nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHSIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLFSCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKKHKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAESAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMDMVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLIDPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGRITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPTFPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR

Annotated regions:
phrase: SFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKKHKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCT
type: DOMAIN
name: Interferon/interleukin_rcp_dom
description: Interferon/interleukin receptor domain

phrase: RSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHSIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNT
type: DOMAIN
name: FN3_dom
description: Fibronectin type III
Protein sequence:
MVEPKIRPLGERVLVKLIEEQEVRKGGIIIPDTAKEKPQEATVIAVGPGKLDENGKRIPIEVKKGDKVLISKYGGTEVKIDGESFQILREDDILAIIEG

Annotated regions:
phrase: IRPLGERVLVKLIEEQEVRKGGII
type: CONSERVED_SITE
name: Chaprnonin_Cpn10_CS
description: Chaperonin GroES, conserved site
Protein sequence:
MKNIQKNIKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPKIKLFNNIEWHYIGQIQSNKAHIIAKNFSWCHTITNKKTAVLLNKYRPYSLPKLNTLIQINIRDNTINIDDDIETIKQLAKTINSLDNLNLRGIMAMPYFKNTYLEQIQSYKYIHLYFDILKKKYTYIDTVSLGTSHDIQAALYSGSTLLRIGSSIFDV

Annotated regions:
phrase: KLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPKIKLFNNIEWHYIGQIQSNKAHIIAKNFSWCHTITNKKTAVLLNKYRPYSLPKLNTLIQINIRDNTINIDDDIETIKQLAKTINSLDNLNLRGIMAMPYFKNTYLEQIQSYKYIHLYFDILKKKYTYIDTVSLGTSHDIQAALYSGSTLLRIGSSI
type: DOMAIN
name: Ala_racemase_N
description: Alanine racemase, N-terminal
Protein sequence:
MQTTPSIDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYLIKGSVAVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQLRSAWIKAKSPCEIAEISYKKFRQLIQVNPDILMHLSAQLARRLQNTSRQVSNLAFLDVTGRIAQTLLNLAKMPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVYGTR

Annotated regions:
phrase: IKITRQEIGQMVGCSR
type: DOMAIN
name: HTH_CRP
description: Crp-type HTH domain

phrase: ETVGRILKMLEDQHL
type: DOMAIN
name: HTH_CRP
description: Crp-type HTH domain

phrase: YPSKSTLIHAGEKAETLYYLIKGSVAVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQLRSAWIKAKSPCEIAEISYKKFRQLIQVNPDILMHLSAQLAR
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: HPDGMQIKITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVY
type: DOMAIN
name: HTH_CRP
description: Crp-type HTH domain

phrase: GRIAQTLLNLAKMPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIV
type: DOMAIN
name: HTH_CRP
description: Crp-type HTH domain

phrase: LIHAGEKAETLYYLIK
type: CONSERVED_SITE
name: cNMP-bd_CS
description: Cyclic nucleotide-binding, conserved site

phrase: ITRQEIGQMVGCSRETVGRILKM
type: CONSERVED_SITE
name: Tscrpt_reg_HTH_Crp-type_CS
description: Transcription regulator HTH, Crp-type, conserved site

phrase: FGEAGLFEEGQLRSAWIK
type: CONSERVED_SITE
name: cNMP-bd_CS
description: Cyclic nucleotide-binding, conserved site

phrase: DPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYLIKGSVAVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQLRSAWIKAKSPCEIAEISYKKFRQLIQVNPDILMH
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: MQTTPSIDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYLIKGSVAVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQLRSAWIKAKSPCEIAEISYKKFRQLIQVNPDILMHLSAQL
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain

phrase: LDVTGRIAQTLLNLAKMPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVYGT
type: DOMAIN
name: HTH_CRP
description: Crp-type HTH domain

phrase: HKYPSKSTLIHAGEKAETLYYLIKGSVAVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQLRSAWIKAKSPCEIAEISYKKFRQLI
type: DOMAIN
name: cNMP-bd_dom
description: Cyclic nucleotide-binding domain
Protein sequence:
MRANNQIHNALYLAFARQQWAELRKSVPLTLSESDLDDLRGINESISLDEVTDIYLPLSRLLNLIVGAKQQRGLVLNQFLGRVPPKRPYIISIAGSVAVGKSTTARILQALLRQWPEHPKVDLVTTDGFLYPLSELKRRGLLQRKGFPESYDMKLLVEFISKIKAGESLVHAPIYSHISYDRVADTQQAIEQPDILIIEGLNVLQTGQDTHVAIQQPFVSDFVDFSIYVDAEEPLLKEWYISRFLKFRTGAFSDPNSYFHHYSELTDDEATKIAANIWDSINGPNLNLNILPTRDRAHLILRKGTDHMMHQVLMRK

Annotated regions:
phrase: IISIAGSVAVGKSTTARILQALLRQWPEHPKVDLVTTDGFLYPLSELKRRGLLQRKGFPESYDMKLLVEFISKIKAGESLVHAPIYSHISYDRVADTQQAIEQPDILIIEGLNVLQTGQDTHVAIQQPFVSDFVDFSIYVDAEEPLLKEWYIS
type: DOMAIN
name: PRK/URK
description: Phosphoribulokinase/uridine kinase
Protein sequence:
MPGKLRVHELAKQLGITSKELLATLKDKGEFVKTASSTIEPPVVKRMQEHYGSSGSDKSDTAAKPAAAKPAAPKPAASAAPKPGAPAKPAAPAAKPAPAAPSAASAAKPGAAPKPGVQAKPAAAAKPGAPAKPAAPAAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPAAKPGAEAPRPGGMPRPMGKPAPKPGARAPRVANNPFSTGGGERPAPRPGGGPRPGGGPRPGGGPRPQGQGRPGGQRDGQRDGQRDGQGNRGGQRQGAGAGGPRPQGGPRPQGGSRPQGGSAQGAQGAPSQERQGGGRRPSPAMMPPTPGQMPAKAPGKGGRGGQAGGGAGGGFNRGGGTGGGAGRGGRRGGTAGAFGRPGGAPRRGRKSKRQKRNEYESMQAPNVIGGVRLPDGKGATIRLARGASLADFADKIGADAAALVQALFNLGEMVTATASVSDETLQLLGEEMNYKVQVVSPEDEDRELLESFDLQFGEDEGGEADLAKRPPVVTVMGHVDHGKTRLLDTIRKANVGSDEAGGITQGIGAYQVKVNVEDTERTITFLDTPGHEAFTAMRARGAKSTDIAVLVVAADDGVMPQTVEAINHAKAADVPIVVAVNKIDKPEASPEKIRGQLTEYGLIPEEYGGDTIFVDISAKQGLNIDELLASVCLTADAELDLVANPEMDAQGVAIEAHLDRGRGPVATVIVQRGTLRVGDSIVAGDTYGRVRRMVDEYGRDVEEAGPSRPVQVQGLNGVPGAGDNLLVVEDDRIARQIANQRNARKRNALAARSRKRVSLEDLDSVLKEHSTLNLILKGDNAGSVEALEEALLKIEMDDEVQLNIIDRGVGAVTQTNVTLAAASDAVIIAFNVRAEGKATEEANAEGVDVRYYTIIYRAIEEVEAALKGMLKPIYEERVIGHAEIRAIFKASSVGLIAGCMVEDGKVRRNATVRIIRDGNVIAENAKIVSLRREKDDATEVSAGYECGMVLSYPDISVDDKIEVYEMVEVPREA

Annotated regions:
phrase: AQGVAIEAHLDRGRGPVATVIVQRGTLRVGDSIVAGDTYGRVRRMVDEYGRDVEEAGPSRPVQVQGLNGVPGAGDNLL
type: DOMAIN
name: EF-G-like_DII
description: Elongation factor G-like, domain II

phrase: ARSRKRVSLEDLDSVLKEHSTLNLILKGDNAGSVEALEEALLKIEMDDEVQLNIIDRGVGAVTQTNVTLAAASDAVIIAFNVRAEGKATEEANAEGVDVRYYTIIYRAIEEV
type: DOMAIN
name: TIF_IF2_dom3
description: Translation initiation factor IF- 2, domain 3

phrase: VVTVMGHVDHGKTRLLDTIRKANVGSDEAGGITQGIGAYQVKVNVEDTERTITFLDTPGHEAFTAMRARGAKSTDIAVLVVAADDGVMPQTVEAINHAKAADVPIVVAVNKIDKPEASPEKIRGQLTEYGLIPEEYGGDTIFVDISAKQGLNIDELLAS
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: PVVTVMGHVDHGKTRLLDTIRKANVGSDEAGGITQGIGAYQVKVNVEDTERTITFLDTPGHEAFTAMRARGAKSTDIAVLVVAADDGVMPQTVEAINHAKAADVPIVVAVNKIDKPEASPEKIRGQLTEYGLIPEEYGGDTIFVDISAKQGLNIDEL
type: DOMAIN
name: Small_GTP-bd
description: Small GTP-binding domain

phrase: VVTVMGHVDHGKT
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: TFLDTPGHEA
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: RGAKSTDIAVL
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: IVVAVNKID
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: SLADFADKIGADAAALVQALFNLGEMVTATASVSDETLQLLGEEMNY
type: DOMAIN
name: IF2_N
description: Translation initiation factor IF-2, N-terminal

phrase: PGKLRVHELAKQLGITSKELLATLKDKGEFVKTASSTIEPPVVKRMQEHY
type: DOMAIN
name: IF2_N
description: Translation initiation factor IF-2, N-terminal

phrase: AQGVAIEAHLDRGRGPVATVIVQRGTLRVGDSIVAGDTYGRVRRMVDEYGRDVEEAGPSRPVQVQGLNGVPGAGDNLLVVEDDRIARQIANQ
type: DOMAIN
name: IF2_II
description: Translation initiation factor IF-2, domain II

phrase: KRPPVVTVMGHVDHGKTRLLDTIRKANVGSDEAGGITQGIGAYQVKVNVEDTERTITFLDTPGHEAFTAMRARGAKSTDIAVLVVAADDGVMPQTVEAINHAKAADVPIVVAVNKIDKPEASPEKIRGQLTEYGLIPEEYGGDTIFVDISAKQGLNIDELLASVCLTADAEL
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain
Protein sequence:
MTVTTRFAPSPTGHLHVGNVRTALHNWLWARKHGGRFLLRIDDTDVERSKEDYVAGIRADLAWLGLDIDAEERQSARFALYEAEFEKLKAAGRVYACYETPDELEVRRKILLSRGLPPVYERKPADAPVPEGVAPHWRFRLDHDAPIEWTDLIRGPQHFEPTTMSDPVVRRADGSWLYLLPSVIDDIAMGISHVVRGEDHVSNTAAQVQMFAALGASPPAFAHEALLVGTEGKLSKRLGSLGMASLREQGIEPIALAALLARLGTSDPVEPVTDLAPLVASIDFARFGRAPARFDEAELALLNQKILHHIDHAAVADRLPAAIDEARWKAIRPNLTTVAEAADWLPVFDGPFVPTATEAADRPVLRAAAKAALDIDWSADPWHALTAAVKEATGAKGRALFLPLRRALTGRDHGPDMAELLPLIAKEAAIARLTSAGGS

Annotated regions:
phrase: WKAIRPNLTTVAEAADWLPVFDGPFVPTATEAADRPVLRAAAKAALDIDWSADPWHALTAAVKEATGAKGRALFLPLRRALTGRDHGPDMAELLPLIAKEAAIARLT
type: DOMAIN
name: aa-tRNA-synth_I_cd-bd
description: Aminoacyl-tRNA synthetase, class I, anticodon-binding

phrase: VTTRFAPSPTGHLHVGNVRTALHNWLWARKHGGRFLLRIDDTDVERSKEDYVAGIRADLAWLGLDIDAEERQSARFALYEAEFEKLKAAGRVYACYETPDELEVRRKILLSRGLPPVYERKPADAPVPEGVAPHWRFRLDHDAPIEWTDLIRGPQHFEPTTMSDPVVRRADGSWLYLLPSVIDDIAMGISHVVRGEDHVSNTAAQVQMFAALGASPPAFAHEALLVGTEGKLSKRLGSLGMASLREQGIEPIALAALLARLGTS
type: DOMAIN
name: Glu/Gln-tRNA-synth_Ib_cat-dom
description: Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain

phrase: PSPTGHLHVGN
type: CONSERVED_SITE
name: aa-tRNA-synth_I_CS
description: Aminoacyl-tRNA synthetase, class I, conserved site
Protein sequence:
MLKGKNILLGITGSIAAYKSVDLAKKLAEEGADVTVIMTEAACRFVPPMTFETVLGKPVYIKPFEGHVKHISLARNADVLIIAPATANTINKLACGIADNLLCTLWLAYKGPAFIAPAMNSRMYGHPVVQKSLRNLSKTGVSFIGPASGILACGEEGTGRMSETADIVEHVRSALTPKDLKGHNILVTAGPTREPLDPVRFISNRSSGKMGYAVAAAALRRGADVTLVSGPVCLRPPKGAGFIPVERAVEMQAAVLKNLSKATSVIMTAAVSDFAPSVARRSKLPKSKITAIDLEKTPDILSKIGRKKNGRFIIGFSAETSKNTEKAAEKLKQKNLDLIVLNNISQKGAGFDADTNIVTLIDKKGKQTDHPLMKKEEVADIILNRLPGPKKVRPDKA

Annotated regions:
phrase: LKGHNILVTAGPTREPLDPVRFISNRSSGKMGYAVAAAALRRGADVTLVSGPVCLRPPKGAGFIPVERAVEMQAAVLKNLSKATSVIMTAAVSDFAPSVARRSKLPKSKITAIDLEKTPDILSKIGRKKNGRFIIGFSAETSKNTEKAAEKLKQKNLDLIVLNNISQKGAGFDADTNIVTL
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal

phrase: KNILLGITGSIAAYKSVDLAKKLAEEGADVTVIMTEAACRFVPPMTFETVLGKPVYIKPFEGHVKHISLARNADVLIIAPATANTINKLACGIADNLLCTLWLAYKGPAFIAPAMNSRMYGHPVVQKSLRNLSKTGVSFIGPASGILACGEEGTGRMSETADIVEHVRS
type: DOMAIN
name: Flavoprotein
description: Flavoprotein
Protein sequence:
MTEQTIDNILPASKNNVKQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKLYEVGEVVTVTDGPFETFMGTVEEIDKERNRLKVSVSIFGKATPIELNFNQVKKND

Annotated regions:
phrase: KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQN
type: DOMAIN
name: NGN-like_dom
description: NusG-like, N-terminal

phrase: LYEVGEVVTVTDGPFETFMGTVEEIDK
type: DOMAIN
name: KOW
description: KOW

phrase: QWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIF
type: DOMAIN
name: NGN
description: NusG, N-terminal

phrase: VGEVVTVTDGPFETFMGTVEEIDKERNRLK
type: DOMAIN
name: KOW
description: KOW

phrase: VKQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIFNN
type: DOMAIN
name: NGN-like_dom
description: NusG-like, N-terminal

phrase: IFGKATPIE
type: CONSERVED_SITE
name: Transcrpt_antiterm_NusG_bac_CS
description: Transcription antitermination protein, NusG, bacteria, conserved site
Protein sequence:
MRLSKTLAGMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGANLNSSNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSQQITSPISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSASDAPHTHHPLHPHLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRGQAATPETPQPSPPSGSGSESYKLLPGAITTIVKPPSAIPQPTITKQEAI

Annotated regions:
phrase: LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMK
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: CAICGDRATGKHYGAS
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: SCDGCKGFFRRSVRK
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: RNQCRYCR
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: LKKCFRAG
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: SALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQ
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: SALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKK
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: ESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI
type: DOMAIN
name: Nucl_hrmn_rcpt_lig-bd
description: Nuclear hormone receptor, ligand-binding domain

phrase: CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER
type: DOMAIN
name: HNF4-like_DBD
description: Hepatocyte nuclear factor 4-like, DNA-binding domain

phrase: CAICGDRATGKHYGASSCDGCKGFFR
type: DOMAIN
name: Znf_hrmn_rcpt
description: Zinc finger, nuclear hormone receptor-type

phrase: SSLPSINALLQAEVLSQQITSPISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLG
type: DOMAIN
name: Nucl_hrmn_rcpt_lig-bd
description: Nuclear hormone receptor, ligand-binding domain

phrase: DIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
type: DOMAIN
name: Nucl_hrmn_rcpt_lig-bd
description: Nuclear hormone receptor, ligand-binding domain

phrase: SINALLQAEVLSQQITSPISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQE
type: DOMAIN
name: HNF4_LBD
description: Hepatocyte nuclear factor 4, ligand-binding domain
Protein sequence:
MERTLVILKPDSVKRKLVGEIISRFEKRNFTILHLKMMNIDRELACEHYSHVKDKPFFNDMIDYITSGPVVVMVLSGYRVIEAVRSMVGATSNFDSKPGTIRGDYGYHRFENLIHASDSCESAEIEIKRFFPELDS

Annotated regions:
phrase: MERTLVILKPDSVKRKLVGEIISRFEKRNFTILHLKMMNIDRELACEHYSHVKDKPFFNDMIDYITSGPVVVMVLSGYRVIEAVRSMVGATSNFDSKPGTIRGDYGYHRFENLIHASDSCESAEIEIKRFFPEL
type: DOMAIN
name: NDK-like_dom
description: Nucleoside diphosphate kinase-like domain

phrase: ERTLVILKPDSVKRKLVGEIISRFEKRNFTILHLKMMNIDRELACEHYSHVKDKPFFNDMIDYITSGPVVVMVLSGYRVIEAVRSMVGATSNFDSKPGTIRGDYGYHRFENLIHASDSCESAEIEIKRFFP
type: DOMAIN
name: NDK-like_dom
description: Nucleoside diphosphate kinase-like domain
Protein sequence:
MIPPPALDGMGRFDYYTKVMERDPMRIWWDDRAQAIGLRDGQSLAEELGLKRYRIDQLYRAAAKELLEDVASITVLPQTLRDELAARGFPFDTVTPSVVQRSNDGQTTKGLFALHDGQQVEAVLMEHRGERNTVCISSQAGCAFACAFCATGQAGFSRHLSSSEIFDQARYFARTLALQGRKVTNIVFMGMGEPFHNYDAVMGAVAMLNDPKGFGLGHRHITVSTVGVVPMIDRFADEGLQVNLAISLHAPTDEQRGAIMPVNKRWQIGELMDACARYVEKTGRKIFFEYLMLAGINDRQEDAQQLARLMAGRLYHVNLIPYNATPDAEFQGSEGVVVDAFQRVLTAAGVPSTIRHPMGRDIAAACGQLRAATQPRAGVPA

Annotated regions:
phrase: RGERNTVCISSQAGCAFACAFCATGQAGFSRHLSSSEIFDQARYFARTLALQGRKVTNIVFMGMGEPFHNYDAVMGAVAMLNDPKGFGLGHRHITVSTVGVVPMIDRFADEGLQVNLAISLHAPTDEQRGAIMPVNKRWQIGELMDACARYVEKTGRKIFFEYLMLAGINDRQEDAQQLARLMAGRLYHVNLIPYNATPDAEFQGSEGVVVDAFQRVLTAAGVPSTIRHPMGR
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: QSLAEELGLKRYRIDQLYRAAAKELLEDVASITVLPQTLRDELAARGFPFDTVTPSVVQRSNDGQTTKGLFALHDGQQVEAVLMEHRGERNTVCISSQAGCAFACAFCATGQAGFSRHLSSSEIFDQARYFARTLALQGRKVTNIVFMGMGEPFHNYDAVMGAVAMLNDPKGFGLGHRHITVSTVGVVPMIDRFADEGLQVNLAISLHAPTDEQRGAIMPVNKRWQIGELMDACARYVEKTGRKIFFEYLMLAGINDRQEDAQQLARLMAGRLYHVNLIPYNATPDAEFQGSEGVVVDAFQRVLTAAGVPSTIRHPMGRDIAAACGQLRAATQ
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: SSQAGCAFACAFCATGQAGFSRHLSSSEIFDQARYFARTLALQGRKVTNIVFMGMGEPFHNYDAVMGAVAMLNDPKGFGLGHRHITVSTVGVVPMIDRFADEGLQVNLAISLHAPTDEQRGAIMPVNKRWQIGELMDACARYVEKTGRKIFFEYLMLAGINDRQED
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: NTVCISSQAGCAFACAFCATGQAGFSRHLSSSEIFDQARYFARTLALQGRKVTNIVFMGMGEPFHNYDAVMGAVAMLNDPKGFGLGHRHITVSTVGVVPMIDRFADEGLQVNLAISLHAPTDEQRGAIMPVNKRWQIGELMDACARYVEKTGRKIFFEYLMLAGINDRQEDAQQLARLMAGRLYHVNLIPYNATPDAEFQGSEGVVVDAFQRVLTAA
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain
Protein sequence:
MGMSPVFACLALGLALIFGEGSASYNPESQAAHLATDFGVKVFRQVVEASQDHNVVFSPYGVASVLAMLQLTTGGETRKQIQEAMQFKIDEKGMAPALRQLYKELMGPWNKDEITTTDAIFVQRDLKLVKGFMPRFFKLFHTTVKQVDFSEVERARFIINDWVKKYTKGMISDLLDEGAVDELTRLVLVNALYFNGQWKTPFPESGTHHRLFHKSDGSTASVSMMAQTNKFNYAEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILDAQLISQWKRSMTRVVRLLVLPKFSLESEVDLRRPLENLGMTDMFRPNQADFTSISNQELLHVSQALQKVKIEVTESGTVASSSTGFVASARMAPEEIIMDRPFLFVVRHNPTGTVLFLGQVMEP

Annotated regions:
phrase: VKVFRQVVEASQDHNVVFSPYGVASVLAMLQLTTGGETRKQIQEAMQFKIDEKGMAPALRQLYKELMGPWNKDEITTTDAIFVQRDLKLVKGFMPRFFKLFHTTVKQVDFSEVERARFIINDWVKKYTKGMISDLLDEGAVDELTRLVLVNALYFNGQWKTPFPESGTHHRLFHKSDGSTASVSMMAQTNKFNYAEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILDAQLISQWKRSMTRVVRLLVLPKFSLESEVDLRRPLENLGMTDMFRPNQADFTSISNQELLHVSQALQKVKIEVTESGTVASSSTGFVASARMAPEEIIMDRPFLFVVRHNPTGTVLFLGQVME
type: DOMAIN
name: Serpin_dom
description: Serpin domain

phrase: ATDFGVKVFRQVVEASQDHNVVFSPYGVASVLAMLQLTTGGETRKQIQEAMQFKIDEKGMAPALRQLYKELMGPWNKDEITTTDAIFVQRDLKLVKGFMPRFFKLFHTTVKQVDFSEVERARFIINDWVKKYTKGMISDLLDEGAVDELTRLVLVNALYFNGQWKTPFPESGTHHRLFHKSDGSTASVSMMAQTNKFNYAEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILDAQLISQWKRSMTRVVRLLVLPKFSLESEVDLRRPLENLGMTDMFRPNQADFTSISNQELLHVSQALQKVKIEVTESGTVASSSTGFVASARMAPEEIIMDRPFLFVVRHNPTGTVLFLGQVME
type: DOMAIN
name: Serpin_dom
description: Serpin domain

phrase: IIMDRPFLFV
type: CONSERVED_SITE
name: Serpin_CS
description: Serpin, conserved site
Protein sequence:
MRQEWVAPRRGQANVSQMHYARQGIITEEMTYVAKRENLSPELIRSEIARGRLIIPANINHLNLEPMAIGIASKCKVNANIGASPNSSNINEELEKLHLAVKYGADTVMDLSTGGGNLDEIRTAIINASPVPIGTVPIYQAVESVHGNIEKLTPEDFLHIIEKHAGQGVDYMTIHAGILIEHLPLVKTRLTGIVSRGGGIIAKWMLHHHKQNPLYTHFDEIIEIFKRYDVSFSLGDSLRPGCTHDASDAAQLAELKTLGQLTRRAWEHDVQVMVEGPGHVPMDQIEFNVKKQMEECSEAPFYVLGPLVTDIAPGYDHITSAIGAALAGWYGTAMLCYVTPKEHLGLPNAEDVRNGLIAYKIAAHAADIARHRPGARDRDDELSIARYNFDWNRQFQLSLDPDRAKEYHDETLPADIYKTAEFCSMCGPKFCPMQTKVDADAITELEKFLASQNQDNLTPV

Annotated regions:
Protein sequence:
MSALRTVVFVTGNMKKLDEVRAILAGSVEVINRKIDLPELQGEPNDIAREKCRLAAAQVGGPVITEDTCLCFNALKGLPGPYIKWFLDKLGHEGLNNLIAAYPDKSAYSLCTFAYSAGPGSEPIVFEGRNNGRIVPARGPLDFGWDPVFQPDGYNETYAELDKAIKNRISHRSQALGLLQKYFETLDQK

Annotated regions:
Protein sequence:
MFENNRVRIAMQKTGRLSKDSIRLLTSCGVKINLKQQKLIAFAENMPIDVMLVRDDDIPGLVMDGVVDLGIVGENVLEEELLKRKSQKSECSYITLRRLDFGVCRLSLALPVNTIYTNITCLKNIRIATSYPHLLKKYLDEKNISFKSCMLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVQVVYHSHACLICKTGNINSIKKEFINKLMTRIKGVIKARESKYIMLHAPIKQLEAVISLLHGAERPTILKLAGDDNRVAMHMVSSETLFWETMEKLKLLGASSILVLPIEKMME

Annotated regions:
phrase: VRIAMQKTGRLSKDSIRLLTSCGVKINLKQQKLIAFAENMPIDVMLVRDDDIPGLVMDGVVDLGIVGENVLEEELLKRKSQKSECSYITLRRLDFGVCRLSLALPVNTIYTNITCLKNIRIATSYPHLLKKYLDEKNISFKSCMLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVQVVYHSHACL
type: DOMAIN
name: ATP_PRibTrfase_cat
description: ATP phosphoribosyltransferase, catalytic domain

phrase: RDDDIPGLVMDGVVDLGIVGENVLEEELLKRKSQKSECSYITLRRLDFGVCRLSLALPVNTIYTNITCLKNIRIATSYPHLLKKYLDEKNISFKSCMLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVQVVYHSHACLICKTGNINSIKKEFINKLMTRIK
type: DOMAIN
name: ATP_PRibTrfase_cat
description: ATP phosphoribosyltransferase, catalytic domain

phrase: NSIKKEFINKLMTRIKGVIKARESKYIMLHAPIKQLEAVISLLHGAERPTILKLAGDDNRVAMHMVSSETLFWETMEKLKLLGASSILVLPIEKM
type: DOMAIN
name: HisG_C
description: Histidine biosynthesis HisG, C-terminal

phrase: ARESKYIMLHAPIKQLEAVISLLHGAERPTILKLAGDDNRVAMHMVSSETLFWETMEKLKLLGASSILVLPIE
type: DOMAIN
name: HisG_C
description: Histidine biosynthesis HisG, C-terminal

phrase: EVAPRAGLADAICDLVSTGAT
type: CONSERVED_SITE
name: ATP_PRibTrfase_CS
description: ATP phosphoribosyltransferase, conserved site
Protein sequence:
MDSPKTLARVEVKENGDTFNVKAYEKAVKSYITKRKPLGEALDEEIMDELSVKFGIVDDALEDLFKQIQDAGISIVDKDGNPSPLALVTDEIEKEEVSDTAMDEIVTNVRIDDPVRMYLKEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM

Annotated regions:
phrase: DLIQEGNMGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: FSTYATWW
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: LTDREENVLRMR
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: TLEDVGKQFKVTRER
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: IRQIEAKAIKK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: ETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVD
type: DOMAIN
name: RNA_pol_sigma70_r3
description: RNA polymerase sigma-70 region 3

phrase: VMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR
type: DOMAIN
name: RNA_pol_sigma70_r4
description: RNA polymerase sigma-70 region 4

phrase: DLIQEGNMGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: LAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQAR
type: DOMAIN
name: RNA_pol_sigma70_r2
description: RNA polymerase sigma-70 region 2

phrase: QMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR
type: DOMAIN
name: RNA_pol_sigma-70_dom
description: RNA polymerase sigma-70-like domain

phrase: TLEDVGKQFKVTRERIRQIEAKAIKK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: AKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDF
type: DOMAIN
name: RNA_pol_sigma_RpoD_C
description: RNA polymerase sigma factor RpoD, C-terminal

phrase: DPVRMYLKEIGRYPLISLDEETKLAEAIIAGG
type: DOMAIN
name: RNA_pol_sigma70_r1_2
description: RNA polymerase sigma-70 region 1.2
Protein sequence:
MKYQQLENLESGWKWKYLVKKHREGELITRYVEASAAKEAVDLLLGMENEPVRVLGWIDQHMNPALQNRLKQTIRARRKRHFNAEHQHTRKKSIDLEFMVWQRLAGLAQRRGITLSETIVQLIEDAERKEKYENHMSTLKQDLQALLGKKE

Annotated regions:
phrase: HTRKKSIDLEFMVWQRLAGLAQRRGITLSETIVQLIEDAERKEKYENHMSTLKQDLQAL
type: DOMAIN
name: MatP_C
description: MatP, C-terminal ribbon-helix-helix domain

phrase: KYQQLENLESGWKWKYLVKKHREGELITRYVEASAAKEAVDLLLGMENEPVRVLGWIDQHMNPALQNRLKQTIRARRKRHFNA
type: DOMAIN
name: MatP_N
description: MatP, N-terminal
Protein sequence:
MDLKKHILNVKDFPIDGIDFKDVTPLLNDADAFAYVIDEMAKFVIECGANVVVAPEARGFLFASAVAYKSHTRFVLVRKPGKLPREVIDIEYTLEYGTNHQQMHKGDIKPGDKVVIIDDVLATGGTIEAIVKLVEMQEGKVEGVSFLIDLPALHDENLLQEYKVQKLVKY

Annotated regions:
phrase: VIDEMAKFVIECGANVVVAPEARGFLFASAVAYKSHTRFVLVRKPGKLPREVIDIEYTLEYGTNHQQMHKGDIKPGDKVVIIDDVLATGGTIEAIVKLVEMQEGKVEGVSFLIDL
type: DOMAIN
name: PRibTrfase_dom
description: Phosphoribosyltransferase domain

phrase: NDADAFAYVIDEMAKFVIECGANVVVAPEARGFLFASAVAYKSHTRFVLVRKPGKLPREVIDIEYTLEYGTNHQQMHKGDIKPGDKVVIIDDVLATGGTIEAIVKLVEMQEGKVEGVSFLI
type: DOMAIN
name: PRibTrfase_dom
description: Phosphoribosyltransferase domain