nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MITEEKKKKNKFLPNFEKQSIYSIRYDEMQDWLIQNGQQKFRAKQIFEWLYEKRVDSIDEMLNLSKELREVLKESFTMTTMMTVVKQESRDGTIKFLFELQDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDESEERVSQIVIMGIGEPFENYDEMMDFLKIVNNDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHGANDEIRSRLMPINRAYNVEKLMEAINYYQETTNRRITFEYGLFGGVNDQLEHARELAHLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAACGQLRAKERKVETR

Annotated regions:
phrase: IRYDEMQDWLIQNGQQKFRAKQIFEWLYEKRVDSIDEMLNLSKELREVLKES
type: DOMAIN
name: RlmN_N
description: Dual-specificity RNA methyltransferase RlmN, N-terminal domain

phrase: HEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDESEERVSQIVIMGIGEPFENYDEMMDFLKIVNNDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHGANDEIRSRLMPINRAYNVEKLMEAINYYQETTNRRITFEYGLFGGVNDQLEHARELAHLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGA
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: EKQSIYSIRYDEMQDWLIQNGQQKFRAKQIFEWLYEKRVDSIDEMLNLSKELREVLKESFTMTTMMTVVKQESRDGTIKFLFELQDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDESEERVSQIVIMGIGEPFENYDEMMDFLKIVNNDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHGANDEIRSRLMPINRAYNVEKLMEAINYYQETTNRRITFEYGLFGGVNDQLEHARELAHLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAACGQLRAKERKV
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: TTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDESEERVSQIVIMGIGEPFENYDEMMDFLKIVNNDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHGANDEIRSRLMPINRAYNVEKLMEAINYYQETTNRRITFEYGLFGGVNDQLEHARE
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MVEFRAYQEEARYFKYAFNAAGKVVEEAPLIVTENGIVSRAMDASHIAMAVLEMPWEMFDEYEPPSDELMYGLDMEEVTRIVRRARVTDEITLEGEDEEEVIIKLGSSGYEREFRLRSIDIDDIPDEPELDFAVEVTVVPDFIQDAVRDADLVSDTVKVGAKGNTFYFKAEGERGRVIPKVQEGAEALLTFEVEEDVETAYPLDYLKDMIQAAQGAESVRIRLGQDMPLELTFRIGPAGEGKLTFYLAPRVEE

Annotated regions:
phrase: YQEEARYFKYAFNAAGKVVEEAPLIVTENGIVSRAMDASHIAMAVLEMPWEMFDEYEPPSDELMYGLDMEEVTRIVRRARVTDEITLEGEDEEEVIIK
type: DOMAIN
name: Pr_cel_nuc_antig_N
description: Proliferating cell nuclear antigen, PCNA, N-terminal

phrase: GIVSRAMDASHIAMAVLEMPWEM
type: CONSERVED_SITE
name: Pr_cel_nuc_antig_CS
description: Proliferating cell nuclear antigen, PCNA, conserved site

phrase: PELDFAVEVTVVPDFIQDAVRDADLVSDTVKVGAKGNTFYFKAEGERGRVIPKVQEGAEALLTFEVEEDVETAYPLDYLKDMIQAAQGAESVRIRLGQDMPLELTFRIGPAGEGKLTFYLA
type: DOMAIN
name: Pr_cel_nuc_antig_C
description: Proliferating cell nuclear antigen, PCNA, C-terminal
Protein sequence:
MVSSSATAPRSGFYYFSQGWKLVTQPGIRRFVILPLLVNILLMGGAFWWLFTQLDVWIPSLMSHVPDWLQWLSYLLWPIAVISVLLVFGYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGVLGIMKDVPRIMKREWQKFIWYLPRAIVLLILYFIPGVGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTQKVANMQFGALTSLFTMIPVLNLVIMPVAVCGATAMWVDCYRSKHALWK

