176 %Seq 50.00
Highlighted IDENTICAL residue ILE 178 index1 179 path 177 %Seq 50.00
Highlighted IDENTICAL residue ARG 179 index1 180 path 178 %Seq 50.00
Highlighted IDENTICAL residue LYS 180 index1 181 path 179 %Seq 50.00
Highlighted IDENTICAL residue HIS 181 index1 182 path 180 %Seq 50.00
Highlighted IDENTICAL residue LEU 182 index1 183 path 181 %Seq 50.00
Highlighted IDENTICAL residue PRO 183 index1 184 path 182 %Seq 50.00
Highlighted 31 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g02060-1zdfA.pir.txt.1ZDF.pdb.conservation.pml
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The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g02060-1zdfA.pir.txt PIR amino_acid 1ZDF.pdb A 100.0 BLOSUM62.dat 
completed successfully.
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