nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MKTALPDFNHANILVVGDIMLDRYWYGGTNRISPEAPVPVVKIDALEERPGGAANVAMNITSLGGNARLIGLTGIDEPAKILNEKLNERHVQCDFVSVPTHPTITKLRVLSRNQQLIRIDFEEGFGNIDLAPMLERIQIALNSHKVMILSDYAKGALSAVQSIIELANQANVAILVDPKGTDFERYRGATLLTPNMSEFEAVVGHCDSEEAIIEKGHQLIKQYDLKALLVTRSEKGMTLLQLDKPTYHLPTQAKEVFDVTGAGDTVIATLATALASGQSLEDSCFLANAAAGVVVGKLGTSTVSQVELGNAIRARTDDGFGVMTESELKEEVRKARIRGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDESVKQLKGESRPINPLMQRMIVLGALNSVDWVVPFTEETPQRLIASILPDILVKGGDYKPEEIAGGKEVIAAGGSVKVLNFEDGCSTTNIINAIKNR

Annotated regions:
phrase: NILVVGDIMLDRYWYGGTNRISPEAPVPVVKIDALEERPGGAANVAMNITSLGGNARLIGLTGIDEPAKILNEKLNERHVQCDFVSVPTHPTITKLRVLSRNQQLIRIDFEEGFGNIDLAPMLERIQIALNSHKVMILSDYAKGALSAVQSIIELANQANVAILVDPKGTDFERYRGATLLTPNMSEFEAVVGHCDSEEAIIEKGHQLIKQYDLKALLVTRSEKGMTLLQLDKPTYHLPTQAKEVFDVTGAGDTVIATLATALASGQSLEDSCFLANAAAGVVVGKLGTS
type: DOMAIN
name: PfkB_dom
description: Carbohydrate kinase PfkB

phrase: MTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDESVKQLKGESRPINPLMQRMIVLGALNSVDWVVPFTEETPQRLIASILPDILVKGGDYKPEEIAGGKEVIAAGGSVKVLNFEDGCSTTNII
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain

phrase: IVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDESVKQLKGESRPINPLMQRMIVLGALNSVD
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain

phrase: PDFNHANILVVGDIMLDRYWYGGTNRISPEAPVPVVKIDALEERPGGAANVAMNITSLGGNARLIGLTGIDEPAKILNEKLNERHVQCDFVSVPTHPTITKLRVLSRNQQLIRIDFEEGFGNIDLAPMLERIQIALNSHKVMILSDYAKGALSAVQSIIELANQANVAILVDPKGTDFERYRGATLLTPNMSEFEAVVGHCDSEEAIIEKGHQLIKQYDLKALLVTRSEKGMTLLQLDKPTYHLPTQAKEVFDVTGAGDTVIATLATALASGQSLEDSCFLANAAAGVVVGKLGTSTVSQVELGNA
type: DOMAIN
name: RfaE_dom_I
description: RfaE bifunctional protein, domain I

phrase: GGAANVAMNITSLGGNARLIGLT
type: CONSERVED_SITE
name: Carboh/pur_kinase_PfkB_CS
description: Carbohydrate/purine kinase, PfkB, conserved site

phrase: VRKARIRGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDESVKQLKGESRPINPLMQRMIVLGALNSVDWVVPFTEETPQRLIASILPDILVKGGDYKPEEIAGGKEVIAAGGSVKVLNFEDGCSTTNIINAI
type: DOMAIN
name: RfaE_dom_II
description: RfaE bifunctional protein, domain II

phrase: NILVVGDIMLDRYWYGGTNRISPEAPVPVVKIDALEERPGGAANVAMNITSLGGNARLIGLTGIDEPAKILNEKLNERHVQCDFVSVPTHPTITKLRVLSRNQQLIRIDFEEGFGNIDLAPMLERIQIALNSHKVMILSDYAKGALSAVQSIIELANQANVAILVDPKGTDFERYRGATLLTPNMSEFEAVVGHCDSEEAIIEKGHQLIKQYDLKALLVTRSEKGMTLLQLDKPTYHLPTQAKEVFDVTGAGDTVIATLATALASGQSLEDSCFLANAAAGVVVGKLGTSTVSQVE
type: DOMAIN
name: RfaE_dom_I
description: RfaE bifunctional protein, domain I
Protein sequence:
MGLEALVPLAMIVAIFLLLVDLMHRHQRWAARYPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREAMVTRGEDTADRPPAPIYQVLGFGPRSQGVILSRYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFADQAGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLPHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAKKEKAKGSPESSFNDENLRIVVGNLFLAGMVTTSTTLAWGLLLMILHLDVQRGRRVSPGCPIVGTHVCPVRVQQEIDDVIGQVRRPEMGDQAHMPCTTAVIHEVQHFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWKKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVAAGQPRPSHSRVVSFLVTPSPYELCAVPR

