nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MAAQDNSDIEALIALMAKLPGLGPRSARRAVLHLIRKRALVLTPLADAMSRVAETARECLNCGNVGTSDICALCEDETRANGELCVVEDVADLWAMERAGVFKGRYHVLGGTLSALDAIGPEDLRIPRLVDRVSTEGVSEVILALNATIDGQTTAHYIADQLSGRVKLTSLAQGVPIGGELDYLDDGTISAALRARKEI

Annotated regions:
phrase: GELCVVEDVADLWAMERAGVFKGRYHVLGGTLSALDAIGPEDLRIPRLVDRVSTEGVSEVILALNATIDGQTTAHYIADQLSGRVKLTSLAQGV
type: DOMAIN
name: TOPRIM_dom
description: TOPRIM domain

phrase: GELCVVEDVADLWAMERAGVFKGRYHVLGGTLSALDAIGPEDLRIPRLVDRVSTEGVSEVILALNATIDGQTTAHYIADQLSGRVKLTSLAQGVPIGGELDYLDDGTISA
type: DOMAIN
name: TOPRIM_RecR
description: RecR, TOPRIM domain

phrase: GELCVVEDVADLWAMERAGVFKGRYHVLGGTLSALDAIGPEDLRIPRLVDRVSTEGVSEVILALNATIDGQTTAHYIADQLSGRVKLTS
type: DOMAIN
name: TOPRIM_dom
description: TOPRIM domain

phrase: GELCVVEDVADLWAMERAGVFKGRYHVLGGTLSALDAIGPEDLRIPRLVDRVSTEGVSEVILALNATIDGQTTAHYIADQLSGRV
type: DOMAIN
name: TOPRIM_dom
description: TOPRIM domain
Protein sequence:
MAALKALVSGCGRLLRGLLAGPAATSWSRLPARGFREVVETQEGKTTIIEGRITATPKESPNPPNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQLNRYLTRWAPGSVKPIYKKGPRWNRVRMPVGSPLLRDNVCYSRTPWKLYH

Annotated regions:
Protein sequence:
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDENLLASQLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ

Annotated regions:
phrase: GSQRITTAKLAASVGVSEAALYRHFPSKTR
type: CONSERVED_SITE
name: DNA-bd_HTH_TetR-type_CS
description: DNA-binding HTH domain, TetR-type, conserved site

phrase: NRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDS
type: DOMAIN
name: HTH_TetR
description: DNA-binding HTH domain, TetR-type

phrase: KDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDENLLASQLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQL
type: DOMAIN
name: SlmA-like_C
description: Nucleoid occlusion factor SlmA-like, C-terminal

phrase: ALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
type: DOMAIN
name: HTH_TetR
description: DNA-binding HTH domain, TetR-type
Protein sequence:
MPKEANMASQDYATQRSSLDAQALINDAPLSRYQWLIAIVCFLIVFVDGIDTAAMGFIAPALAQDWGVDRSQLGPVMSAALGGMIIGALVSGPTADRFGRKIVLSMSMLVFGGFTLACAYSTNLDSLVIFRFLTGIGLGAAMPNATTLFSEYCPARIRSLLVTCMFCGYNLGMAIGGFISSWLIPAFGWHSLFLLGGWAPLILMLLVIFFLPESYRFLIVKGKNTKKVRQILSRIAPQKVQGVTEFHVPEEKVEAGTKKGVFGMLFSAKYVKGTVLLWVTYFMGLVMIYLLTSWLPTLMRETGASLERAAFLGGLFQFGGVLSALFIGWAMDRFNPNRIIAGFYLAAGIFAVIVGQSLSNPTLLALFILCAGIAVNGAQSSMPVLSARFYPTQCRATGVAWMSGIGRFGAVFGAWIGAVLLGNNWSFTMILSMLIIPAAAAAIAIFVKSLVAHTDAT

