nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MLTMKRLVKNPGIWIVLVVVVGFMIYTFGKVGGYQQIDTSRAETLISTGKVESAKLTPDAINLTLKKGDEFSGDGVKDASRVQSNYVSARGSHLVQLLEKTPPSQGFTDDPGKQNVFVSLLLSILPFILVLGLFWLILSQMQGGGSRVMQFGKSRAKLATKDMPKVTFHDVAGADEAVEELEEIKDFLQAPKKFLDVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANSPAIIFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDILDPALLRPGRFDRQIAVEAPDMAGRHHILQVHAKGKPMVEDIDLLTVARRTPGFSGADLANVLNEAALLTARSNAQIIDNRALDEAIDRVMAGPQKRTRVMSAKERKITAYHEGGHALVASALNYTDPVSKITILPRGRALGYTMVLPADDKYSTTRNELLDQLAYALGGRVAEEIVFHDPSTGASNDIEKATGLARKMVTQFGMSERIGAIKLGSGGGEVFLGRDMGHERDYSEDLAGVVDEEVRRLIEAAHDEAWHALNDNRDLLDQLVLELLEKETLNAEALAELFSTVHKRPRRQVWLSSDARNVSDRPPVLTPAEREAVARGVDLDKQDRQQVDAHPPEAVIEVPDGGYVDPTEG

Annotated regions:
phrase: VILIAATNRPDILDPALL
type: CONSERVED_SITE
name: ATPase_AAA_CS
description: ATPase, AAA-type, conserved site

phrase: DIDLLTVARRTPGFSGADLANVLNEAALLTARSNAQIIDNRA
type: DOMAIN
name: AAA_lid_3
description: AAA ATPase, AAA+ lid domain

phrase: RVMSAKERKITAYHEGGHALVASALNYTDPVSKITILPRGRALGYTMVLPADDKYSTTRNELLDQLAYALGGRVAEEIVFHDPSTGASNDIEKATGLARKMVTQFGMSERIGAIKLGSGGGEVFLGRDMGHERDYSEDLAGVVDEEVRRLIEAAHDEAWHALNDNRDLLDQLVLELLEKETLNAEALA
type: DOMAIN
name: Peptidase_M41
description: Peptidase M41

phrase: GIWIVLVVVVGFMIYTFGKVGGYQQIDTSRAETLISTGKVESAKLTPDAINLTLKKGDE
type: DOMAIN
name: Pept_M41_FtsH_extracell
description: Peptidase M41, FtsH extracellular

phrase: VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANSPAIIFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDILDPALLRPGRFDRQIAV
type: DOMAIN
name: ATPase_AAA_core
description: ATPase, AAA-type, core

phrase: IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANSPAIIFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDILDPALLRPGRFDRQIAVEAP
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain
Protein sequence:
MNNLVLVGFMGTGKSSVGRELARLLQWSFIDTDLEIEKETGLSIPEIFCRHGEEYFRRQEGEILQRVMAGERQVVATGGGAVIRKENRELFRSRGLVIGLRADPEVIWERAGAKGDRPLLQRRRQLAVLLAEREPYYRDVDLTLDTSHRSPKELAKLLLELLGWQGRDHFSLQLIRVNLPQVGYNIFIQPGIISRAAFYLPAGLGRRVLVISDTRVGSLYGPALLAALEEGNYQPTLKMVAEGEGAKELAVVADLYQAALAAGMERHCPIIALGGGVIGDLAGFVAATFLRGVPFIQIPTTLLAQVDSSVGGKVGINLPQGKNLVGSFYQPRAVLADPALLATLSPRDLRAGLAEVVKYGLAFSPGLFQLLEREVASCPALDAQIMTTIIAECCRLKAAIVARDEREEHGQRMLLNLGHTIGHAVEQAAGYGTFRHGEAVAVGLVAACLLSVKLGFLKPAILQRVKGLLTGIGLPTHLYGINVKDVFVNLAYDKKVRGGKVPFVLLQDLGQPVIVEDVPGEAILAVLKDLEAGK

Annotated regions:
phrase: RRQEGEILQRVMAGERQVVATGGGA
type: CONSERVED_SITE
name: Shikimate_kinase_CS
description: Shikimate kinase, conserved site

phrase: GLAEVVKYGLAFSPGLFQLLEREVASCPALDAQIMTTIIAECCRLKAAIVARDEREEHGQRMLLNLGHTIGHAVEQAAGYGTFRHGEAVAVGLVAACLLSVKLGFLKPAILQRVKGLLTGIGLPTHLYGINVKDVFVNLAYDKK
type: DOMAIN
name: DHQS_C
description: 3-dehydroquinate synthase, C-terminal domain

phrase: MVAEGEGAKELAVVADLYQAALAAGMERHCPIIALGGGVIGDLAGFVAATFLRGVPFIQIPTTLLAQVDSSVGGKVGINLPQGKNLVGSFYQPRAVLADPALLATLSPRDL
type: DOMAIN
name: DHQS/DOIS_N
description: 3-dehydroquinate synthase, N-terminal domain
Protein sequence:
MLYIVGTPIGNLEDITYRAVDVLKSVNVIFAEDTRVTIKLLSRYKINKKMISCNAVTENKKIRLLLDYLAKGDSVAFVSDAGTPGLSDPGSLLVAAAFREGYKVCPIPGVSSFNTIVSVNPFRDKSVLFEGFLPNKGLKRFKKIAELYKRGDAFVLLESGHRLLKLLVEISSVSLDAKILIGREMTKIYEEYQIGKPLELKKYFESSKEKVKGEFTILVSRSSS

Annotated regions:
phrase: SDAGTPGLSDP
type: CONSERVED_SITE
name: SAM_MeTrfase_RsmI_CS
description: SAM-dependent methyltransferase RsmI, conserved site

phrase: MLYIVGTPIGNLEDITYRAVDVLKSVNVIFAEDTRVTIKLLSRYKINKKMISCNAVTENKKIRLLLDYLAKGDSVAFVSDAGTPGLSDPGSLLVAAAFREGYKVCPIPGVSSFNTIVSVNPFRDKSVLFEGFLPNKGLKRFKKIAELYKRGDAFVLLESGHRLLKLLVEISSVSLDAKILIGREMTKI
type: DOMAIN
name: 4pyrrol_Mease
description: Tetrapyrrole methylase
Protein sequence:
MRVRGILRNCQQWWTWAVLGFWMLMIYNVAGNLWVTIYYGVPVWKDAKTTLFCASDAKAYEKEVHNVWATHACVPTDPDPQELVLGNVTENFNMWKNDMVDQMNEDIISLWDQSLKPCVKLTPLCVTLNCSNDVTKNVTATSNSTDMKNCSFNATTEIRDKVKKEYALFYRLDIVPLKENNNFSYRLINCNTSTITQACPKVSFDPIPIHYCAPAGFAILKCNNKTFNGTGPCSNVSTVQCTHGIKPVVSTQLLLNGSLAEGDIIIRSENITNNAKTIIVHFNKSVEIECVRLNNNTRKSIRIGPGQAFYAHGDIIGDPRQAHCNISKTNWNKTLQEVSIKLREHFPNKTIKFNQSSGGDIEITTHSFNCGGEFFYCNTSSLFNSTYWPNGTYWPNDTERNSTNASITLQCRIKQIINMWQKVGRAMYAPPIEGIITCKSNITGLLLTRDGGRNETEETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAIERYLKDQQLLGIWGCSGKHICTTTVPWNVSWSNKTYDEIWKNMTWMQWDREIDSYTGTIYRLLEDSQIQQEKNEEDLLALDSWNNLWNWFSITKWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPSPRGLDRLGEIEEGGGEQGRDSSIRLVSGFLSLAWDDLRSLCLFSYHRLRDFIL

Annotated regions:
phrase: VQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAIERYLKDQQLLGIWGCSGKHICTTTVPWNVSWSNKTYDEIWKNMTWMQWDREIDSYTGTIYRLLEDSQIQQEKNEEDLLALD
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: LWVTIYYGVPVWKDAKTTLFCASDAKAYEKEVHNVWATHACVPTDPDPQELVLGNVTENFNMWKNDMVDQMNEDIISLWDQSLKPCVKLTPLCVTLNCSNDVTKNVTATS
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120

phrase: NDVTKNVTATSNSTDMKNCSFNATTEIRDKVKKEYALFYRLDIVPLKENNNFSYRLINCNTSTITQACPKVSFDPIPIHYCAPAGFAILKCNNKTFNGTGPCSNVSTVQCTHGIKPVVSTQLLLNGSLAEGDIIIRSENITNNAKTIIVHFNKSVEIECVRLNNNTRKSIRIGPGQAFYAHGDIIGDPRQAHCNISKTNWNKTLQEVSIKLREHFPNKTIKFNQSSGGDIEITTHSFNCGGEFFYCNTSSLFNSTYWPNGTYWPNDTERNSTNASITLQCRIKQIINMWQKVGRAMYAPPIEGIITCKSNITGLLLTRDGGRNETEETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120