Annotated regions:
phrase: FSAGRRACL
type: CONSERVED_SITE
name: Cyt_P450_CS
description: Cytochrome P450, conserved site
Protein sequence:
MNTGIIIVAAGRGTRAGGELPKQWQCVGGQPVARWTLAAFAGRGPIVMVIHPDDRAEAEAAAQGLDVRLVSGGAERAASVLAGLEALADFALDKVLIHDVARPCVTATVIEAVLAALDTHAGAAPALAVTDALWTGDAGQVSGTQDRTGLFRAQTPQGFDFAQILSAHRAHTGGAADDVAVARAAGMTVAIVPGDEANLKITEAGDFSRAAKQLRGNMDVRLGNGFDVHAFEDGDHVMLCGVAVPHTHKLKGHSDADVGMHAVTDALYGALAEGDIGRHFPPSDPKWKGAESAIFLRHAVNLARDRGYAIGNIDLTLICERPKIGPHAAEMTSKMADIMDLDSSRISIKATTSEQLGFTGRKEGIAALATATLVSS

Annotated regions:
phrase: VRLGNGFDVHAFEDGDHVMLCGVAVPHTHKLKGHSDADVGMHAVTDALYGALAEGDIGRHFPPSDPKWKGAESAIFLRHAVNLARDRGYAIGNIDLTLICERPKIGPHAAEMTSKMADIMDLDSSRISIKATTSEQLGFTGRKEGIAALATATLV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: SDADVGMHAVTDALY
type: CONSERVED_SITE
name: MECDP_synthase_CS
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site

phrase: VLIHDVA
type: CONSERVED_SITE
name: ISPD_synthase_CS
description: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site

phrase: RLGNGFDVHAFEDGDHVMLCGVAVPHTHKLKGHSDADVGMHAVTDALYGALAEGDIGRHFPPSDPKWKGAESAIFLRHAVNLARDRGYAIGNIDLTLICERPKIGPHAAEMTSKMADIMDLDSSRISIKATTSEQLGFTGRKEGIAALATAT
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: RLGNGFDVHAFEDGDHVMLCGVAVPHTHKLKGHSDADVGMHAVTDALYGALAEGDIGRHFPPSDPKWKGAESAIFLRHAVNLARDRGYAIGNIDLTLICERPKIGPHAAEMTSKMADIMDLDSSRISIKATTSEQLGFTGRKEGIAALATAT
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: RLGNGFDVHAFEDGDHVMLCGVAVPHTHKLKGHSDADVGMHAVTDALYGALAEGDIGRHFPPSDPKWKGAESAIFLRHAVNLARDRGYAIGNIDLTLICERPKIGPHAAEMTSKMADIMDLDSSRISIKATTSEQLGFTGRKEGIAALATATL
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: EAGDFSRAAKQLRGNMDVRLGNGFDVHAFEDGDHVMLCGVAVPHTHKLKGHSDADVGMHAVTDALYGALAEGDIGRHFPPSDPKWKGAESAIFLRHAVNLARDRGYAIGNIDLTLICERPKIGPHAAEMTSKMADIMDLDSSRISIKATTSEQLGFTGRKEGIAALATATL
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Protein sequence:
MSKPKVYVVGVGMTKFEKPGRRDDFDYPQMAVESVTKALQDAKISIQKVDQACVGYVYGDSTCGQRALYEIGMTGIPIYNVNNNCSTGSTALYLGKQIIESQNAQCVLVLGFEKMESGSLSAKFLDRTNPMDKHVTLMGDLVGLDGAPITAQLFGNAALEYMNKNGIKPETLAKIAYKNHKHSVNNPYSQFQKEYTLKEILESPKVFGPLTKLQCCPTSDGSAAAILASEKFVIENNLQDQAIEIVGMEMATDPPTTFSGQSCVQIIGYDMTKLAADKLFSKTTIKPEDVDVVELHDCFSANELITYDALGLCKPGKAGEFVESGSNTYGGQVVVNPSGGLISKGHPLGATGIAQCSELYWQLLGKADKRQVPGAKVALQQNIGLGGAVIVALYKQGFPKTSPAPKKEVAKPTTDKDPTIFKVYKIFKILEEAMLDDKENIIERVRGIYCFKVMNTQGQEGMWIIDAKNGKGSITFYGTGKPDVTFTMKDDDVVELISGKLNPQKAFFQGKIKIQGNMGLALKLVDLQKLMSHKIAELRSKL

