At2g07090.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
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Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
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Got here 3
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Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g07090-1ic2_A.pir.txt
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Assigned types to 159 residues in Sequence 2-07090, 0 remain unknown
Assigned types to 63 residues in Sequence 1ic2_A, 96 remain unknown
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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
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Translated sequence file At2g07090-1ic2_A.pir.txt into sequence alignment.
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>1IC2.pdb Made from 2492 ATOM records in 1IC2.pdb
MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL
KGTEDELDKYSESLKDAQEKLELADKKATMDAIKKKMQMLKLDKENALDR
AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL
ELADKKMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV
ALQKKLKGTEDELDKYSESLKDAQEKLELADKKATMDAIKKKMQMLKLDK
ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK
DAQEKLELADKK
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Best alignment:
1IC2.pdb 20 DRAEQAEADKKAAEERSKQLEDELVALQKKL 50
 + + +A+ + ++L++E +A +K+L
2-07090 91 NEISKVKAETNEMLNQIQELKEEAIARKKEL 121
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Highlighted IDENTICAL residue LEU 39 index1 39 path 110 %Seq 100.00
Highlighted IDENTICAL residue LYS 49 index1 49 path 120 %Seq 100.00
Highlighted IDENTICAL residue LEU 50 index1 50 path 121 %Seq 100.00
Highlighted 3 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g07090-1ic2_A.pir.txt.1IC2.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g07090-1ic2_A.pir.txt PIR amino_acid 1IC2.pdb _ 100.0 BLOSUM62.dat 
completed successfully.
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