phrase: MGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAIERYLKDQQLLGIWGCSGKHICTTTVPWNVSWSNKTYDEIWKNMTWMQWDREIDSYTGTIYRLLEDSQIQQEKNEEDLLALDSWNNLWNWFSITKWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTL
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like
Protein sequence:
MEKANETSPVMGFVLLRLSAHPELEKTFFVLILLMYLVILLGNGVLILVTILDSRLHTPMYFFLGNLSFLDICFTTSSVPLVLDSFLTPQETISFSACAVQMALSFAMAGTECLLLSMMAFDRYVAICNPLRYSVIMSKAAYMPMAASSWAIGGAASVVHTSLAIQLPFCGDNVINHFTCEILAVLKLACADISINVISMEVTNVIFLGVPVLFISFSYVFIITTILRIPSAEGRKKVFSTCSAHLTVVIVFYGTLFFMYGKPKSKDSMGADKEDLSDKLIPLFYGVVTPMLNPIIYSLRNKDVKAAVRRLLRPKGFTQ

Annotated regions:
phrase: GNGVLILVTILDSRLHTPMYFFLGNLSFLDICFTTSSVPLVLDSFLTPQETISFSACAVQMALSFAMAGTECLLLSMMAFDRYVAICNPLRYSVIMSKAAYMPMAASSWAIGGAASVVHTSLAIQLPFCGDNVINHFTCEILAVLKLACADISINVISMEVTNVIFLGVPVLFISFSYVFIITTILRIPSAEGRKKVFSTCSAHLTVVIVFYGTLFFMYGKPKSKDSMGADKEDLSDKLIPLFYGVVTPMLNPII
type: DOMAIN
name: GPCR_Rhodpsn_7TM
description: GPCR, rhodopsin-like, 7TM
Protein sequence:
MESYLNENFDVKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRIAVLVSKAAFQFISGVSPSDYTVPEDVKAAGFEICADELGSIVESHDVKKLKFHGGVDGLAGKLKASPTDGLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGSHDGLGIAASILLVVFVTATSDYRQSLQFRDLDKEKKKITVQVTRNGFRQKLSIYDLLPGDIVHLAIGDQVPADGLFLSGFSVVIDESSLTGESEPVMVNAQNPFLMSGTKVQDGSCKMMITTVGMRTQWGKLMATLTEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGMFMRKLSTGTHWVWSGDEALELLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKSCICMNVQDVANKGSSLQSEIPESAVKLLIQSIFNNTGGEVVVNKHGKTELLGTPTETAILELGLSLGGKFQEERKSYKVIKVEPFNSTKKRMGVVIELPEGGRMRAHTKGASEIVLAACDKVVNSSGEVVPLDEESIKYLNVTINEFANEALRTLCLAYMDIEGGFSPDDAIPASGFTCVGIVGIKDPVRPGVKESVELCRRAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFREKNQEELLELIPKIQVMARSSPMDKHTLVKQLRTTFDEVVAVTGDGTNDAPALHEADI

Annotated regions:
phrase: ALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKSCICMNVQDVANKGSSLQSEIPESAVKLLIQSIFNNTGGEVVVNKHGKTELLGTPTETAILELGLSLGGKFQEERKSYKVIKVEPFNSTKKRMGVVIELPEGGRMRAHTKGASEIVLAACDKVVNSSGEVVPLDEESIKYLNVTINEFANEALRTLCLAYMDIEGGFSPDDAIPASGFTCVGIVGIKDPVRPGVKESVELCRRAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFREKNQEELLELIPKIQVMARSSPMDKHTLVKQLRTTFDEVVAVTGDGTNDAPALHEAD
type: DOMAIN
name: P_typ_ATPase_HD_dom
description: P-type ATPase, haloacid dehalogenase domain

phrase: LNENFDVKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRY
type: DOMAIN
name: Ca_ATPase_N_dom
description: Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain

phrase: HGGVDGLAGKLKASPTDGLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEALQDMTLMILGVCAFV
type: DOMAIN
name: ATPase_P-typ_cation-transptr_N
description: Cation-transporting P-type ATPase, N-terminal

phrase: DKTGTL
type: PTM
name: ATPase_P-typ_P_site
description: P-type ATPase, phosphorylation site

phrase: GVDGLAGKLKASPTDGLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEALQDMTLMILGVCAFVSLIVG
type: DOMAIN
name: ATPase_P-typ_cation-transptr_N
description: Cation-transporting P-type ATPase, N-terminal
Protein sequence:
MGRTETAIDKVAILGGETIHCGFHLIPYIVETVLSTLQSSTYVLFTDSHLAPLYLDEFASAFEAAIAALPPTTEARPRWITHVVKPGETSKSRETKAELEDFLLSHRCTRDTVVLALGGGVVGDLVGFVAATFMRGIRYCQIPTTLLAMVDSAVGGKTAIDTPLGKNLIGAFYQPSYVFIDASFLESLPRREFVNGMAECVKTAAIWDEDEFAKLESGVADIHAAVSGATTRESHAGRTLATRSPAQALLLSVIRASIATKAHIVTVDEKETGLRNLVNFGHTIGHAIEAVVTPDVLHGECVAVGMVLEAEVARSMGALGNAAVGRLTRCLKAHGLPTSLDDPLFRKSAKSARLNVETLLDIMRVDKKNSGSVKKVVILSRIGKTLEERATGVQDDVIARVLAPAVRVHPGPPTKATFELATPGSKSISNRALVLAALGNGTCRLGNLLHSDDTQVMMAALHEMKGAEFAWEDNGELLVVKGHGGKLSPPKDNKELYLGNAGTAARFLTTVCALVEPDDNVQGGGGDSTTITGNARMKQRPIGPLVDALTANGTAVEYVEGPGALPLKIAATREGFRGGRIQLAASVSSQYVSSILLCAPYAREEVVLELTGGVVISQPYIDMTLAMMKSFGISAERLVDAEGKLTDTYRIPRGTYTNPATYNIESDASSATYPLALAAITGTTCTIHNIGSASLQGDARFAKDVLEPMGCTVVQTETETTVTGPPVGQLRALGFVDMEPMTDAFLTASALAAVASLPPLEGRLQDAN

Annotated regions:
phrase: VVKPGETSKSRETKAELEDFLLSHRCTRDTVVLALGGGVVGDLVGFVAATFMRGIRYCQIPTTLLAMVDSAVGGKTAIDTPLGKNLIGAFYQPSYVFIDASFLESLPRREF
type: DOMAIN
name: DHQS/DOIS_N
description: 3-dehydroquinate synthase, N-terminal domain

phrase: TFELATPGSKSISNRALVLAALGNGTCRLGNLLHSDDTQVMMAALHEMKGAEFAWEDNGELLVVKGHGGKLSPPKDNKELYLGNAGTAARFLTTVCALVEPDDNVQGGGGDSTTITGNARMKQRPIGPLVDALTANGTAVEYVEGPGALPLKIAATREGFRGGRIQLAASVSSQYVSSILLCAPYAREEVVLELTGGVVISQPYIDMTLAMMKSFGISAERLVDAEGKLTDTYRIPRGTYTNPATYNIESDASSATYPLALAAITGTTCTIHNIGSASLQGDARFAKDVLEPMGCTVVQTETETTVTGPPVGQLRALGFVDMEPMTDAFLTASALAAVAS
type: DOMAIN
name: Enolpyruvate_Tfrase_dom
description: Enolpyruvate transferase domain

phrase: GMAECVKTAAIWDEDEFAKLESGVADIHAAVSGATTRESHAGRTLATRSPAQALLLSVIRASIATKAHIVTVDEKETGLRNLVNFGHTIGHAIEAVVTPDVLHGECVAVGMVLEAEVARSMGALGNAAVGRLTRCLKAHGLPTSLDDPLFRKSAKSARLNVETLLDIMRVDKK
type: DOMAIN
name: DHQS_C
description: 3-dehydroquinate synthase, C-terminal domain

phrase: LYLGNAGTAARFLT
type: CONSERVED_SITE
name: EPSP_synthase_CS
description: 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site
Protein sequence:
MKLNKLLCPWIDDVISELEITGISNDSRSVKAGDLFIAYPGHASDGRQFIPQAVKNGAAAVLFDPQGWKISEPDTSTVYIPLANLVSKQAELAARFYQNPSDSLYVTGVTGTNGKTTIAYQLAQAHELLSAKSAYIGTLGFGKADELQSLANTTPDAFCLQQLFSQFRQSDISQVCMEVSSHALDQGRTDCIRFSQGIFTNLTHDHLDYHHTMDEYAEAKAKLFAFPELKWAIVNQDDKYTPQILKSVSADCQLLSYGVHQQADVRATEHEISLTGTRIRLNSPWGSHELQIRALGYFNIYNALAIFSSLMAAGYPVSEVVDTMSKLRAAPGRMEIVSQEPYTIVDYAHTPDALKNVLETLNGVKKGKIIAVFGCGGDRDKTKRPIMGQIASDNADIVIMTSDNPRTEDPVQILDEIEQGIHKRDNLYKIANREEAIAKAVSLASADDIVLVAGKGHESYQQVGSIRHHFSDQEVLNRYVNRTE