Annotated regions:
phrase: LTGIGLGAAMPNATTLFSEYCPARI
type: CONSERVED_SITE
name: Sugar_transporter_CS
description: Sugar transporter, conserved site

phrase: IAIVCFLIVFVDGIDTAAMGFIAPALAQDWGVDRSQLGPVMSAALGGMIIGALVSGPTADRFGRKIVLSMSMLVFGGFTLACAYSTNLDSLVIFRFLTGIGLGAAMPNATTLFSEYCPARIRSLLVTCMFCGYNLGMAIGGFISSWLIPAFGWHSLFLLGGWAPLILMLLVIFFLPESYRFLIVKGKNTKKVRQILSRIAPQKVQGVTEFHVPEEKVEAGTKKGVFGMLFSAKYVKGTVLLWVTYFMGLVMIYLLTSWLPTLMRETGASLERAAFLGGLFQFGGVLSALFIGWAMDRFNPNRIIAGFYLAAGIFAVIVGQSLSNPTLLALFILCAGIAVNGAQSSMPVLSARFYPTQCRATGVAWMSGIGRFGAVFGAWIGAVLLGNNWSFTMILSMLIIPAAAAAIAIFVKSLVAHT
type: DOMAIN
name: MFS_dom
description: Major facilitator superfamily domain

phrase: SGPTADRFGRKIVLSM
type: CONSERVED_SITE
name: Sugar_transporter_CS
description: Sugar transporter, conserved site
Protein sequence:
MWGSGELLVAWFLVLAADGTTEHVYRPSRRVCTVGISGGSISETFVQRVYQPYLTTCDGHRACSTYRTIYRTAYRRSPGVTPARPRYACCPGWKRTSGLPGACGAAICQPPCGNGGSCIRPGHCRCPVGWQGDTCQTDVDECSTGEASCPQRCVNTVGSYWCQGWEGQSPSADGTRCLSKEGPSPVAPNPTAGVDSMAREEVYRLQARVDVLEQKLQLVLAPLHSLASRSTEHGLQDPGSLLAHSFQQLDRIDSLSEQVSFLEEHLGSCSCKKDL

Annotated regions:
phrase: DVDECSTGEASCPQRCVNTVGSYW
type: CONSERVED_SITE
name: EGF_Ca-bd_CS
description: EGF-like calcium-binding, conserved site

phrase: GAAICQPPCGNGGSCIRPGHCRCPVGWQGDTC
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: DVDECSTGEASCPQRCVNTVGSYWCQGWEGQSPSADGTR
type: DOMAIN
name: NOTCH1_EGF-like
description: NOTCH1 EGF-like calcium-binding domain

phrase: SRRVCTVGISGGSISETFVQRVYQPYLTTCDGHRACSTYRTIYRTAYRRSPGVTPARPRYACCPGWKRTSGLPGACG
type: DOMAIN
name: EMI_domain
description: EMI domain

phrase: ECSTGEASCPQRCVNTVGSYWCQGWEGQSPSADGTRC
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: ICQPPCGNGGSCIRPGHCRCPVGWQGDTC
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: RVCTVGISGGSISETFVQRVYQPYLTTCDGHRACSTYRTIYRTAYRRSPGVTPARPRYACCPGWK
type: DOMAIN
name: EMI_domain
description: EMI domain

phrase: DVDECSTGEASCPQRCVNTVGSYWCQGWEGQSPSADGTRC
type: DOMAIN
name: EGF-like_Ca-bd_dom
description: EGF-like calcium-binding domain

phrase: CRCPVGWQGDT
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain

phrase: CRCPVGWQGDT
type: DOMAIN
name: EGF-like_dom
description: EGF-like domain
Protein sequence:
MPGRERRDGGRSADDNQKKNDRRGGRRDDRRNQQQDERSQYIERVVTINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIQKGAEEARKNFFRVPMVAGTITHPVQGEAAAGIVMMRPAAPGTGVIAGGAARPVLECAGVQDILCKSLGSDNAINVVHATVAGLKQLNRPEEVAARRGKTLEEVAPARMLRARAGQEA

Annotated regions:
phrase: GRRFSFTALVIVGDGKGMVGVGYGKAKEVPAA
type: CONSERVED_SITE
name: Ribosomal_uS5_N_CS
description: Small ribosomal subunit protein uS5, N-terminal, conserved site

phrase: ERVVTINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIQKGAEEARKNFFRV
type: DOMAIN
name: Ribosomal_uS5_N
description: Small ribosomal subunit protein uS5, N-terminal

phrase: YIERVVTINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIQKGAEEARKNFFR
type: DOMAIN
name: Ribosomal_uS5_N
description: Small ribosomal subunit protein uS5, N-terminal

phrase: EAAAGIVMMRPAAPGTGVIAGGAARPVLECAGVQDILCKSLGSDNAINVVHATVAGLKQLNRPEEVAAR
type: DOMAIN
name: Ribosomal_uS5_C
description: Small ribosomal subunit protein uS5, C-terminal
Protein sequence:
MNDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRISDLARDFWNAPIEVQFVLDPKAGQRSPAGATPLAPRAPLPSANPAPVGPGPACAPAVDAHAPAPAGMNAATAAAVAAAQAAQAAQANAAALNADEAADLDLPSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLLTVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTLKG

Annotated regions:
phrase: SVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRK
type: DOMAIN
name: DnaA_C
description: Chromosomal replication initiator, DnaA C-terminal

phrase: VENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRK
type: DOMAIN
name: DnaA_C
description: Chromosomal replication initiator, DnaA C-terminal

phrase: DFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRISDLA
type: DOMAIN
name: DnaA_N_dom
description: DnaA N-terminal domain

phrase: MRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEA
type: DOMAIN
name: Hda_lid
description: Hda, lid domain

phrase: SYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPP
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: LNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLT
type: DOMAIN
name: DnaA_dom
description: Chromosomal replication initiator protein DnaA, ATPAse domain

phrase: VENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQT
type: DOMAIN
name: DnaA_C
description: Chromosomal replication initiator, DnaA C-terminal

phrase: IGELFGGRDHTTVLHAVRK
type: CONSERVED_SITE
name: Chromosome_initiator_DnaA_CS
description: Chromosomal replication control, initiator DnaA, conserved site
Protein sequence:
MSGVEEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADGA

Annotated regions:
phrase: DFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS
type: DOMAIN
name: Sm_dom_euk/arc
description: Sm domain, eukaryotic/archaea-type

phrase: TPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNM
type: DOMAIN
name: Sm
description: Sm domain

phrase: DFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
type: DOMAIN
name: Sm_dom_euk/arc
description: Sm domain, eukaryotic/archaea-type
Protein sequence:
MTAPTPEFRNKKQRKQQVKLRTPGKAIAKYVRMSPRKVRLVVDVIRGKSVSDAEAILRFLPKSASEPVAKVLNSAKHNALHNDEMLEDRLVITAAYVDAGPTLKRLIPRARGSANILKKRTSHITIIVGERNDTRGGKR

Annotated regions:
phrase: KRLIPRARGSANILKKRTSHITII
type: CONSERVED_SITE
name: Ribosomal_uL22_CS
description: Large ribosomal subunit protein uL22, conserved site
Protein sequence:
MSMGLEIAGTSLAVLGWLSTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFLLAALLTLVPVSWSANTIIRDFYNPLVPDAQKREMGAGLYVGWAAAALQLLGGALLCCSCPPRDKKYAPTKIVYSAPRSAGPGTSTAYDRKDYV

Annotated regions:
phrase: GLWMNCVVQSTGQMQ
type: CONSERVED_SITE
name: Claudin_CS
description: Claudin, conserved site
Protein sequence:
MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACRAARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLASLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRTLLAPRLLQAGTSLLTPGIIEMTGVGGVPDEEVFGPFLRVWRYDTFDEAIRMANNTRFGLFCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGNHRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR

Annotated regions:
phrase: LEMGGNN
type: CONSERVED_SITE
name: Ald_DH_CS_GLU
description: Aldehyde dehydrogenase, glutamic acid active site

phrase: FVTAGQRCTCA
type: CONSERVED_SITE
name: Ald_DH_CS_CYS
description: Aldehyde dehydrogenase, cysteine active site

phrase: WITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACRAARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLASLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRTLLAPRLLQAGTSLLTPGIIEMTGVGGVPDEEVFGPFLRVWRYDTFDEAIRMANNTRFGLFCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGNHRPSAWY
type: DOMAIN
name: Aldehyde_DH_dom
description: Aldehyde dehydrogenase domain
Protein sequence:
MGVCVFFPLCLPCPGALTYIREAQFISSWTPADPRHKQLKMFLQRFVTVGGAAIGARSTMGAMGAIGAIGAKGTMNNIGRRMYHPKVIEHYTHPRNVGSMDKTLPNVGTGLVGAPACGDVMRLQIKVNDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRTSTTTLH

Annotated regions:
phrase: MYHPKVIEHYTHPRNVGSMDKTLPNVGTGLVGAPACGDVMRLQIKVNDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKA
type: DOMAIN
name: NIF_FeS_clus_asmbl_NifU_N
description: NIF system FeS cluster assembly, NifU, N-terminal

phrase: AKGTMNNIGRRMYHPKVIEHYTHPRNVGSMDKTLPNVGTGLVGAPACGDVMRLQIKVNDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRTS
type: DOMAIN
name: NIF_FeS_clus_asmbl_NifU_N
description: NIF system FeS cluster assembly, NifU, N-terminal

phrase: MYHPKVIEHYTHPRNVGSMDKTLPNVGTGLVGAPACGDVMRLQIKVNDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKR
type: DOMAIN
name: NIF_FeS_clus_asmbl_NifU_N
description: NIF system FeS cluster assembly, NifU, N-terminal
Protein sequence:
MDQILNKENTGINLPANPIKNGVPTNSVLKKPLGNLDNVMHQTPGITPFKSTSLKLEGSIAKLSLRKAPKQNVVSRDREEVRYKTNSCFLGAYVLNCEYRVVNLFNYTDFPNEKCLKNCSKPVTETWSENQEGYEGLLDQLYLDLRTLENNLENRCLPPLDFTDLPYIYNTENMEPAEPEYLLNLYPPLPNLEGIDVLF

Annotated regions:
Protein sequence:
MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKLLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPDLLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIIVMHKGTVFLQGSAEEVFSHADELEKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQVLRKGGHESCSS

Annotated regions:
phrase: ITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKLLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPDLLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIIVMHKGTVFLQGSAEEVFSHADELEKIGV
type: DOMAIN
name: ABC_transporter-like_ATP-bd
description: ABC transporter-like, ATP-binding domain

phrase: DVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKLLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPDLLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT
type: DOMAIN
name: ABC_transporter-like_ATP-bd
description: ABC transporter-like, ATP-binding domain

phrase: RYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKLLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPDLLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIIVMHKG
type: DOMAIN
name: ABC_transpr_CbiO/EcfA_su
description: ABC transporter, CbiO/EcfA subunit

phrase: LSGGQMRRVAIAGV
type: CONSERVED_SITE
name: ABC_transporter-like_CS
description: ABC transporter-like, conserved site

phrase: SGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKLLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPDLLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIIVMHKG
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain
Protein sequence:
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALLALGYKSTELKKVKAFFEDTNETAEQYIKSALKMLMK

Annotated regions:
phrase: LKLISVSGIGPTTALAIVA
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: KYLMKFPKIGKKTAQQMVL
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: LDEAMEALLALGYKSTELKKVKAFFEDTNETAEQYIKSAL
type: DOMAIN
name: RuvA_C
description: Holliday junction DNA helicase RuvA, C-terminal

phrase: QLDEAMEALLALGYKSTELKKVKAFFEDTNETAEQYIKSALKML
type: DOMAIN
name: RuvA_C
description: Holliday junction DNA helicase RuvA, C-terminal

phrase: MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLF
type: DOMAIN
name: DNA_helicase_Holl-junc_RuvA_I
description: DNA helicase, Holliday junction RuvA type, domain I, bacterial
Protein sequence:
MESNHKSGDGLSGTQKEAALRALIQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRGYLAYTGLGRGYQVKGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAYVDEAKTYAAEYTLQTLGIPTDGGDAGTMATAAAVATAFPGYAVPNATAPVSAAQLKQAVTLGQDLAAYTTYEVYPTFAVTARGDGYGAF

Annotated regions:
phrase: CRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAE
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCA
type: DOMAIN
name: ACF_RRM1
description: ACF, RNA recognition motif 1

phrase: KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: CEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: KLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAYVDEAKTYAAEYTLQTLGI
type: DOMAIN
name: A1CF_DSRM
description: A1CF, double-stranded RNA binding domain

phrase: RLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: LFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRK
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNG
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain
Protein sequence:
MVLGGLMKLFDEFKAFVMRGNVVDLAVGVIIGAAFGKIVTSLVNDIFMPIIGMIIGNIDFSSLVIKLGEPVEGAEQAAIRYGMFIQEIVNFLIIALCVFVAIKLINKLQKKKEEASAPAPGPTKEEVLLTEIRDALNKIAEK

Annotated regions:
phrase: RGNVVDLAVGVII
type: CONSERVED_SITE
name: Mechanosensitive_channel_CS
description: Large-conductance mechanosensitive channel, conserved site
Protein sequence:
MEEAILLNQTSLVTYFRLRGLSVNHKARIAMFSMFLIFYVLTLIGNVLIVITIIYDHRLHTPMYFFLSNLSFIDVCHSTVTVPKMLRDVWSEEKLISFDACVTQMFFLHLFACTEIFLLTVMAYDRYVAICKPLQYMIVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLPYCGPDEIDNFFCDVPQVIKLACIDTHVIEILIVSNSGLISVVCFVVLVVSYAVILVSLRQQISKGKRKALSTCAAHLTVVTLFLGHCIFIYSRPSTSLPEDKVVSVFFTAVTPLLNPIIYTLRNEEMKSALNKLVGRKERKEEK

Annotated regions:
phrase: GNVLIVITIIYDHRLHTPMYFFLSNLSFIDVCHSTVTVPKMLRDVWSEEKLISFDACVTQMFFLHLFACTEIFLLTVMAYDRYVAICKPLQYMIVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLPYCGPDEIDNFFCDVPQVIKLACIDTHVIEILIVSNSGLISVVCFVVLVVSYAVILVSLRQQISKGKRKALSTCAAHLTVVTLFLGHCIFIYSRPSTSLPEDKVVSVFFTAVTPLLNPII
type: DOMAIN
name: GPCR_Rhodpsn_7TM
description: GPCR, rhodopsin-like, 7TM
Protein sequence:
MLKDEVIKQISTPLTSPAFPRGPYKFHNREYFNIVYRTDMDALRKVVPEPLEIDEPLVRFEIMAMHDTSGLGCYTESGQAIPVSFNGVKGDYLHMMYLDNEPAIAVGRELSAYPKKLGYPKLFVDSDTLVGTLDYGKLRVATATMGYKHKALDANEAKDQICRPNYMLKIIPNYDGSPRICELINAKITDVTVHEAWTGPTRLQLFDHAMAPLNDLPVKEIVSSSHILADIILPRAEVIYDYLK

Annotated regions:
Protein sequence:
MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF

Annotated regions:
phrase: KAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTL
type: DOMAIN
name: Ribosomal_eL27_KOW
description: Large ribosomal subunit protein eL27, KOW domain

phrase: GKNQWFFSKLR
type: CONSERVED_SITE
name: Ribosomal_eL27_CS
description: Large ribosomal subunit protein eL27, conserved site
Protein sequence:
MSQPPIGGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAGTKLNSVRQQQLQQQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEMRHELERANKNCRILQYRLRKAERKRLRYAQTGEIDGELLRSLEQDLKVAKDVSVRLHHELENVEEKRTTTEDENEKLRQQLIEVEIAKQALQNELEKMKELSLKRRGSKDLPKSEKKAQQTPTEEDNEDLKCQLQFVKEEAALMRKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEANILGRKIVELEVENRGLKAELDDLRGDDFNGSANPLMREQSESLSELRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKYKSGGHDSARHHDNAKTEALQEELKAARLQINELSGKVMQLQYENRVLMSNMQRYDLASHLGIRGSPRDSDAESDAGKKESDDDSRPPHRKREGPIGGESDSEEVRNIRCLTPTRSFYPAPGPWPKSFSDRQQMKDIRSEAERLGKTIDRLIADTSTIITEARIYVANGDLFGLMDEEDDGSRIREHELLYRINAQMKAFRKELQTFIDRLEVPKSADDRGAEEPISVSQMFQPIILLILILVLFSSLSYTTIFKLVFLFTLFFVL

Annotated regions:
phrase: SLSELRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKYKSGGHDSARHHDNAKTEALQEELKAARLQINELSGKVMQLQYENRV
type: DOMAIN
name: SOGA_CC
description: SOGA, coiled-coil domain

phrase: DNEDLKCQLQFVKEEAALMRKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEANILGRKIVELEVENRG
type: DOMAIN
name: SOGA_CC
description: SOGA, coiled-coil domain
Protein sequence:
MSKFVKTAIAAAMVMGAFTSTATIAAGNNGTARFYGTIEDSVCSIVPDDHKLEVDMGDIGAEKLKNNGTTTPKNFQIRLQDCVFDTQETMTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSYKSGMGIDQKIVKDTATNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL

Annotated regions:
phrase: FYGTIEDSVCSIVPDDHKLEVDMGDIGAEKLKNNGTTTPKNFQIRLQDCVFDTQETMTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSYKSGMGIDQKIVKDTATNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQIT
type: DOMAIN
name: Adhesion_dom_fimbrial
description: Fimbrial-type adhesion domain
Protein sequence:
MNLLIQGGRVIDPSQGIDEVLDILVENGAVKELGKGVKAPSGTETIDASGLIVTPGLIDMHVHLRDPGHEYKEDIVSGTKAAAAGGFTSVACMPNTKPVNDNKAVTSYIIAKAKAEGSVNVFPVGSITQGSKGELLSEMGELKESGCVAVSDDGHPVTNSELMRRALEYAKGMGIMVISHAEDLSLVGAGVMNEGFVSTELGLKGIPWAAEDAATARDVYLAEFTDSPLHIAHVSTKGSLRIIRNAKARGVKVTCETAPHYFSLTDDAVRGYDTNAKMNPPLRTADDVTAVKEALKDGTIDAIATDHAPHHIDEKDLEFNEALNGIVGLETSLTLSLRLVEEGVLTLPVLVDKMACNPAKILGIDRGTLKPGSVADITVIDPKATWTVDADKLASKSKNSPFLGWEVKGAAAFTIVGGKVVYKR

Annotated regions:
phrase: IVTPGLIDMHVHLRDPGHEYKEDIVSGTKAAAAGGFTSVACMPNTKPVNDNKAVTSYIIAKAKAEGSVNVFPVGSITQGSKGELLSEMGELKESGCVAVSDDGHPVTNSELMRRALEYAKGMGIMVISHAEDLSLVGAGVMNEGFVSTELGLKGIPWAAEDAATARDVYLAEFTDSPLHIAHVSTKGSLRIIRNAKARGVKVTCETAPHYFSLTDDAVRGYDTNAKMNPPLRTADDVTAVKEALKDGTIDAIATDHAPHHIDEKDLEFNEALNGIVGLETSLTLSLRLVEEGVLTLPVLVDKMACNPAKILGIDRGTLKPGSVADITVIDPKATWTVDADKLASKSKNSPFLGWEVKGAAAFTIVGGKV
type: DOMAIN
name: Amidohydro-rel
description: Amidohydrolase-related

phrase: ATDHAPHHIDE
type: CONSERVED_SITE
name: Dihydroorotase_CS
description: Dihydroorotase, conserved site

phrase: DMHVHLRD
type: CONSERVED_SITE
name: Dihydroorotase_CS
description: Dihydroorotase, conserved site
Protein sequence:
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTIYQLRALTEQQPELIPHIAHALLMADYFSYRLTGEMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLSGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHSTRQTKELCA

Annotated regions:
phrase: VAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTIYQLRALTEQQPELIPHIAHALLMADYFSYRLTGEMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASA
type: DOMAIN
name: FGGY_N
description: Carbohydrate kinase FGGY, N-terminal

phrase: AYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLM
type: DOMAIN
name: FGGY_C
description: Carbohydrate kinase FGGY, C-terminal
Protein sequence:
MKNPKMTVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLAMSDMPKFYERVFQYRFNESDGALAGHPLGNLIIAGISEMQGSTYNAIQILTKFFHITGKIYPSSEQALTLHAVFKDGHEVAGESSIAKYPGMIDHVYVTNTYNDQKPQASRKVVEAILESDMIVLGPGSLFTSILPNLVIPEIKEALRQTKAEVVYICNIMTQYGETEQFSDADHVAVLNQHLGRDLIDTVLVNVAKVPQAYMNSNKFDEYLVQVDHDFAGLCRAAKRVISSYFLRLENGGAFHDGNLVVEELMNLVRIVKQ

Annotated regions:
Protein sequence:
MSFRINTNIAALNAHSIGVQTNRNIAGSLEKLSSGLRINKAADDASGMAIADSLRSQSESLGQAVRNANDAIGMIQIADKAMDEQLKILDTIKAKAIQAAQDGQSQESRRSLQSDIRRLMEELDNIANTTSFNGQQMLSGAFTNKEFQIGAYSNTTVKASIGPTSSDKIGHIRMETASFSGVGMLASAGGNNLTEVALNFKATDGVNSFELENVRISTSAGTGIGALSEVINRFSDKLGIRATYNVMATGTSPVMSGTVRGLVINGVRIGTVNEVRKNDSDGRLINAINSVKNQTGVEASLDITGRINLVSLDGRAISVHADGEASHVFGEGNFTGISGNNHAIVGRLTLIRTDARDIIVSGVNFSHIGLHSAQGVAETTANLRQLRGMFGADIASAAGANANKAQADINRQGIGAGVTSLKGAMIVMDMVDSARTQLDKVRSDMGSVQIQLVSTINNISTTQVNVKAAESQIRDVDFAAESANFSKNNILAQSGSFALAQANAVQQNVLRLLQ

Annotated regions:
phrase: LVINGVRIGTVNEVRKNDSDGRLINAINSVKNQTGVEASLDITGRINLV
type: CONSERVED_SITE
name: Flagellin_hook_IN_motif
description: Flagellin hook, IN motif

phrase: LNFKATDGVNSFELENVRISTSAGTGIGALSEVINRFSDKLGIRATYNVMATGTSPVM
type: CONSERVED_SITE
name: Flagellin_hook_IN_motif
description: Flagellin hook, IN motif

phrase: MDMVDSARTQLDKVRSDMGSVQIQLVSTINNISTTQVNVKAAESQIRDVDFAAESANFSKNNILAQSGSFALAQANAVQQNVLRL
type: DOMAIN
name: Flagellin_C
description: Flagellin, C-terminal domain

phrase: INTNIAALNAHSIGVQTNRNIAGSLEKLSSGLRINKAADDASGMAIADSLRSQSESLGQAVRNANDAIGMIQIADKAMDEQLKILDTIKAKAIQAAQDGQSQESRRSLQSDIRRLMEELDNIANTTSFNGQQMLSGAF
type: DOMAIN
name: Flagellin_N
description: Flagellin, N-terminal domain

phrase: RINKAADDASGMAIADS
type: DOMAIN
name: Flagellin_N
description: Flagellin, N-terminal domain

phrase: QIADKAMDEQLKILDTIKA
type: DOMAIN
name: Flagellin_N
description: Flagellin, N-terminal domain

phrase: SLQSDIRRLMEELDNIANTTSFN
type: DOMAIN
name: Flagellin_N
description: Flagellin, N-terminal domain
Protein sequence:
MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDKVTQYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE

Annotated regions: