Protein sequence:
MFIKKKKKKVSSFEFSSLRSTFSFVHWAKLKHQTSSIIENHSDQISPIQIDFYNRPFEKGRLKALVSWSISYFGEKKTVDLVENLKSIGYAYATKAGISLGIDDLKIPPSKKDYITKAEQILEFTNQDVKKGYLTSIEYFSKVIETWNKTSESLKEEVISNFKKTDELNPVFIMAFSGARGNISQVRQLTSMRGLMSDPQGRIINFPIQSNFREGLTLTEYLISCYGARKGVVDTALRTATSGYLTRRLVDVAHHVIVRGFNCGTKKGLYLSDLKKGDKILLSLKNRIIGRRLAEDIYNSKKQLIATKNQEISSNLSSLITKNKTSIFVRSPLTCQDKNYVCQLCYGWSLANHRLVPSGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFSGEVTDEIKAPFRGIVFFNTSIPGKLIRTTYGQIAFLTKQESFLTLIPENPKQQWLDSSKKLGFSKQKEPDFQKDSLFLQKKVEFKIPAYTLLFVKNNQLVEKNQVLGEASTFLTRQNQSIESYQTIYSEFSGEVKFQHSKGVQVLKKELDFKIDDQELSSVLKNKLRKLKSLFNPSANSSTGEFWILSAQKQTISKPVNLLVKPGDFLHQKALLYLAKKASYSNYFETIALDPSHNLPTLPLPILFYDFGVNSLAKNLNKNAFFNLALLNEQLYLRKGNLFLMQDRSTQKKANRSTIKILPSLQKQTLQNFKKVCSDLPFVSRSLFPISESSRDKLNSIQNGVKLQSTIVGKHRFLSLNIIFTQIAKKKFFKMNLNSEVKIKSLKQFDLNHESNEMKQIGVFNKDKTPTGGFGIQEIFYTSFESKLKTSPLFLLAQFSSDKTLIDLTKQNVQDFKFKNLNYQYFHPFLVLASDPPFCVSEKTLHFMQSCGQSLNEIDPNPKIETFFSKSAPSFLDKNRRNKRFKSLKKTMEKNHLLSLYYFLTQPLSDDNDDTIMNSFNRKSKLNKFSTKRLNKKQIVFGKLNHHFFADKGGDDFHFKNFIHGGLSFKEVCEVDLYLKERVEVFNWKIATLGTPVSDIITKAEKFVLFHSPTNACGSFILEQPLKNPCFYAFGKIGFLRGKTDYGQPNKIFSSNLFNLKKGWKTKTEGRFTNRPNKQKFKSFINSVEKSGPLNKKIFQNEGPFALNDFTKIQPIVGNQLNENFFTNAAELLKKRPGAAKQEFQLTSFLEKFINRHNRLFWFPKDQNILNFADQQSKGPTNLLFQRKFLKDLTLFSDGDPSFSCRSFVFQTKFYLSKKLFENLPRHNFENYDIISGPINFQEFEILQKIPFSFYPLSSRSTQKFGPFFILPREVTKKQSFQIFKYPLLFELKTYSPTFFSTVFFFIRNFGPKFHKKRERKLIKAIFRPLPRLIGFSTLKSPLDSGQTTTEKAGLQKPVYRFIKKSELFFSIFDYQILKNYRRLASNLILKQNGLNLLNYSPILNSLLKSALLFNIASAKKNSVFEKLGLKISAAYSESKTFGIATEKNSLNSNSVVLFQKKQSGFLIRELNPFHNTLGSPFFDRSKKVDNPQSSLTFDRPQSANERKQILKKARQKLRLFPLNLNEKKNRFSSVTLDLLRDQTTLHKMQSCGEAESGNLKTKETLFKKVKRENKKITEIFTFCPFCPQLKSKGKRKSKGDQLFQEPCNLNLGENFLSCLPFGFEYPVKARRRLVKEQRLPFSLSLILPDKLNYYQSLTSFPFSKQMGNRLLKNLTQLNFLNVGCIRLSQLDSKILRSDSFNPQRKELKSKKFNNFSINELSDSFMNLGWTGFSQKNLILKYLDTDQIFKKGGPLKSNLQDSQLVECFFKTKKVHFLFISKLLKESSLNSFFYNFYYSGSSFNSFADIQKFENKASFFQTKKKLYNFEKKDQWQKKMSFLFFIQNKKTHLFLPNSKGFFLKKKKDISCERFSTNVILSKSQSKNETKELKKASLANQNLKKHSTISTENALKNKMNQSFSFSHFNKEKKPLSDCRAQTKGAIQKFSTKLPPTQTGWIFAILNPKIYLNKHNCVEFAGNSNLSDISFDNYVTLTCFLTIRFVNTFFELHANVDFWLKTLNTFHLGLLKQSSFDFKASKIKLQKTPFLFPSFPPNYIELVFVKKAILRRVAKKDSTFCNLYSFENFLLDKRFQKFKTHFNLQSHLKLAPSFCVDLQGSKGLENFAWTGKLRSQSQASWILETNLFSPCFADKQSKSPLLEFENKKCPAFAKGKLQKSKIEKFEFTYNDIKNKLVYFNKSFFLTSDQRPVFQRSFPKKIHRKTLFITHPSIIWKSRFESSLKSLTFFKMKAKQNGTGSLSFFEKKSLETSLNKTSVLFKKVLAIKTFLLFSFSSLNLVSGKLNFLSSVDQNKKSNLKIQSIFENFAYQQSKGSNEINFSRSAALHSMQSFVFSEKLRKTLSLRISNFHKIQKYANQNLESGIGFFSFFQKSLSIVFFDSAYHFSPQNTSTKDSFEIKKENKTVINNYCRFSNFKLLKLPVFKNRFLNKYSLFKSFLNYLSYSFDVKTSKQILVRLPLLKETCFHFNKNSRFKPKLLILNQANSQQLLATCFVQPYSEFSNSSFVFNSKSAHLHSQTAVKHRQNFEKKSKIIFDERKTFSFISSSTQVLFVSKKATHYLNENFRSQNYKKKTYDFIDNANVLKNRFFERLSPVEFHRKREGFLSKDQKQMTFKYQNMQGGLIPALDSTSTFAPFARSSKARGSAKAIFSQAQRLWGEESFINDKQKSIRNQIIFAKNSRFKNLLILNNKNENEKLFYLNLKKKVSEQSTMNFFVPALYKKLFYTKQSISKFLEVKIQPNLQIQWTFFNSNISKHEKQQKFLLPLFDETFNIQGSNLKNGLNFGMLSLSYSTLDPFFECLKKRVNSSWFFNGKQTFKKKKKIAKEGAFFNHSFFLDAKKSKQLNKKIQKKFTKRLQTLNFSEIKKGFFISEKFKTRLSCLIKKPFLISTFFLSYRLKKPKLALNFNYQSLGNNSKKFSLIRLNSIDFNLSKSQRGWFHNQNVSKQFRFFKHNRSVNLFQIHFDFENSCDPCFAMQKQTTSSKPVLFLYNLKPLKTDFFQKGFQTTSQLLFKHINHSIVPLKDDANHLSSFLNQANFRGAFEPKAKTIADKLISQNVAITKPNLPKSNFSSLKGEVFFVTNSRQFKLVDLSVFKKSSREIQLLTNLDLITFRIKNRNFPSKHIEEQKPNLIEKQLAQSKNKLQIYIGQLLRYGKEISPGIGLNQSGQILILQSNKLVLRYAKPFLLASGGICDLVQGDFVKNQSPLLNLKYKSLKTEDIVQGIPKIEQLFEARENFQDELGINNLLKNKFLVYKTLYHPKEAVRKSFEFIQHYIIDGIQYVYQSQGVNISDKHIEIIVKQMTSKVRILEPRNSGLLRGDVVDLDWIERINLDILTGKKAQYEPIVLGITKASLDRRGFISAASFQETIKVLTKATILQRRDYLRGLKENVILGHLINSGTGSTLYSILKEKKSNFLNRFLQ

Annotated regions:
phrase: GLTLTEYLISCYGARKGVVDTALRTATSGYLTRRLVDVAHHVIVRGFNCGTKKGLYLSDLKKGDKILLSLKNRIIGRRLAEDIYNSKKQLIATKNQEISSNLSSLITKNKTSIFVRSPLTCQDKNYVCQLCYGWSLANHRLVPSGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFSGEVTDEIKAPFRGIVFFNTSIPGKLIRTTYGQIAFLTKQESFLTLIPENPKQQWLDSSKKLGFSKQKEPDFQKDSLFLQKKVEFKIPAYTLLFVKNNQLVEKNQ
type: DOMAIN
name: RNA_pol_Rpb1_5
description: RNA polymerase Rpb1, domain 5

phrase: TSIEYFSKVIETWNKTSESLKEEVISNFKKTDELNPVFIMAFSGARGNISQVRQLTSMRGLMSDPQGRII
type: DOMAIN
name: RNA_pol_Rpb1_4
description: RNA polymerase Rpb1, domain 4