nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MRFCFDRLCFATKRPATNNNRQSSSHSTNEPQCTSTCTTAESHSHSHSHSPPSTTTDAAAAAATATATPSTAPPQKQQQIHQQPIGKGGDLFYAEYQRLKPAIIHRDYRDKPPDIEAENEEKLPQKETPPAPQSPKKSQTPSIQTEIQRTELQIQQLQSEIQQTHLQLRRYRRHSSAEDRRKPKQQHHTNHTKVLSPDSDFVSDSAGDPKIRKAASMQQEPNANYQFQTDLGLVSIVQNVANNAANTNNAYAATSNNNNNNNNLLGGGVGIVTLPSAGNNLGLLGLEQTASGLRLIQAPPPHSDVLTHTLIYGTPPSGAQQLHTDPRSLLHQQELQLQQRYQQLQQLQAQTQGLFSYHQPSPSGNPGASQPVAIPGAATVASCNSPTQLQAQPLPLSHPSTLALAQVQQQMQGLRISGGCGAPSPGSATPSPVGMGEPTLMMSNTAAYVAATPQEERFIQIIQAKDLKIQEMQRALQFKDNEIAELKSHLDKFQSVFPFSRSSAAGAGGSSGGGSGPSTATGATRKSGQTFQRQRAQGISAEPQSESSVLLEHVTFRKYDKNERSRELIKSAILDNDFMKNLDLSQIREIVDCMYPVKYPAKNLIIKEGDVGSIVYVMEATLSRQGSSAGTSFLLDGISALSKYQMTLENIRKLEQQSRDRRRIVSIKELNGYRPSALQHHQQQQLENNWVTEDQDQEEKPQKEEGPAPGPNPKQKIPEHVEEPAVNHYVLDPTERPRVPRPRQQLSVKPPSLRRSQTMAMPPSYATM

Annotated regions:
phrase: FMKNLDLSQIREIVDCMYPVKYPAKNLIIKEGDVGSIVYVM
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain
Protein sequence:
MSIRIKIDKLRQIVAYFSEFSEEVSINVDSTDELMYIFAALGGSVNIWAIIPLSASVFYRGAENIVFNLPVSKVKSCLCSFHNDAIIDIEPDLENNLVKLSSYHVVSVDCNKELMPIRTDTTICLSIDQKKSYVFNFHKYEEKCCGRTVIHLEWLLGFIKCISQHQHLAIMFKDDNIIMKTPGNTDAFSREYSMTECSQELQKFSFKIAISSLNKLRGFKKRVNVFETRIVMDNDDNILGMLFSDRVQSFKINIFMAFLD

Annotated regions:
Protein sequence:
MEEFVRQCFNPMIVELAEKAMKEYGEDRKIETNKFAAICTHLEVCFMYSDFHFINEQGESIIVELDDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMRRLADQSLPPNFSCLENFRAYVDGFEPNGYIEGKLSQMSKEVNAKIEPFLKTTPRPIKLPDGPPCSQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMRTFFGWKEPYVVKPHDKGINPNYLLSWKQLLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCRDISDLKQYDSDEPELRSLSSWIQNEFNKACELTDSIWIELDEIGEDVAPIEHIASMRRNYFTAEVSQCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRSAIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPKGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLVVQALRDNLEPGTFDLGGLYEAIEECLINDPWVLLNASWFNSFLTHALR

Annotated regions:
Protein sequence:
MPPFELGDPIPSETAHAVSVSLPTWSANVGYEEGQDWVVKRMATGYPRFFIHRTIQAFAADIVATHVSTKAKRTSDITAMLFPTPTIASRCVDFIRSRAPADVCSNIEVVNLVLDMSDPEARALEPLCPSISAVIMPQDGFPFAKQYWQHSGDGVSSRRAEFCHGLFKDGLLRPDTELRNAAVSAAKPCRGPKRYQRQASLDAGGNQQTIMHGHIHRATGETAMIQETSRFLEERFGRNLDLSFVHPAKSAIKRRIAGALRSADHDLGGSPSLSEKQMSSNTRGIANLREEDIYLFPCGMNAIFHAHRALYSIRTPPGSTPLKSVNFGFPYVDTLKILEKFNPSGALFYGHGSKSDLDDLETRLESGERYLALFCEFPGNPLLTCPDLVRIRELADKYEFAVVVDETIGTFANVNVLQFADIVVSSLTKIFSGDCNVMGGGAIFNPNSRYYSALKSFVQQQLEDTYWPEDVIFMERNSRDFVARIDRVNANAEAICRVLQDHPLVKTLYYPKYNDSRANYEAVKLPQGGYGGLISVVLKGKKQAVAFYDAIETAKGPSLGTNFTLTSPYVLLAHYQELDWAEQYGVDRNLIRISVGLEGTDELINVFTRALKVAEEQSQYP

Annotated regions:
Protein sequence:
MNKWTGLSAAAVLESRAQHGANLIPTKKLTPFWLLFLEQFKSLVVILLLVATILSLVVAIISGVNANWLFDHNLVIEWTQPFVILITVLANSLIGSIQEFKAQKSAHTLKSLTQPFTRVFREEGLVSLPVGEVVVGDIIFLEAGDIIPADGKVLQANHLRCMESFLTGESVPVDKSVVNTGGKGLLEQTNLLFSGAQVVFGSGVFEVTAVGLNTQVGQIVKTVDSSATKLSPLQQKLEKVGKWFSWFGLGLFVVVFLVQLGLLGFHNFSANWSIALIGAIALVVAIIPEGLVTFINVIFALSVQKLTKQKAIIKYLAAIETLGGVQIICTDKTGTLTQNKMKVVDYFCFSNTTQTDLARALCLCNNATVNTNGDSTGDPTEIALLQWLDRDGLELNHYTRVYEKAFDSNRKLMSVVVQKDNRFIVIVKGAHDVLLPLCKGLDSNQIKPLIDERASNGLRNLAVGLKVLYCFDPENTQTVNELESELDFLGSVSLQDPPRIESKAAIMACHQANITPIMITGDHLKTATAIAKELGILTDERQAILGVDLDPAKIMEYRVFARVTPQQKLEIVNAWKQAGYTVAVTGDGVNDAPALVTSDVGCCMGQTGVDIAKDAADVIISDDNFATIVNGIEQGRKTFLTCKRVLFNLFLTSIAGTIVVLLGLFVLGEVFREQLSKANHNFQVFTPTQLLIINLFVHGFPAVALAIQPVQEKLMLKPFSTKNLFYNRGGFDLIWQSLLLSFLTLLFYSLGMVYAINDPELGKSGDLI

Annotated regions:
phrase: KWTGLSAAAVLESRAQHGANLIPTKKLTPFWLLFLEQFKSLVVILLLVATILSLVVA
type: DOMAIN
name: ATPase_P-typ_cation-transptr_N
description: Cation-transporting P-type ATPase, N-terminal

phrase: DKTGTL
type: PTM
name: ATPase_P-typ_P_site
description: P-type ATPase, phosphorylation site

phrase: KWTGLSAAAVLESRAQHGANLIPTKKLTPFWLLFLEQFKSLVVILLLVATIL
type: DOMAIN
name: ATPase_P-typ_cation-transptr_N
description: Cation-transporting P-type ATPase, N-terminal

phrase: AIIKYLAAIETLGGVQIICTDKTGTLTQNKMKVVDYFCFSNTTQTDLARALCLCNNATVNTNGDSTGDPTEIALLQWLDRDGLELNHYTRVYEKAFDSNRKLMSVVVQKDNRFIVIVKGAHDVLLPLCKGLDSNQIKPLIDERASNGLRNLAVGLKVLYCFDPENTQTVNELESELDFLGSVSLQDPPRIESKAAIMACHQANITPIMITGDHLKTATAIAKELGILTDERQAILGVDLDPAKIMEYRVFARVTPQQKLEIVNAWKQAGYTVAVTGDGVNDAPALVTSDVGCCMGQTGVDIAKDAADVIISDDNFATIVNGIEQGRK
type: DOMAIN
name: P_typ_ATPase_HD_dom
description: P-type ATPase, haloacid dehalogenase domain

phrase: QVFTPTQLLIINLFVHGFPAVALAIQPVQEKLMLKPFSTKNLFYNRGGFDLIWQSLLLSFLTLLFYSLGMVYAIN
type: DOMAIN
name: ATPase_P-typ_cation-transptr_C
description: Cation-transporting P-type ATPase, C-terminal
Protein sequence:
MASSSAPRFRVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEWSIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYICGPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDFTVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNTVVHYMYEGETFINYSFASGEDVTASQ

Annotated regions:
phrase: DRDADMKQIIESSSSREEFLSMVCNRFPFEWSIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYICGPTRTGKTS
type: DOMAIN
name: Gemini_AL1_REP_central
description: Geminivirus AL1 replication-associated protein, central domain

phrase: RVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDVNTAEWGT
type: DOMAIN
name: CRESS_DNA_REP
description: CRESS-DNA virus replication initiator protein, endonuclease domain

phrase: FRVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDVNTAEWGTF
type: DOMAIN
name: CRESS_DNA_REP
description: CRESS-DNA virus replication initiator protein, endonuclease domain
Protein sequence:
MTAILERRETTSLWARFCEWVTSTENRLYIGWFGCLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFLGICAYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENQSANAGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFNLNGFNFNQSVLDSQGRVLNTWADIINRANLGMEVMHERNAHNFPLDLA

Annotated regions:
phrase: NILMHPFHMLGVAGVFGGSLFSAMHG
type: CONSERVED_SITE
name: Photo_RC_L/M_CS
description: Photosynthetic reaction centre, L/M, conserved site
Protein sequence:
MKTLQMTLSNKKNNFIPYIMAGDHEKGLEGLKETIQLLEQAGSSAIEIGVPFSDPVADGPVIEQAGLRALARNVSLSSILETLKTIDTKVPLVIMTYFNPVYQFGIEKFVAALEKTPVKGLIIPDLPKEHEDYIKPFINDKDICLVPLVSLTTPLSRQKELVADAEGFIYAVAINGVTGKENAYSNQLDQHLKALSSLTDVPVLTGFGISTLSDVDRFNKVSSGVIVGSKIVRDLHEGKENEVIKFIENAINF

Annotated regions:
phrase: IEIGVPFSDPVAD
type: ACTIVE_SITE
name: Trp_synthase_alpha_AS
description: Tryptophan synthase, alpha chain, active site
Protein sequence:
MKVHKGDMVLVISGPDKGAKGQVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVIDSDGNPTRVGYRFDENGKKVRVSRRNGKDI

Annotated regions:
phrase: KGDMVLVISGPDKGAKGQVIAAFPKTEKVLV
type: DOMAIN
name: KOW
description: KOW

phrase: KVHKGDMVLVISGPDKGAKGQVIAAFP
type: DOMAIN
name: KOW
description: KOW

phrase: GDMVLVISGPDKGAKGQ
type: CONSERVED_SITE
name: Ribosomal_uL24_CS
description: Large ribosomal subunit protein uL24, conserved site

phrase: GDMVLVISGPDKGAKGQVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVM
type: DOMAIN
name: Ribosomal_uL24_KOW
description: Large ribosomal subunit protein uL24, KOW domain
Protein sequence:
MTVIADTSRCFILPDLISYCQFPLRCNPHRDAAQSSTSWLINNYPGMSPEQLVEVRRLDADTLASYCYPDCDVERLRVASDFLAILFHLDDITDTMEEGGTEQLEGTIMDAFRSEGKLDQREDEPRVRVPAKDLWTRFIRNAKPCVQTRLRDNIALFFKTAREEARDRERGVLLDLESYINMRRGTSACLSCFALTEYSIGIELPQYVVDDPIVQALNQSANDLVSWSNDIYSFNNEQAHGIHNMIVILMKSQGLGMQDAIDYVSDLFKQTIDGFMENTQLLPSWGAAVDADVRLYVQGLQDWVVGNLHWSFATERYFGKRGAEIKATRVVELLPKKPVS

Annotated regions:
Protein sequence:
MPKRRAGFRKGWYARQRNSLTHQMQRMTLSEPTSELPTQRQIEALMPYAWNEAHVQPPVTPTNILIMLLLLLQRVQNGAAAAFWAYIPDPPMIQSLGWDREIVPVYVNDTSLLGGKSDIHISPQQANISFYGLTTQYPMCFSYQSQHPHCIQVSADISYPRVTISGIDEKTGKKSYGNGTGPLDIPFCDKHLSIGIGIDTPWTLCRARVASVYNINNANATFLWDWAPGGTPDFPEYRGQHPPIFSVNTAPIYQTELWKLLAAFGHGNSLYLQPNISGTKYGDVGVTGFLYPRACVPYPFMLIQGHMEITLSLNIYHLNCSNCILTNCIRGVAKGEQVIIVKQPAFVMLPVEIAEAWYDETALELLQRINTALSRPKRGLSLIILGIVSLITLIATAVTACVSLAQSIQAAHTVDSLSYNVTKVMGTQEDIDKKIEDRLSALYDVVRVLGEQVQSINFRMKIQCHANYKWICVTKKPYNTSDFPWDKVKKHLQGIWFNTNLSLDLLQLHNEILDIENSPKATLNIADTVDNFLQNLFSNFPSLHSLWKTLIGLGIFVIIIAIVIFVFPCVVRGLVRDFLKMRVEMLHMKYRTMLQHRHLMELLKNKERGAAGDDP

Annotated regions:
phrase: VDSLSYNVTKVMGTQEDIDKKIEDRLSALYDVVRVLGEQVQSINFRMKIQCHANYKWICVTKKPYNTSDFPWDKVKKHLQGIWFNTNLSLDLLQLHNEILDIENSPKATLNIADTVDNFLQNLFSNFPSLH
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: TACVSLAQSIQAAHTVDSLSYNVTKVMGTQEDIDKKIEDRLSALYDVVRVLGEQVQSINFRMKIQCHANYKWICVTKKPYNTSDFPWDKVKKHLQGIWFNTNLSLDLLQLHNEILDIENSPKATLNIADTVDNFLQNLFSNFPSLHSLWKTLIGLGIFVIIIAIVIFVFPCVVRGLVRDFLKMRVEM
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like
Protein sequence:
MKLIVGLGNPGEKYAKTKHNVGYWVLDLLAEKLALSFDQKTENGIYVKQPDFILAKPTTFMNKSGDFVEELIKFYKINTQDLMIIYDDMNFEVGQAAIKTTGSAGGQRGMAHIIEKCKTKEIKRLKIGISRGKNAKEYVLSPFLPKDNAKIKLVIEEAANILIFYLSNSFITTIEKFNANKNKV

Annotated regions:
phrase: YAKTKHNVGYWVL
type: CONSERVED_SITE
name: Pept_tRNA_hydro_CS
description: Peptidyl-tRNA hydrolase, conserved site
Protein sequence:
MNIGFISLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETAELKKKGSLQFLIAAGCLSQRYGRELLLEIPELDGVFGISSVSSIAGVVNRIAQGERVCFTEATPTEYFEKGHRILTTPPGSAYLKISEGCNNSCSYCVIPSIRGKLRSRQINELLNEAAQLLKMGIKELVLVAQDTSAYGHDISPQSALPTLLRELSKLDGLEWIRLMYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRARIPNLTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDEIKAERKDKILRLQQKITRQKNLARINTQEKVLISSQLSKNLFVGRTYFQAPEVDGLTLVKTDFKLTKGDFVDVQLVGVRNYDMIGEYQ

Annotated regions:
phrase: GFISLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETAELKKKGSLQFLIAAGCLSQRYGRELLLEIPELDGVF
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: KISEGCNNSCSYCVIPSIRGKLRSRQINELLNEAAQLLKMGIKELVLVAQDTSAYGHDISPQSALPTLLRELSKLDGLEWIRLMYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRARIPNLTLRTTVMLGFPGEEEKDFAELYEF
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: GSAYLKISEGCNNSCSYCVIPSIRGKLRSRQINELLNEAAQLLKMGIKELVLVAQDTSAYGHDISPQSALPTLLRELSKLDGLEWIRLMYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRARIPNLTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDEIKAERKDKIL
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: NIGFISLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETAELKKKGSLQFLIAAGCLSQRYGRELLLEIPELDGVFGISSVSSIAGVVNRIAQGERVCFTEATPTEYFEKGHRILTTPPGSAYLKISEGCNNSCSYCVIPSIRGKLRSRQINELLNEAAQLLKMGIKELVLVAQDTSAYGHDISPQSALPTLLRELSKLDGLEWIRLMYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRARIPNLTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDEIKAERKDKILRLQQKITRQKNLARINTQEKVLISSQLSKNLFVGRTYFQAPEVDGLTLVKTDFKLTKGDFVDVQLVGVRNYDMIGE
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: LKISEGCNNSCSYCVIPSIR
type: CONSERVED_SITE
name: Methylthiotransferase_CS
description: Methylthiotransferase, conserved site

phrase: QEKVLISSQLSKNLFVGRTYFQAPEVDGLTLVKTDFKLTKGDFVDVQLVGVRNYDMIG
type: DOMAIN
name: TRAM_dom
description: TRAM domain

phrase: TTPPGSAYLKISEGCNNSCSYCVIPSIRGKLRSRQINELLNEAAQLLKMGIKELVLVAQDTSAYGHDISPQSALPTLLRELSKLDGLEWIRLMYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRARIPNLTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDEIKAERKDKILRLQQKITR
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: MNIGFISLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETAELKKKGSLQFLIAAGCLSQRYGRELLLEIPELDGVFGISSVSSIAGVVNRIA
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal
Protein sequence:
MAHKKGASSSRNGRDSNAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFATAPGAVEFGTKRGRKYVNIVRTVRSEA

Annotated regions:
phrase: GEILVRQRGTHFHP
type: CONSERVED_SITE
name: Ribosomal_bL27_CS
description: Large ribosomal subunit protein bL27, conserved site
Protein sequence:
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIQNANCLVIFINQIRMKIGVMFGNPETTTGANALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGKANAAKFLEDNPEVAAAVEKSIRDQLLAAPASARPAALADEPADADLDY

Annotated regions:
phrase: GVMFGNPETTTGANALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEFQILYGKGIYRNG
type: DOMAIN
name: RecA_monomer-monomer_interface
description: DNA recombination and repair protein RecA, monomer-monomer interface

phrase: RALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIQNANCLVIFINQIRMKIGVMFGNPETTTGANALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEFQILYGKG
type: DOMAIN
name: RecA-like_N
description: RecA-like, N-terminal

phrase: GEIIDLGVQLGLLEKSGAWYSYQGSKIGQGKANAAKFLEDNPEVAAAVEKSIRDQ
type: DOMAIN
name: RecA-like_C
description: RecA-like, C-terminal

phrase: ALKFYASV
type: CONSERVED_SITE
name: DNA_recomb/repair_RecA_CS
description: DNA recombination/repair protein RecA, conserved site

phrase: KGRIVEIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIQNANCLVIFINQIRMKIGVMFGNPETTTGANALKFYASVRLDIRRT
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: AIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIQNANCLVIFINQ
type: DOMAIN
name: RecA_ATP-bd
description: DNA recombination and repair protein RecA-like, ATP-binding domain
Protein sequence:
MKLSKLEKALKKVRVTPQRDDTYTIGNVLWAIRMCRLMGLDCCIDEATAAEVAILIGRFQSLDLQDSPLKGKDEKAILTTLKVLWSLLAGHHPENSDMAEKYWEAWTIRERESQKEEEGEITSIYPQLRKNFPAVSTSDGSPRYDPDLTKQLKIWADATEKHGVDHHAVNILGVITANLTQSEIRLLLQSTPQWRLDIQLIESKLNAREHAHRVWKESHPEAPKTDEIIGKGLTAAEQATLTTQECRDTYRQWVLEAALEVAQGKHDRPGPINIHQGPKEPYPEFVNKLVTALEGMAAPETTKQYLLDHLSVDHANEDCRAVLLPLGPSAPMERKLEACRAVGSSKQKMQFLAEAFAAINVKGDGEVQRCYGCGKPGHIRRDCKNQKCFKCGKPGHLQRNCKSKNGRRSSAPSGQRSGYHQEKTSVTPSAPPLVLD

Annotated regions:
phrase: KCFKCGKPGHLQRNCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: QKCFKCGKPGHLQRNCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: RCYGCGKPGHIRRDCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: RCYGCGKPGHIRRDCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KTDEIIGKGLTAAEQATLTTQECRDTYRQWVLEAALEVAQGKHDRPGPINIHQGPKEPYPEFVNKLVTALEGMAAPETTKQYLLDHLSVDHANEDCRAVLLPLGPSAPMERKLEACRAVGSSKQKMQFLAEAFAAINVKGDGEVQRCYGCGKPGHIRRDCKNQKCFKCGKPGHLQRNCKSKNGRRSSAPSGQRSGYHQ
type: DOMAIN
name: Primate_lentivir_Gag_pol-like
description: Primate lentivirus group Gag polyprotein-like

phrase: KCFKCGKPGHLQRNCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: RCYGCGKPGHIRRDCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: NIHQGPKEPYPEFVNKLVTALEGMAAPETTKQYLLDHLSVDHANEDCRAVLLPLGPSAPME
type: DOMAIN
name: Gag_p24_C
description: Retroviral nucleocapsid Gag protein p24, C-terminal domain
Protein sequence:
MKIIFATRNPGKVRELKMALEGLPVSALSQDEAGIDIHVAEDGATYAENALLKAEAVSRAAGLPALADDSGIEVDALPEELGVHSARFGGEGLGEGGRNRLLLERLKDVEESRRGGRYVCVLAFCRPGKEPVYFEGEMRGKILRSPRGEGGFGYDPLMYLPSNGCTVAELSLESKNRISHRGRALSAFRGWLAGELGVGDVRDS

Annotated regions:
Protein sequence:
MVSTKFLNKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALFLDQGMPAVERFLHLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLPSHFVVELKINDQVQTQGEGHNKKAAEQQAAKAALQKFE

Annotated regions:
phrase: EKLEFLGD
type: DOMAIN
name: RNase_III_dom
description: Ribonuclease III domain

phrase: YKTDLQELLQQNGPVNIEYSVISESQLPSHFVVELKINDQVQTQGEGHNKKAAEQQAAKAALQKF
type: DOMAIN
name: dsRBD_dom
description: Double-stranded RNA-binding domain

phrase: LNKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALFLDQ
type: DOMAIN
name: RNase_III_dom
description: Ribonuclease III domain

phrase: KLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALFLDQGMPAVERFLHLTVYPLIAKGE
type: DOMAIN
name: RNase_III_dom
description: Ribonuclease III domain

phrase: NEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALFLDQGMPAVERFLH
type: DOMAIN
name: RNase_III_dom
description: Ribonuclease III domain

phrase: YKTDLQELLQQNGPVNIEYSVISESQLPSHFVVELKINDQVQTQGEGHNKKAAEQQAAKAALQ
type: DOMAIN
name: dsRBD_dom
description: Double-stranded RNA-binding domain

phrase: KLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALFLDQGMPAVERFLHLTVYPLIA
type: DOMAIN
name: RNase_III_dom
description: Ribonuclease III domain

phrase: DYKTDLQELLQQNGPVNIEYSVISESQLPSHFVVELKINDQVQTQGEGHNKKAAEQQAAKAALQKF
type: DOMAIN
name: dsRBD_dom
description: Double-stranded RNA-binding domain
Protein sequence:
MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFIDFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWEVWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL

Annotated regions:
Protein sequence:
MSCRNFQLSPRCGNRSFSSCSAIMPRMVTHYEVSKAPCRSGGGGGLRALGCLGSRSLCNVGFGRPRVASRCGMPGFGYRAGATCGSSACITPVTINESLLVPLELEIDPTVQRVKRDEKEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRSCQSNMEPLFEGYICALRRQLDCVSGDHGRLEAELCSLQEALEGYKKKYEEELSLRPCAENEFVTLKKDVDTAFLVKADLETNLEALEHEIEFLKALFEEEIGLLQSQISETSVIVKMDNSRELDVDGIVAEIKAQYDDIASRSKAEAEAWYQCRYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEAVKGQRCKLEGAIAQAEQQGEAALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIATYRRLLEGEEHRLCEGIGPVNISVSSSKGAVLYEPCVMGTPMLRTEYCTGTTGVLRNSGGCNVVGTGELYIPCEPQGLLGCGNGRSSSMKVGVGSNSCSR

Annotated regions:
phrase: DEKEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRSCQSNMEPLFEGYICALRRQLDCVSGDHGRLEAELCSLQEALEGYKKKYEEELSLRPCAENEFVTLKKDVDTAFLVKADLETNLEALEHEIEFLKALFEEEIGLLQSQISETSVIVKMDNSRELDVDGIVAEIKAQYDDIASRSKAEAEAWYQCRYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEAVKGQRCKLEGAIAQAEQQGEAALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIATYRRLLEGEEH
type: DOMAIN
name: IF_rod_dom
description: Intermediate filament, rod domain

phrase: DEKEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRSCQSNMEPLFEGYICALRRQLDCVSGDHGRLEAELCSLQEALEGYKKKYEEELSLRPCAENEFVTLKKDVDTAFLVKADLETNLEALEHEIEFLKALFEEEIGLLQSQISETSVIVKMDNSRELDVDGIVAEIKAQYDDIASRSKAEAEAWYQCRYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEAVKGQRCKLEGAIAQAEQQGEAALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIATYRRLLEGEEH
type: DOMAIN
name: IF_rod_dom
description: Intermediate filament, rod domain

phrase: IATYRRLL
type: CONSERVED_SITE
name: IF_conserved
description: Intermediate filament protein, conserved site

phrase: GFGRPRVASRCGMPGFGYRAGATCGSSACITPVTINESLLVPLELEIDPTVQR
type: DOMAIN
name: Keratin_2_head
description: Keratin type II head

phrase: EKEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRSCQSNMEPLFEGYICALRRQLDCVSGDHGRLEAELCSLQEALEGYKKKYEEELSLRPCAENEFVTLKKDVDTAFLVKADLETNLEALEHEIEFLKALFEEEIGLLQSQISETSVIVKMDNSRELDVDGIVAEIKAQYDDIASRSKAEAEAWYQCRYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEAVKGQRCKLEGAIAQAEQQGEAALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIATYRRLLEGEEHR
type: DOMAIN
name: IF_rod_dom
description: Intermediate filament, rod domain
Protein sequence:
MEARAIAKYIRMSPTKVGVILDLIRGKQVNEAFAILQYTPREAAVVINKVLKSAVANAENNLELNADNLYVSECFVGQGSTLKRFQPHAQGRAFKILKKTSNITVVVKERA

Annotated regions:
phrase: KRFQPHAQGRAFKILKKTSNITVV
type: CONSERVED_SITE
name: Ribosomal_uL22_CS
description: Large ribosomal subunit protein uL22, conserved site
Protein sequence:
MTTAVVFDYGFGNVRSMVRALANLGVDTTLTSDYRQSLEADGLVVPGVGAFAACMEGLKKVDGDRVIYDRIRAGRPVLGVCVGEQIMFEHGLEHGAHAAGIGLIGGSVNLLDADVVPHMGWDTIETAPDSVLLNGVENERFYFVHSYAAMEVKPADTSRFDIDLSDSPERVSWCSYGRSRFVAAYEHGPLSATQFHPEKSGDAGSQLLKNWIATL

Annotated regions:
phrase: VVFDYGFGNVRSMVRALANLGVDTTLTSDYRQSLEADGLVVPGVGAFAACMEGLKKVDGDRVIYDRIRAGRPVLGVCVGEQIMFEHGLEHGAHAAGIGLIGGSVNLLDADVVPHMGWDTIETAPDSVLLNGVENERFYFVHSYAAMEVKPADTSRFDIDLSDSPERVSWCSYGRSRFVAAYEHGPLSATQFHPEKSGDAGSQLLKN
type: DOMAIN
name: GATASE
description: Glutamine amidotransferase
Protein sequence:
MAAKSDGVLKMKKSDVAFTPLQNSEHSGSVQGLHPGAQPDSAGAGDADFANGESRCCGGGGSHSTCLRLSREQQKYTVWDCLWIVAAVAVYVADVGSDVWLSVDYYLEEDYWWFGLTLFFVVLGSFSVQLFSFRWFVHDFSTEDSAEAAADGSHMDGNKLLSGSASHGDVTAQHHPATPQRQASTASRNTTTNSTASTGLGPRGPKRPAYYTFCVWGSQSVIHILQLGQIWRYIHTIYLGVQSRQSAETERWRYYWRMVYEFADVSMLHLLATFLESAPQLVLQLCIIIQTHKLLAVQGCRLFIYYLLILAENAALSALWYLYRSPLATDAFAVPALCVIFSSFLTGVVFMLMYYAFFHPNGPRFGRSMSGHGLNLDPTAQFSTLPSEVATNSLRSNRGATATLERDAGKYSERDGCMPVFQVRPTVPSTPSSRAPRLEETVIKIDLCRNRYPAWERHVLDRSIRKAILAVDCSLTPPRLQYKDDALVQERLEYETTL

Annotated regions:
Protein sequence:
MSVIRRLAAVLRQSDSGISAFLVTAPRKYKVYKIPKRTTGFRVIAQPAKGLKDIQRAFVQLYNFPVHDASMAYMKGKGIRDNAAAHAGNQYLLKADLEDFFNSITPAIFWRCIEMSSALTPQFEPQDKFFIEKILFWQPIKHRKTKLILSVGAPSSPVISNFCMYEFDNRIHAACNKLEITYTRYADDLTFSCNIPNVLKAVPSTIEALLKDLFGSELRLNHSKTVFSSKAHNRHVTGVTINNEETLSLGRDRKRFIKHLINQYKYGLLDNEDKAYLTGLLAFASHIEPGFITRMNEKYSLELMGRLRGQR

Annotated regions:
phrase: DSGISAFLVTAPRKYKVYKIPKRTTGFRVIAQPAKGLKDIQRAFVQLYNFPVHDASMAYMKGKGIRDNAAAHAGNQYLLKADLEDFFNSITPAIFWRCIEMSSALTPQFEPQDKFFIEKILFWQPIKHRKTKLILSVGAPSSPVISNFCMYEFDNRIHAACNKLEITYTRYADDLTFSCNIPNVLKAVPSTIEALLKDLFGSELRLNHSKTVFSSKAHNRHVTGVT
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: IPKRTTGFRVIAQPAKGLKDIQRAFVQLYNFPVHDASMAYMKGKGIRDNAAAHAGNQYLLKADLEDFFNSITPAIFWRCIEMSSALTPQFEPQDKFFIEKILFWQPIKHRKTKLILSVGAPSSPVISNFCMYEFDNRIHAACNKLEITYTRYADDLTFSCNIPNVLKAVPSTIEALLKDLFGSELRLNHSKTVFSSKAHNRHVTGVT
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain
Protein sequence:
MTAPSAGRIVLATHNPHKVEEFQAIVAEARPDLEVVAYDGPEPVEDGVTFAENALIKARAASIHTGLPALADDSGICVDVLGGSPGVFSAYWAGHAKDAGANLALLLDQLSDVADPHRAAQFVSTIALVIPSGSEQTVAGVWPGRLATEAAGVGGFGYDPVFIPDGQDRSAERTVAEWSTAEKNAVSHRARAFAALLPLLVAV

Annotated regions:
Protein sequence:
MDGWQRAFVLHARPYSETSLLLDFFTEQQGRVRVLAKGARSRRSALKGVLQPFTPLLARWSGRGEVKTLRSAEPVSLGLPLSGLMLYSGLYINELLSRVLDHETDYSKLFYDYLHCLQWLAGATGSPEPALRRFELALLSHLGYGVDFLHCAGSGEPVDDAMTYRYREEKGFTASVLLDRYSFSGRELRALAEGEFPDIDTLRAAKRFTRMALKPYLGGKPLKSHELFRQFLDRRPQASAGVAAARKAGGDGSDGDEGEQ

Annotated regions:
phrase: WQRAFVLHARPYSETSLLLDFFTEQQGRVRVLAKGARSRRSALKGVLQPFTPLLARWSGRGEVKTLRSAEPV
type: DOMAIN
name: DNA_rep/recomb_RecO_N
description: DNA replication/recombination mediator RecO, N-terminal
Protein sequence:
MSDFNTLRWLHGQPQGQGRLKVSPTDFQVVEDLGFAPDGDGEHLLVRIRKTGCNTRAVADALAKFLGIAAREVSFAGQKDKYAVTEQWLCARLPGKEMPAMRAFTLEGCEVLEFARHRRKLRLGALKGNRFSLVLRDITHRDEIEQRLSLISEKGVPNYFGPQRFGRGGSNIYQAKRWAQTGQPPRERNKRGFALSAARSLMFNTLVSERLQRFGVNQVMDGDALQLAGRGSWFVTTPEELTDLQARVDSGELLITAALPGSGDWGTQRAALAFEQATLADETELLTLLTREKVEAARRAMLLFPRELRWQWQDDATLEVSFWLPAGSFATSVIRELFNTADDVSDISE

Annotated regions:
phrase: GQKDKYAVTEQWL
type: CONSERVED_SITE
name: PsdUridine_synth_TruD_CS
description: Pseudouridine synthase TruD, conserved site

phrase: GVPNYFGPQRFGRGGSNIYQAKRWAQTGQPPRERNKRGFALSAARSLMFNTLVSERLQRFGVNQVMDGDALQLAGRGSWFVTTPEELTDLQARVDSGELLITAALPGSGDWGTQRAALAFEQATLADETELLTLLTREKVEAARRAML
type: DOMAIN
name: PsdUridine_synth_TruD_insert
description: Pseudouridine synthase, TruD, insertion domain
Protein sequence:
MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLTSLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGSQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVGKIARYLSEIKLKPQIQEEEQHG

Annotated regions:
phrase: IAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGSQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAV
type: DOMAIN
name: Mur_ligase_cen
description: Mur ligase, central

phrase: EPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGA
type: DOMAIN
name: Mur_ligase_C
description: Mur ligase, C-terminal

phrase: HIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLTSLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRF
type: DOMAIN
name: Mur_ligase_N
description: Mur ligase, N-terminal catalytic domain