Annotated regions:
phrase: MTKLAADKLFSKTTIKPEDVDVVELHDCFSANELITYDALGLCKPGKAGEFVESGSNTYGGQVVVNPSGGLISKGHPLGATGIAQCSELYWQLLGKADKRQVPGAKVALQQNIG
type: DOMAIN
name: Thiolase_C_2
description: Thiolase, C-terminal domain 2

phrase: VYVVGVGMTKFEKPGRRDDFDYPQMAVESVTKALQDAKISIQKVDQACVGYVYGDSTCGQRALYEIGMTGIPIYNVNNNCSTGSTALYLGKQIIESQNAQCVLVLGFEKMESGSLSAKFLDRTNPMDKHVTLMGDLVGLDGAPITAQLFGNAALEYMNKNGIKPETLAKIAYKNHKHSVNNPYSQFQKEYTLKEILESPKVFGPLTKLQCCPTSDGSAAAILAS
type: DOMAIN
name: Thiolase_N
description: Thiolase, N-terminal

phrase: DDKENIIERVRGIYCFKVMNTQGQEGMWIIDAKNGKGSITFYGTGKPDVTFTMKDDDVVELISGKLNPQKAFFQGKIKIQGNMGLALKLVDL
type: DOMAIN
name: SCP2_sterol-bd_dom
description: SCP2 sterol-binding domain

phrase: VNNNCSTGSTALYLGKQI
type: ACTIVE_SITE
name: Thiolase_acyl_enz_int_AS
description: Thiolase, acyl-enzyme intermediate active site

phrase: NPSGGLISKGHPLGAT
type: CONSERVED_SITE
name: Thiolase_CS
description: Thiolase, conserved site
Protein sequence:
MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQKRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTALNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVCKAMEAVAAQGKAKK

Annotated regions:
phrase: LIRHGESTW
type: ACTIVE_SITE
name: PG/BPGM_mutase_AS
description: Phosphoglycerate/bisphosphoglycerate mutase, active site
Protein sequence:
MVVIRAPLKELEGRYGREIVDLILRYSSIIGYSVDHDEELKIEFNPDRPDLFSFPTLMKQIKIFFYGEVEIRKPQIRDDAVKVTVSKGVRDIRPYFSALIAEGSSIGVHFDELINYQEILHASIGKDRSKMAIGIHDLEKTGDSIHYTTVSRNQRMQTYDGMEGTVDWIIKNHEKGIAYGRLLPGTGRSVAITDNEGNILSLPPIVNSYRSRIDEGTKKFFVDITGTDLNSVKFAHHLMSNFFSSLKYRIRTPSIDGLPSRETEIIRAFDFRIMRPARRSIERYLGEKMDSEETITHLRRMGYVAEPGYPEIAVYVPGYRVDVMGEADIIEDILKSKGIENIEEKQIFIGKFGEPLFMNKVKDLARDTMIGLGFQEVMTFVLSPASYLQEYTGGVRIQNPKSEDYSVIRDKIYPDLLDLIARNKKHSLPQRIFEIGDKIVGGKQRTALSCVIADTRSEFSTAKSYMQGFLARFTSENPVIVPQMIYGSIDGRSGSIKIGEKIIGVIGEIHPAFLERFSLAVPVSFFEIDLDEIFIANMDHLGL

Annotated regions:
phrase: FDFRIMRPARRSIERYLGEKMDSEETITHLRRMGYVAEPGYPEIAVYVPGYRVDVMGEADIIEDILKSKGIENIE
type: DOMAIN
name: tRNA_synthase_B5-dom
description: tRNA synthetase, B5-domain

phrase: FRIMRPARRSIERYLGEKMDSEETITHLRRMGYVAEPGYPEIAVYVPGYRVDVMGEADIIEDILKSKG
type: DOMAIN
name: tRNA_synthase_B5-dom
description: tRNA synthetase, B5-domain

phrase: SIERYLGEKMDSEETITHLRRMGYVAEPGYPEIAVYVPGYRVDVMGEADIIEDILKSK
type: DOMAIN
name: tRNA_synthase_B5-dom
description: tRNA synthetase, B5-domain

phrase: NKVKDLARDTMIGLGFQEVMTFVLSPASYLQEYTGGVRIQNPKSEDYSVIRDKIYPDLLDLIARNKKHSLPQRIFEIGDKIVGGKQRTALSCVIADTRSEFSTAKSYMQGFLARFTSENPVIVPQMIYGSIDGRSGSIKIGEKIIGVIGEIHPAFLERFSLAVPVSFFEID
type: DOMAIN
name: PheRS_beta_core
description: Phenylalanyl tRNA synthetase beta chain, core domain

phrase: IRPYFSALIAEGSSIGVHFDELINYQEILHASIGKDRSKMAIGIHDLEKTGDSIHYTTVSRNQRMQTYDGMEGTVDWIIKNHEKGIAYGRLLPGTGRSVAITDNEGNILSLPPIVNSYRSRIDEGTKKFFVDITGTDLNSVKFAHHLMSNFFSSLK
type: DOMAIN
name: B3/B4_tRNA-bd
description: B3/B4 tRNA-binding domain

phrase: FMNKVKDLARDTMIGLGFQEVMTFVLSPASYLQEYTGGVRIQNPKSEDYSVIRDKIYPDLLDLIARNKKHSLPQRIFEIGDKIVGGKQRTALSCVIADTRSEFSTAKSYMQGFLARFTSENPVIVPQMIYGSIDGRSGSIKIGEKIIGVIGEIHPAFLERFSLAVPVSFFEIDLDE
type: DOMAIN
name: PheRS_beta_core
description: Phenylalanyl tRNA synthetase beta chain, core domain
Protein sequence:
CIKNGNGCQPNGSQGNCCSGYCHKQPGWVAGYCRRK

Annotated regions:
phrase: CIKNGNGCQPNGSQGNCCSGYCHKQPGWVAGY
type: CONSERVED_SITE
name: Antimicrobial_C6_CS
description: Antimicrobial peptide, C6 type, conserved site
Protein sequence:
MADFVSTSPFGPVLTAMVTPFNADGGVDYGVAEKLADHLITHGSDGLVVCGTTGESPTLSWEEEHELFRVVKQTVGDRGSVIAGTGSNCTREAMEATQIAAKLGVDGSLQVVPYYNKPPQEGLLAHFQAIANCAPELPLMLYNIPGRTGQSLAPETVYRLAEVENIVAIKEATGSLEQASLIRAHTPDDFAIYAGDDVLTLPLLAVGGAGVVSVASHLVGDRLQAMVQHFAQGATAQALEIHLQLIPLFKILFCATNPIPVKTALGLQGWPVGSFRPPLCALSPGHTEQLRDVLRDLALLP

Annotated regions:
phrase: YNIPGRTGQSLAPETVYRLAEVENIVAIKE
type: ACTIVE_SITE
name: Schiff_base-form_aldolases_AS
description: Schiff base-forming aldolase, active site

phrase: GLVVCGTTGESPTLSWE
type: CONSERVED_SITE
name: Schiff_base-form_aldolases_CS
description: Schiff base-forming aldolase, conserved site
Protein sequence:
MLSVLGLPPHISAMELLLASAVFCLVFWVVRASRPQVPKGLKSPPGPWGWPLIGHVLTLGKSPHLALARLSQRYGDVLQIRLGSTPVLVLSGLDTIRQALVRQGDDFKGRPDFYTFTFISGGQSMTFSPDSGPVWAARRRLAQNALKAFSIASNPASSSSCYLEEHVSKEAEYLISKFQELMAGAGHFDPYRYVVVSVANVICAICFGRRYDHDNQELLSIVNLNNEFGEKFYGFMQKMVKEHYKTFEKGHIKDITDSLIEHCQDKKLDENANIQLSDEKIINVVSDIFGAGFDTVTTAISWSLMYLVMNPRIQRKIQEELDAVIGRARRPRLSDRSQLPYLEAFILETFRHSSFIPFTIPHCTTRDTSLNGFYIPKGHCVFVNQWQINHDQKLWGDPFEFRPERFLTPDGIINKALSEKVILFGLGKRKCIGETIGRLEVFLFLATLLQQVEFSVLPGMKVDMTPIYGLSMRYARCEYFQVHMRS

Annotated regions:
phrase: FGLGKRKCI
type: CONSERVED_SITE
name: Cyt_P450_CS
description: Cytochrome P450, conserved site
Protein sequence:
MPAQEGPPPYCFSTPLRRGVLRSRYRRFFAEVELENGQPVTAHCPNTGPMTGVCQVGAPVYLSYHPDPKRKLAYTWEMIQVEGVWVGINTGLPNRLVEWGLARGWFPQLAEFSRWQREVTCGRSKIDFLLMGDSGLAYLEVKNTTWAVGSRALFPDTVTTRGQKHLEDLIEIRRQGQRALLLYWINRADCTEFAPGEERDPRYAHLFRQALQAGVEVLPYRIAVSPQGIRPLGLAKIVA

Annotated regions:
phrase: RYRRFFAEVELENGQPVTAHCPNTGPMTGVCQVGAPVYLSYHPDPKRKLAYTWEMIQVEGVWVG
type: DOMAIN
name: SfsA_N
description: SfsA, N-terminal OB domain

phrase: LPNRLVEWGLARGWFPQLAEFSRWQREVTCGRSKIDFLLMGDSGLAYLEVKNTTWAVGSRALFPDTVTTRGQKHLEDLIEIRRQGQRALLLYWINRADCTEFAPGEERDPRYAHLFRQALQAGVEVLPYRIAVSP
type: DOMAIN
name: SfsA_C
description: Sugar fermentation stimulation protein, C-terminal
Protein sequence:
MKRFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFVGRLAAMKRARPDMIVGVGGCLAQEEGRQLLDAFPCVDIVFGTHALGRLPGHIQAVAHQGDRIVDVEMTAAIDESVHALQGPDSSGVTGFITIMRGCDNFCTYCVVPYVRGRETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGLCSFADLLARVNEIDGLHRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLHWLREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDGKVDEAEKQQRIYALLELQNRITAEKNRALEGRVEQVLVEGKSKSSGRNDITADTVQWTGRTTCNRVANFTVPRELASGNAVGPGAMVRVEIMSGLAHSLSGIAVGVEKPGAGGDAHAA

Annotated regions:
phrase: DSSGVTGFITIMRGCDNFCTYCVVPYVRGRETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGLCSFADLLARVNEIDGLHRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLHWLREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDGKVDEAEKQQRIYALLELQNRITA
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: MKRFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFVGRLAAMKRARPDMIVGVGGCLAQEEGRQLLDAFPCVDIVFGTHALGRLPGHIQAVAHQGDRIVDVEMTAAIDESVHALQGPDSSGVTGFITIMRGCDNFCTYCVVPYVRGRETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGLCSFADLLARVNEIDGLHRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLHWLREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDGKVDEAEKQQRIYALLELQNRITAEKNRALEGRVEQVLVEGKSKSSGRNDITADTVQWTGRTTCNRVANFTVPRELASGNAVGPGAMVRVEIMSGLAHSLSGIA
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: ITIMRGCDNFCTYCVVPYVR
type: CONSERVED_SITE
name: Methylthiotransferase_CS
description: Methylthiotransferase, conserved site

phrase: RFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFVGRLAAMKRARPDMIVGVGGCLAQEEGRQLLDAFPCVDIVF
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: VTGFITIMRGCDNFCTYCVVPYVRGRETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGLCSFADLLARVNEIDGLHRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLHWLREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDGKVDEAEKQQRIYALL
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: ITIMRGCDNFCTYCVVPYVRGRETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGLCSFADLLARVNEIDGLHRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLHWLREAQPGMALSTDIIVGFPGETEQDFLQTLDL
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: KRFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFVGRLAAMKRARPDMIVGVGGCLAQEEGRQLLDAFPCVDIVFGTHALGRLPGHIQAVA
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal
Protein sequence:
MSPKTETKASVGFKAGVKDYRLTYYTPEYQTKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEAVPGEESQFIAYVAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEALYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQRNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDVTLGFVDLLRDDFIEKDRSRGIYFTQDWVSMPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEVIREATKWSPELAAACEVWKEIKFEFDTIDYL

Annotated regions:
phrase: YYTPEYQTKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEAVPGEESQFIAYVAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPA
type: DOMAIN
name: RuBisCO_lsu_fd_N
description: Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal

phrase: GIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEALYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQRNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDVTLGFVDLLRDDFIEKDRSRGIYFTQDWVSMPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEVIREATKWSPELAAACEV
type: DOMAIN
name: RuBisCO_lsu_C
description: Ribulose bisphosphate carboxylase, large subunit, C-terminal

phrase: GLDFTKDD
type: ACTIVE_SITE
name: RuBisCo_large_chain_AS
description: Ribulose bisphosphate carboxylase, large chain, active site
Protein sequence:
MAARMCCQLDPSQDVLCLRPVGAESRGRPFSGPLGPLSPPSPSLVPADHGAHLSLRGLPVCAFSSAGPCALRFTSARCMATTVNAPRSLPTVLHKRTLGLPAMSTTGIETYFKDCVFKDWEESGEETRLKVFVLGGCRHKLVCSPAPCNFFTSA

Annotated regions:
Protein sequence:
MASTPNSVTLYTDGACSMNPGPGGYGAVILYGDGRREELSAGYKMTTNNRMEIMGAIAALSHLQEPSQVLLYTDSRYMVDAMSKGWAKKWKANGWQRNAKEKAKNPDLWETMLTLCEKHQVTFQWVKAHAGNKENERCDRLAVAAYQNNPNLVDEGFGKF

Annotated regions:
phrase: TPNSVTLYTDGACSMNPGPGGYGAVILYGDGRREELSAGYKMTTNNRMEIMGAIAALSHLQEPSQVLLYTDSRYMVDAMSKGWAKKWKANGWQRNAKEKAKNPDLWETMLTLCEKHQVTFQWVKAHAGNKENERCDRLAVAAY
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: NSVTLYTDGACSMNPGPGGYGAVILYGDGRREELSAGYKMTTNNRMEIMGAIAALSHLQEPSQVLLYTDSRYMVDAMSKGWAKKWKANGWQRNAKEKAKNPDLWETMLTLCEKHQVTFQWVKAHAGNKENERCDRLAVA
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain
Protein sequence:
MKVLLGLLLGYSVLILAHELPDLPRTQHPPKSELSYWCTYVPQCDFCWDCQDGICKNKITESRFIDSNHSIVNCRVFRDSKTQSCLYEISSKMPNHFNMECLHPRPYTGNEIFMRTWGGGDHQQLSIKQFCLYFIIGIAYTGCFVCALCKNLRLRTTMKLFILLSILVWLAQPVLNRPLSIFYTKQILPRTYTPPMRELEYWCTYGKHCDFCWDCKNGICKNKVLDDMPLIVQNDYISKCSITRFIDRCMYFIEPKIPYIHYMNCSLPTYFS

Annotated regions:
Protein sequence:
MRKMLLFCILLLFMPQFTVSESCLPSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSSTSTPETPTETTISEAGDDEKRTEEVAKELIEKEAEYEGEYEDEKVDEEVEEALKYNEDATQDATSTLKPAVRKEIEKLKEAKCKDYCHHNATCHVEVIFREDRVSAVVPSCHCPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLLVQQSSTSAIPAFAFLIVMLIMFITIVVYAYRRMSKRSDDMTYTMSHMCPPEAFNVLKTPNGRHIPVHQIPSCSYTIPTPGTVPPNISSTPGSRIPTRQQAIRNNEQARNNFFSILRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCPPPAHTVINIELDSADTNFRSPSRSSGEQGSPATCEPMIRHT

Annotated regions:
phrase: CHCPQGWEGTR
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: KCKDYCHHNATCHVEVIFREDRVSAVVPSCHCPQGWEGTRC
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: KEAKCKDYCHHNATCHVEVIFREDRVSAVVPSCHCPQGWEGTRC
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: CHCPQGWEGTR
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain
Protein sequence:
MSDIETPDPRAIVLDTVAKLPNLPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQKFPRMAYYRGAVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSAPCVNYISQEDYALDVDNAAKFLRGRQTEVLEVLQAKMLAYAEELKFEQAALVRNQINALSRVLHQQSMDTGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNVLTNAEESVAAEVMKAFLAQHYIDKFIPGTLILNTEIDEPELMLALMQQCGHRINLIFQPQGPRRQWLEMAQKGAEISLARLLSEQGSQQTRTRMLVDALKIDVEDIEAFRVECFDISHTQGEATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLMRRYEKVANGDGVMPDVVLIDGGKGQVEMARQVFVELGLDISLIVGVAKGEGRKVGLETLVFVDGRAPQELGKESGALMLIAQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASVEDLSSVEGISRQLAEDIYKQLH

Annotated regions:
phrase: EDLSSVEGISRQLAEDIYK
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: SRLEEIEGIGAKRRQKLLA
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: LPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITRSEAEALLLENNLIKTLQPRYNILFR
type: DOMAIN
name: GIY-YIG_endonuc
description: GIY-YIG endonuclease

phrase: NLPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITRSEAEALLLENNLIKTLQPRYN
type: DOMAIN
name: GIY-YIG_endonuc
description: GIY-YIG endonuclease

phrase: TEVLEVLQAKMLAYAEELKFEQAALVRNQINALSR
type: DOMAIN
name: UVR_dom
description: UVR domain

phrase: FRVECFDISHTQGEATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLMRRYEKVANGDGVMPDVVLIDGGKGQVEMARQVFVELGLDISLIVGVAKGEGRKVGLETLVFVDGRAPQELGKESGALMLIAQIRDEAHRFA
type: DOMAIN
name: UvrC_RNase_H_dom
description: UvrC, RNAse H endonuclease domain

phrase: IIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNVLTNAEESVAAEVMKAFLAQHYIDKFIPGTLILNTEIDEPELMLALMQQCGHRINLIFQPQGPRRQWLEMAQKGAEISLARLLSEQGSQQTRTRMLVDALKIDVEDIEAFRVECFDISHTQGEATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLMRRYEKVANGDGVMPDVVLIDGGKGQVEMARQV
type: DOMAIN
name: UvrC_RNase_H_dom
description: UvrC, RNAse H endonuclease domain

phrase: EVLEVLQAKMLAYAEELKFEQAALVRNQINAL
type: DOMAIN
name: UVR_dom
description: UVR domain

phrase: LPNLPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITRSEAEALLLENNLIKTLQPRYN
type: DOMAIN
name: GIY-YIG_UvrC_Cho
description: UvrC/Cho-like, GIY-YIG domain

phrase: GVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITRSEAEALLLENNLIKTLQPRY
type: DOMAIN
name: GIY-YIG_endonuc
description: GIY-YIG endonuclease
Protein sequence:
MLNKCFIKNYNYNIQLVRYIESKHSNTFQIIKDYMDTLVYSVKSKFDDYDIALLTMLFETKRMSQNTKVKRVYLYNSYSFIHQNYITALLKEAFKGVIEIVEKDTLNLTYEGLQKKNVDIIISNVKLEIKDIPVVQISDMPTDKELSKIKKLL

Annotated regions:
Protein sequence:
MNNLFRSIPAVDLCLTALGQADPSLVEAPRGLMRDLITEFWDKKRHEIREGHCKKNEQLTLDACLPGLMTHVRAGLRSRFRAALNATGVVVHTNMGRSVLAKEAREAVITAATGYCNLELDMQSGGRGSRHALVEDLLCRLTGAEAALVVNNNAAAVLLVLDTFCKGGEVVVSRGELVEIGGSFRIPEVMEKSGATLREVGATNRTHLHDYSAAINENTRALMRVHTSNYRIVGFHSAVPLPELAALARRHDLPLIEDLGSGSLTDFSSCGLPDEPTVPSVLAQGADIATFSGDKVLGGPQAGIITGRKDMVDTLKRNPLTRALRCDKLCLAGLEATLRLYLDPEKARQKIPTLRMICRPAEELARAARTLAAALRKGLAGSSASCLVSLRADVSRVGGGAFPQYDLPTTLVCLKPENCSATALKAALLRTDPPLIGRLEDDSFCLDPRTLSAEDRPTLLRVLREALALAAKEII

Annotated regions:
Protein sequence:
MSQPWQPTASIKQLKQRAAVLSSIRDFFAGKEVIEVDTPAMSQATVTDVHLHTFQTEFVGPGYAGGQTLYMMTSPEFHMKRLLSAGSGPIYQICKSFRNEESGRYHNPEFTMLEWYRPDFDHHDLMNEMDELLQLVLQCDKAERMSYQQAFIQELGVCPLEGTMEQLKGVARTLGLADIADPEQDRDTLLQLLFSMGVENKIGQQVPAFVYDFPASQAALAQINPTDNRVAERFEVYFKGIELANGFHELANGDEQLVRFEQDNMKRISMGLKPQPIDLHLIEALRAGFPDCAGVALGIDRLIMLALKLDHIDQVTAFPIDIA

Annotated regions:
phrase: LKQRAAVLSSIRDFFAGKEVIEVDTPAMSQATVTDVHLHTFQTEFVGPGYAGGQTLYMMTSPEFHMKRLLSAGSGPIYQICKSFRNEESGRYHNPEFTMLEWYRPDFDHHDLMNEMDELLQLVLQCDKAERMSYQQAFIQELGVCPLEGTMEQLKGVARTLGLADIADPEQDRDTLLQLLFSMGVENKIGQQVPAFVYDFPASQAALAQINPTDNRVAERFEVYFKGIELANGFHELANGDEQLVRFEQDNMKRISMGLKPQPIDLHLIEALRAGFPDCAGVALGIDRLIMLALKLDHIDQVTAF
type: DOMAIN
name: aa-tRNA-synth_II
description: Aminoacyl-tRNA synthetase, class II

phrase: KQLKQRAAVLSSIRDFFAGKEVIEVDTPAMSQATVTDVHLHTFQTEFVGPGYAGGQTLYMMTSPEFHMKRLLSAGSGPIYQICKSFRNEESGRYHNPEFTMLEWYRPDFDHHDLMNEMDELLQLVLQCDKAERMSYQQAFIQELGVCPLEGTMEQLKGVARTLGLADIADPEQDRDTLLQLLFSMGVENKIGQQVPAFVYDFPASQAALAQINPTDNRVAERFEVYFKGIELANGFHELANGDEQLVRFEQDNMKRISMGLKPQPIDLHLIEALRAGFPDCAGVALGIDRLIMLALKLDHIDQVTAFP
type: DOMAIN
name: Aa-tRNA-synt_II
description: Aminoacyl-tRNA synthetase, class II (D/K/N)
Protein sequence:
MEANREKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKFRGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKIQGIPAYIVVPKGAPKCKVDNVIRYGGKVIWSEATMSSREEIASKVLQETGSVLIHPYNDGRIISGQGTIALELLEQIQEIDAIVVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVVTLEECEIIEAMKMCYEILKVSVEPSGAIGLAAVLSNSFRNNPSCRDCKNIGIVLSGGNVDLGSLWDSFKSSK

Annotated regions:
phrase: ECLQKGGAFKFRG
type: BINDING_SITE
name: Ser/Thr_deHydtase_PyrdxlP-BS
description: Serine/threonine dehydratase, pyridoxal-phosphate-binding site

phrase: KPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKFRGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKIQGIPAYIVVPKGAPKCKVDNVIRYGGKVIWSEATMSSREEIASKVLQETGSVLIHPYNDGRIISGQGTIALELLEQIQEIDAIVVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVVTLEECEIIEAMKMCYEILKVSVEPSGAIGLAAVLSNSFRNNPSCRDCKNIGIVLS
type: DOMAIN
name: TrpB-like_PALP
description: Tryptophan synthase beta chain-like, PALP domain
Protein sequence:
MNLNELQPAAGSRKLRNRVGRGTSSGNGKTSGRGQKGQKARGKVRLGFEGGQMPLYRRIPKRGFTNISRKEFAVVNLEKLNTFADGTEVTPALLIENGIVKNQKSGIKVLAVGQLEKKLTVKAHKFSGAAKAAIEQAGGTTEVL

Annotated regions:
phrase: KVLAVGQLEKKLTVKAHKFSGAAKAAIEQA
type: CONSERVED_SITE
name: Ribosomal_uL15_CS
description: Large ribosomal subunit protein uL15, conserved site

phrase: VVNLEKLNTFADGTEVTPALLIENGIVKNQKSGIKVLAVGQLEKKLTVKAHKFSGAAKAAIEQAGGT
type: DOMAIN
name: Ribosomal_uL15/eL18
description: Large ribosomal subunit protein uL15/eL18
Protein sequence:
MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESQKILQRSQAQQPQKEAALSS

Annotated regions:
phrase: SLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRK
type: DOMAIN
name: LSM12_ABD
description: LSM12, anticodon-binding domain

phrase: PLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRK
type: DOMAIN
name: LSM12_ABD
description: LSM12, anticodon-binding domain

phrase: EYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVS
type: DOMAIN
name: LSM12_LSM
description: LSM12, LSM domain

phrase: AAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIIND
type: DOMAIN
name: Sm
description: Sm domain

phrase: ASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVEKHFRDV
type: DOMAIN
name: AD
description: AD domain
Protein sequence:
MSSTLDSQHDLVAEKQSARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNQEEATRIMLQVHHEGRGICGVYVRDVAATRIAQVAQYARARQHPLQCIMEPV

Annotated regions:
phrase: PPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNQEEATRIMLQVHHEGRGICGVYVRDVAATRIAQVAQYARARQHPLQ
type: DOMAIN
name: ClpS_core
description: Adaptor protein ClpS, core
Protein sequence:
MKESILAVLLYLFEYYFSENADLVRDRDSLQNGLIQVGFSPAEINKAFEWLDALAANRPTLTHPRVNGPVRVFHGPELDKLDVESRGFLLFLEQQGILNTEQRELVLDRAMALDQEELDLDDMKWVVLMVLFNQPGAEAAYAWMETQMFGNEPEPLH

Annotated regions: