Protein sequence:
MGQASSHSENDLFISHLKESLKVRRIRVRKKDLVSFFSFIFKTCPWFPQEGSIDSRVWGRVGDCLNDYYRVFGPETIPITTFNYYNLIRDVLTNQSDSPDIQRLCKEGHKILISHSRPPSRQAPVTITTSEKASSRPPSRAPSTCPSVAIDIGSHDTGQSSLYPNLATLTDPPIQSPHSRAHTPPQHLPLLANSKTLHNSGSQDDQLNPADQADLEEAAAQYNNPDWPQLTNTPALPPFRPPSYVSTAVPPVAVAAPVLHAPTSGVPGSPTAPNLPGVALAKPSGPIDETVSLLDGVKTLVTKLSDLALLPPAGVMAFPVTRSQGQVSSNTTGRASPHPDTHTIPEEEEADSGESDSEDDEEESSEPTEPTYTHSYKRLNLKTIEKIKTAVANYGPTAPFTVALVESLSERWLTPSDWFFLSRAALSGGDNILWKSEYEDISKQFAERTRVRPPPKDGPLKIPGASPYQNNDKQAQFPPGLLTQIQSAGLKAWKRLPQKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPACQSAIRPFRQKELSTMSPLLWYCSAHAVGLAIGAALQNLAPAQLLEPRPAFAIIVTNPAIFQETAPKKIQPPTQLPTQPNAPQASLIKNLGPTTKCPRCKKGFHWASECRSRLDINGQPIIKQGNLEQGPAPGPHYRDELRGFTVHPPIPPANPCPPSNQPRRYVTDLWRATAGSAGLDLCTTTDTILTTQNSPLTLPVGIYGPLPPQTFGLILAEPALPSKGIQVLPGILDNDFEGEIHIILSTTKDLVTIPKGTRLAQIVILPLQQINSNFHKPYRGASAPGSSDVYWVQQISQQRPTLKLKLNGKLFSGILDTGADATVISYTHWPRNWPLTTVATHLRGIGQATNPQQSAQMLKWEDSEGNNGHITPYVLPNLPVNLWGRDILSQMKLVMCSPNDTVMTQMLSQGYLPGQGLGKNNQGITQPITITPKKDKTGLGFHQNLPRSRAIDIPVPHADKISWKITDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPWNTPIFIIKKKSGSWRLLQDLRAVNKVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACDSAEAAKACYAHIISCLTSYGLKIAPDKVQVSEPFSYLGFELHHQQVFTPRVCLKTDHLKTLNDFQKLLGDIQWLRPYLKLPTSALVPLNNILKGDPNPLSVRALTPEAKQSLALINKAIQNQSVQQISYNLPLVLLLLPTPHTPTAVFWQPNGTDPTKNGSPLLWLHLPASPSKVLLTYPSLLAMLIIKGRYTGRQLFGRDPHSIIIPYTQDQLTWLLQTSDEWAIALSSFTGDIDNHYPSDPVIQFAKLHQFIFPKITKCAPIPQATLVFTDGSSNGIAAYVIDNQPISIKSPYLSAQLVELYAILQVFTVLAHQPFNLYTDSAYIAQSVPLLETVPFIKSSTNATPLFSKLQQLILNRQHPFFIGHLRAHLNLPGPLAEGNALADAATQIFPIISDPIHEATQAHTLHHLNAHTLRLLYKITREQARDIVKACKQCVVATPVPHLGVNPRGLVPNAIWQMDVTHFTPFGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPHTIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKNALNRLARSPLGFSMQQPRNLLSHALFQLNFLQLDSQGRSAADRLWHPQTSQQHATVMWRDPLTSVWKGPDPVLIWGRGSACIYDQKEDGPRWLPERLIRHINNQTAPLCDRPSNPNTAPGPKGSP

Annotated regions:
phrase: PNDTVMTQMLSQGYLPGQGLGKNNQGITQPITITPKKDKTGLGFHQ
type: DOMAIN
name: G_patch_dom
description: G-patch domain

phrase: QQRPTLKLKLNGKLFSGILDTGADATVISYTHWPRNWPLTTVATHLRGIGQATNPQQSAQMLKWEDSEGNNGHITPYVLPNLPVNLWGRDILSQMK
type: DOMAIN
name: Retropepsins
description: Retropepsins

phrase: IPQATLVFTDGSSNGIAAYVIDNQPISIKSPYLSAQLVELYAILQVFTVLAHQPFNLYTDSAYIAQSVPLLETVPFIKSSTNATPLFSKLQQLILNRQHPFFIGHLRAHLNLPGPLAEGNALADAATQIFP
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: ATVMWRDPLTSVWKGPDPVLIWGRGSACIYDQKEDGPRWLPERLIRHIN
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: VMWRDPLTSVWKGPDPVLIWGRGSACIYDQKEDGPRWLPERLIRH
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: LAAGHIEPTNSPWNTPIFIIKKKSGSWRLLQDLRAVNKVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACDSAEAAKACYAHIISCLTSYGLKIAPDKVQVSEPFSYLGFE
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: PNAIWQMDVTHFTPFGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPHTIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYN
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: AATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPACQSAIRPFRQKELSTM
type: DOMAIN
name: Gag_p24_C
description: Retroviral nucleocapsid Gag protein p24, C-terminal domain

phrase: NDLFISHLKESLKVRRIRVRKKDLVSFFSFIFKTCPWFPQEGSIDSRVWGRVGDCLNDYYRVFGPETIPITTFNYYNLIRDVL
type: DOMAIN
name: B_retro_matrix
description: Beta-retroviral matrix protein

phrase: DPIHEATQAHTLHHLNAHTLRLLYKITREQARDIVKACKQC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: CSPNDTVMTQMLSQGYLPGQGLGKNNQGITQPITITPKKDKTGLGF
type: DOMAIN
name: G_patch_dom
description: G-patch domain

phrase: ATQAHTLHHLNAHTLRLLYKITREQARDIVKACKQC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: IKKKSGSWRLLQDLRAVNKVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACDSAEAAKACYAHIISCLTSYGLKIAPDKVQVSEPFSYLGFE
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: GILDTGADATV
type: ACTIVE_SITE
name: Aspartic_peptidase_AS
description: Aspartic peptidase, active site

phrase: VCLKTDHLKTLNDFQKLLGDIQWLRPYLKLPTSALVPLNNILKGDPNPLSVRALTPEAKQS
type: DOMAIN
name: RVT_thumb
description: Reverse transcriptase thumb

phrase: RGLVPNAIWQMDVTHFTPFGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPHTIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKNALNRLARSPLGFSMQQPRNLLSHALFQLNFLQLDSQGRSAADRLWHPQ
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: QATLVFTDGSSNGIAAYVIDNQPISIKSPYLSAQLVELYAILQVFTVLAHQPFNLYTDSAYIAQSVPLLETVPFIKSSTNATPLFSKLQQLILNRQHPFFIGHLRAHLNLPGPLAEGNALADAA
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: FSGILDTGADATVISYTHWPRNWPLTTVATHLRGIGQATNPQQSAQMLKWEDSEGNNGHITPYVLPNLPVNLWGRD
type: DOMAIN
name: Peptidase_A2_cat
description: Peptidase A2A, retrovirus, catalytic

phrase: MLSQGYLPGQGLGKNNQGITQPITITPKKDKTGL
type: DOMAIN
name: G_patch_dom
description: G-patch domain

phrase: LKLKLNGKLFSGILDTGADATVISYTHWPRNWPLTTVATHLRGIGQATNPQQSAQMLKWEDSEGNNGHITPYVLPNLPVNLWGRDIL
type: DOMAIN
name: Retropepsin-like_cat_dom
description: Retropepsin-like catalytic domain

phrase: VTDLWRATAGSAGLDLCTTTDTILTTQNSPLTLPVGIYGPLPPQTFGLILAEPALPSKGIQVLPGILDNDFEGEIHIILSTTKDLVTIPKGTRLAQIVILPLQQINS
type: DOMAIN
name: dUTPase-like
description: dUTPase-like

phrase: AGLDLCTTTDTILTTQNSPLTLPVGIYGPLPPQTFGLILAEPALPSKGIQVLPGILDNDFEGEIHIILSTTKDLVTIPKGTRLAQIV
type: DOMAIN
name: dUTPase_trimeric
description: dUTPase, trimeric