nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MRVTGIRKNCQHLWRWGTLLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNGMVNQMHEDVIGLWDQSLKPCVKLTPLCVTLECRNVDSKNVSSNGTTNDEMKNCSFNATTELRDRNQRVHALFYRLDIVPLNSSGNSSEYRLINCNTSAITQACPKVTFDPIPIHYCAPAGFAILKCNDKVFNGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSLSEGEIIIRSENLTNNVKTIIVHLNQSVEIECTRPNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISERQWKETLQRVSKKLKEHFQNKTIKFEPPSGGDLEITMHSFNCRGEFFYCNTSGLFNGTYNETYMSNGTESNSSSVITIPCRIKQIINMWQEVGRAMYAPPIAGNITCKSNITGLLLVRDGGIDSNKTNDTEIFRPGGGDMKDNWRSELYKYKVVEIKPLGIAPTKAKRRVVGREKRAVGIGAVFLGFLGVAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICPTAVPWNSSWSNKSLHEIWDNMTWMQWDKEISNYTNTIYRLLEDSQSQQERNEKDLLALDSWNNLWNWFDITSWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQIPIHQQREPDRPERIEEEGGEQGRDRSVRLVSGFLALAWDDLRNLCLFSYHQLRD

Annotated regions:
phrase: VQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICPTAVPWNSSWSNKSLHEIWDNMTWMQWDKEISNYTNTIYRLLEDSQSQQERNEKDLLALD
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: MGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICPTAVPWNSSWSNKSLHEIWDNMTWMQWDKEISNYTNTIYRLLEDSQSQQERNEKDLLALDSWNNLWNWFDITSWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQIP
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: NVSSNGTTNDEMKNCSFNATTELRDRNQRVHALFYRLDIVPLNSSGNSSEYRLINCNTSAITQACPKVTFDPIPIHYCAPAGFAILKCNDKVFNGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSLSEGEIIIRSENLTNNVKTIIVHLNQSVEIECTRPNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISERQWKETLQRVSKKLKEHFQNKTIKFEPPSGGDLEITMHSFNCRGEFFYCNTSGLFNGTYNETYMSNGTESNSSSVITIPCRIKQIINMWQEVGRAMYAPPIAGNITCKSNITGLLLVRDGGIDSNKTNDTEIFRPGGGDMKDNWRSELYKYKVVEIKPLGIAPTKAKRRVVGREK
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120

phrase: LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNGMVNQMHEDVIGLWDQSLKPCVKLTPLCVTLECRNVDSKNVSSNG
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120
Protein sequence:
MKGISRMSIREVSEVLNTEPSEEFLKACAQDERLGIQNLIVRYYKEWEARLVEAERIEALLREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELPSLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRRCGVSPIHRRSFAPVQQQLDIV

Annotated regions:
phrase: AGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELPSLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRRCGVSPIHRRSFA
type: DOMAIN
name: RNase_HII/HIII_dom
description: Ribonuclease HII/HIII domain

phrase: LHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELPSLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRRCGVSPIHRRSFAPVQQQLDI
type: DOMAIN
name: RNase_HII/HIII_dom
description: Ribonuclease HII/HIII domain
Protein sequence:
MPKNKSHSGASRRFRVTGTGKIMRRRTNKNHLLEHKPSKRTRRLSVDVRVSPADARKIRKLLG

Annotated regions:
phrase: KSHSGASRRFRVTGTGKIMRRRTNKN
type: CONSERVED_SITE
name: Ribosomal_bL35_CS
description: Large ribosomal subunit protein bL35, conserved site
Protein sequence:
MGETEEAIQLINEEKEFNSSTLQYFQKCVKERDVGVDYHVISVFGSQSSGKSTLLNALFHTQFDTMNAKVKRQQTTKGIWLGHTTRIATLENSLTPVKDLFVLDVEGSDGAERGEDQDFERKAALFAIAISEVLIVNMWEQQVGLYQGNNMALLKTVFEVNLSLFGHQNDHKVLLLFVIRDHVGVTPLSSLQETLEAELNAIWSDLAKPEGCENSSLYDFFDLKFTALAHKVLQPDLFMENVKELGNKFSSETPGKSFFKPEYHHNLPLDGWTMYAGNCWNQIETNKDLDLPTQQILVAKFKTEEISNQALALLLENYPVDLHCRELSDLAGKLQELKSLCLQEYDTYASRYAKPVYMDNRRDLSHKIENKFKETISKFLDVQKEDLLSQVEKDLTERSRSTPFVTKMKEARKKAFDAFEELLLQFTKLELVASLSDENEAFSIALDEACSNQSRKQLKQSVNRISKSVSSGIKEDIFFLLAHPELDLWDKVMEKFNEIVSDSTERYAVDDEKFDFQVGLSEEENQKVYKKVRSNAWTNLYEFVHGYLNEDNVVSILRDRFENKFRYDEHDSPRLWRNEEEIDNAFRVAKEHALEVLNVLSLASNSDHVEIVPDVPLSSGLDDEELEGEYEDEEGIYHEKGFAHILTASQRERAVQKFKRQANTTVIEAKRSIIRTTTHIPLYVYALLVVLGWNEFMIVIRNPLFVTLLVILSVTAYFVHKLNLWAPILALVNSAVSETKALARNKLKVILDDDSSSSSKASKEPTEEYEMQDLAKSSTTGTG

Annotated regions:
phrase: DLAGKLQELKSLCLQEYDTYASRYAKPVYMDNRRDLSHKIENKFKETISKFLDVQKEDLLSQVEKDLTERSRSTPFVTKMKEARKKAFDAFEELLLQFTKLELVASLSDENEAFSIALDEACSNQSRKQLKQSVNRISKSVSSGIKEDIFFLLAHPELDLWDKVMEKFNEIVSDSTERYAVDDEKFDFQVGLSEEENQKVYKKVRSNAWTNLYEFVHGYLNEDNVVSILRDRFENKFRYDEHDSPRLWRNEEEIDNAFRVAKEHALEVLNVLSLASNSDHVEIVPDVPLSSGLDDEELEGEYEDEEGIYHEKGFAHILTASQRERAVQKFKRQANTTVIEAKRSIIRTTTHIPLYVYALLVVLGWNEFMIVIRNPLFVTLLVILSVTAYFVHKLNLWAPILALVNSAVS
type: DOMAIN
name: Sey1/RHD3-like_3HB
description: Sey1/RHD3-like, three-helix bundle domain

phrase: GVDYHVISVFGSQSSGKSTLLNALFHTQFDTMNAKVKRQQTTKGIWLGHTTRIATLENSLTPVKDLFVLDVEGSDGAERGEDQDFERKAALFAIAISEVLIVNMWEQQVGLYQGNNMALLKTVFEVNLSLFGHQNDHKVLLLFVIRDHVGVTPLSSLQETLEAELNAIWSDLAKPEGCENSSLYDFFDLKFTALAHKVLQPDLFMENVKELGNKFSSETPGKSFFKPEYH
type: DOMAIN
name: G_GB1_RHD3_dom
description: GB1/RHD3-type guanine nucleotide-binding (G) domain
Protein sequence:
MNDLKLLRSKLSTETIEELYKNLNLLKKELFNLRFQQALGDLKNTSRFSLVKKSIARIKTELTKRANSEEY

Annotated regions:
phrase: NTSRFSLVKKSIAR
type: CONSERVED_SITE
name: Ribosomal_uL29_CS
description: Large ribosomal subunit protein uL29, conserved site
Protein sequence:
MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGETKK

Annotated regions:
phrase: ARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIA
type: DOMAIN
name: NusB_RsmB_TIM44
description: NusB/RsmB/TIM44
Protein sequence:
MTEQAQNTTHFGFQTVAEEEKAGMVHGVFTRVASRYDLMNDLMSGGIHRVWKDAMMDWLAPQPWQRLLDVAGGTGDISFRFLKRAPGAQAVVCDMTESMLVEGRKRADAAALADSLDWVTGDAMALPFADNSFDVVTNAFGTRNITRIQDWLDEAFRVLKPGGRLMILEFSQLPNPAMQWAYDRYSFNVIPVMGQIVANDRASYQYLVESIRKFPDQETFAGMIRKAGFGQVKYRNLSMGIAALHSGWKL

Annotated regions:
phrase: YDLMNDLMSGGIHRV
type: CONSERVED_SITE
name: UbiE/COQ5_MeTrFase_CS
description: UbiE/COQ5 methyltransferase, conserved site

phrase: RVLKPGGRLMILEF
type: CONSERVED_SITE
name: UbiE/COQ5_MeTrFase_CS
description: UbiE/COQ5 methyltransferase, conserved site
Protein sequence:
MTSSSSDRSPLASQLGEVPAPLYARVKQMIVSQIQSGAWPPHHRVPSESELVSQLGFSRMTINRALRELTSDGLLVRMQGVGTFVAEPKGQSALFEVHNIADEIAARGHRHRCQVITLGEEVAGPERALALDVREGQRVFHSLIVHYENDIPVQIEDRYVNAAVAPDYLKQDFTRQTPYAYLTQVAPLTEGEHVVEAILAEPAECKLLQIERGEPCLLIRRRTWSGRVAVTAARLLHPGSRHRLEGRFSS

Annotated regions:
phrase: VKQMIVSQIQSGAWPPHHRVPSESELVSQLGFSRMTINRALRELTSDGLLVRMQGVGTF
type: DOMAIN
name: Tscrpt_reg_HTH_GntR
description: Transcription regulator HTH, GntR

phrase: LYARVKQMIVSQIQSGAWPPHHRVPSESELVSQLGFSRMTINRALRELTSDGLLVRMQGVGTF
type: DOMAIN
name: Tscrpt_reg_HTH_GntR
description: Transcription regulator HTH, GntR

phrase: APLYARVKQMIVSQIQSGAWPPHHRVPSESELVSQLGFSRMTINRALRELTSDGLLVRMQGVGTFVAE
type: DOMAIN
name: Tscrpt_reg_HTH_GntR
description: Transcription regulator HTH, GntR

phrase: PLYARVKQMIVSQIQSGAWPPHHRVPSESELVSQLGFSRMTINRALRELTSDGLLVRMQGVGTFV
type: DOMAIN
name: Tscrpt_reg_HTH_GntR
description: Transcription regulator HTH, GntR

phrase: VPSESELVSQLGFS
type: DOMAIN
name: Tscrpt_reg_HTH_GntR
description: Transcription regulator HTH, GntR

phrase: RMTINRALRELTSDGL
type: DOMAIN
name: Tscrpt_reg_HTH_GntR
description: Transcription regulator HTH, GntR

phrase: ARGHRHRCQVITLGEEVAGPERALALDVREGQRVFHSLIVHYENDIPVQIEDRYVNAAVAPDYLKQDFTRQTPYAYLTQVAPLTEGEHVVEAILAEPAECKLLQIERGEPCLLIRRRTWSGRVAVTAARLLHPGSRH
type: DOMAIN
name: UTRA
description: UbiC transcription regulator-associated

phrase: ARGHRHRCQVITLGEEVAGPERALALDVREGQRVFHSLIVHYENDIPVQIEDRYVNAAVAPDYLKQDFTRQTPYAYLTQVAPLTEGEHVVEAILAEPAECKLLQIERGEPCLLIRRRTWSGRVAVTAARLLHPGSRH
type: DOMAIN
name: UTRA
description: UbiC transcription regulator-associated
Protein sequence:
MDDSVNTRYPILLVHGLFGFDRIGSHHYFHGIKQALNECGASVFVPIISAANDNEARGDQLLKQIHNLRRQVGAQRVNLIGHSQGALTARYVAAIAPELIASVTSVSGPNHGSELADRLRLAFVPGRLGETVAAALTTSFSAFLSALSGHPRLPQNALNALNALTTDGVAAFNRQYPQGLPDRWGGMGPAQVNAVHYYSWSGIIKGSRLAESLNLLDPLHNALRVFDSFFTRETRENDGMVGRFSSHLGQVIRSDYPLDHLDTINHMARGSRRRINPVELYIEHAKRLKEAGL

Annotated regions:
phrase: YPILLVHGLFGFDRIGSHHYFHGIKQALNECGASVFVPIISAANDNEARGDQLLKQIHNLRRQVGAQRVNLIGHSQGALTARYVAAIAPELIASVTSVSGPNHGSELADRLRLAFVPGRLGETVAAALTTSFSAFLSALSGHPRLPQNALNALNALTTDGVAAFNRQYPQGLPDRWGGMGPAQVNAVHYYSWSGIIKGSRLAESLNLLDPLHNALRVFDSFFTRETRENDGMVGRFS
type: DOMAIN
name: AB_hydrolase_1
description: Alpha/beta hydrolase fold-1
Protein sequence:
MNKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKVELQGKRLEIEHSVPKKQRSRKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQITQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQPVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQHQKGQSNLAQARRK

Annotated regions:
phrase: IRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHAL
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: LYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKVELQGKR
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: KLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKVELQGKRLEI
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: KIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: MNKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKVELQGKRLEIEHSVPK
type: DOMAIN
name: IGF2BP1_RRM1
description: IGF2BP1, RNA recognition motif 1

phrase: RKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIP
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRI
type: DOMAIN
name: KH_dom_type_1
description: K Homology domain, type 1

phrase: KILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEI
type: DOMAIN
name: KH_dom_type_1
description: K Homology domain, type 1

phrase: HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR
type: DOMAIN
name: KH_dom_type_1
description: K Homology domain, type 1

phrase: LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMIL
type: DOMAIN
name: KH_dom_type_1
description: K Homology domain, type 1

phrase: RKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIP
type: DOMAIN
name: IGF2BP1_RRM2
description: IGF2BP1, RNA recognition motif 2

phrase: NKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKVELQGKRLEIEHSV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDIL
type: DOMAIN
name: KH_dom
description: K Homology domain

phrase: DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV
type: DOMAIN
name: KH_dom
description: K Homology domain

phrase: EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRIYGKL
type: DOMAIN
name: KH_dom
description: K Homology domain

phrase: VDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMILEIM
type: DOMAIN
name: KH_dom
description: K Homology domain
Protein sequence:
MSLFALGLNHKSAPVNIREQIVFAPDAVTAALQHLRAHTTAREAAILSTCNRTELYVRMDDRAPEMLGEWLARYHRLDPEWLRDYLYLHEGAGAVRHLMRVSAGLDSLVLGEPQILGQAKIAYQGAIDAGTMGRVLDRLFQHAFSVAKQVRTDTGIGANPVSVAFAAVTLARQIFDDFQNRTALLIGAGETIELVARHLREQGLKNLIVANRNLERARQLVELEGGEAIPLSEIPTRLPEADVLVASTASPLPILGKGTVERAVRKRRHRPMFMLDLAVPRDIEPEAGNLDDVYLYTVDDLREVIAENRRSREEAAHQAEEIVQRQVDQFLSWRRAQQAVASICDFRERGHAHARELLQRANRRLRCGEPPERVLAWLSHTLTNRLLHAPTVGLREAAEAGDRERIELARTLLQIENANEDTRESVDKEQTGTTQGAARGDQRSTG

Annotated regions:
phrase: LARQIFDDFQNRTALLIGAGETIELVARHLREQGLKNLIVANRNLERARQLVELEGGEAIPLSEIPTRLPEADVLVASTASPLPILGKGTVERAVRKRRHRPMFMLDLAVPRDIEPEAGNLDDVYLYTVDDLRE
type: DOMAIN
name: Shikm_DH/Glu-tRNA_Rdtase
description: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase

phrase: LGLNHKSAPVNIREQIVFAPDAVTAALQHLRAHTTAREAAILSTCNRTELYVRMDDRAPEMLGEWLARYHRLDPEWLRDYLYLHEGAGAVRHLMRVSAGLDSLVLGEPQILGQAKIAYQGAIDAGTMGRVLDRLFQHAFSVAKQVRTD
type: DOMAIN
name: 4pyrrol_synth_GluRdtase_N
description: Glutamyl-tRNA reductase, N-terminal

phrase: QAEEIVQRQVDQFLSWRRAQQAVASICDFRERGHAHARELLQRANRRLRCGEPPERVLAWLSHTLTNRLLHAPTVGLREAAEAGDRERIELARTLL
type: DOMAIN
name: 4pyrrol_synth_GluRdtase_dimer
description: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain
Protein sequence:
MDLSNLTLTKIQELVLTRKCKIYDILLAYKNNYELNKDINGYIEFFDDSLEIAKRYDDCLKNCELEDLPLIGMLIAVKDNISIQDKSLTCASEILKGYISPYDATVIKRLKNKGAILIGRTNMDEFAMGSTCEFSYYGATLNPLNREYVIGGSSGGSAAVVAAFQAPFSLGSDTGGSVRLPASFSGILGFKPSYGGLSRYGLASYASSFDQIGFFSHSIEDIALILKHTCGSDKMDSTSVDIFDDFYPLKIESLQGKNLAVIKELSEDLMDKNVANSFAKFKLDLLSKGINIKEVSIEEINFILSIYYIISPVEASSNLARYTGLCYGKRISEGLSLNDFYFKHRSNFLSEEVKRRIVLGNYLLSERYDSKYYAKACEILQNLIIPKFNKLFESCDFIITPTSFVKPFRLGLDFDDPVKMYYSDICTVIANLIGAPAISLPYSKDEEGLSIGMQIIGRSKKDFELLSFSKNVIRELGLNGI

Annotated regions:
phrase: GGSSGGSAAVVAAFQAPFSLGSDTGGSVRLP
type: CONSERVED_SITE
name: Amidase_CS
description: Amidase, conserved site

phrase: ILLAYKNNYELNKDINGYIEFFDDSLEIAKRYDDCLKNCELEDLPLIGMLIAVKDNISIQDKSLTCASEILKGYISPYDATVIKRLKNKGAILIGRTNMDEFAMGSTCEFSYYGATLNPLNREYVIGGSSGGSAAVVAAFQAPFSLGSDTGGSVRLPASFSGILGFKPSYGGLSRYGLASYASSFDQIGFFSHSIEDIALILKHTCGSDKMDSTSVDIFDDFYPLKIESLQGKNLAVIKELSEDLMDKNVANSFAKFKLDLLSKGINIKEVSIEEINFILSIYYIISPVEASSNLARYTGLCYGKRISEGLSLNDFYFKHRSNFLSEEVKRRIVLGNYLLSERYDSKYYAKACEILQNLIIPKFNKLFESCDFIITPTSFVKPFRLGLDFDDPVKMYYSDICTVIANLIGAPAISLPYSKDEEGLSIGMQIIGRSKKDFEL
type: DOMAIN
name: Amidase_dom
description: Amidase signature domain
Protein sequence:
MAPAKNQENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTALA

Annotated regions:
phrase: NINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDI
type: DOMAIN
name: Ribosomal_eL8/eL30/eS12/Gad45
description: Ribosomal protein eL8/eL30/eS12/Gadd45

phrase: SGKYSLGYKSTVKSLRQGKAKLII
type: CONSERVED_SITE
name: Ribosomal_eL30_CS
description: Large ribosomal subunit protein eL30, conserved site

phrase: ELGTAVGKLFRVGVVTILDA
type: CONSERVED_SITE
name: Ribosomal_eL30_CS
description: Large ribosomal subunit protein eL30, conserved site
Protein sequence:
MAKGGNKKATAAARAAANRLLADNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPHSHAGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGSWIKLTIGLGKGRKLHDKRQDEKRKQADREVKSALARY

Annotated regions:
phrase: TGIELVGTEVKS
type: CONSERVED_SITE
name: SsrA-bd_prot_CS
description: SsrA-binding protein, conserved site
Protein sequence:
MAAAAGDGTVKPLQSAMKLANGAIELDTGNRPREAYTEYLRSIHYISQVLLEEVETTKEAGETVPPDTSKMLKLAQQCLERAQSTAAKLGKTRLKPTMPAAAPIPQPAGRHRRVYSDEGGKLSPFLPPEIFQKLQGAESQSCKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWKAKLKRNPGDLSLVTSLVSHLLSLPDHPIAQLLRRLQCSVYSALYPAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPVGSPSPLGDTASGLPDKDSSFEDLEQFLGTSERQGRGRGVQPEPQLQQLKTAVEEIHNAVDRLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELYRNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLPRGGLAK

Annotated regions:
phrase: AAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVE
type: DOMAIN
name: VPS9
description: VPS9 domain

phrase: RAREAALSRSMELYRNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLPRGGL
type: DOMAIN
name: VPS9
description: VPS9 domain

phrase: PYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLPRGGL
type: DOMAIN
name: VPS9
description: VPS9 domain
Protein sequence:
MKAIDSQDLEKHTPMMRQYLTLKAENPDVLLFYRMGDFYELFYDDAKKASELLGISLTARGKSGGDPIPMAGLPYHAVEGYLAKLVQLRVSVAICEQVGDPATSKGPVERKVVRLVTPGTLTDEALLQERQDNLLAAVYHGKKGFGYATLDISSGRFVIAELESCEALEAELQRTSPAELLYSEDFSEMSLISAFEGTRRRPEWEFDFDTSQKLLLDQFGTKDLQGFGLDGARLSLQAAGCLMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTMNLQGGHSNTLATVLDNTTTPMGSRMLQRWIHEPLRDRQRIEARQSALEEILENGLYDELHPLLKSLGDVERITARLALRNARPRDFSRLKHALAILPEIQQILARCQSAHLQSLARIISEFPEELALLDSAIVDNPPMLIRDGGVLKPGYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNRVHGYYIEVSRRESDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWDQLFDLILPQLHELQLFAQGAAELDVLANFAERADTLNYQRPVLTDIPGIQIESGRHPVIEQVSQTPFIANPVTLSPARKMLIVTGPNMGGKSTYMRQVALITLMAHIGCYVPAQSATIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVANVHLDAIEHGDTIVFMHAVQDGAASKSYGLQVAALAGVPNPVILAAKHKLHHLESRDNHNTQQTDSSGVQQSMVFPDPIKSPLEEAMESIRPDELSPKQALDILYRLKDLS

Annotated regions:
phrase: NLLAAVYHGKKGFGYATLDISSGRFVIAELESCEALEAELQRTSPAELLYSEDFSEMSLISAFEGTRRRPEWEFDFDTSQKLLLDQFGTKDLQGFGLDGARLSLQAAGCLMQYVKDTQRTALPH
type: DOMAIN
name: DNA_mmatch_repair_MutS_con_dom
description: DNA mismatch repair protein MutS, connector domain

phrase: GHSNTLATVLDNTTTPMGSRMLQRWIHEPLRDRQRIEARQSALEEILENGLYDELHPLLKSLGDVERITARLALRNARPRDFSRLKHALAILPEIQQILARCQSAHLQSLARIISEFPEELALLDSAIVDNPPMLIRDGGVLKPGYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNRVHGYYIEVSRRESDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWDQLFDLILPQLHELQLFAQGAAELDVLANFAERADTLNYQRPVLTDIPGIQIESGRHPVIEQ
type: DOMAIN
name: DNA_mismatch_repair_MutS_core
description: DNA mismatch repair protein MutS, core

phrase: LIVTGPNMGGKSTYMRQVALITLMAHIGCYVPAQSATIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVANVHLDAIEHGDTIVFMHAVQDGAASKSYGLQVAALAGVPNPVILAAKHKLHHL
type: DOMAIN
name: DNA_mismatch_repair_MutS_C
description: DNA mismatch repair protein MutS, C-terminal

phrase: GYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNRVHGYYIEVSRRESDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSS
type: DOMAIN
name: DNA_mismatch_repair_MutS_clamp
description: DNA mismatch repair protein MutS, clamp

phrase: TPMMRQYLTLKAENPDVLLFYRMGDFYELFYDDAKKASELLGISLTARGKSGGDPIPMAGLPYHAVEGYLAKLVQLRVSVAICEQVGDPATSKGPVERKVVRLVTPGTLTD
type: DOMAIN
name: DNA_mismatch_repair_MutS-lik_N
description: DNA mismatch repair protein MutS-like, N-terminal

phrase: SLVLMDEIGRGTSTYD
type: DOMAIN
name: DNA_mismatch_repair_MutS_C
description: DNA mismatch repair protein MutS, C-terminal

phrase: ATRRNLELTMNLQGGHSNTLATVLDNTTTPMGSRMLQRWIHEPLRDRQRIEARQSALEEILENGLYDELHPLLKSLGDVERITARLALRNARPRDFSRLKHALAILPEIQQILARCQSAHLQSLARIISEFPEELALLDSAIVDNPPMLIRDGGVLKPGYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNRVHGYYIEVSRRESDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWDQLFDLILPQLHELQLFAQGAAELDVLANF
type: DOMAIN
name: DNA_mismatch_repair_MutS_core
description: DNA mismatch repair protein MutS, core

phrase: RKMLIVTGPNMGGKSTYMRQVALITLMAHIGCYVPAQSATIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVANVHLDAIEHGDTIVFMHAVQDGAASKSYGLQVAALAGVPNPVILAAKHKL
type: DOMAIN
name: DNA_mismatch_repair_MutS_C
description: DNA mismatch repair protein MutS, C-terminal
Protein sequence:
MTNLQDQTQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQAGGVTITLFSANIDAITSLSIGGELVFQTSVQSLILGATIYLIGFDGTAVITRAVAADNGLTAGTDNLMPFNIVIPTSAITQPITSIKLEIVTSKSGGQAGDQMSWSASGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREGATLFPVVMTTVEDAMTPKAVNSKMFAVIEGVREDLQPPSQRGSFIRTLSGHRVYGYAPDGVLPLETGGDYTVVPIDDVWDDSIMLSKDPIPPIVGNSGKLAIAYMDVFRPKVPIHVAMTGALNAYGEIESVSFRSTKLATAHRLGLKLAGPGAFDVNTGSNWATFIKRFPHNPRDWDRLPYLNLPYLPPSAGRQYDLAMAASEFKGTPELESA

Annotated regions:
phrase: LREGATLFPVVMTTVEDAMTPKAVNSKMFAVIEGVREDLQPPSQRGSFIRTLSGHRVYGYAPDGVLPLETGGDYTVVPIDDVWDDSIMLSKDPIPPIVGNSGKLAIAYMDVFRPKVPIHVAMTGALNAYGEIESVSFRSTKLATAHRLGLKLAGPGAFDVNTGSNWATFI
type: DOMAIN
name: Birna_VP4_Prtase_dom
description: Birnavirus VP4 protease domain

phrase: SNFELIPNPELAKNLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREGATLFPVVMTTVEDAMTPKAVNSKMFAVIEGVREDLQPPSQRGSFIRTLSGHRVYGYAPDGVLPLETGGDYTVVPIDDVWDDSIMLSKDPIPPIVGNSGKLAIAYMDVFRPKVPIHVAMTGALNAYGEIESVSFRSTKLATAHRLGLKLAGPGAFDVNTGSNWATFIKRFPHNPRDWDRLPYLNLPYLPPSAGRQYDLAM
type: DOMAIN
name: Birna_VP4_Prtase_dom
description: Birnavirus VP4 protease domain
Protein sequence:
MQVTETLNEGLKRGYAITIPATELEEKVNAKLAEAQPEIEMKGFRKGKVPMPLLKKQFGARLMGEVMQEAVDGAMNKHFEESGDRPALQPDVKMTNEDWKEGDDVNVEMSYEALPAIPEVDVSGVELEKLVVKAEDAAVTEALENLASSAQEFEAREEGAASEDGDQVVIDFVGKVDGEAFDGGSAEDYPLTLGSNSFIPGFEEQLVGVKAGDAKDVTVTFPEEYGAEHLAGKEAVFSCTVKEVKAPKAAEINDELAKKFGAEDLDQLKGQISERLEAEYAGAARQVMKRAALDALAELVSFDLPPSLVEAEAKQIAHQLWHEENPDVQGHDHPEIEPTDEHNKLAERRVRLGLLLAEMGQKAEVEVTDQEMTQAIMQQARQYPGQERQFFEFIQQNAQMQQQLRAPIFEDKVIDLVFDQAKVSEKEVSKEDLQKAVEALEEE

Annotated regions:
phrase: MQVTETLNEGLKRGYAITIPATELEEKVNAKLAEAQPEIEMKGFRKGKVPMPLLKKQFGARLMGEVMQEAVDGAMNKHFEESGDRPALQPDVKMTNEDWKEGDDVNVEMSYEALPAIPEVDVSGVELEKLVVKAEDAAVTEALEN
type: DOMAIN
name: Trigger_fac_ribosome-bd_bac
description: Trigger factor, ribosome-binding, bacterial

phrase: SEDGDQVVIDFVGKVDGEAFDGGSAEDYPLTLGSNSFIPGFEEQLVGVKAGDAKDVTVTFPEEYGAEHLAGKEAVFSC
type: DOMAIN
name: PPIase_FKBP_dom
description: FKBP-type peptidyl-prolyl cis-trans isomerase domain

phrase: GDQVVIDFVGKVDGEAFDGGSAEDYPLTLGSNSFIPGFEEQLVGVKAGDAKDVTVTFPEEYGAEHLAGKEAVFSCTVKEVKAPKA
type: DOMAIN
name: PPIase_FKBP_dom
description: FKBP-type peptidyl-prolyl cis-trans isomerase domain

phrase: LDQLKGQISERLEAEYAGAARQVMKRAALDALAELVSFDLPPSLVEAEAKQIAHQLWHEENPDVQGHDHPEIEPTDEHNKLAERRVRLGLLLAEMGQKAEVEVTDQEMTQAIMQQARQYPGQERQFFEFIQQNAQMQQQLRAPIFEDKVIDLV
type: DOMAIN
name: Trigger_fac_C
description: Trigger factor, C-terminal
Protein sequence:
MTSAYDKLHSTLDVKAFGRVAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEQDCVAASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAAKYDSQVLVEQWIHGPEFTIAVLRGQVLPPIALGTPHVFYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAIGIEGWGRLDVMQDEQGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVATRG

Annotated regions:
phrase: KQVWQSLGIPTPRHAVLASEQDCVAASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAAKYDSQVLVEQWIHGPEFTIAVLRGQVLPPIALGTPHVFYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAIGIEGWGRLDVMQDEQGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL
type: DOMAIN
name: ATP-grasp
description: ATP-grasp fold

phrase: HGRGGEDGSMQ
type: CONSERVED_SITE
name: D-Ala_lig_Van_CS
description: D-alanine--D-alanine ligase/VANA/B/C, conserved site

phrase: QNEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTG
type: DOMAIN
name: Dala_Dala_lig_N
description: D-alanine--D-alanine ligase, N-terminal domain

phrase: RVAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDV
type: DOMAIN
name: Dala_Dala_lig_N
description: D-alanine--D-alanine ligase, N-terminal domain

phrase: IGIEGWGRLDVMQDEQGRFWLLEVNTAP
type: CONSERVED_SITE
name: D-Ala_lig_Van_CS
description: D-alanine--D-alanine ligase/VANA/B/C, conserved site

phrase: VWQSLGIPTPRHAVLASEQDCVAASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAAKYDSQVLVEQWIHGPEFTIAVLRGQVLPPIALGTPHVFYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAIGIEGWGRLDVMQDEQGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAI
type: DOMAIN
name: Dala_Dala_lig_C
description: D-alanine--D-alanine ligase, C-terminal
Protein sequence:
MSNSWWLKPAQAIDVPMREAALARQQQLTKPAGSLAQLERLAVQLAGLQGRERPAADKLWIAIFAGDHGVVAEGVSAYPQEVTGQMLHNFVNGGAAISVLARQLSAQLDVVDLGTVAPLDLPGVRHLRIGAGTANFAHGPAMSAEQGLAALQAGRDSVLRAKAVGTELFIGGEMGIGNTTAASAVACSVLECAAPLLVGPGTGLNAEGIEHKTRVIERALALHAEQAGDPLHSLFCLGGFEIAALTGAYLACAQEGIVALVDGFICSVAALVAVRLNPSCRNWLLFGHRGAEPGHRHLLETLQAEPLLDLGLRLGEGSGAALAVPLVRLACELHNGMATFAEAAVADRPA

Annotated regions: