nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MCQKYDTLSGDRDVEHDEHFVLEDYDSESEDQNISSKSLGHSSELSMSTLALLERFKKQYSAPTEEEETVGDDEPKIFYCSRTHSQLAQFASELRRVEMPPSLPKELSEKLTDSEALEERVKHLSLGSRKNLCINPRVMKLENATAINERCMDLQQPGMAVEHRCPYLPSKDDEPQVLQFRDHTLATVKDIEDMGKLGKHIGVCPYYASRSVIKHSEIVTLPYPLLLQRSAREALGLSIKNHIVIIDEAHNLMDAISNIHSVTITLSQLQTAIFQLTTYARKFKTRLKGKNRTYIAQVIRLVSSVADHLRSIQGSNQPPDGAVKTSDLMAGKGVDQINPYKLSHYLQESKLARKVDGYVEYSKDTANRQSHGKPSTPVLFHVQSFLLPLMNPSAEGRLFYMKDQNDIQLKYLLLDPTNHFREIVEDARAVILAGGTMSPMSDYMNHLFPYVPASRLDTFSYGHVIPPENLVAHTLAQGVMGCAFDFTYESRDSEKMIIDLGRTVATLCQAIPDGVVAFFPSYDYLSRILHIWKKPLGADKNQTILGLIERKKPILYESRDMTTKSDDILQEYTRTIDSGSGALLLSVIGGKLSEGINFSDRLGRGVLIIGLPFPNIRSAVWQAKLQYVEQKAYSGSSGSETDRQMIAKAAGRDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRRYDKPNIQGKLPAWIKQSMVRSPTQRPAGATVQNLIKFFAARGSLD

Annotated regions:
phrase: MCQKYDTLSGDRDVEHDEHFVLEDYDSESEDQNISSKSLGHSSELSMSTLALLERFKKQYSAPTEEEETVGDDEPKIFYCSRTHSQLAQFASELRRVEMPPSLPKELSEKLTDSEALEERVKHLSLGSRKNLCINPRVMKLENATAINERCMDLQQPGMAVEHRCPYLPSKDDEPQVLQFRDHTLATVKDIEDMGKLGKHIGVCPYYASRSVIKHSEIVTLPYPLLLQRSAREALGLSIKNHIVIIDEAHNLMDAISNIHSVTITLSQLQTAIFQLTTYARKFKTRLKGKNRTYIAQV
type: DOMAIN
name: Helic_SF1/SF2_ATP-bd_DinG/Rad3
description: Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type

phrase: HIVIIDEAH
type: CONSERVED_SITE
name: DNA/RNA_helicase_DEAH_CS
description: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

phrase: TLCQAIPDGVVAFFPSYDYLSRILHIWKKPLGADKNQTILGLIERKKPILYESRDMTTKSDDILQEYTRTIDSGSGALLLSVIGGKLSEGINFSDRLGRGVLIIGLPFPNIRSAVWQAKLQYVEQKAYSGSSGSETDRQMIAKAAGRDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRRYDKPNIQGKLPAWIK
type: DOMAIN
name: ATP-dep_Helicase_C
description: ATP-dependent helicase, C-terminal

phrase: YDYLSRILHIWKKPLGADKNQTILGLIERKKPILYESRDMTTKSDDILQEYTRTIDSGSGALLLSVIGGKLSEGINFSDRLGRGVLIIGLPFPNIRSAVWQAKLQYVEQKAYSGSSGSETDRQMIAKAAGRDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRRYD
type: DOMAIN
name: ATP-dep_Helicase_C
description: ATP-dependent helicase, C-terminal

phrase: HDEHFVLEDYDSESEDQNISSKSLGHSSELSMSTLALLERFKKQYSAPTEEEETVGDDEPKIFYCSRTHSQLAQFASELRRVEMPPSLPKELSEKLTDSEALEERVKHLSLGSRKNLCINPRVMKLENATAINERCMDLQQPGMAVEHRCPYLPSKDDEPQVLQFRDHTLATVKDIEDMGKLGKHIGVCPYYASRSVIKHSEIVTLPYPLLLQRSAREALGLSIKNHIVIIDEAHNLMDAISNIHSVTITLSQLQTAIFQLTTYARKFKTRLKGK
type: DOMAIN
name: Helicase-like_DEXD_c2
description: Helicase-like, DEXD box c2 type

phrase: YCSRTHSQLAQFASELRRVEMPPSLPKELSEKLTDSEALEERVKHLSLGSRKNLCINPRVMKLENATAINERCMDLQQPGMAVEHRCPYLPSKDDEPQVLQFRDHTLATVKDIEDMGKLGKHIGVCPYYASRSVIKHSEIVTLPYPLLLQRSAREALGLSIKNHIVIIDEAHNLMDAISNIHSVTITLSQ
type: DOMAIN
name: RAD3-like_helicase_DEAD
description: RAD3-like helicase, DEAD
Protein sequence:
MAHPAQLGLQNATSPIMEELIAFHDHALMIIFLISSLVLYVISLMLTTKLTHTSTMNAQEIEMIWTILPAIILIMIALPSLRILYMTDEFNKPYLTLKAIGHQWYWSYEYSDYEDLAFDSYITPTYFLEPGEFRLLEVDNRTTLPMEADIRMLISSQDVLHSWAVPSLGVKADAIPGRLNQVMLASMRPGLFYGQCSEICGSNHSFMPIVLEFIYFQDFEVWASYLYIVSL

Annotated regions:
phrase: KPYLTLKAIGHQWYWSYEYSDYEDLAFDSYITPTYFLEPGEFRLLEVDNRTTLPMEADIRMLISSQDVLHSWAVPSLGVKADAIPGRLNQVMLASMRPGLFYGQCSEICGSNHSFMPIVLEFIYFQDFEVWAS
type: DOMAIN
name: CcO_II-like_C
description: Cytochrome c oxidase subunit II-like C-terminal

phrase: PYLTLKAIGHQWYWSYEYSDYEDLAFDSYITPTYFLEPGEFRLLEVDNRTTLPMEADIRMLISSQDVLHSWAVPSLGVKADAIPGRLNQVMLASMRPGLFYGQCSEICGSNHSFMPIVLEFIYFQDFEV
type: DOMAIN
name: CcO_II_C
description: Cytochrome c oxidase subunit 2, C-terminal

phrase: IMEELIAFHDHALMIIFLISSLVLYVISLMLTTKLTHTSTMNAQEIEMIWTILPAIILIMIALPSLRILYMTDEFNKPYLTLKAIGHQWYWSYEYSDYEDLAFDSYITPTYFLEPGEFRLLEVDNRTTLPMEADIRMLISSQDVLHSWAVPSLGVKADAIPGRLNQVMLASMRPGLFYGQCSEICGSNHSFMPIVLEFIYFQDFEVW
type: DOMAIN
name: Cyt_c_oxidase_su2
description: Cytochrome c oxidase, subunit II

phrase: MAHPAQLGLQNATSPIMEELIAFHDHALMIIFLISSLVLYVISLMLTTKLTHTSTMNAQEIEMIWTILPAIILIMIALPSLRILYMTDEF
type: DOMAIN
name: Cyt_c_oxidase_su2_TM_dom
description: Cytochrome C oxidase subunit II, transmembrane domain

phrase: HPAQLGLQNATSPIMEELIAFHDHALMIIFLISSLVLYVISLMLTTKLTHTSTMNAQEIEMIWTILPAIILIMIALPSLR
type: DOMAIN
name: Cyt_c_oxidase_su2_TM_dom
description: Cytochrome C oxidase subunit II, transmembrane domain

phrase: VLHSWAVPSLGVKADAIPGRLNQVMLASMRPGLFYGQCSEICGSNHSF
type: BINDING_SITE
name: Copper_CuA
description: Copper centre Cu(A)

phrase: LTLKAIGHQWYWSYEYSDYEDLAFDSYITPTYFLEPGEFRLLEVDNRTTLPMEADIRMLISSQDVLHSWAVPSLGVKADAIPGRLNQVMLASMRPGLFYGQCSEICGSNHSFMPIVL
type: DOMAIN
name: CcO_II-like_C
description: Cytochrome c oxidase subunit II-like C-terminal
Protein sequence:
MARIAGVDIPRDKRIEVALTYIYGIGSTRAKTILTKAGVNPDIRVKDLEDNDVQKLRNATESFTIEGDLRRQEGMALKRLQDIGCLRGRRHRMSLPVRGQRTRTNARTRRGARKTVAGKKK

Annotated regions:
phrase: RGRRHRMSLPVRG
type: CONSERVED_SITE
name: Ribosomal_uS13_CS
description: Small ribosomal subunit protein uS13, conserved site
Protein sequence:
MALTTQAPGQTQELGGKHIVLGLSGGIACYKAAELCRTLIKAGASVQVVMTEAAEQFITAVTLQALSGRPVYTSQWDSREANNMAHINLSREADAIVIAPCSADFMAKLLHGRADDLLSLMCLARPIQEVPLLLAPAMNREMFAHPATQRNLAQLRADGATVLDVGSGFQACGETGDGRMLEPEQLLEDIIAFFTPKWLLGQRVLITAGPTYEAIDPVRGITNLSSGKMGFAIARAAHEAGAEVTLVAGPVSLPTPRGVSRIDVRSAQDMLESVMDRAQEATLFIAAAAVADWRVAAPAQEKIKKDGSGQAPQLSFTENQDILATVAQLPTATNGQLYCVGFAAESHDLLVNAQAKRLRKKVPLLVGNIGPDTFGRDDNALLLNDGQGATQLPRASKRALARQLVQEIAQRLGSASVLLAKLA

Annotated regions:
phrase: KHIVLGLSGGIACYKAAELCRTLIKAGASVQVVMTEAAEQFITAVTLQALSGRPVYTSQWDSREANNMAHINLSREADAIVIAPCSADFMAKLLHGRADDLLSLMCLARPIQEVPLLLAPAMNREMFAHPATQRNLAQLRADGATVLDVGSGFQACGETGDGRMLEPEQLLEDI
type: DOMAIN
name: Flavoprotein
description: Flavoprotein

phrase: GQRVLITAGPTYEAIDPVRGITNLSSGKMGFAIARAAHEAGAEVTLVAGPVSLPTPRGVSRIDVRSAQDMLESVMDRAQEATLFIAAAAVADWRVAAPAQEKIKKDGSGQAPQLSFTENQDILATVAQLPTATNGQLYCVGFAAESHDLLVNAQAKRLRKKVPLLVGNIGPDTFGRDDNALL
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal
Protein sequence:
MRSRAIDRIVLASGNAGKLRELSHLLEPIGVAVSSQADFDVSPPEETGLTFVENALIKAREASRASGLPALADDSGLVVEALDGRPGIHSARFAGDQASDADNNALLLKKLNGLPMERRAAAFHCCLVLLQHDRDPAPIITHGIWQGHILETPRGKDGFGYDPLFYDTELGAAAAELPMGEKSRVSHRGKALKDLINRLKAGSRF

Annotated regions:
Protein sequence:
MRNHRTSIFVVLSLVIILNGQSGFLPRAGAESKVHIVYLGEKQHDDPEFVTESHHRMLWSLLGSKEEAHGSMVHSFRHGFSGFAAKLTESQAKKIADLPEVVHVIPDRFYKPATTRTWDYLGLSPTNPKNLLNQTNMGEQMIIGIIDSGVWPESEVFNDNEIGPVPSHWKGGCESGEDFNSSHCNKKLIGAKYFINAFLATHESFNSSESLDFISPRGYNGHGTHVATIAGGSYVPNTSYKGLAGGTVRGGAPRARIAVYKTCWYLDLDIAACSSADILKAMDEAIHDGVDVLSLSLGFEPLYPETDVRDGIATGAFHAVLKGITVVCAAGNAGPAAQTVGNTAPWILTVAATTLDRSFVTPMTLGNNKVILGQAIYTGTEVGFTSLVYPENPGNSNESFSGTCERLLINSNRTMAGKVVLCFTESPYSISVTRAAHYVKRAGGLGVIIAGQPGNVLRPCLDDFPCVAVDYELGTYILFYIRSNGSPVVKIQPSRTLIGQPVGTKVASFSSRGPNPISAAILKPDIAAPGVSILAATTTNTTFNDRGFIFLSGTSMATPTISGIVALLKALHPDWSPAAIRSAIVTTAWRTDPFGEQIFAEGSPRKPADPFDYGGGLVNPEKATKPGLVYDLGLEDYVLYMCSVGYNETSISQLVGKGTVCSYPKPSVLDFNLPSITIPNLKEEVTLPRTLTNVGPLESVYRVAVEPPLGTQVTVTPETLVFNSTTKRVSFKVSVSTTHKINTGYYFGSLTWSDSLHNVTIPLSVRTQLLPYYYDEN

Annotated regions:
phrase: GTSMATPTIS
type: ACTIVE_SITE
name: Peptidase_S8_Ser-AS
description: Peptidase S8, subtilisin, Ser-active site

phrase: YKPATTRTWDYLGLSPTNPKNLLNQTNMGEQMIIGIIDSGVWPESEVFNDNEIGPVPSHWKGGCESGEDFNSSHCNKKLIGAKYFINAFLATHESFNSSESLDFISPRGYNGHGTHVATIAGGSYVPNTSYKGLAGGTVRGGAPRARIAVYKTCWYLDLDIAACSSADILKAMDEAIHDGVDVLSLSLGFEPLYPETDVRDGIATGAFHAVLKGITVVCAAGNAGPAAQTVGNTAPWILTVAATTLDRSFVTPMTLGNNKVILGQAIYTGTEVGFTSLVYPENPGNSNESFSGTCERLLINSNRTMAGKVVLCFTESPYSISVTRAAHYVKRAGGLGVIIAGQPGNVLRPCLDDFPCVAVDYELGTYILFYIRSNGSPVVKIQPSRTLIGQPVGTKVASFSSRGPNPISAAILKPDIAAPGVSILAATTTNTTFNDRGFIFLSGTSMATPTISGIVALLKALHPDWSPAAIRSAIVTTA
type: DOMAIN
name: Peptidases_S8_3
description: Cucumisin-like catalytic domain

phrase: GEQMIIGIIDSGVWPESEVFNDNEIGPVPSHWKGGCESGEDFNSSHCNKKLIGAKYFINAFLATHESFNSSESLDFISPRGYNGHGTHVATIAGGSYVPNTSYKGLAGGTVRGGAPRARIAVYKTCWYLDLDIAACSSADILKAMDEAIHDGVDVLSLSLGFEPLYPETDVRDGIATGAFHAVLKGITVVCAAGNAGPAAQTVGNTAPWILTVAATTLDRSFVTPMTLGNNKVILGQAIYTGTEVGFTSLVYPENPGNSNESFSGTCERLLINSNRTMAGKVVLCFTESPYSISVTRAAHYVKRAGGLGVIIAGQPGNVLRPCLDDFPCVAVDYELGTYILFYIRSNGSPVVKIQPSRTLIGQPVGTKVASFSSRGPNPISAAILKPDIAAPGVSILAATTTNTTFNDRGFIFLSGTSMATPTISGIVALLKALHPDWSPAAIRSAIVTTAWR
type: DOMAIN
name: Peptidase_S8/S53_dom
description: Peptidase S8/S53 domain

phrase: DFNLPSITIPNLKEEVTLPRTLTNVGPLESVYRVAVEPPLGTQVTVTPETLVFNSTTKRVSFKVSVSTTHKINTGYYFGSLTWSDSLHNVTIPLS
type: DOMAIN
name: Subtilisin-like_FN3
description: Subtilisin-like protease, fibronectin type-III domain

phrase: VHIVYLGEKQHDDPEFVTESHHRMLWSLLGSKEEAHGSMVHSFRHGFSGFAAKLTESQAKKIADLPEVVHVIPDRFY
type: DOMAIN
name: S8pro/Inhibitor_I9
description: Peptidase S8 propeptide/proteinase inhibitor I9
Protein sequence:
MALWLPGGQLTLLLLLWVQQTPAGSTEAPLKVDVDLTPDSFDDQYQGCSEQMVEELNQGDYFIKEVDTHKYYSRAWQKAHLTWLNQAKALPESMTPVHAVAIVVFTLNLNVSSDLAKAMARAAGSPGQYSQSFHFKYLHYYLTSAIQLLRKDSSTKNGSLCYKVYHGMKDVSIGANVGSTIRFGQFLSASLLKEETRVSGNQTLFTIFTCLGASVQDFSLRKEVLIPPYELFEVVSKSGSPKGDLINLRSAGNMSTYNCQLLKACSKKCAPAPVVIGCLFLVTVVISSKSRAQRNLLAPF

Annotated regions:
Protein sequence:
MNGTEGPYFYVPMVNTSGIVRSPYEYPQYYLVNPAAYARLGAYMFLLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEIALWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWLMALACAAPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNESFVIYMFVCHFTVPLMVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVIMMVVAFLVCWLPYASVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNPMIYICLNKQFRHCMITTLCCGKNPFEEEEGASTASKTEASSVSSSSVSPA

Annotated regions:
phrase: INFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEIALWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWLMALACAAPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNESFVIYMFVCHFTVPLMVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVIMMVVAFLVCWLPYASVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNPMI
type: DOMAIN
name: GPCR_Rhodpsn_7TM
description: GPCR, rhodopsin-like, 7TM

phrase: NGTEGPYFYVPMVNTSGIVRSPYEYPQYYLVNPAA
type: DOMAIN
name: Rhodopsin_N
description: Rhodopsin, N-terminal

phrase: IPAFFAKSSSIYNPMI
type: BINDING_SITE
name: Retinal_BS
description: Visual pigments (opsins) retinal binding site
Protein sequence:
MRHRLSGRQLGRNSSHRKAMFRNMSASLVEHELIKTTLPKAKELRRVIEPLITLAKVDSVANRRLANARLQSKSAVGKLFSELGKRYATRPGGYVRILKCGFRAGDKAPMAYVELVDRPARAVETAVEVDAE

Annotated regions:
phrase: IKTTLPKAKELRRVIEPLITLA
type: CONSERVED_SITE
name: Ribosomal_bL17_CS
description: Large ribosomal subunit protein bL17, conserved site
Protein sequence:
MAPVLALVGATGAVGTVMIDIINGRETVPWGEIRLIASARSAGKKITVRGEELTVVALSPEAFDGVDIAMFDVPDEISAEWAPIAASRGAVAVDNSGAFRMDDEVPLVVPEVNADKVTSRPKGIIANPNCTTLSMMAALGALHREFELKELVVASYQAVSGAGKEGVDRLYAELEAVAGKGLGVRAGDVREALEAAGLPIADSPFPAALAFNVVPSAGSYKGDGWYSEELKVRNESRKILGIPDLKVSATCVRVPVVTTHSLAVHATFAREVTVEAAHKVFEAQPTVVLVDDPENGVFPTPADVVGGDPTYVGRVRQALDFPNTLDFFVCGDNLRKGAALNTYEIAEQLAPEFS

Annotated regions:
phrase: ALVGATGAVGTVMIDIINGRETVPWGEIRLIASARSAGKKITVRGEELTVVALSPEAFDGVDIAMFDVPDEISAEWAPIAASRGAVAVDNSGAFRMDDEVPLVVPEVNADKV
type: DOMAIN
name: Semialdehyde_DH_NAD-bd
description: Semialdehyde dehydrogenase, NAD-binding

phrase: VLALVGATGAVGTVMIDIINGRETVPWGEIRLIASARSAGKKITVRGEELTVVALSPEAFDGVDIAMFDVPDEISAEWAPIAASRGAVAVDNSGAFRMDDEVPLVVPEVNADKVTS
type: DOMAIN
name: Semialdehyde_DH_NAD-bd
description: Semialdehyde dehydrogenase, NAD-binding

phrase: LGALHREFELKELVVASYQAVSGAGKEGVDRLYAELEAVAGKGLGVRAGDVREALEAAGLPIADSPFPAALAFNVVPSAGSYKGDGWYSEELKVRNESRKILGIPDLKVSATCVRVPVVTTHSLAVHATFAREVTVEAAHKVFEAQPTVVLVDDPENGVFPTPADVVGGDPTYVGRVRQALDFPNTLDFFVCGDNLR
type: DOMAIN
name: Semialdhyde_DH_dimer_dom
description: Semialdehyde dehydrogenase, dimerisation domain
Protein sequence:
MASLTPMMQQYLEIKEQYKDCILFFRLGDFYEMFFSDAEVASRELEITLTGKDCGLEERAPMCGVPFHSADSYIAKLISKGYKVAICEQIEDPALAKGLVKRDVIRIVTPGTVTDSAMLDEKKNNYLMSIYKNKNYYGIACVDLTTGEFLSTHITFGNTFNKLMDEIAKFSPSEIVVNGEFFHDENIKKTLKQRFDVYISGLEDKFFEKEFSIQKVRNYFKDYVIEENAFDLYINASGALLEYLEQTQKVNLSHIQNFNVYRIEEYMILDMATRRNLELTETMREKNRKGSLLWVLDRTMTSMGGRTLRKWIEQPLINLHDIKDRLDAVNEFKERFMIRSEVRELLRAVYDIERLMTKVILGSANCRDLISIKHSIGQVPYIKELLRDLKADLNVLSYNELDTLTDVYEIIDKAIVDDPPVAVKEGGIIKEGFNEEVDRLRSASKDGKKWIAHLESKERERTGIKNLKVGFNKVFGYYIEVTKSYYSQVPDDYIRKQTLANCERYITPELKEIENTVLGAEDRLVELEYQIFVDVRNKVAKEINRLKTTARSLARIDVLCSLAEVADRESYTMPEVTDDDKIEIKDGRHPVVEKIIGQEAFVPNDTYLDMDENQIAIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAKSAKIGIVDRIFTRVGASDDLAAGQSTFMVEMSEVANILGNATSKSLLVLDEIGRGTSTYDGLSIAWAVIEYIGEKIGARTLFATHYHELTELEERIEGIKNYCISVEEKGEDIIFLRKILRGGADNSYGVQVARLAGIPDPVIHRAKEILKKLEDADITRKEKRITRRKQPIEGQIDVFTFNAAQRSYDEVLNELKSLDITTLTPLDAINVLYNLQKKVKG

Annotated regions:
phrase: SLLVLDEIGRGTSTYD
type: DOMAIN
name: DNA_mismatch_repair_MutS_C
description: DNA mismatch repair protein MutS, C-terminal

phrase: NQIAIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAKSAKIGIVDRIFTRVGASDDLAAGQSTFMVEMSEVANILGNATSKSLLVLDEIGRGTSTYDGLSIAWAVIEYIGEKIGARTLFATHYHELTELEERIEGIKNYCISVEEKGEDIIFLRKILRGGADNSYGVQVARLAGIPDPVIHRAKEIL
type: DOMAIN
name: DNA_mismatch_repair_MutS_C
description: DNA mismatch repair protein MutS, C-terminal

phrase: NRKGSLLWVLDRTMTSMGGRTLRKWIEQPLINLHDIKDRLDAVNEFKERFMIRSEVRELLRAVYDIERLMTKVILGSANCRDLISIKHSIGQVPYIKELLRDLKADLNVLSYNELDTLTDVYEIIDKAIVDDPPVAVKEGGIIKEGFNEEVDRLRSASKDGKKWIAHLESKERERTGIKNLKVGFNKVFGYYIEVTKSYYSQVPDDYIRKQTLANCERYITPELKEIENTVLGAEDRLVELEYQIFVDVRNKVAKEINRLKTTARSLARIDVLCSLAEVADRESYTMPEVTDDDKIEIKDGRHPVVEK
type: DOMAIN
name: DNA_mismatch_repair_MutS_core
description: DNA mismatch repair protein MutS, core

phrase: GFNEEVDRLRSASKDGKKWIAHLESKERERTGIKNLKVGFNKVFGYYIEVTKSYYSQVPDDYIRKQTLANCERYITPELKEIENTVLGAED
type: DOMAIN
name: DNA_mismatch_repair_MutS_clamp
description: DNA mismatch repair protein MutS, clamp

phrase: ATRRNLELTETMREKNRKGSLLWVLDRTMTSMGGRTLRKWIEQPLINLHDIKDRLDAVNEFKERFMIRSEVRELLRAVYDIERLMTKVILGSANCRDLISIKHSIGQVPYIKELLRDLKADLNVLSYNELDTLTDVYEIIDKAIVDDPPVAVKEGGIIKEGFNEEVDRLRSASKDGKKWIAHLESKERERTGIKNLKVGFNKVFGYYIEVTKSYYSQVPDDYIRKQTLANCERYITPELKEIENTVLGAEDRLVELEYQIFVDVRNKVAKEINRLKTTARSLARIDVLCSL
type: DOMAIN
name: DNA_mismatch_repair_MutS_core
description: DNA mismatch repair protein MutS, core

phrase: IITGPNMAGKSTYMRQVALIVLMAQIGSFVPAKSAKIGIVDRIFTRVGASDDLAAGQSTFMVEMSEVANILGNATSKSLLVLDEIGRGTSTYDGLSIAWAVIEYIGEKIGARTLFATHYHELTELEERIEGIKNYCISVEEKGEDIIFLRKILRGGADNSYGVQVARLAGIPDPVIHRAKEILKKL
type: DOMAIN
name: DNA_mismatch_repair_MutS_C
description: DNA mismatch repair protein MutS, C-terminal

phrase: TPMMQQYLEIKEQYKDCILFFRLGDFYEMFFSDAEVASRELEITLTGKDCGLEERAPMCGVPFHSADSYIAKLISKGYKVAICEQIEDPALAKGLVKRDVIRIVTPGTVTD
type: DOMAIN
name: DNA_mismatch_repair_MutS-lik_N
description: DNA mismatch repair protein MutS-like, N-terminal

phrase: NYLMSIYKNKNYYGIACVDLTTGEFLSTHITFGNTFNKLMDEIAKFSPSEIVVNGEFFHDENIKKTLKQRFDVYISGLEDKFFEKEFSIQKVRNYFKDYVIEENAFDLYINASGALLEYLEQTQKVNLSHI
type: DOMAIN
name: DNA_mmatch_repair_MutS_con_dom
description: DNA mismatch repair protein MutS, connector domain
Protein sequence:
MAKKNRLNTTQRKTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQLQSLLFKDPELKYLGQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPGAPKIKMKGMKTIEQAKERKNAPRQLAFLSKANEDGEVIEDKSKQPRTKYDKMFERKNQTILSEHYLNITKAQAQEDEDDDFISVKRKDHEINEAELPALTLPTSRRAQKKALSKKASLASKGNASKLIFDDEGEAHPVYELEDEEEFHKRGDAEVQKTEFLTKESAVMADIDNIDKQVAKEKKQEKKRKRLEAMRREMEAAMEEEISGDEEEGKTVAYLGTGNLSDDMSDGDMSDSEGHLKKKARTVDYSHGHNPSNSVDDDIIEVEEPQTLEDLESLTAKLIQG

Annotated regions:
phrase: KFFKDLPISDPTLKGLRESSFIKLTEIQ
type: DOMAIN
name: RNA_helicase_DEAD_Q_motif
description: RNA helicase, DEAD-box type, Q motif

phrase: SFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQ
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain

phrase: HFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARY
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARY
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: IPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKT
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain

phrase: SIKPQLQSLLFKDPELKYLGQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPGAPKIK
type: DOMAIN
name: SPB4-like_CTE
description: ATP-dependent rRNA helicase SPB4-like, C-terminal extension

phrase: KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQLQSL
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: TEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVA
type: DOMAIN
name: DEAD/DEAH_box_helicase_dom
description: DEAD/DEAH box helicase domain

phrase: DPELKYLGQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPGAPK
type: DOMAIN
name: SPB4-like_CTE
description: ATP-dependent rRNA helicase SPB4-like, C-terminal extension

phrase: VLDEADRC
type: CONSERVED_SITE
name: RNA-helicase_DEAD-box_CS
description: ATP-dependent RNA helicase DEAD-box, conserved site
Protein sequence:
MPDELTEPGRATPARASSFLIENLLAAEAKGAGRSTQGDGVREEEEEDDDDPEDEDPEQARRRLQRRRQQRAGSGPGGEARARALGLGPRPPPGPGPPFALGCGGTTRWYPRVHGGYGGGLSPDTSDRDSPETGEEMGRAESAWPRCPGPGTVPREVTTQGPATGGEEAAELAEAPAVAAAATGEARGGRRKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAGPALPFPLAPPAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV

Annotated regions:
phrase: KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKR
type: DOMAIN
name: HD
description: Homeodomain

phrase: GRRKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKR
type: DOMAIN
name: HD
description: Homeodomain

phrase: KRYLSSAERAG
type: DOMAIN
name: HD_metazoa
description: Homeodomain, metazoa

phrase: LQLTETQVKI
type: DOMAIN
name: HD_metazoa
description: Homeodomain, metazoa

phrase: WFQNRRNKW
type: DOMAIN
name: HD_metazoa
description: Homeodomain, metazoa

phrase: LAASLQLTETQVKIWFQNRRNKW
type: CONSERVED_SITE
name: Homeobox_CS
description: Homeobox, conserved site

phrase: KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWK
type: DOMAIN
name: HD
description: Homeodomain

phrase: RKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAA
type: DOMAIN
name: HD
description: Homeodomain
Protein sequence:
MGDTRVTVIGGGLAGTEAAWQLARAGVAVELVEMKPERRSPAHVLPGLAELVCSNSLRSDNPLNAVGLLHEELRRLGSLVLGCADETRVPAGDALAVDRERFSEAVTARLTDHAAVRIVHRELEELPPPPALAVIATGPLTADALAARLAETTGGRLHFYDAIAPIVAAESIDRSIAYARSRYGKGSGDDYLNLPLDEAQYHAFVEALLQGEKVAAHGFEEPRYFEGCLPIEVMAERGLEVLAHGPLKPVGLEDPRTGRRPHAVVQLRREDVDGTAWNLVGFQTRLTWPEQRRIFRAFLPGLANAEFVRLGQIHRNTFVDAPRVLAPDLSVRAAPHLFLAGQITGVEGYVESAACGLLAARAVLDRLAGRAFRPPPPATALGALHRHLTGEAHPPGYDYQPSNVVFALFPPLTGRHRGKAGRKEAHVERARKELAPWIDTAPPTAVPAAPAAG

Annotated regions:
phrase: VTVIGGGLAGTEAAWQLARAGVAVELVEMKPERRSPAHVLPGLAELVCSNSLRSDNPLNAVGLLHEELRRLGSLVLGCADETRVPAGDALAVDRERFSEAVTARLTDHAAVRIVHRELEELPPPPALAVIATGPLTADALAARLAETTGGRLHFYDAIAPIVAAESIDRSIAYARSRYGKGSGDDYLNLPLDEAQYHAFVEALLQGEKVAAHGFEEPRYFEGCLPIEVMAERGLEVLAHGPLKPVGLEDPRTGRRPHAVVQLRREDVDGTAWNLVGFQTRLTWPEQRRIFRAFLPGLANAEFVRLGQIHRNTFVDAPRVLAPDLSVRAAPHLFLAGQITGVEGYVESAACGLLAARAVLDRLA
type: DOMAIN
name: MnmG_N
description: MnmG, N-terminal domain
Protein sequence:
MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQVAHFDLSKYLEPYKIIKAINYFVRPYDVGVWNCELVSNNFHARFSAISRHYIYRIINRTYPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKEYEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLYFIKAEY

Annotated regions:
phrase: AAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKEYEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLYFIKAE
type: DOMAIN
name: PsdUridine_synth_TruA_a/b_dom
description: Pseudouridine synthase I, TruA, alpha/beta domain

phrase: IEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQVAHFDLSKYLEPYKIIKAINYFVRPYDVGVWNCELVSNNFHAR
type: DOMAIN
name: PsdUridine_synth_TruA_a/b_dom
description: Pseudouridine synthase I, TruA, alpha/beta domain
Protein sequence:
MPSYLTRQKTRQTFSWVGRPLPNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKDFAPLPPEVLAALREQEDSPEWQKPLKAKIKNVKSPARNTTEQEVKGIKSNHSTSKFHQTPANIVIPNAKKSLELDGLGFTRKPNTRWSKKSSCDSLDYQKTSKRRAAFSETTSPPKKPNKPREIKPSSALETRVKNGQTQPFCAKSSVVLRARNPAMTTTKLGVDNTLSPIRNGLRSSVVPSGGLTPVYIRRKAKEQETHKEPIRTSRVHRKSSLLTLKRIRQQLCLLDGDDRDQEEEESVDSESEEEDEFISSLPTRNSLGQSRTRQTPSKSPQKNPKPRTPHRATPQIRDRNLAVQEPASALEEARLRLHVSAVPDSLPCREQEFQDIYSFVESKLLDGTGGCMYISGVPGTGKTATVHEVIRCLQQAAETDDVPPFQYVEVNGMKLTEPHQVYVQILKKLTGQKATANHAAELLAKQFCGQGSQKETTVLLVDELDLLWTHKQDVMYNLFDWPTHKGAHLIVLTIANTMDLPERIMMNRVSSRLGLTRMSFQPYSHSQLKQILVSRLRNLRAFEDDAIQLVARKVAALSGDARRCLDICRRATEICELSHLRGDSLSLVTVAHLMEAIDEMFSSSYITAIKNSSVVEQSFLRAIIAEFRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSETMAVCSRLGSCRLLLVEPSRNDLLLRVRLNVSQNDVLFALKEE

Annotated regions:
phrase: EQSFLRAIIAEFRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSETMAVCSRLGSCRLLLVEPSRNDLLLRVRLNVSQND
type: DOMAIN
name: Cdc6_C
description: Cdc6, C-terminal

phrase: IHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKDFAPL
type: DOMAIN
name: BAH_dom
description: Bromo adjacent homology (BAH) domain

phrase: LRAIIAEFRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSETMAVCSRLGSCRLLLVEPSRNDLLLRVRLNVSQNDVLFA
type: DOMAIN
name: Cdc6_C
description: Cdc6, C-terminal

phrase: IHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKDFAPLPP
type: DOMAIN
name: BAH_dom
description: Bromo adjacent homology (BAH) domain

phrase: AIKNSSVVEQSFLRAIIAEFRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSETMAVCSRLGSCRLLLVEPSRNDLLLRVRLNVSQNDVLF
type: DOMAIN
name: Cdc6_C
description: Cdc6, C-terminal

phrase: KQILVSRLRNLRAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEL
type: DOMAIN
name: AAA_lid_10
description: AAA lid domain

phrase: TGGCMYISGVPGTGKTATVHEVIRCLQQAAETDDVPPFQYVEVNGMKLTEPHQVYVQILKKLTGQKATANHAAELLAKQFCGQGSQKETTVLLVDELDLLWTHKQDVMYNLFDWPTHKGAHLIVLTIANTMDLPERIMMNRVSSRLGLTRM
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: IHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKDFAPLPP
type: DOMAIN
name: BAH_dom
description: Bromo adjacent homology (BAH) domain

phrase: MYISGVPGTGKTATVHEVIRCLQQAAETDDVPPFQYVEVNGMKLTEPHQVYVQILKKLTGQKATANHAAELLAKQFCGQGSQKETTVLLVDELDLLWTHKQDVMYNLFDWPTHKGAHLIVLTIANTMDLPERIMMNRVSSRL
type: DOMAIN
name: ATPase_AAA_core
description: ATPase, AAA-type, core
Protein sequence:
MQRLAALFSLQGLPDLKLQQIELDSRKVRFGDLFVALIGHQQDGRAFIPQAIANGASAVLAQTEDRQQHATMTLESQVPIIHYYQLEQHLSAIADKFYDYPSHHLTLVGVTGTNGKTTIAQLLAQWVQLLGKTSAVMGTIGNGLYGKTVEAVNTTGSAVEVQQNLADFLRQGAEFAVMEVSSHGLVQHRVEALQFKTALFSNLSRDHLDYHHTMQAYAAAKFRLFNELDCENRVINADDAIGAEWLRQLPDAVAVSADPSAVLTQAQYLQATAIEYHDDGATIRFGSSWGEGELNSRLIGSFNVSNLLLVTAAMLQLGYSLAKLCLTANQLNGVCGRMEMFSAPNRPMAIVDYAHTPDALQKALQAARLHCKGRLWCVFGCGGDRDRGKRPLMGGIAEQFADVVVLTDDNPRTEDPYLILQDIQTGLRQPQNATVIHGRELALQYCLQQAATDDVVLIAGKGHEDYQIIGDTKLHFSDREIVQQLLEE

Annotated regions:
phrase: GRMEMFSAPNRPMAIVDYAHTPDALQKALQAARLHCKGRLWCVFGCGGDRDRGKRPLMGGIAEQFADVVVLTDDNPRTEDPYLILQDIQTGLRQPQNATVIHGRELALQYCLQQAATDDVVLIAGK
type: DOMAIN
name: Mur_ligase_C
description: Mur ligase, C-terminal

phrase: QQIELDSRKVRFGDLFVALIGHQQDGRAFIPQAIANGASAVLAQTEDRQQHATMTLESQVPIIHYYQLEQHLSAIADKF
type: DOMAIN
name: Mur_ligase_N
description: Mur ligase, N-terminal catalytic domain

phrase: VTGTNGKTTIAQLLAQWVQLLGKTSAVMGTIGNGLYGKTVEAVNTTGSAVEVQQNLADFLRQGAEFAVMEVSSHGLVQHRVEALQFKTALFSNLSRDHLDYHHTMQAYAAAKFRLFNELDCENRVINADDAIGAEWLRQLPDAVAVSADPSAVLTQAQYLQATAIEYHDDGATIRFGSSWGEGELNSRLIGSFNVSNLLLVTA
type: DOMAIN
name: Mur_ligase_cen
description: Mur ligase, central
Protein sequence:
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIQQTLKAADYAFSQMK

Annotated regions:
phrase: VIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGG
type: CONSERVED_SITE
name: Aminotrans_3_PPA_site
description: Aminotransferases class-III pyridoxal-phosphate attachment site