Annotated regions:
phrase: VTGTNGKTTIAYQLAQAHELLSAKSAYIGTLGFGKADELQSLANTTPDAFCLQQLFSQFRQSDISQVCMEVSSHALDQGRTDCIRFSQGIFTNLTHDHLDYHHTMDEYAEAKAKLFAFPELKWAIVNQDDKYTPQILKSVSADCQLLSYGVHQQADVRATEHEISLTGTRIRLNSPWGSHELQIRALGYFNIYNALA
type: DOMAIN
name: Mur_ligase_cen
description: Mur ligase, central

phrase: GRMEIVSQEPYTIVDYAHTPDALKNVLETLNGVKKGKIIAVFGCGGDRDKTKRPIMGQIASDNADIVIMTSDNPRTEDPVQILDEIEQGIHKRDNLYKIANREEAIAKAVSLASADDIVLVAGK
type: DOMAIN
name: Mur_ligase_C
description: Mur ligase, C-terminal

phrase: EITGISNDSRSVKAGDLFIAYPGHASDGRQFIPQAVKNGAAAVLFDPQ
type: DOMAIN
name: Mur_ligase_N
description: Mur ligase, N-terminal catalytic domain
Protein sequence:
MPGGRRGLVAPQNTFLENIIRRSNSQPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVMQKSCRYVCGFMYGELTDKETVGRLEYTLENQQQDQFEILLYKKNNLQCGCALSQFGKAQTQETPLWLLLQVAPIRNERDLVVLFLLTFRDITALKQPIDSEDTKGVLGLSKFAKLARSVTRSRQFSAHLPTLKDPTKQSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIIDLLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGRSDADNGIQYSWLWKLANVTQSPYSYIWSNDTGPELVNGPSRKSMYVTALYFTMTCMTSVGFGNVAAETDNEKVFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTEKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFMMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGKGDVFGDQFWKDSAVGQSAANVRALTYCDLHAIKRDKLLEVLDFYSAFANSFARNLVLTYNLRHRLIFRKVADVKREKELAERRKNEPQLPQNQDHLVRKIFSKFRRTPQVQAGSKELVGGSGQSDVEKGDGEVERTKV

Annotated regions:
phrase: IVYCNESFCKISGYNRAEVMQKSCRYVCGFMYGELTDKETVGRLEYTLENQQQD
type: DOMAIN
name: PAS
description: PAS domain

phrase: AFRLASDGCLRALAMHFMMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGKGDVFGDQFWKDSAVGQSAANVRALTYCDLHAIKRDKLLEVLDFYSAFANSFARNLVLT
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: ALSQFGKAQTQETPLWLLLQVAPIRNERDLVVLFLLTFRDITALKQPIDSED
type: DOMAIN
name: PAS-assoc_C
description: PAS-associated, C-terminal

phrase: DFPIVYCNESFCKISGYNRAEVMQKSCRYVCGFMYGELTDKETVGRLEYTLENQQQDQFEILLYKKNNLQCGCALSQFGKAQTQETPLWLLLQVAPIRNERDLVVLFLLTFRD
type: DOMAIN
name: PAS
description: PAS domain

phrase: APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGKGDVFGDQFWKDSAVGQSAANVRALTYCDLHAIKRDKLLEVL
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: PGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGKGDVFGDQFWKDSAVGQSAANVRALTYCDLHAIKRDKLLEV
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIIDLLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGRSDADNGIQYSWLWKLANVTQSPYSYIWSNDTGPELVNGPSRKSMYVTALYFTMTCMTSVGFGNVAAETDNEKVFTICMMIIAALLYATIFGHVTTIIQQMTSA
type: DOMAIN
name: Ion_trans_dom
description: Ion transport domain

phrase: AFRLASDGCLRALAMHFMMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGKGDVFGDQFWKDSAVGQSAANVRALTYCDLHAIKRDKLLEVLDFYSAFANSF
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: VDFPIVYCNESFCKISGYNRAEVMQKSCRYVCGFMYGELTDKETVGRLEYTLENQQQDQFEILLYKKNNLQCGCALSQFGKAQTQETPLWLLLQVAPIRNERDLVVLFLLTFRDIT
type: DOMAIN
name: PAS
description: PAS domain
Protein sequence:
MEKVVLAFSGGLDTSVCVKLLQEKYNMEVITACVDVGQPEDEIKKPEAAAQKIGSDKHYTIDAKDEFAKEYAFRCIKTNSLYEGYPLSTAYARPLIAKKIVEIAKKENASTIAHGCTGKGNDQFRFEATIRSESDLDIVAPVRDYNLTRTEEQDYAREHGIPLPSEKIYSIDENLWGRSIEGGLLENPATAAPEEIYEWTKSTVDAPETPQIVKIEFVNGEPVKINDEELEPVALIRKANEIAGNNGIGRIDMVEDRIIGLKSRENYETPGAILLITAHAALEKLIFSREEIKFAENLSQKYAELVYNGLWNEPLREDLDVVNDHMQQRVTGTVEVRLHKGSMKVITKESPYALYNEENVSFEDKGIDQREMIGMVKYYDLQGAEYSKVKRE

Annotated regions:
phrase: AFSGGLDT
type: CONSERVED_SITE
name: Arginosuc_synth_CS
description: Argininosuccinate synthase, conserved site

phrase: KVVLAFSGGLDTSVCVKLLQEKYNMEVITACVDVGQPEDEIKKPEAAAQKIGSDKHYTIDAKDEFAKEYAFRCIKTNSLYEGYPLSTAYARPLIAKKIVEIAKKENASTIAHGCTGKGNDQFRFEATIRSESDLDIVAPVRDYNLTRTEEQDYAREHGI
type: DOMAIN
name: Arginosuc_syn_N
description: Arginosuccinate synthase-like, N-terminal domain

phrase: YSIDENLWGRSIEGGLLENPATAAPEEIYEWTKSTVDAPETPQIVKIEFVNGEPVKINDEELEPVALIRKANEIAGNNGIGRIDMVEDRIIGLKSRENYETPGAILLITAHAALEKLIFSREEIKFAENLSQKYAELVYNGLWNEPLREDLDVVNDHMQQRVTGTVEVRLHKGSMKVITKESPYALYNEENVSFEDKGIDQREMIGMVKYYDLQGA
type: DOMAIN
name: Arginosuc_syn_C
description: Arginosuccinate synthase C-terminal domain

phrase: GCTGKGNDQFR
type: CONSERVED_SITE
name: Arginosuc_synth_CS
description: Argininosuccinate synthase, conserved site
Protein sequence:
MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQGQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT

Annotated regions:
phrase: QPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPD
type: DOMAIN
name: SWIB_domain
description: SWIB domain

phrase: QFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTA
type: DOMAIN
name: SWIB_MDM2_domain
description: SWIB/MDM2 domain

phrase: YQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLL
type: DOMAIN
name: SWIB_MDM2_domain
description: SWIB/MDM2 domain

phrase: LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPD
type: DOMAIN
name: SMARCD3_SWIB_dom
description: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 3, SWIB domain
Protein sequence:
MIATRPQQVAATSLAELADGLAASTDLERHGDLDVAVTGISLSTARTQPGDVYAALPGTRAHGADFAAQALEAGAVGVLTDATGLDRLPPGVPAVVVEDPRRVLGRLAAAIYGDPATRLRVIGVTGTQGKTTTTRLLEQALTTSGVPAAVVGTVGTRIAGQDVKTELTTPEAPDLHGLFAVMAEQGVDTCAMEVSSHALVLGRVDGVVFDVATFLNLGRDHLDFHRDVDDYFAAKASMFTSERAALGLTNVDDEFGRRLLDVATIPMSTYSSAGRDADWRATDVELSATGATFTVLGPDVEVRAAVALPGEFSVSNALAAIASAALAGLDPKLVADGIAGVDGVPGRLEQVSRGQDFTVVVDYAHKPDALEAVLATLRPLTQGQLVVVIGAGGDRDTLKRPLMGEIAARLADVLIVTDDNPRTEDPAAIRAAVLAGTRGGRAEVVEEGDRRLAIREAVRRAQPGDVVLIAGKGHETGQKVGSVEHPFDDRVVASEEIQAVIDSSSRSSP

Annotated regions:
phrase: VTGTQGKTTTTRLLEQALTTSGVPAAVVGTVGTRIAGQDVKTELTTPEAPDLHGLFAVMAEQGVDTCAMEVSSHALVLGRVDGVVFDVATFLNLGRDHLDFHRDVDDYFAAKASMFTSERAALGLTNVDDEFGRRLLDVATIPMSTYSSAGRDADWRATDVELSATGATFTVLGPDVEVRAAVALPGEFSVSNALAAIAS
type: DOMAIN
name: Mur_ligase_cen
description: Mur ligase, central

phrase: GRLEQVSRGQDFTVVVDYAHKPDALEAVLATLRPLTQGQLVVVIGAGGDRDTLKRPLMGEIAARLADVLIVTDDNPRTEDPAAIRAAVLAGTRGGRAEVVEEGDRRLAIREAVRRAQPGDVVLIAGK
type: DOMAIN
name: Mur_ligase_C
description: Mur ligase, C-terminal

phrase: VTGISLSTARTQPGDVYAALPGTRAHGADFAAQALEAGAVGVLTDATGLDRLPPGVPAVVVEDPRRVLGRLAAA
type: DOMAIN
name: Mur_ligase_N
description: Mur ligase, N-terminal catalytic domain
Protein sequence:
MSKEGLPEVATIDATGISVAVISATWNADICDRLHERALAHAQQLGAEADGFRVVGALEIPVAVQEAARHYDAVVALGCVIRGGTPHFDYVCDSVTQGLTRIALDTSKPIANGVLTVNTHDQAVDRSGAPGAAEDKGVEAMQAALDTVLQLRNIKERASKRGL

Annotated regions:
Protein sequence:
MPGDVEGCQHLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYVYQTELETLRFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLLDQMHTESGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEKVQYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNFNQDDVDYQLYSVVCHKGTLDTGHYIAYTYYQNQWFLLDDTTIVEVKESEVLNSQAYLLFYHERQILYSDEMTVKTEN

Annotated regions:
phrase: GIQNLGATCFMSVIL
type: CONSERVED_SITE
name: USP_CS
description: Ubiquitin specific protease, conserved site

phrase: CSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYVYQT
type: DOMAIN
name: Znf_UBP
description: Zinc finger, UBP-type

phrase: YQLYSVVCHKGTLDTGH
type: CONSERVED_SITE
name: USP_CS
description: Ubiquitin specific protease, conserved site

phrase: EGCQHLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYVYQTELETLRFKIKNIKAW
type: DOMAIN
name: Znf_UBP
description: Zinc finger, UBP-type

phrase: RGIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLLDQMHTESGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEKVQYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNFNQDDVDYQLYSVVCHKGTLDTGHYIAYTYYQNQWFLLDDTTIVEVKESEVLNSQAYLLF
type: DOMAIN
name: Peptidase_C19_UCH
description: Peptidase C19, ubiquitin carboxyl-terminal hydrolase

phrase: RGIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLLDQMHTESGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEKVQYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNFNQDDVDYQLYSVVCHKGTLDTGHYIAYTYYQNQWFLLDDTTIVEVKESEVLNSQAYLLFYHE
type: DOMAIN
name: USP_dom
description: Ubiquitin specific protease domain

phrase: RCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGH
type: DOMAIN
name: Znf_UBP
description: Zinc finger, UBP-type
Protein sequence:
MPRFSCYEVRSEFPELERGIVYLDNAASTLKPRRVVEAMREFSYRSYANVHRGVHRLSMEASKAYEDAHEVVARLVGGSWDEVVFTRNTTEAMQLAALTLAYNGLLRGGEVLVTAADHHSTLLPWVRAARLGGGRARILPLDGRGVPRWDLLEDYITEDTRAVAVGHVSNVTGVVAPVEDIVKAAKKVGALVVLDSAQGVPHLPVDFRRMGVDMAAFSGHKMLGPTGIGVLWARRDLLEELEPPLGGGGTVSRVRLQGGSVEIEWEEPPWKFEAGTPPIIEAVGLAEAANMLMEIGMEHVARHEDELTSHTMKLLEPLYSEGLIRYVGPDKPGERHGIVSITTHLKSPDELGLLLDRRGIAVRTGLHCAHILHDHVDASMGSVWASFYIYNCKEDAERLAEALEEILTTRR

Annotated regions:
phrase: VDMAAFSGHKMLGPTGIGV
type: BINDING_SITE
name: Aminotrans_V_PyrdxlP_BS
description: Aminotransferase class-V, pyridoxal-phosphate binding site

phrase: VYLDNAASTLKPRRVVEAMREFSYRSYANVHRGVHRLSMEASKAYEDAHEVVARLVGGSWDEVVFTRNTTEAMQLAALTLAYNGLLRGGEVLVTAADHHSTLLPWVRAARLGGGRARILPLDGRGVPRWDLLEDYITEDTRAVAVGHVSNVTGVVAPVEDIVKAAKKVGALVVLDSAQGVPHLPVDFRRMGVDMAAFSGHKMLGPTGIGVLWARRDLLEELEPPLGGGGTVSRVRLQGGSVEIEWEEPPWKFEAGTPPIIEAVGLAEAANMLMEIGMEHVARHEDELTSHTMKLLEPLYSEGLIRYVGPDKPGERHGIVSITTHLKSPDELGLLLDRRGIAVRTGLHCAHILHDHVDASMGSVWASFYIYNCKEDAER
type: DOMAIN
name: Aminotrans_V_dom
description: Aminotransferase class V domain
Protein sequence:
MNLFLKKLLKNDATGGVVLIVAAAFAMFLANNDSTRHAYQAMLTLPVQFRFGALDINKDLLLWINDALMALFFLMIGLEVKRELMMGSLKGRERAMFPLIAALGGMLAPGLIYAAFNHQDAQAIHGWAIPTATDIAFALGILALLGSRVPAALKMFLMALAVIDDLGAIVIIALFYTSELSLISLTVAAASIAVLAVLNGCGVRKTSVYLAVGMVLWVAVLKSGVHATLAGVIVGLFIPLKKQEGHSPAIELAHGLHPWVSWLILPLFAFANAGISLSGVSLNGLFSAVPLGITLGLFIGKPLGITLICWLAVKLKIAALPENTRLIDIAAVGVLCGIGFTMSIFIASLAFDGAHEELVTLAKLGILSGSVISALVGYTLLRVKLR

Annotated regions:
Protein sequence:
MDLLATGRIRGTFGIEGFVKVESFSGEYEHFLGFDRVFLSILKEKLREQKYKDGWFEIEEVNLRKADALVKFKGIDNPEAAKCLTGSELFIPRDKAAPLDEGEVYVHDLCNCNLVCEGTLVGKITSVAEGGGGYLLEIAGKTSEAAAESSFYVPFNKEFIGKIDLKAKTVELMHRWILE

Annotated regions:
phrase: VHDLCNCNLVCEGTLVGKITSVAEGGGGYLLEIAGKTSEAAAESSFYVPFNKEFIGKIDLKAKTVELMHRWI
type: DOMAIN
name: PRC_RimM
description: Ribosome maturation factor RimM, PRC barrel domain

phrase: TGRIRGTFGIEGFVKVESFSGEYEHFLGFDRVFLSILKEKLREQKYKDGWFEIEEVNLRKADALVKFKGIDNPEAAKCLTGSELFIPR
type: DOMAIN
name: RimM_N
description: RimM, N-terminal
Protein sequence:
MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRGRQSDYGTQLREKQKVRRIYGVLERQFRGYYQAAASKKGATGENLLQMLECRLDNVVYRMGFGSTRSESRQLVSHKAISVNGKTVNIPSYQVRPGDVVSVREKSLNQLRIVQALELCAQRGRVEWVDVDAAKKSGVFKNVPARSDLSADINENLIVELYSK

Annotated regions:
phrase: RLDNVVYRMGFGSTRSESRQLVSHKAISVNGKTVNIPSYQVRPGDV
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: RYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRGRQSDYGTQLREKQKVRRIYGVLERQFRGYYQAAASKKGATGENLLQML
type: DOMAIN
name: Ribosomal_uS4_N
description: Small ribosomal subunit protein uS4, N-terminal

phrase: CRLDNVVYRMGFGSTRSESRQLVSHKAISVNGKTVNIPSYQVRPGDVVSVREKSLNQLRIVQALE
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: LECRLDNVVYRMGFGSTRSESRQL
type: CONSERVED_SITE
name: Ribosomal_uS4_CS
description: Small ribosomal subunit protein uS4, conserved site

phrase: RYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRGRQSDYGTQLREKQKVRRIYGVLERQFRGYYQAAASKKGATGENLLQML
type: DOMAIN
name: Ribosomal_uS4_N
description: Small ribosomal subunit protein uS4, N-terminal
Protein sequence:
MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTLNSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGILKDYSHRV

Annotated regions:
phrase: QANQTDISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDV
type: DOMAIN
name: TFIIE_bsu_DNA-bd
description: Transcription factor TFIIE beta subunit, DNA-binding domain

phrase: SPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWY
type: DOMAIN
name: TFA2_Winged_2
description: TFA2, Winged helix domain 2

phrase: SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYD
type: DOMAIN
name: TFIIE_bsu_DNA-bd
description: Transcription factor TFIIE beta subunit, DNA-binding domain

phrase: ISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDV
type: DOMAIN
name: TFIIE_bsu_DNA-bd
description: Transcription factor TFIIE beta subunit, DNA-binding domain

phrase: LKCIDEEFVKMWENVQLPQFAELPRKLQDLGL
type: DOMAIN
name: TFA2_E-tether
description: Transcription initiation factor IIE subunit beta, E-tether
Protein sequence:
MGSKWSKCSPVGWPQIRERMRRAGPPAPEPAATGVGAASRDLERHGAITSSNINNPTCTWLQAQEENEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLDGLIYSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPIDPDKVEELNEGENNCLLHPASLHGMDDPEREVLVWKFDSRLAFHHIAREQHPEFYKDC

Annotated regions: