nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MSDYKHTLNLPKTGFPMRGNLAKREPERLAGWYQTDLYGRLRRERAGKPRFVLHDGPPYANGDIHIGHAVNKILKDIIIKARSMDGYDVPYVPGWDCHGLPIELMVEKKRGKAGAKVSPRAFRDACREFAASQVDGQREDFKRLGVLGDWDNPYLTMDYRTEADILRALGRIIQRGHVTRGFKPVHWCADCGSALAEAEVEYEEKTSPAIDVRFAVLEPEELDRRAGLGGEAAAAGRVAIPIWTTTPWTLPANQAVALHPELEYVVVAFDDELLVLAAELVESAMARYEVDDYRVVGRCDGAVLEGLRLAHPFLEREVPVILGGHVTTDGGTGAVHTAPGHGQDDYVVGQQYDLPTDNPVDGNGVFLPDTPFFAGQHVFKANPKVVDLLAERGALLHHEPYRHSYPHCWRHKTPILFRATPQWFISLDKAGMREHAMAAIKGVSWHPEWGQARIESMVNGRPDWCISRQRNWGVPIALFVDKRSGEPHPESERLIEAVARRVEEAGVDAWFELDPAELLGADAERYEKVTDILDVWFDSGVTHATVLERRDELQVPADLYLEGSDQHRGWFQSSLLTSVGVRETAPYKGVLTHGFTVDEKGHKMSKSRGNVVAPQKVMDTLGADILRLWVASSDYSAEMAVSDGILKRTADAYRRMRNTARFLLANLNGFEPAEHAVAPPDMLPLDRWAVDRAYLLQQQVREAYERYEFHRIYQMVHNFCVVDLGGFYLDVIKDRQYTTKPDSLARRSCQTALWHVAEGLVRWLAPIISFTAEEIWEHLPGERSDSVLLETWYEGLFPLDDSDPFGRAFWDDVLAVRAGVNRELEQLRNDKVIGASLQAEVQLFCPPELKAKLDRLGDELRFVLITSEARVEDLERAPVESVEVPGENGQGFRLFAAASQHPKCTRCWHHRPDVGHHADHPELCGRCVSNVDGEGETRHYA

Annotated regions:
phrase: VSDGILKRTADAYRRMRNTARFLLANLNGFEPAEHAVAPPDMLPLDRWAVDRAYLLQQQVREAYERYEFHRIYQMVHNFCVVDLGGFYLDVIKDRQYTTKPDSLARRSCQTALWHVAEGLVRWLAPIISFTAEEIWEHLPGERSDSVLLETWYEGLFPLDDSDPFGRAFWDDVLAVRAGV
type: DOMAIN
name: Anticodon_Ile_BEm
description: Isoleucyl tRNA synthetase type 1, anticodon-binding domain

phrase: DRWAVDRAYLLQQQVREAYERYEFHRIYQMVHNFCVVDLGGFYLDVIKDRQYTTKPDSLARRSCQTALWHVAEGLVRWLAPIISFTAEEIWEHLPGERSDSVLLETWYEGLFPLDDSDPFGRAFWDDVLAVRAGVNRELEQLRNDKVIGASLQAEV
type: DOMAIN
name: M/V/L/I-tRNA-synth_anticd-bd
description: Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding

phrase: KCTRCWHHRPDVGHHADHPELCGRCVS
type: DOMAIN
name: Znf_FPG/IleRS
description: Zinc finger, FPG/IleRS-type

phrase: PYANGDIHIGH
type: CONSERVED_SITE
name: aa-tRNA-synth_I_CS
description: Aminoacyl-tRNA synthetase, class I, conserved site

phrase: LAGWYQTDLYGRLRRERAGKPRFVLHDGPPYANGDIHIGHAVNKILKDIIIKARSMDGYDVPYVPGWDCHGLPIELMVEKKRGKAGAKVSPRAFRDACREFAASQVDGQREDFKRLGVLGDWDNPYLTMDYRTEADILRALGRIIQRGHVTRGFKPVHWCADCGSALAEAEVEYEEKTSPAIDVRFAVLEPEELDRRAGLGGEAAAAGRVAIPIWTTTPWTLPANQAVALHPELEYVVVAFDDELLVLAAELVESAMARYEVDDYRVVGRCDGAVLEGLRLAHPFLEREVPVILGGHVTTDGGTGAVHTAPGHGQDDYVVGQQYDLPTDNPVDGNGVFLPDTPFFAGQHVFKANPKVVDLLAERGALLHHEPYRHSYPHCWRHKTPILFRATPQWFISLDKAGMREHAMAAIKGVSWHPEWGQARIESMVNGRPDWCISRQRNWGVPIALFVDKRSGEPHPESERLIEAVARRVEEAGVDAWFELDPAELLGADAERYEKVTDILDVWFDSGVTHATVLERRDELQVPADLYLEGSDQHRGWFQSSLLTSVGVRETAPYKGVLTHGFTVDEKGHKMSKSRGNVVAPQKVMDTLGADILRLWVASSDYSAEMA
type: DOMAIN
name: aa-tRNA-synth_Ia
description: Aminoacyl-tRNA synthetase, class Ia
Protein sequence:
MARIAGVNIPVHKHAWVALTSIYGVGRTRAKAICDEAGVPRDRKVKELTEQELEAIRTALGKYEVEGDLRRAVAMDIKRLMDLGCYRGIRHRRGLPVRGQRTQTNARTRKGPRRGPAGK

Annotated regions:
phrase: RGIRHRRGLPVRG
type: CONSERVED_SITE
name: Ribosomal_uS13_CS
description: Small ribosomal subunit protein uS13, conserved site
Protein sequence:
MAAEGSTQQRRRVMAAASAASTSGAGRCRLSKIGASRRPPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLTQKPITSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERCFYLDTVSALNFAARSKEVINRPFTNESLQPHVLGPVKLSQKELLGPPEAKRARGPEEEEIGSPEPMAAPASASQKLSPLQKLSSMDPAMLERLLSLDRLLASQGSQGAPLLSTPKRERMVLMKTVEEKDLEIERLKTKQKELEAKMLAQKAEEKENHCPTMLRPLSHRTVTVAKPLKKAVVMPLQLIQEQAASPNAEIHILKNKGRKRKLESLDALEPEEKAEDCWELQISPELLAHGRQKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKANILGLAAGQRCGPS

Annotated regions:
phrase: GQNASVLAYGPTGAGKTHTML
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: TRLNQRSSRSHAVLLVK
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: KLYLIDLAGSEDNRRTGN
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: VPYRDSKLTRLLQDSLGGSAH
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: PARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLTQKPITSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERCFYLDTVSALNFAARSKEVINRPFTN
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: RLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLTQKPITSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERCFYLDTVSALNFAARSKE
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: EDLERVEGITGKQMESFLK
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: RDLRSLQRIGPKKAQLIVG
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: RVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLTQKPITSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERCFYLDTVSALNFAARSKE
type: DOMAIN
name: Kinesin_motor_dom
description: Kinesin motor domain

phrase: GKLYLIDLAGS
type: CONSERVED_SITE
name: Kinesin_motor_CS
description: Kinesin motor domain, conserved site
Protein sequence:
MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASEIVVAEVIFAVDESVDATRCQGREGCQGGDRCLTHALWRDLSDRITGFLSSISLEELVNNQEVLDVAGRQDNDKRRAPNGRAQETINVNLRP

Annotated regions:
phrase: LRKNGLVSSVRGPGGGYL
type: CONSERVED_SITE
name: TR_Rrf2-type_CS
description: Transcription regulator Rrf2-type, conserved site
Protein sequence:
MFGLSVNHAYAGPGIFINDGTDDGCIWTFDKEDYSPIGDYFGNTAPADKDSAGRNSPASVKYHIPSIQQLGGAATLKCLSKDRDTQTDRVLFYGNSKEQGSISLTLGGELFVNNGNLGLGGGTDTKAMRIGSMATLTGPSGLRSLAIGAGEIATVASGDDAIAIGTAAQAAHVGSIALGLQSTTELPSLVKDVTINGIKLSAFAGSNPASVLSIGNDTLKRSITNVGAGRVSKDSTDAVNGRQLFAVSEQAASGWSLTVNGMDKSRVGPGDTVDLSNSDGNLVLSKKGKDVTFNLASDLKVTSLVAGNTFLDTNGLVITGGPSMTVSGIDAGQLKISHVADGAVTVTSTDAVNGSQLHRVAHTIAEHLGGDAHVNADGSVIGPQYTVQKKRYKTIYDAFGGVDENLANINDILHDIESGGGIKYFHANSIGADSRALGTNSIAVGSDSVASGEGSISVGNGAQASAHGSVALGENAAAPDANSVALGAGSKTSEVVATKGTTINGQYYDFAGDAPSGTVSVGDKGAERTITNVAAGRISVESTDAVNGSQLNAVNQAIENLAAGVTENDKFSVKYDRHSDGTKKNSMTLQGWDSATPVVLANVADGVHKNDAVNVSQLKAGLSTTLGEAKAYTDQTALQTLDQANAYTDKKFGKLNEDIVATRIEARQAAAIGLAAASLRYDDRPGKISAAIGGGFWRGEGAVALGLGHTSEDQRMRSNLSAATSGGNWGMGAGFSYTFN

Annotated regions:
phrase: YDDRPGKISAAIGGGFWRGEGAVALGLGHTSEDQRMRSNLSAATSGGNWGMGAGFSYT
type: DOMAIN
name: YadA_C
description: Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain

phrase: NVADGVHKNDAVNVSQLKAGLSTTLGEAKAYTDQ
type: DOMAIN
name: Coiled_stalk_dom
description: Trimeric autotransporter adhesin YadA-like, stalk domain

phrase: ITNVGAGRVSKDSTDAVNGRQLFAVSEQAASGWSLTVNGMD
type: DOMAIN
name: Coiled_stalk_dom
description: Trimeric autotransporter adhesin YadA-like, stalk domain

phrase: KISHVADGAVTVTSTDAVNGSQLHRVAHTIAEHLGGDAHVNA
type: DOMAIN
name: Coiled_stalk_dom
description: Trimeric autotransporter adhesin YadA-like, stalk domain

phrase: TITNVAAGRISVESTDAVNGSQLNAVNQAIENLAAGVTE
type: DOMAIN
name: Coiled_stalk_dom
description: Trimeric autotransporter adhesin YadA-like, stalk domain

phrase: ASGEGSISVGNGAQASAHGSVAL
type: DOMAIN
name: Adhesin_Head_dom
description: Trimeric autotransporter adhesin YadA-like, head domain

phrase: ASAHGSVALGENAAAPDANSVALGAG
type: DOMAIN
name: Adhesin_Head_dom
description: Trimeric autotransporter adhesin YadA-like, head domain

phrase: ASGDDAIAIGTAAQAAHVGSIALGL
type: DOMAIN
name: Adhesin_Head_dom
description: Trimeric autotransporter adhesin YadA-like, head domain

phrase: ALGTNSIAVGSDSVASGEGSISVGNG
type: DOMAIN
name: Adhesin_Head_dom
description: Trimeric autotransporter adhesin YadA-like, head domain

phrase: IGADSRALGTNSIAVGSD
type: DOMAIN
name: Adhesin_Head_dom
description: Trimeric autotransporter adhesin YadA-like, head domain
Protein sequence:
MILALPIFYLSILTIFLLILNWLIFQQLKTILLLESQFKYFVDKSQNRKLEPDESFAFAKVCVAKKYFSKAIIEGQLALKNYRDLNILDNNIVIANLYNMLGFIYFEAGQTSFAKNFYEQALQINPNYVVALNNLAKIYEEVKDLKKAESLYDKVLTLNLNNKTANRRKDFIAKTKNI

Annotated regions:
phrase: VVALNNLAKIYEEVKDLKKAESLYDKVLTLNLN
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: ANLYNMLGFIYFEAGQTSFAKNFYEQALQINPN
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: ANLYNMLGFIYFEAGQTSFAKNFYEQALQINPN
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: VVALNNLAKIYEEVKDLKKAESLYDKVLTLNLN
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat
Protein sequence:
MDLSFTTKSVKINGQNHRILLQNENGPCALLALANILILSPDHTRFSNELIRLVNKGSQISLKELIEVLADIALQVTDKPSTDISELLSLLPRLHEGLNINPEFNGSFENTKEMSIFRLFNVDVVHGWVINSFINENIDEKLSHYSYESAQRILTQAADINCGISQDENSDEVLRDAMHLGLFLNESPTQLTAFGLLRLREKLLHNKFSILFRNDHFSTLFKYEDRLYTLVTDFGYKNCKDIVWQSLDSVDGSCDAFFAGNFSAAEVNGQQLSTDIERDFGTGNLLLEEIQQIENDKELAKQLQEQEQERVTKFEAKRKIHSHKKNSEIHAPVKKDKFKRRSSLLNAKASEKEKSECVVM

Annotated regions:
phrase: ANILILSPDHTRFSNELIRLVNKGSQISLKELIEVLADIALQVTDKPSTDISELLSLLPRLHEGLNINPEFNGSFENTKEMSIFRLFNVDVVHGWVINSFINENIDEKLSHYSYESAQRI
type: DOMAIN
name: MINDY_domain
description: MINDY deubiquitinase domain
Protein sequence:
MLLSFLPLLPLATAALTYRGADISSLLIEEDAGIAYKNLNGQTQALESILADNGVNSIRQRLWVNPSDGSYDLDYNLKLAKRAKAAGMSVYLDLHYSDTWADPSHQTTPAGWSTDDIGTLAWQVYNYTKEVCDTFAANDIALEMVSIGNEIRNGLLWPLGATDSYPNIARLLHSGAWGVKDSALATTPQILLHLDNGWDWAAQKYFYDTVLAAGSELTSADFDLIGVSYYPFYNADATLSALKTSLGNLASAYGKKVLVVETNWPVACPNPEYQFPADLADIPFSVDGQSTFLRRLGEVVAGTDGGAGVYYWEPAWTKNAGLGSSCQDNLLVDYNTDQVRASISALGGI

Annotated regions:
Protein sequence:
MALSVIRNNHIIFVLKQIGVRTKHRENNNSKYVESFTCDELERYIYSNPDCTLFETLKDEEYYSNVRVFFDVDMDGRLDDKYQATHNFVNIITKFVADYAYNDCKMISNHRDKDKMITDMKSNFSITESTDKEKTSFHLIFFNCYTTLDTLINMRKKLIVLTKESNNRLVKAIDTSVYRHKPSLRIVGTKKDSINIHVHKKTKQNIHFKNYLFTYVDYNEEDCYYFVSEQQHQSPDLLNWKEEYIPFHDAIKKISKAIGNSIINLKDITAENFTVTPLDIYYATPCNLCKKVSHKHPHHLLISNDCIRIYKSGNPNSCKIKTISLEGNKLFSISQQIIDLNVINVSDRGEYLVWLKNVWRMCEDDNNITKLILYMRDHLSSDCTDLLLCPRNRKVIEHNLKDMLIDTIETDTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDDIQPKTKENFENRELYEQILSSCLMGTTKQCIFFFYGETATGKSTTKKLLKSVMHNMFLETGQVILTEQMDKGPNPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLTEPCVVGRSCYSNKINNRNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTNTKKKVHNSKYDFIKPLNESLDSKIQSNYFRYAFLKILLGWFSKYHVPNLRILPTPDKIPDFKFRLKVESLIIPSNSTHVKYVDKLMKLGYITDDDGIPVLQLNIFQQKLSLHFNVKLYGQDIDSFIMKNKKYMNLADEYMSFIFIEDLNTINEPRNT

Annotated regions:
phrase: ENRELYEQILSSCLMGTTKQCIFFFYGETATGKSTTKKLLKSVMHNMFLETGQVILTEQMDKGPNPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLTEPCVVGRSCYSNKINNRNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTNTKKKVH
type: DOMAIN
name: Helicase_SF3_DNA-vir
description: Helicase, superfamily 3, DNA virus

phrase: PTPDKIPDFKFRLKVESLIIPSNSTHVKYVDKLMKLGYITDDDGIPVLQLNIFQQKLSLHFNVKLYGQDIDSFIMKNKKYMNLADEYMSFIFIEDL
type: DOMAIN
name: DNA_primase/NTPase_C
description: DNA primase/nucleoside triphosphatase, C-terminal

phrase: LNVINVSDRGEYLVWLKNVWRMCEDDNNITKLILYMRDHLSSDCTDLLLCPRNRKVIEHNLKDMLIDTIETDTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDDI
type: DOMAIN
name: Phage/plasmid_primase_P4_C
description: Bacteriophage/plasmid primase, P4, C-terminal
Protein sequence:
MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR

Annotated regions:
phrase: KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: GNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLM
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: GCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRR
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: NCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQT
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type
Protein sequence:
MIEKNWQELIRPMKPEIEPGHDPARQAKIVAEPLERGFGMTLGNALRRVLLSSLQGAAVTNVHIDGVVHEFSSIDGVREDVTDIVLNIKQIALRMHGEGPKRVVLKKSGPGIVTAGDIEETADVEIVNKDLALCTLDEGAEIRMEFTINTGKGYVPSERNRPEDAPIGLIGVDALYSPVKRVSYKVENTREGQVLDYDKLTLEVETDGTVTPEDSVAFAARILQDQFQIFINFEEAVEARPAEDDKPELDFNPALLRKVDELELSVRSANCLKNDNIVYIGDLIQKSEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMEAPNWPPENIEDLAKRFEDHV

Annotated regions:
phrase: EPLERGFGMTLGNALRRVLLSSLQGAAVTNVHIDGVVHEFSSIDGVREDVTDIVLNIKQIALRMHGEGPKRVVLKKSGPGIVTAGDIEETADVEIVNKDLALCTLDEGAEIRMEFTINTGKGYVPSERNRPEDAPIGLIGVDALYSPVKRVSYKVENTREGQVLDYDKLTLEVETDGTVTPEDSVAFAARILQDQ
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: NPALLRKVDELELSVRSANCLKNDNIVYIGDLIQKSEAEMLRTPNFGRKSLNEIKEVL
type: DOMAIN
name: RNAP_asu_C
description: RNA polymerase, alpha subunit, C-terminal

phrase: VHIDGVVHEFSSIDGVREDVTDIVLNIKQIALRMHGEGPKRVVLKKSGPGIVTAGDIEETADVEIVNKDLALCTLDEGAEIRMEFTINTGKGYVPSERNRPEDAPIGLIGVDALY
type: DOMAIN
name: DNA-dir_RNA_pol_insert
description: DNA-directed RNA polymerase, insert domain

phrase: QAKIVAEPLERGFGMTLGNALRRVLLSSLQGAAVTNVHIDGVVHEFSSIDGVREDVTDIVLNIKQIALRMHGEGPKRVVLKKSGPGIVTAGDIEETADVEIVNKDLALCTLDEGAEIRMEFTINTGKGYVPSERNRPEDAPIGLIGVDALYSPVKRVSYKVENTREGQVLDYDKLTLEVETDGTVTPEDSVAFAARILQDQFQIFIN
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Protein sequence:
MSKSLQAIRGMNDILPEQSPLWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYTFEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHERPQKGRYRQFHQIGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSARLEQLDEDSQRRLKSNPLRILDSKDPNTQAVLVGAPKLEDYLDEDSRVHFEGLKARLDAAGIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAMGIERLILLLETLGKVPASINRQIDVYLCAFGEQAELAGLRLSESLRDRLPGLRLAVNAGGGSFKSQFKKADKSGALFALILGDDELAKQEIGLKPLRGQGEQQNIAWDALAEHLETAIAQA

Annotated regions:
phrase: GMNDILPEQSPLWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYTFEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHERPQKGRYRQFHQIGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSARLEQLDEDSQRRLKSNPLRILDSKDPNTQAVLVGAPKLEDYLDEDSRVHFEGLKARLDAAGIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAMGIER
type: DOMAIN
name: HisRS-like_core
description: Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

phrase: QIDVYLCAFGEQAELAGLRLSESLRDRLPGLRLAVNAGGGSFKSQFKKADKSGALFALILGDDELAKQEIGLKPLRGQGEQQNIAWDALAEH
type: DOMAIN
name: HisRS_anticodon
description: Histidyl-anticodon-binding

phrase: LWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYTFEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHERPQKGRYRQFHQIGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSARLEQLDEDSQRRLKSNPLRILDSKDPNTQAVLVGAPKLEDYLDEDSRVHFEGLKARLDAAGIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAMGIERLILLL
type: DOMAIN
name: HisRS-like_core
description: Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

phrase: MSKSLQAIRGMNDILPEQSPLWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYTFEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHERPQKGRYRQFHQIGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSARLEQLDEDSQRRLKSNPLRILDSKDPNTQAVLVGAPKLEDYLDEDSRVHFEGLKARLDAAGIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAMGIERLILLLETLGKVPASINRQIDVYLCAFGEQAELAGLRLSESLRDRL
type: DOMAIN
name: aa-tRNA-synth_II
description: Aminoacyl-tRNA synthetase, class II

phrase: VYLCAFGEQAELAGLRLSESLRDRLPGLRLAVNAGGGSFKSQFKKADKSGALFALILGDDELAKQEIGLKPLRGQGEQQNIAWDALAEH
type: DOMAIN
name: Anticodon-bd
description: Anticodon-binding
Protein sequence:
MDNNDTYLHLSSSLQVAHGHLSSPPSQPPLSSMVSHHHPSIINGLGSPYSVITSSSLGSPSASMPTTSNMGYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYPCGSPGSLSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERSDNEVDSSSSFNEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT

Annotated regions:
phrase: NSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFK
type: DOMAIN
name: Nucl_hrmn_rcpt_lig-bd
description: Nuclear hormone receptor, ligand-binding domain

phrase: ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMK
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: KHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKR
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: CAICGDRSSGKHYGVYSCEGCKGFFK
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: NEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA
type: DOMAIN
name: Nucl_hrmn_rcpt_lig-bd
description: Nuclear hormone receptor, ligand-binding domain

phrase: QAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSI
type: DOMAIN
name: Nucl_hrmn_rcpt_lig-bd
description: Nuclear hormone receptor, ligand-binding domain

phrase: CAICGDRSSGKHYGVY
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: SCEGCKGFFKRTIRK
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: RNRCQYCR
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: YQKCLAMG
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: KHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQ
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: PLSSMVSHHHPSIINGLGSPYSVITSSSLGSPSASMPTTSNMGYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYPCGSPGS
type: DOMAIN
name: Nuc_recep-AF1
description: Nuclear/hormone receptor activator site AF-1
Protein sequence:
MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKENREVGDWRKNIDALSGMEGRKKKFES

Annotated regions:
Protein sequence:
MQRDTSLRDPFATEDESSASEIGRAPERRLRIPQNQLRNADERCEIRSPQPVPGPGLPRSIAVRTETAATSKDAPAPAPSLRLSLGLPRSRTKAHSGQTSDATNITSTARQADDAVRNTDSDALLSRLSALKLGYLPSEPFTQEFSSTLPSNGGHPTGRSGFPQPHHPGSSIRRSPLINIGTYLRCSTIDAEVESFLRQGCEQKQIISVGAGSDSRYWRIMADTDLSRRLHHYVEIDFEENTSQKLSRILKSPILRASLDTNSSVYGVPLSHLSQFSLGVPCHTGSESRQFDVIRSSKYSLLAADVRSLHPDTPSAERIDLEHLLGPASTGLDSTLPTLILFECVLAYIAPDRADWLIRHLGQRFAAVQALSYDIALAGDAHPSAKAVACVSSESESSECGQTVGTADSAISTSTTVASPAPPSRFGRVMLQNLEMRKLSLPGARAYPTIHAQSQRFAQAWSDSQALQIETSGRSLFSIWSDLGAEQRSRLSRLEGLDEVEEIDMLLQHYCIVQARRQRP

Annotated regions:
Protein sequence:
MEKKELSACVPFMGFSGKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIYSTDEKLPINLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHPFKRICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHMLHIGYPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLPQDMKDILLYLKK

Annotated regions:
phrase: RLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGE
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: ILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHPFKRICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHMLHIGYPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIE
type: DOMAIN
name: PsdUridine_synth_RsuA/RluA
description: Pseudouridine synthase, RsuA/RluA-like

phrase: IHRLDKDTSGLMVI
type: CONSERVED_SITE
name: PsdUridine_synth_RluA-like_CS
description: Pseudouridine synthase, RluA-like, conserved site

phrase: KRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIYSTDEKLPINLPQ
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: NILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHPFKRICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHML
type: DOMAIN
name: PsdUridine_synth_RsuA/RluA
description: Pseudouridine synthase, RsuA/RluA-like
Protein sequence:
MAHKKGTGSTRNGRDSNSKRLGVKAYGGESVTAGSILIRQRGTSVMPGVNVGRGKDDTLFALTDGIVKFESIRRGLRNRKRITVAAAE

Annotated regions:
phrase: GSILIRQRGTSVMP
type: CONSERVED_SITE
name: Ribosomal_bL27_CS
description: Large ribosomal subunit protein bL27, conserved site
Protein sequence:
MDIRKFFGVISSGKKPVNETVKNEKTKASEGTVKGKKGVKEAKVNNSGKEDASKPKQHSKKKRIIYDSDSESEETVQVKNAKKKSEKLSLSYKPGKVSQKDPVTYVSETDEDDDFVCKKAASKSKENGVSTNSYLGTSNVKKNEENVKTKNKPLSPIKLTPTSVLDYFGTESVQRSGKKMVTSKRKESSQNTEDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDEEPKIKKARKDSEEGEESFSSVQDDLSKAEKQKSPNKAELFSTARKTYSPAKHGKGRASEDAKQPCKSAHRKEACSSPKASAKLALMKAKEESSYNETELLAARRKESATEPKGEKTTPKKTKVSPTKRESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTGPALDSEYSEEFQEDDTQSEKEQDAVETDAMIKKKTRSSKPSKSEREKESKKGKGKNWKK

Annotated regions:
phrase: ENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDL
type: DOMAIN
name: BRCT_dom
description: BRCT domain

phrase: SFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRV
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: PRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTY
type: DOMAIN
name: RFC_lid
description: Replication factor C, lid domain

phrase: ICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYN
type: DOMAIN
name: DNA_replication_fac_RFC1_C
description: DNA replication factor RFC1, C-terminal

phrase: LLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRF
type: DOMAIN
name: ATPase_AAA_core
description: ATPase, AAA-type, core

phrase: ENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRT
type: DOMAIN
name: BRCT_dom
description: BRCT domain

phrase: GAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLI
type: DOMAIN
name: BRCT_dom
description: BRCT domain
Protein sequence:
MATEYGDDDGGLYFHSTQMQSIHESLQQEENQRLYLQTSIKKLESFKHVNNDSSNNSNSGAVSVVQIKKKAATKKRKLMARKPNVKKPKSSSEAVRQAFEKDKFAYFTNNQAKIDDFLPGKSTSTEPSTSNQGSLISSDEWNYIKQIYLQKPTKNKTTLKSIRKRIKQYENSGTGMWEIAALNVDVSLNDEDIQHLYALDEEQMVSDDNSSTEDDTDPTQNDGLILTLSQNCSTQRDICHHEKDDQKYILIDSSICETYQQDKSLQRHSQKDSDNGNTIPDQNSAITIGEMESTAAHEVEEIFSTPSYVPSNKLNADQDRSDESESSIIMLADNIVSTQPDIVESISDSESEIEIIERPRLQVLRSVYENGTSTNQTRQELTMPKCLENNKISENEEYESEVVESDSTPIITPVVTPTKKPHIFPTNEPAIPIALRSTPNKIKNNVDRIFGSPSPIKLVLESPLKKHINIEFSDSESIYSTAVSQFGTPKQTTSFSPEVLTQKVGSPPLDACSDSGPTGVVSSMPYKKPHSTKRLRTTTLEISAALRVKNYTDPKNNITVKKFGEEIKREFIDLDNEIPDSESSDDDTGFSIIEITRQVEECKEPANDDYSEEQSTDLFQIGLKNKQETGNTSHMQVPSSPELQFENAGNTFLNSSLVEEDEFTKLKATELRERFKDWGLKPVQRKDKMLEILQGISDFISPESLLALKGFDLQQCVFDKLELLIKQDQFWYDRILTFEPIRLEELKQWLNSHNHHLELDILRLYCDRNCITTTNT

Annotated regions: