nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADALLLAEADTDEAAAEEAAAALAAVETDIRRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVNRGCRLSDVLSGYIDPDDNIAAPTEEVPIPGTKAAAAKEEADDDEEESEGGDDEEEPKAALTRSSQPSVSVRYPSSFSDHQGPEEKRSYPQGKRRALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARMPRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLETETGLTVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIYVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLRHPTRSEHLRSFLDE

Annotated regions:
phrase: ETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQS
type: DOMAIN
name: RNA_pol_sigma70_r3
description: RNA polymerase sigma-70 region 3

phrase: DPVRMYMREMGTVELLTREGEIEIAKRIEE
type: DOMAIN
name: RNA_pol_sigma70_r1_2
description: RNA polymerase sigma-70 region 1.2

phrase: DLIQEGNIGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: FSTYATWW
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: LTAREAKVLRMR
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: TLEEVGKQFDVTRER
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: IRQIEAKAWRK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIYVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLRHPTRSEHLRSF
type: DOMAIN
name: RNA_pol_sigma_RpoD_C
description: RNA polymerase sigma factor RpoD, C-terminal

phrase: QQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADALLLAEADTDEAAAEEA
type: DOMAIN
name: RNA_pol_sigma_70_r1_1
description: RNA polymerase sigma factor 70, region 1.1

phrase: AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIYVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLR
type: DOMAIN
name: RNA_pol_sigma-70_dom
description: RNA polymerase sigma-70-like domain

phrase: DLIQEGNIGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: VLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLR
type: DOMAIN
name: RNA_pol_sigma70_r4
description: RNA polymerase sigma-70 region 4

phrase: FPGTVDYILGEYDRVNRGCRLSDVLSGYIDPDDNIAAPTEEVPIPGTKAAAAKEEADDDEEESEGGDDEEEPKAALTRSSQPSVSVRYPSSFSDHQGPEEKRSYPQGKRRALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARMPRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDL
type: DOMAIN
name: RNA_pol_sigma_70_non-ess
description: RNA polymerase sigma factor 70, non-essential domain

phrase: TLEEVGKQFDVTRERIRQIEAKAWRK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
type: DOMAIN
name: RNA_pol_sigma70_r2
description: RNA polymerase sigma-70 region 2
Protein sequence:
MSATYQLALQQLTDSALPTGAFAHSLGFESYIHRGLVRDESTFSTWLQAFVSQQLSYSDGLALRFLFEGVDVGLLDGVLSAQLLAREVREASLKMGGRLLEIGGEVFPSAELEAYRGLVRAGSASGHQPLAFGVIARSLGVPLEEALSAYLFATVTSLTQNAVRAIPLGQNAGQRVLRQAHDAVAAAIHVVAQLCWDDFGAVSPGLEISQMRHERQRARMFMS

Annotated regions:
Protein sequence:
MRVRGMQRNWQHLGKWGLLFLGTLIICNAAENLWVTVYYGVPVWKEATTTLFCASDAKSYEKEAHNVWATHACVPTDPNPQEVVLENVTERFNMWENNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLDCRNIATNGTNDTIAINDTLKEDPEAIQNCSFNTTTEIRDKQLKVHALFYKLDIVQINKDDNRTYRLINCDASTITQACPKVSWDPIPIHYCAPAGYAILKCNEKNFTGTGSCKNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIVIRSQNISDNAKTIIVHLNESVQINCTRPNNNTRKRISLGPGRVFYTTGEIIGDIRKAHCNVSGTQWRNTLAKVKAKLGSYFPNATIKFNSSSGGDLEITRHNFNCMGEFFYCNTDELFNDTKFNDTGFNGTITLPCRIKQIVNMWQEVGRAMYANPIAGNITCNSNITGLLLTRDGGLNSTNETFRPGGGNMKDNWRSELYKYKVVEIEPLGVAPTKAKRQVVKRERRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICTTNVPWNSSWSNKSLEEIWGNMTWMEWEKEVSNYSKEIYRLIEDSQNQQEKNEQELLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRKGYSPLSFQTHIPSPREPDRPEGIEEGGGEQGKDRSVRLVTGFLALAWDDLRNLCLFSYRHLRDFILIAARIVDRGLKRGWEALKYLGNLTQYWGQELKNSAISLLNATAIAVAEWTDRVIEALQRAGRAILNIPRRIRQGLERALL

Annotated regions:
phrase: LWVTVYYGVPVWKEATTTLFCASDAKSYEKEAHNVWATHACVPTDPNPQEVVLENVTERFNMWENNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLDCRNIATNGTNDTIAINDTLKEDPEAIQNCSFNTTTEIRDKQLKVHALFYKLDIVQINKDDNRTYRLINCDASTITQACPKVSWDPIPIHYCAPAGYAILKCNEKNFTGTGSCKNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIVIRSQNISDNAKTIIVHLNESVQINCTRPNNNTRKRISLGPGRVFYTTGEIIGDIRKAHCNVSGTQWRNTLAKVKAKLGSYFPNATIKFNSSSGGDLEITRHNFNCMGEFFYCNTDELFNDTKFNDTGFNGTITLPCRIKQIVNMWQEVGRAMYANPIAGNITCNSNITGLLLTRDGGLNSTNETFRPGGGNMKDNWRSELYKYKVVEIEPLGVAPTKAKRQVVKRER
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120

phrase: VQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICTTNVPWNSSWSNKSLEEIWGNMTWMEWEKEVSNYSKEIYRLIEDSQNQQEKNEQELLALD
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: MGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICTTNVPWNSSWSNKSLEEIWGNMTWMEWEKEVSNYSKEIYRLIEDSQNQQEKNEQELLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRKGYSPLSFQ
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like
Protein sequence:
MKYTLTRVNISDDDQNYPREKKIQVSDPTKKYIQKNVFMGTLSKVLHNLVNWGRKNSLWPYNFGLSCCYVEMVTSFTSVHDISRFGSEVLRASPRQADFMVIAGTPFIKMVPIIQRLYDQMLEPKWVISMGSCANSGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAYIHGLMLLQKSISKERRPLSWIIGEQGIYKANFNSEKKNLRKMRNLVKYSQDKN

Annotated regions:
phrase: CCYVEMVTSFTSVHDISRFGSEVLRASPRQADFMVIAGTPFIKMVPIIQRLYDQMLEPKWVISMGSCANSGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAYIHGLM
type: DOMAIN
name: NADH_UbQ_OxRdtase-like_20kDa
description: NADH:ubiquinone oxidoreductase-like, 20kDa subunit
Protein sequence:
MKEIVLASSNKGKINEFIEIFKQKNIKIIPQTKFNISDAKETGLSFIENAIIKARHCSKNTGLPAIADDSGLEVFSLAGDPGIYSARYAGKHGDDDANIQKLLTNLKNKDNRTARFVCALAYVRNEKDPTPVLEYGFLDGEITHIRSGEYGFGYDPVFFLPKLQKTLAELSNDEKNKISHRAIALSKIINQL

Annotated regions:
Protein sequence:
MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNERTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGADNPLKNKVGKLTKAQVLEIVDKKIADMNTKDREQAAKIIMGSARSMGVEIVD

Annotated regions:
phrase: IKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNERTKDMAGFNIPVVITVYADKS
type: DOMAIN
name: Ribosomal_uL11_N
description: Large ribosomal subunit protein uL11, N-terminal

phrase: KIIMGSARSMGVEIV
type: CONSERVED_SITE
name: Ribosomal_uL11_CS
description: Large ribosomal subunit protein uL11, conserved site

phrase: KQPPATDLIKKAAGISKGADNPLKNKVGKLTKAQVLEIVDKKIADMNTKDREQAAKIIMGSARSMGVE
type: DOMAIN
name: Ribosomal_uL11_C
description: Large ribosomal subunit protein uL11, C-terminal
Protein sequence:
MLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEAKARADVVIVSIFVNPMQFDRPDDLVRYPRTLQEDCEKLNKRKVDYVFAPAVEEIYPHGLEGQTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLIQPDIACFGEKDFQQLALIRKMVADMSYDIEIVGVPIIRAKDGLALSSRNAYLTAEQRKIAPGLYNVMNRIAEKLIAGNRELQEIIAIAEQELNEKGFRADDIQIRDADTLLELTETSKRAVILAAAWLGQARLIDNQSVTLAQ

Annotated regions:
phrase: RVALVPTMGNLHDGHMKLVDEAKARADVVIVSIFVNPMQFDR
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain
Protein sequence:
MSTGVVSPVSAAMLRPLTLEAGEIQHTFMVPTGLYTNTMQLRDQFVRKKLNPDELLPSDPAELVGSFLGYTAHVVESEPGPFDDVLPIVLNEFEARFLMGNDVHTLAASLEVEDPEAIVSAYLDARRIAHRPIRAHASALLREVEDDNAHLSAIFGGQGNSDEYFKELQQLYKTYQGLLTPFLTSASKLLRTLALEHQDASKVYTEGLDVLAWVKDEATCPKNDYLLSASVSVPVIGVIQFCHYIVTCRVLGLTPGQFREHLTSTTGHSQGIVTAVAVATSNTWEDFSGLAARALTCLFFIGLRSQVAFPYTSLLPTVLQDSLDNNEGSPSPMLAIKDLTIEKLQRYIDQTNKYLPSDKHIQVSLINGPRSFVLSGPPMSLYGLNRSIRADKAGDESVGRTPFSQRKLRITTRFLPITAPFHSFLLQHATDKIIDDITKCGAGFNAADLAIPVYDTFDGSDLRECSNLTARLIKLITELPVNWEKATAFKGITHLIDFGPGGAAGLGQLTHRNKEGTGVRVIVAGVLGGRGLSDELGFKQELFNRSTLSLKYAPDWKESFSPKLVRTSKGKVFVDTKFSRLLGRAPIMVPGMTPSTVSPEVVAATMNAGYHIELAGGGYFLEDTLVKALEQVQKLTSPAMGISLNVLYVNPFMLQWCIPMVEKLRKQGFPLEGLTIGAGVPSVEVANDYIRNLGLKHISFKPGTVESILQCAQIAAANPDFPVIVQWTGGRGGGHHSFEDFHQPILATYGQLRKQPNLILIAGSGFGD

Annotated regions:
phrase: PVIVQWTGGRGGGHHSFEDFHQPILATYGQLRKQPNLILIAGSGFG
type: DOMAIN
name: Fas1/AflB-like_central
description: Fatty acid synthase beta subunit AflB /Fas1-like, central domain

phrase: TKFSRLLGRAPIMVPGMTPS
type: DOMAIN
name: Fatty_acid_synthase
description: Fatty acid synthase

phrase: KPGTVESILQCAQIAAAN
type: DOMAIN
name: Fatty_acid_synthase
description: Fatty acid synthase

phrase: FPVIVQWTGGRGGGHHSFE
type: DOMAIN
name: Fatty_acid_synthase
description: Fatty acid synthase

phrase: VAATMNAGYHIELAGGGY
type: DOMAIN
name: Fatty_acid_synthase
description: Fatty acid synthase

phrase: IFGGQGNSDEYFKELQQLYKTYQGLLTPFLTSASKLLRTLALEHQDASKVYTEGLDVLAWVKDEATCPKNDYLLSASVSVPVIGVIQFCHYIVTCRVLGLTPGQFREHLTSTTGHSQGIVTAVAVATSNTWEDFSGLAARALTCLFFIGLRSQVAFPYTSLLPTVLQDSLDNNEGSPSPMLAIKDLTIEKLQRYIDQTNKYLPSDKHIQVSLINGPRSFVLSGPPMSLYGLNRSIRADKA
type: DOMAIN
name: SAT
description: Starter unit:ACP transacylase

phrase: LRPLTLEAGEIQHTFMVPTGLYTNTMQLRDQFVRKKLNPDELLPSDPAELVGSFLGYTAHVVESEPGPFDDVLPIVLNEFEARFLMGNDVHTLAASLEVEDPEAIVSAYLDAR
type: DOMAIN
name: FAS1_N
description: Fatty acid synthase subunit beta, N-terminal domain
Protein sequence:
MCCYLFQQRERERKGTLLTGEAYKLCETITLLDVLQIEQDIPPIGNSDDNSDDVAKSRKVRNSCMCPPGPPGERGPVGPPGLPGLPAPYYRRPRVPLSNVVFVVVIVIVFFKFQNLDESISRKMRAFGMLYSPDGQAIQLRGMPGPPGPAGPKGLRGYPGFPGPIGLDGPRGLPGTPGSKGERGERGPVGPPGFPGPKGDRGVMTGPFGVHGQHPAPSGPIGHHTTMNIGPPGPPGPPGPPGPAGRDGRHGMKGDRGLPGFDGESKIGPKGETGNPGRDGIPGARGPPGERGEKGDTAFLSTYPRGQSVSTVSSSGSQGPPGPPGPPGVCQVSQCIGVQGPPGIPGEPGRTIIGPQGPPGEKGERGERGETGDKGPPGTPGAASLLNGGKALVGPPGPPGRDGRPGEKGEKGEHGLRGDMGLPGPEGTPGKRGRRGRHGISLVAPNGTINEDLKKLLKTELMPLLIEDISELRGKNVIPGPPGPPGPRGHHGPIGPAGERGPQGLPGHSGERGERGDIGPPGLPGQPGAAESSGNQSGPRGPPGLPGPPGEKGDLGPPGLPGQPGALGLPGHPGPMGLRGPHGTEGKQGKQGPEGPKGYPGPMGPQGPPGNDGEPGIDGRPGPAGEKGDQGIPGLDAPCPTGPDGLPLPYCSWKPMDGKNDVWERRKRATLPRSESVPEERTYIKN

Annotated regions:
phrase: GLRGPHGTEGKQGKQGPEGPKGYPGPMGPQGPPGNDGEPGIDGRPGPAGEKGDQGIP
type: REPEAT
name: Collagen
description: Collagen triple helix repeat

phrase: SGPRGPPGLPGPPGEKGDLGPPGLPGQPGALGLPGHPGPMGLRGPHGTEGKQGKQ
type: REPEAT
name: Collagen
description: Collagen triple helix repeat

phrase: VGPPGPPGRDGRPGEKGEKGEHGLRGDMGLPGPEGTPGKRGRRGRH
type: REPEAT
name: Collagen
description: Collagen triple helix repeat

phrase: PGPPGPPGPRGHHGPIGPAGERGPQGLPGHSGERGERGDIGPPGLPGQPGAAESS
type: REPEAT
name: Collagen
description: Collagen triple helix repeat
Protein sequence:
MLYLTKIRNAESEFTGNEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKEQALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEVARKQGATVIAITSLTDSPLRRLAHYTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVESLKMIERSSELTQRLK

Annotated regions:
phrase: MLYLTKIRNAESEFTGNEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYS
type: DOMAIN
name: HTH_RpiR
description: Helix-turn-helix protein RpiR

phrase: ARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEVARKQGATVIAITSLTDSPLRRLAHYTLDTVSGETEWRSSSMSTRTAQNSVTDLLFV
type: DOMAIN
name: RpiR-like_SIS
description: RpiR-like, SIS domain

phrase: MLYLTKIRNAESEFTGNEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSA
type: DOMAIN
name: HTH_RpiR
description: Helix-turn-helix protein RpiR

phrase: IIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEVARKQGATVIAITSLTDSPLRRLAHYTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLND
type: DOMAIN
name: SIS_dom
description: SIS domain

phrase: ISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEVARKQGATVIAITSLTDSPLRRLAHYTLDTVSGETEWRSSSMSTRTAQNSVTDLLF
type: DOMAIN
name: SIS_dom
description: SIS domain
Protein sequence:
MSNSNIDNDPAKIDSLLRKAKSKKIPVTYDDINKALPLNKNPSIRQLEEAILKFSDAGVDILESNEDDEIKLDIGIDEEFKLSTNVDNESEDEVEEENIGSTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTMTASLCRSPVAMRCFIVWYEDLVNEKMLLRDLIDLEANMLHDEVHENDEEHNSETEVEEHEDNHLSMSRVETQILHNIIDRMKKISFICEELLIEAKKCYEESFDPKVLQNSRKYNNNLELLIHEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKYGVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMINELSVIESNTGLLVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKKLNSFRNGGKRGDGNPSDLLEA

Annotated regions:
phrase: ETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPI
type: DOMAIN
name: RNA_pol_sigma70_r3
description: RNA polymerase sigma-70 region 3

phrase: MIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQAR
type: DOMAIN
name: RNA_pol_sigma70_r2
description: RNA polymerase sigma-70 region 2

phrase: DPVRLYLKDMGGVDLLTRENEVEIAKRIEEGR
type: DOMAIN
name: RNA_pol_sigma70_r1_2
description: RNA polymerase sigma-70 region 1.2

phrase: AKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQH
type: DOMAIN
name: RNA_pol_sigma-70_dom
description: RNA polymerase sigma-70-like domain

phrase: TLEEVGQQFKVTRERIRQIESKALRK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: PVAMRCFIVWYEDLVNEKMLLRDLIDLEANMLHDEVHENDEEHNSETEVEEHEDNHLSMSRVETQILHNIIDRMKKISFICEELLIEAKKCYEESFDPKVLQNSRKYNNNLELLIHEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKYGVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMINELSVI
type: DOMAIN
name: RNA_pol_sigma_70_non-ess
description: RNA polymerase sigma factor 70, non-essential domain

phrase: AKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKKLNSF
type: DOMAIN
name: RNA_pol_sigma_RpoD_C
description: RNA polymerase sigma factor RpoD, C-terminal

phrase: DLIQEGNIGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: FSTYATWW
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: LTPREERVLRMR
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: TLEEVGQQFKVTRER
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: IRQIESKALRK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: DLIQEGNIGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: VLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQ
type: DOMAIN
name: RNA_pol_sigma70_r4
description: RNA polymerase sigma-70 region 4

phrase: DPAKIDSLLRKAKSKKIPVTYDDINKALPLNKNPSIRQLEEAILKFSDAGVDILESNEDDEIKLDIGIDEEFKLSTNVDNESE
type: DOMAIN
name: RNA_pol_sigma_70_r1_1
description: RNA polymerase sigma factor 70, region 1.1
Protein sequence:
MVLDNLGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPREHVINIVYQELINLIGRGTDIPLKKQTIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATKKYDVRIVDTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDIKGLIEKAQEVQIESDVDVDAMMKGKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGIGIELSDKEYQVTKERLEAYRFIMDSMTDEELEDPKIINASRIKRIARGSGTRPELVKELLKSHAAMQKAIKGMRGGMGRMNMKKLMKRLGQPKV

Annotated regions:
phrase: KQTIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATKKYDVRIVDTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLL
type: DOMAIN
name: SRP54_GTPase_dom
description: Signal recognition particle, SRP54 subunit, GTPase domain

phrase: LGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPREHVINIVYQE
type: DOMAIN
name: Signal_recog_particl_SRP54_hlx
description: Signal recognition particle SRP54, helical bundle

phrase: KKQTIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATKKYDVRIVDTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDI
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: QTIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATKKYDVRIVDTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLL
type: DOMAIN
name: SRP54_GTPase_dom
description: Signal recognition particle, SRP54 subunit, GTPase domain

phrase: KFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGIGIELSDKEYQVTKERLEAYRFIMDSMTDEELEDPKIINASRIKRIARGSGTRPELVKELLKSHAAMQK
type: DOMAIN
name: Signal_recog_particle_SRP54_M
description: Signal recognition particle, SRP54 subunit, M-domain

phrase: VLDNLGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPREHVINIVYQELINL
type: DOMAIN
name: Signal_recog_particl_SRP54_hlx
description: Signal recognition particle SRP54, helical bundle
Protein sequence:
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAATAEVDAAAAETEITEDVPRLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGELSEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFFTKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQDLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASGLVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKDKAEKAEKK

Annotated regions:
phrase: PRLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGELSEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLDSID
type: DOMAIN
name: Membr_insert_YidC_N
description: Membrane insertase YidC, N-terminal

phrase: RLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGELSEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFFTKPIF
type: DOMAIN
name: Membr_insert_YidC_N
description: Membrane insertase YidC, N-terminal

phrase: MGVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQDLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASGLVVYWITNNVITFTQQYLIM
type: DOMAIN
name: YidC/Oxa/ALB_C
description: Membrane insertase YidC/Oxa/ALB, C-terminal

phrase: GVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQDLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASGLVVYWITNNVITFTQQYLIM
type: DOMAIN
name: YidC_ALB_C
description: Membrane insertase YidC/ALB, C-terminal

phrase: NKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAATAEVDAAAAETEITEDVPRLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGELSEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFFTKPIFAVLHWLNAAI
type: DOMAIN
name: Membr_insert_YidC_N
description: Membrane insertase YidC, N-terminal

phrase: NMGVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQDLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASGLVVYWITNNVITFTQQYLIM
type: DOMAIN
name: YidC/Oxa/ALB_C
description: Membrane insertase YidC/Oxa/ALB, C-terminal
Protein sequence:
MIVGIGIDIIELNRIEKMIDGKLKFMERILTESERNVAKGLKGSRLTEFVAGRFAAKEAYSKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEHIVHLSISHSKEFAVAQVVLESSSR

Annotated regions:
phrase: GIGIDIIELNRIEKMIDGKLKFMERILTESERNVAKGLKGSRLTEFVAGRFAAKEAYSKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEHIVHLSISHSKEFAV
type: DOMAIN
name: 4-PPantetheinyl_Trfase_dom
description: 4'-phosphopantetheinyl transferase domain

phrase: MIVGIGIDIIELNRIEKMIDGKLKFMERILTESERNVAKGLKGSRLTEFVAGRFAAKEAYSKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEHIVHLSISHSKEFAVAQVVLE
type: DOMAIN
name: Ppantetheine-prot_Trfase_dom
description: Phosphopantetheine-protein transferase domain
Protein sequence:
MSAVWMDEQVESSARVQNSLKIEREDHKLEKRLCREVGRAIVDFNMIEEGDKVMVCVSGGKDSYAMLDILLKLQKRAPIRFDLIAVNLDQKQPGFPKHVLPDYLGKLDVPFHIENQDTYSIVKRVIPEGKTLCSLCSRLRRGILYRVAGELGATKIALGHHRDDMLQTFFLNMFFAAKLKGMPPKLVSDDGKNIVIRPMAYVPEKDLTRWAQVRDFPIIPCTLCGSQENLQRKQVGNMLREWEKKHSGRLENMFSALQNIVPSHLMDSKRHDFKNIRTTGVADAEGDKAFDAEEFSEPQRPGLSVIDIASR

Annotated regions:
phrase: KVMVCVSGGKDSYAMLDILLKLQKRAPIRFDLIAVNLDQKQPGFPKHVLPDYLGKLDVPFHIENQDTYSIVKRVIPEGKTLCSLCSRLRRGILYRVAGELGATKIALGHHRDDMLQTFFLNMFFAAKLKGMPPKLVSDDGKNIVIRPMAYVPEKDLTRWAQVR
type: DOMAIN
name: TilS/TtcA_N
description: tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal
Protein sequence:
MLFGFFRNLFRVLYRVRVTGDVRALQGNRVLITPNHVSFIDGMLLALFLPVRPVFAVYTSISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVVQGRPVVIFPEGRISVTGSLMKIYDGAGFVAAKSGATVIPLRIDGAELTPFSRLKGLVKRRLFPRIQLHILPPTQIPMPEAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLAAQYRYGAGKNCIEDINFTPDTYRKLLTKTLFVGRILEKYSVEGEKIGLMLPNAAISAAVIFGAVSRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTLADKMWIFAHLLAPRLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVLINVPMAAKPGTVGRILPGMDARLLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVLEVPSAENARGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSADKMHATAIKSDASKGEALVLFTTDSELTREKLQHYAREHGIPELAVPRDIRYLKQLPLLGSGKPDFVTLKSWVDAPEQHHE

Annotated regions:
phrase: VLITPNHVSFIDGMLLALFLPVRPVFAVYTSISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVVQGRPVVIFPEGRISVTGSLMKIYDGAGFVAAKSGATVIPLRIDG
type: DOMAIN
name: Plipid/glycerol_acylTrfase
description: Phospholipid/glycerol acyltransferase

phrase: ILFTSGSEGHP
type: CONSERVED_SITE
name: AMP-binding_CS
description: AMP-binding, conserved site

phrase: TYRKLLTKTLFVGRILEKYSVEGEKIGLMLPNAAISAAVIFGAVSRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTLADKMWIFAHLLAPRLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVLINVPMAAKPGTVGRILPGMDARLLAVPGIENGGRLQLKGPNIMNGY
type: DOMAIN
name: AMP-dep_synth/lig_dom
description: AMP-dependent synthetase/ligase domain

phrase: RVRVTGDVRALQGNRVLITPNHVSFIDGMLLALFLPVRPVFAVYTSISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVVQGRPVVIFPEGRISVTGSLMKIYDGAGFVAAKSGATVIPLR
type: DOMAIN
name: Plipid/glycerol_acylTrfase
description: Phospholipid/glycerol acyltransferase
Protein sequence:
MSSLAGFRNLATKIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVVISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCPIGGFLPVSDIPNPHDVELFCKINGKDQQRCRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTPAGVTKINSGDVIEFGLTDKLNSKFNVQ

Annotated regions:
phrase: KIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVVISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCPIGGFLPVSDIPNPHDVELFCKINGKDQQRCRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTPAGVTKINSGDVIEFGL
type: DOMAIN
name: Fumarylacetoacetase-like_C
description: Fumarylacetoacetase-like, C-terminal