Annotated regions:
Protein sequence:
MLAVIRIRGRTGIKQDIEDTAHLLRLNRINHLVLLQEDAVTKGMLQKVKDYVTWGEIDVDTLEVLLKNRCLFKGRRKLTEEELKDVTGFGSYRDLAKALVDGKIKFSEINDVVPVIRLNPPYKGYEAIKTSYRNGGSAGYRGKDINNLIRRMIIPGVDLNGQREN

Annotated regions:
phrase: MLAVIRIRGRTGIKQDIEDTAHLLRLNRINHLVLLQEDAVTKGMLQKVKDYVTWGEIDVDTLEVLLKNRCLFKGRRKLTEEELKDVTGFGSYRDLAKALVDGKIKFSEINDVVPVIRLNPPYKGYEAIKTSYRNGGSAGYRGKDINNLIRRM
type: DOMAIN
name: Ribosomal_uL30_euk_arc
description: Large ribosomal subunit protein uL30, eukaryotic/archaeal

phrase: LAVIRIRGRTGIKQDIEDTAHLLRLNRINHLVLLQEDAVTKGMLQKVKDY
type: DOMAIN
name: Ribosomal_uL30_ferredoxin-like
description: Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
Protein sequence:
MELADKRILLGISGGIAAYKSAELVRRLKDQGADVRVVMTRSAKEFITPLTLQAVSGHPVADSLLDPAAEAGMGHIELAKWADLVLIAPASANLMARMAAGMGDELLTTLCLATPAPVALAPAMNQQMYRNPATQANLATLASRGILLWGPDSGSQACGDVGPGRMLDPLELVQRCALQLQGPQPLAGLHLLLTAGPTREALDPVRFISNHSSGKMGFALARAAAEMGARVTLVSGPVNLPTPTGVTRIDVESAQQMHDAVHAAVADSQIFIGCAAVADYRAAAISPQKIKKTADNEELVLTLVKNPDIIASVGALPNKPFTVGFAAETVDVEQYALGKLQRKRLDMIAANDVSRAGQGFNSDDNALTVFWPGGSQELPLADKLSIARHLLTLVVEHYQCDHRGRP

Annotated regions:
phrase: KRILLGISGGIAAYKSAELVRRLKDQGADVRVVMTRSAKEFITPLTLQAVSGHPVADSLLDPAAEAGMGHIELAKWADLVLIAPASANLMARMAAGMGDELLTTLCLATPAPVALAPAMNQQMYRNPATQANLATLASRGILLWGPDSGSQACGDVGPGRMLDPLELVQRC
type: DOMAIN
name: Flavoprotein
description: Flavoprotein

phrase: LAGLHLLLTAGPTREALDPVRFISNHSSGKMGFALARAAAEMGARVTLVSGPVNLPTPTGVTRIDVESAQQMHDAVHAAVADSQIFIGCAAVADYRAAAISPQKIKKTADNEELVLTLVKNPDIIASVGALPNKPFTVGFAAETVDVEQYALGKLQRKRLDMIAANDVSRAGQGFNSDDNALT
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal
Protein sequence:
MNTFGDNFRVTTWGESHGKALGAVIDGCPANLPILEEDIQNELNRRRPGYSIFSTPRKEEDMLEILSGIFEGKTTGTPISGLVFNKGQKSKDYSKIKDTPRPGHADLNYFLKYGNYDYRGGGRSSGRTTIGNVIGGAVAKKLIEFTHNIKIIGYSTKIGKINGDFDYYKNPEFFESDSNIEKLFEKTENNPLRCPSKNSDEMKDYVLDAMDKKDSVGGIIEIIIKGIPQGVGNPVFNKLEGKLGSAFIGINAVKGFEIGRGFESSDLYGSEMNDEYYIDENSINEKTNNAGGIIGGISTGSPVVLRVSIKPTPSISKIQDSVNLISNENEKIEIGGRHDPIIVPRVIPVLESMAAITVADLMISGGYINPCRL

Annotated regions:
phrase: GRSSGRTTIGNVIGGA
type: CONSERVED_SITE
name: Chorismate_synthase_CS
description: Chorismate synthase, conserved site

phrase: GESHGKALGAVIDGC
type: CONSERVED_SITE
name: Chorismate_synthase_CS
description: Chorismate synthase, conserved site
Protein sequence:
MKFHIITLGCPKNQVDSEGMSSILAAQGHTPVAHADDADVVVVNTCSFIAAAREETLDVLREVAARKTPGQYLVAAGCMAESHSALVAAAPGVDALLSTREWMRIGDVVDTLQREPAVAASSAAREIIPLSSAPASSDDLRVPGAYADWRTAPIRRRITGPSAYLKISDGCNLRCAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLTDYGRDLGLKDGLALLLDELCAVLPKDRWVRLMYAYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRMHRPPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTAFLEEVQFDRVGVFRYSREPGTPAAALPDQIPQRVIERRWHTIMRLQQGISRQRNRRWVGRVIRVLVEGQGQTDDGRLLSVGRSFRDAPEVDGQVLFWGTAATGTFVDVRVTQALDYDLWGEMVEAPADDARSENGT

Annotated regions:
phrase: PSAYLKISDGCNLRCAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLTDYGRDLGLKDGLALLLDELCAVLPKDRWVRLMYAYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRMHRPPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTAFLEEVQFDRVGVFRYSREPGTPAAALPDQIPQRVIERRWHTIM
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: VGRVIRVLVEGQGQTDDGRLLSVGRSFRDAPEVDGQVLFWGTAATGTFVDVRVTQALDYDLWGEM
type: DOMAIN
name: TRAM_dom
description: TRAM domain

phrase: LKISDGCNLRCAFCTIPSFK
type: CONSERVED_SITE
name: Methylthiotransferase_CS
description: Methylthiotransferase, conserved site

phrase: RRWVGRVIRVLVEGQGQTDDGRLLSVGRSFRDAPEVDGQVLFWGTAATGTFVDVRVTQALDYDLWGEMV
type: DOMAIN
name: TRAM_dom
description: TRAM domain

phrase: KFHIITLGCPKNQVDSEGMSSILAAQGHTPVAHADDADVVVVNTCSFIAAAREETLDVLREVAARKTPGQYLVAAGCMAESHSALVAAAPGVDA
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: ISDGCNLRCAF
type: CONSERVED_SITE
name: MoaA_NifB_PqqE_Fe-S-bd_CS
description: MoaA/NifB/PqqE, iron-sulphur binding, conserved site

phrase: MKFHIITLGCPKNQVDSEGMSSILAAQGHTPVAHADDADVVVVNTCSFIAAAREETLDVLREVAARKTPGQYLVAAGCMAESHSALVAAAPGVDALLSTREWMRIGDVVDTLQ
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: KISDGCNLRCAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLTDYGRDLGLKDGLALLLDELCAVLPKDRWVRLMYAYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRMHRPPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTA
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: RITGPSAYLKISDGCNLRCAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLTDYGRDLGLKDGLALLLDELCAVLPKDRWVRLMYAYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRMHRPPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTAFLEEVQFDRVGVFRYSREPGTPAAALPDQIPQRVIERRWHTIMRLQQGISR
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MPMHIPFPFNWIPTLPVARCQESPSLLKRAGTEKLREVFLKYASIQKNGEHYMTSEDFVRKFLGLFSESAFNDESVRLLANIADTSKDGLISFSEFQAFEGLLCTPDALYRTAFQLFDRKGNGTVSYADFADVVQKTELHSKIPFSLDGPFIKRYFGDKKQRLINYAEFTQLLHDFHEEHAMEAFRSKDPAGTGFISPLDFQDIIVNVKRHLLTPGVRDNLVSVTEGHKVSFPYFIAFTSLLNNMELIKQVYLHATEGSRTDMITKDQILLAAQTMSQITPLEIDILFHLAGAVHQAGRIDYSDLSNIAPEHYTKHMTHRLAEIKAVESPADRSAFIQVLESSYRFTLGSFAGAVGATVVYPIDLVKTRMQNQRAGSYIGEVAYRNSWDCFKKVVRHEGFMGLYRGLLPQLMGVAPEKAIKLTVNDLVRDKLTDKKGNIPTWAEVLAGGCAGASQVVFTNPLEIVKIRLQVAGEIASGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIYFPTYAHTKAMMADKDGYNHPLTLLAAGAIAGVPAASLVTPADVIKTRLQVVARSGQTTYTGVWDATKKIMAEEGPRAFWKGTAARVFRSSPQFGVTLVTYELLQRLFYVDFGGTQPKGSEAHKITTPLEQAAASVTTENVDHIGGYRAAVPLLAGVESKFGLYLPRFGRGVTAASPSTATGS

Annotated regions:
phrase: TPDALYRTAFQLFDRKGNGTVSYADFADVVQKTEL
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: IPTWAEVLAGGCAGASQVVFTNPLEIVKIRLQVAGEIASGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIYFPTYAHTKA
type: REPEAT
name: Mitochondrial_sb/sol_carrier
description: Mitochondrial substrate/solute carrier

phrase: DALYRTAFQLFDRKGNGTVSYADFADVVQ
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: NHPLTLLAAGAIAGVPAASLVTPADVIKTRLQVVARSGQTTYTGVWDATKKIMAEEGPRAFWKGTAARVFRSSPQFGVTLVTYELLQR
type: REPEAT
name: Mitochondrial_sb/sol_carrier
description: Mitochondrial substrate/solute carrier

phrase: PLTLLAAGAIAGVPAASLVTPADVIKTRLQVVARSGQTTYTGVWDATKKIMAEEGPRAFWKGTAARVFRSSPQFGVTLVTYELLQRLF
type: REPEAT
name: Mitochondrial_sb/sol_carrier
description: Mitochondrial substrate/solute carrier

phrase: IPTWAEVLAGGCAGASQVVFTNPLEIVKIRLQVAGEIASGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIYFPTYAHTKAMMAD
type: REPEAT
name: Mitochondrial_sb/sol_carrier
description: Mitochondrial substrate/solute carrier

phrase: SYRFTLGSFAGAVGATVVYPIDLVKTRMQNQRAGSYIGEVAYRNSWDCFKKVVRHEGFMGLYRGLLPQLMGVAPEKAIKLTVNDLVRDKLTD
type: REPEAT
name: Mitochondrial_sb/sol_carrier
description: Mitochondrial substrate/solute carrier

phrase: LESSYRFTLGSFAGAVGATVVYPIDLVKTRMQNQRAGSYIGEVAYRNSWDCFKKVVRHEGFMGLYRGLLPQLMGVAPEKAIKLTVNDLVRD
type: REPEAT
name: Mitochondrial_sb/sol_carrier
description: Mitochondrial substrate/solute carrier

phrase: HAMEAFRSKDPAGTGFISPLDFQDIIVN
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: LYRTAFQLFDRKGNGTVSYADFADVVQK
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: SVRLLANIADTSKDGLISFSEFQAFEGL
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: IADTSKDGLISFSEFQA
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: FHEEHAMEAFRSKDPAGTGFISPLDFQDIIVNVKR
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain
Protein sequence:
MTKREQSLATPYLQFDRTQWAALRDSVPLTLTEEEIVKLKGINEDLSLDEVAQIYLPLSRLLNFYISSNLRRQAVLEQFLGTDGQRIPYVIGIAGSVAVGKSTTARLLQALLSRWPEHRSVELITTDGFLHPNKVLNERGLMKKKGFPESYDMHNLVKFVSEVKSGADYVTAPVYSHLIYDVVPDGNKVIKQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQSWYINRFLKFRQGAFSNPDSYFHNYAKLPETEAIKIATQLWNEINGLNLKQNILPTRERASLIMTKSANHAVESVRLRK

Annotated regions:
phrase: VIGIAGSVAVGKSTTARLLQALLSRWPEHRSVELITTDGFLHPNKVLNERGLMKKKGFPESYDMHNLVKFVSEVKSGADYVTAPVYSHLIYDVVPDGNKVIKQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQSWYINR
type: DOMAIN
name: PRK/URK
description: Phosphoribulokinase/uridine kinase
Protein sequence:
TKCYITPDVKSETCPDGENICYTKSWCDVFCTSRGKRIDLGCAATCPKVKPGVDIKCCSTDNCNPFTPWKRH

Annotated regions:
phrase: GCAATCPKVKPGVDIKCCST
type: CONSERVED_SITE
name: Snake_toxin_con_site
description: Snake toxin, conserved site
Protein sequence:
MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIGLDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPIIRIYEGWEGLTDEENIDIDLTPFNSPSTRKHKGFVVEPCPILVDQIESYFVIKPANVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLFLNVNVKSLAYILRMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKKSKEQMEQLEQESIN

Annotated regions:
Protein sequence:
MAAAMGLERKAKVAEVALRCAVCALAALAAALVGTGSQTRTFFSLEKKARFTDMKALVLLVAAHGAAAVYSLLQLARCAAAAAWKGGSNGGAAVVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPVCGLYGAFCRRVGEGLAAAVAAGLAAVLLAAVSAFNLFRLYGGGGGGRKSSAGAVSGNGANTW

Annotated regions:
phrase: RKAKVAEVALRCAVCALAALAAALVGTGSQTRTFFSLEKKARFTDMKALVLLVAAHGAAAVYSLLQLARCAAAAAWKGGSNGGAAVVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPVCGLYGAFCRRVGEGLAAAVAA
type: DOMAIN
name: CASP_dom
description: Casparian strip membrane protein domain
Protein sequence:
MIYGIGTDIIQIARVQGVMTRTNGRFAEKVLGPDELAKYHARKARSEKRGLAFLATRFAAKEAFSKAIGLGMRWPMTWRAMELMNLPSGEPTAVCHGELAAWLAERGLVVRVSVSDEHDYAVAFAIAERSGAAVSQPTAL

Annotated regions:
phrase: MIYGIGTDIIQIARVQGVMTRTNGRFAEKVLGPDELAKYHARKARSEKRGLAFLATRFAAKEAFSKAIGLGMRWPMTWRAMELMNLPSGEPTAVCHGELAAWLAERGLVVRVSVSDEHDYAVAFAIAE
type: DOMAIN
name: Ppantetheine-prot_Trfase_dom
description: Phosphopantetheine-protein transferase domain

phrase: GIGTDIIQIARVQGVMTRTNGRFAEKVLGPDELAKYHARKARSEKRGLAFLATRFAAKEAFSKAIGLGMRWPMTWRAMELMNLPSGEPTAVCHGELAAWLAERGLVVRVSVSDEHDYAVA
type: DOMAIN
name: 4-PPantetheinyl_Trfase_dom
description: 4'-phosphopantetheinyl transferase domain
Protein sequence:
MSDQATFEFDTDYFVEEFSHCFTGECRVKMLPILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEKKRGIYAVGEGITGKVVETGKAIVARRLQEHPDFLGRTRVSRNGKAKAAFFCVPIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYLIENIERVRLENENRRLKHALKERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERAVILSDDDVIHSYNLPPSLQTSKESGTAFGLTLEEKIKAVECEMIVEALKNSSGHIGEAAKELGLARRMLGVRMERYGISYKSFSRYA

Annotated regions:
phrase: IIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERAV
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: GCFEQADGGTIFLDE
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_2
description: Sigma-54 interaction domain, ATP-binding site 2

phrase: TKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNV
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: DLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEKKRGIYAVGEGITGKVVETGKAIVARRLQEHPDFLGRTRVSRNGKAKAAFFCVPIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMI
type: DOMAIN
name: GAF
description: GAF domain

phrase: DLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEKKRGIYAVGEGITGKVVETGKAIVARRLQEHPDFLGRTRVSRNGKAKAAFFCVPIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYLIENIE
type: DOMAIN
name: GAF
description: GAF domain

phrase: IIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFP
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: KAVECEMIVEALKNSSGHIGEAAKELGLARRMLGVRMER
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type

phrase: EMIVEALKNSSGHIGEA
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type

phrase: AKELGLARRMLGVRMERYGI
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type

phrase: WPGNVRELE
type: CONSERVED_SITE
name: Sigma_54_int_dom_CS
description: Sigma-54 interaction domain, conserved site

phrase: VLILGESGVGKEL
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_1
description: Sigma-54 interaction domain, ATP-binding site 1
Protein sequence:
MQKIRRDDEIIVIAGKDKGKRGKVLKVLADDRLVVGGLNLVKRHTKPNPMSGVQGGIVEKEAPLHASNVAIFNSETNKADRVGFKVEDGKKIRVFKSTQKAVDA

Annotated regions:
phrase: DDEIIVIAGKDKGKRGKVLKVLADDRL
type: DOMAIN
name: KOW
description: KOW

phrase: DDEIIVIAGKDKGKRGKVLKVLADDRLVVGGLNLVKRHTKPNPMSGVQGGIVEKEAPLHASNVA
type: DOMAIN
name: Ribosomal_uL24_KOW
description: Large ribosomal subunit protein uL24, KOW domain

phrase: DDEIIVIAGKDKGKRGK
type: CONSERVED_SITE
name: Ribosomal_uL24_CS
description: Large ribosomal subunit protein uL24, conserved site

phrase: KIRRDDEIIVIAGKDKGKRGKVLKVLA
type: DOMAIN
name: KOW
description: KOW
Protein sequence:
MSLFPSLPLLLLSMVAASYSETVTCEDAQKTCPAVIACSSPGINGFPGKDGRDGTKGEKGEPGQGLRGLQGPPGKLGPPGNPGPSGSPGPKGQKGDPGKSPDGDSSLAASERKALQTEMARIKKWLTFSLGKQVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSHLAVCEFPI

Annotated regions:
phrase: NKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSHLAVCE
type: DOMAIN
name: Collectin_CTLD
description: Collectin, C-type lectin-like domain

phrase: VGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSHLAVC
type: DOMAIN
name: C-type_lectin-like
description: C-type lectin-like

phrase: TFSLGKQVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSHLAVC
type: DOMAIN
name: C-type_lectin-like
description: C-type lectin-like

phrase: CVLLLKNGQWNDVPCSTSHLAV
type: CONSERVED_SITE
name: C-type_lectin_CS
description: C-type lectin, conserved site

phrase: GINGFPGKDGRDGTKGEKGEPGQGLRGLQGPPGKLGPPGNPGPSGSPGPKGQKGDPG
type: REPEAT
name: Collagen
description: Collagen triple helix repeat

phrase: MTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSHLAVCE
type: DOMAIN
name: C-type_lectin-like
description: C-type lectin-like
Protein sequence:
MSAKKSPEEMKSIFQKYAAKEGDPNQLSKEELKLLIQSEFPSLLKASSTLDNLFKELDKNGDGEVSYEEFEVFFKKLSQ

Annotated regions:
phrase: DKNGDGEVSYEE
type: BINDING_SITE
name: EF_Hand_1_Ca_BS
description: EF-Hand 1, calcium-binding site

phrase: AKKSPEEMKSIFQKYAAKEGDPNQLSKEELKLLIQSEFPSLL
type: DOMAIN
name: S100_Ca-bd_sub
description: S100/CaBP-9k-type, calcium binding, subdomain

phrase: SIFQKYAAKEGDPNQLSKEELKLLIQSEFPSLLK
type: DOMAIN
name: S100_Ca-bd_sub
description: S100/CaBP-9k-type, calcium binding, subdomain

phrase: SIFQKYAAKEGDPNQLSKEELKLLIQSEFPSLLKASSTLDNLFKELDKNGDGEVSYEEFEVFFKKLS
type: DOMAIN
name: S-100_dom
description: S-100

phrase: KASSTLDNLFKELDKNGDGEVSYEEFEVFFKKLS
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: LDNLFKELDKNGDGEVSYEEFEVFFKK
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain

phrase: LFKELDKNGDGEVSYEEFEVF
type: CONSERVED_SITE
name: S100/CaBP7/8-like_CS
description: S100/Calcium binding protein 7/8-like, conserved site

phrase: TLDNLFKELDKNGDGEVSYEEFEVFFKK
type: DOMAIN
name: EF_hand_dom
description: EF-hand domain
Protein sequence:
MAKFKIRPATASDCSDILRLIKELAKYEYMEDQVILTEKDLQEDGFGEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCRCSSMHFLVAEWNEPSINFYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE

Annotated regions:
phrase: FKIRPATASDCSDILRLIKELAKYEYMEDQVILTEKDLQEDGFGEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCRCSSMHFLVAEWNEPSINFYKRRGASDLSSEEGWRLFKIDKEYLLKMAA
type: DOMAIN
name: GNAT_dom
description: GNAT domain

phrase: GEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCRCSSMHFLVAEWNEPSINFYKRR
type: DOMAIN
name: GNAT_dom
description: GNAT domain
Protein sequence:
MPDARPVSVLLAGGGTAGHVNPLLAVADELRRRYPDATLTVLGTAEGLEARLVPLAGLPLAVVPRVPLPRRPSLDLLRLPARLRAAVTAAGRAIDESDAQVVVGFGGYVATPAYLAARRRGVPVVIHEQNARPGLANRLGARWARAVAVTFPATNLRGAVVTGLPLRAPVAALVAHRAKDAAGTRARAAEALGLDPALPTLLVTGGSLGAASINAALAGAAGDLLAAGVQVLHLTGRDKSGPVVAARDALELDREVVSRYHVREYLDEMHLGLACADLVLGRAGAGTVCEVAALGLPAVYVPLPIGNGEQRRNAEPVVAAGGALLVDDADLDAAWVAAHLPALLVGSQSAQARARMAAAAASVGVPDASGRVVRLIEAQLPQREPAAPATHAAPAPASTSAVSPRPAVSPSPVEPVEPAEQPAVAGPVPVTELGRVHLVGVGGAGMSAVALLLAARGLVVSGSDASDGPALPGLRDAGVTVSVGHDAALVDGVDTLVVSSAVRESNPELAAARAAGLRVLHRSEALASLMADREGVAVAGAHGKTTTSAMIATGLLAAGADPSFAIGGTVLTADGPVGGGRQGDGPAFVAEADESDGSFLAYGPLVSVVTNVEPDHLDHYGTREAFEAAFVEFAGRIRTGGLLVACVDDDGARRLVERVRAGLEARGVEVRTYGRSAQADVRVGESAPRDGGWAFDLTALGAAETPDGAAAQVGTTTITLALPGAHNALNAAAAWAVLVRLGVPGPEAAAALGHFRGTGRRFEERGTA

Annotated regions:
phrase: VAGAHGKTTTSAMIATGLLAAGADPSFAIGGTVLTADGPVGGGRQGDGPAFVAEADESDGSFLAYGPLVSVVTNVEPDHLDHYGTREAFEAAFVEFAGRIRTGGLLVACVDDDGARRLVERVRAGLEARGVEVRTYGRSAQADVRVGESAPRDGGWAFDLTALGAAETPDGAAAQVGTTTITLALPGAHNALNAAAAWA
type: DOMAIN
name: Mur_ligase_cen
description: Mur ligase, central

phrase: VHLVGVGGAGMSAVALLLAARGLVVSGSDASDGPALPGLRDAGVTVSVGHDAALVDGVDTLVVSSAVRESNPELAAARAAGLRVLHRSEALASLMA
type: DOMAIN
name: Mur_ligase_N
description: Mur ligase, N-terminal catalytic domain

phrase: VLLAGGGTAGHVNPLLAVADELRRRYPDATLTVLGTAEGLEARLVPLAGLPLAVVPRVPLPRRPSLDLLRLPARLRAAVTAAGRAIDESDAQVVVGFGGYVATPAYLAARRRGVPVVIHEQNARPGLANRLGARWARAV
type: DOMAIN
name: GlycoTrans_28_N
description: Glycosyltransferase family 28, N-terminal domain

phrase: TLLVTGGSLGAASINAALAGAAGDLLAAGVQVLHLTGRDKSGPVVAARDALELDREVVSRYHVREYLDEMHLGLACADLVLGRAGAGTVCEVAALGLPAVYVPLPIGNGEQRRNAEPVVAAGGALLVDDADLDAAWVAAHLPALLVGSQSAQARARMAA
type: DOMAIN
name: Glyco_trans_28_C
description: Glycosyl transferase, family 28, C-terminal
Protein sequence:
MRQSRRASSRVNRLVVIFIIVASGFLLLYKNTQQFTQIDRECIQDEWQENNNLGNTIDDGSNFRIAFTDIQQNYTWLHLPNFLENSEILMIVSSNCDNFARRNILRKTWMNPENSQIIGDGRMKALFLVGINGADEKLNAVVLEEAKVFGDMIVIDLEDNYLNLSYKTISLLLYSISKTKSPNLIGKIDEDVLFYPDQLTPLINDKTINTSTFSIYGEKYEAGVAVNHGEDNAKWQISKNSFKCSVYPSYLSGPTYFLTRKAAKRIVEATKHRKFISVDVEDVFITGLLAGDVGIKKNQLPFMYMIEEATNDRESYEILAWHTKKRDQQYIEAFESLKLNRCKSCRKSKNPDLEELKEK

Annotated regions:
Protein sequence:
MAKTPAKAPAAAAKPAAVKKPAAPKAAAAPKAAAVATPAAKKPAAPKAAPVSKVAGTREKPDTIRAGTGKLVQVIGAVVDVEFTGELPAILNALETVNIATGQRLVFEVAQHLGQNTVRAIAMDATEGLVRGQEVRDTGQSIRVPVGPGTLGRIMNVIGEPIDEQGPIKSDIFRTIHRDAPTFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKINGSTEGSRCALVYGQMNEPPGARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLIIGQEHYDVARSVQEVLQQYKSLKDIIAILGMDELSEEDKLTVARARKISRFLSQPFHVAEQFTNTPGAFVSLKDTIRSFKGIVDGEYDHLPEAAFYMVGPIEEAVAKAEKLAGEA

Annotated regions:
phrase: VQVIGAVVDVEFTGELPAILNALETVNIATGQRLVFEVAQHLGQNTVRAIAMDATEGLVRGQEVRDT
type: DOMAIN
name: ATPase_F1/V1/A1_a/bsu_N
description: ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain

phrase: KGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKINGSTEGSRCALVYGQMNEPPGARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRDI
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: PAVDPLDST
type: ACTIVE_SITE
name: ATPase_a/bsu_AS
description: ATPase, alpha/beta subunit, nucleotide-binding domain, active site

phrase: GIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKINGSTEGSRCALVYGQMNEPPGARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRDIAAQAIFPAVDPLDST
type: DOMAIN
name: ATPase_F1/V1/A1_a/bsu_nucl-bd
description: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain

phrase: IGQEHYDVARSVQEVLQQYKSLKDIIAILGMDELSEEDKLTVARARKISRFLSQPFHVAEQFTNTPGAFVSLKDTIRSFKGIVDGEY
type: DOMAIN
name: ATP-synt_VA_C
description: ATP synthase A/B type, C-terminal domain