nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MREAKQDIAEFELNELETELAALGVQPFHARQLYRWVHNRGLEHFEGMTDLSQSLRVQLNQTFKFSTPQISARRISNDGTEKFLFTLADGKTIESVFIPDTPAMTFCISTQAGCAMRCRFCLTGQMGLTRHLTAGEIAGQVRVLVRELGLQNRRFNLVLMGMGEPLHNYDATMKSLRMIAAPEGLAITPRRVTLSTVGILPGLKRLASERWVPNLAVSLHATTDKVRHALIPTSRNQRLADLIDACREFPIKHRERITFEYVLLAGVNDTTADANRLATLLQDLRAKVNLIPLNEASGIPFSRPSNQQVNRFAQLVASSGLVVSVRKSRGRDIRAACGQLIIKDDCSTQPLNN

Annotated regions:
phrase: DIAEFELNELETELAALGVQPFHARQLYRWVHNRGLEHFEGMTDLSQSLRVQLNQT
type: DOMAIN
name: RlmN_N
description: Dual-specificity RNA methyltransferase RlmN, N-terminal domain

phrase: ISTQAGCAMRCRFCLTGQMGLTRHLTAGEIAGQVRVLVRELGLQNRRFNLVLMGMGEPLHNYDATMKSLRMIAAPEGLAITPRRVTLSTVGILPGLKRLASERWVPNLAVSLHATTDKVRHALIPTSRNQRLADLIDACREFPIKHRERITFEYVLLAGVNDT
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: DTPAMTFCISTQAGCAMRCRFCLTGQMGLTRHLTAGEIAGQVRVLVRELGLQNRRFNLVLMGMGEPLHNYDATMKSLRMIAAPEGLAITPRRVTLSTVGILPGLKRLASERWVPNLAVSLHATTDKVRHALIPTSRNQRLADLIDACREFPIKHRERITFEYVLLAGVNDTTADANRLATLLQDLRAKVNLIPLNEASGIPFSRPSNQQVNRFAQLVASSGLVVSVRKSRGR
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MRDLLNFFDKPKDPLSFDAVRVSLASPEMIREWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTQTKVRRERLGHIELATPVAHIWFLRSLPSRIGNLLNLSLKDVEKVLYCEAHVVIDPMETTLEEGQVLTEEALQAALNEFGPSFKYGMGGEAVRDLLKKIDPEYLSRKLRLEVKDTKSEAGIKKLTKRLRVVEAFKGSINKPEWMMLEALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQEAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFVYNKLEEKGLATTIKQAKRLVDQETVEVWDILADVVKEHPVLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQVEARVLMMSTNNILSPANGKPIINPSQDIVLGMYWLTRMRPGAKGSGKAFSSVQEAQYAFETGLVDLQAVCKVRINGTLQETTVGRAILSDIVPKEVPFNEVNVTMGKKQIAALIDKTFRLAGAKATCILADKIMEYGFKYSTAAGMSIGIDDMVIPAAKAPMIADAEKQVTEIQQQYDEGLITDGERYNKVVDIWAQTADKIAKEGMNAIEKQTFNVNGKEVVGPSFNPIYIMADSGARGSAAQIRQLGGMRGLMAKPSGEIIETPITANFREGLTVIQYFISTHGARKG

Annotated regions:
phrase: EKGLATTIKQAKRLVDQETVEVWDILADVVKEHPVLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQVEARVLM
type: DOMAIN
name: RNA_pol_asu
description: RNA polymerase, alpha subunit

phrase: GKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFVYNKLEEKGLATTIK
type: DOMAIN
name: RNA_pol_asu
description: RNA polymerase, alpha subunit

phrase: EWMMLEALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQEAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFVYNKLEEKGLATTIKQAKRLVDQETVEVWDILADVVKEHPVLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQVEARVLMMSTNNILSPANGKPIINPSQDIVLGMYWL
type: DOMAIN
name: RNA_pol_N
description: RNA polymerase, N-terminal

phrase: FDAVRVSLASPEMIREWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTQTKVRRERLGHIELATPVAHIWFLRSLPSRIGNLLNLSLKDVEKVLYCEAHVVIDPMETTLEEGQVLTEEALQAALNEFGPSFKYGMGGEAVRDLLKKIDPEYLSRKLRLEVKDTKSEAGIKKLTKRLRVVEAFKGSINKPEWMMLEALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQEAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQN
type: DOMAIN
name: RNA_pol_Rpb1_1
description: RNA polymerase Rpb1, domain 1

phrase: NILSPANGKPIINPSQDIVLGMYWLTRMRPGAKGSGKAFSSVQEAQYAFETGLVDLQAVCKVRINGTLQETTVGRAILSDIVPKEVPFNEVNVTMGKKQIAALIDKTFRLAGAKATCILADKIMEYGFKYSTAAGMSIGIDD
type: DOMAIN
name: RNA_pol_Rpb1_3
description: RNA polymerase Rpb1, domain 3

phrase: ITDGERYNKVVDIWAQTADKIAKEGMNAIEKQTFNVNGKEVVGPSFNPIYIMADSGARGSAAQIRQLGGMRGLMAKPSGEIIETPITANF
type: DOMAIN
name: RNA_pol_Rpb1_4
description: RNA polymerase Rpb1, domain 4
Protein sequence:
MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEICMYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMIHQPSGGFQGQATDIEIHAKEILDIKGRLNDIYVKHTGRDLSEVVANMERDNFMRAEKAKDFGIIDKVIEKRLDIGVE

Annotated regions:
phrase: RYALPNSRIMIHQ
type: ACTIVE_SITE
name: ClpP_His_AS
description: ClpP, histidine active site

phrase: TLCLGQAASMG
type: ACTIVE_SITE
name: ClpP_Ser_AS
description: ClpP, Ser active site
Protein sequence:
MATKILALLALLALLVSATNAFIIPQCSLAPSAIIPQFLPPVTSMGFEHPAVQAYRLQLVLAASALQQPIAQLQQQSLAHLTLQTIATQQQQHFLPSLSHLAVVNPVAYLQQQLLASNPLALANVATYQQQQQLQQFMPALSQLAMVNPAVYLQLLSSSPLAVGNAPTYLQQQLLQQIVPALTHQLAMANPATYLQQLLPFNQLAVSNSAAYLQQRQQLLNPLAVANPLVATFLQQQQLLPYNQFSLMNPALQQPIVGGAIF

Annotated regions:
Protein sequence:
MYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDELFSHLHPLLGDTMREIKGIGVASVVPTQNTVIERFSQKYFHISPIWVKAKDGCVKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTATTVDLVVNGSYEGGAILPGLFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRMKEVYGDLPVVLTGGQSKIVKDMIKHEIFDEDLTIKGVYHFCFGD

Annotated regions:
Protein sequence:
MEAAGAPCAPPPPAGSQTGAPPANLSSAPHNCSAEGYIYQDSVALPWKVLLVILLALITLATTLSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDLWLSSDITCCTASILHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPPFFWRQAKAEEEVSDCVVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRILKQTPNRTGKRLTRAQLITDSPGSTSSVTSVNSRAPDVPSESGSPVYVNQVKVRVSDALLEKKKLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPICKDACWFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRFKCAG

Annotated regions:
phrase: SNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDLWLSSDITCCTASILHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPPFFWRQAKAEEEVSDCVVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRILKQTPNRTGKRLTRAQLITDSPGSTSSVTSVNSRAPDVPSESGSPVYVNQVKVRVSDALLEKKKLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPICKDACWFHLAIFDFFTWLGYLNSLINPII
type: DOMAIN
name: GPCR_Rhodpsn_7TM
description: GPCR, rhodopsin-like, 7TM
Protein sequence:
MCFQTKLSISWVPLFLLLSRVFSTETDKPSAQDSRGRGSSGQLADLLQVLSAGDHPPHNHSRSLIKTLLEKTGCPRRRNGMQGDCHLCFEPDALLLIAGGNFEDQLREEVVQRVSLLLLYYIIHQEEICSSKLNMSNKEYKFYLHSLLSLRQDEDSSFLSQNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSSEGANENTLPQLAATIITLSLQGVCLGQGNLPSPDYFTEYIFSSLNRTHTLRLSELDQLLNTLWTRSTCIKKDKIHQLQRKQNSIITPDQDYSNFSSSMDEESEDGPISWDQTCFSARQLVEIFLQKSLSPISKEDFKQMSPGIIQQLLSCSCHLPKDQQAKLPPTTLEKYGYSTVAVTLLTLGSMLGTALVLFHSCEENYRLILQLFVGLAVGTLSGDALLHLIPQVLGLHKQEAPEFGHFHESKGHIWKLLGLIGGIHGFFLIEKCFILLVSPNDKKSPEDSQAAEMPIGSMTAPNRKCKVISLLAIMILVGDSLHNFADGLAIGAAFSSSSESGVTTTIAILCHEIPHEMGDFAVLLSSGLSMKTAILMNFISSLTAFIGLYIGLSVSADPCVQDWIFTVTAGMFLYLSLVEMPPEMTHVQTQRPWMMFLLQNFGLILGWLSLLLLAIYEQNIKK

Annotated regions:
phrase: PDYFTEYIFSSLNRTHTLRLSELDQLLNTLWTRSTCIKKDKIHQLQRKQNSIITPDQDYSNFSSSMDEESEDGPISWDQTCFSARQLVEIFLQKSLSPISKEDFKQMSPGIIQQLL
type: DOMAIN
name: ZIP4_12_EF-hand
description: Zinc transporter ZIP4/12, EF-hand

phrase: SLIKTLLEKTGCPRRRNGMQGDCHLCFEPDALLLIAGGNFEDQLREEVVQRVSLLLLYYIIHQEEICSSKLNMSNKEYKFYLHSLLSLRQDEDSSFLSQNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSSEGANENTLPQLAATIITLSLQGVC
type: DOMAIN
name: ZIP4_N
description: Zinc transporter ZIP4, N-terminal
Protein sequence:
MRVMGIMRNWPQWWIWGMLGFWLMIYSVVGNLWVTVYYGVPVWKEAKAPLFCASDAKAYDREVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQMHEDIISLWDESLKPCVKLTPLCITLNCSNVNITNNANNTSNATVNNTTIGEMKNCSFNITTEIRDKKKKEYALFYKLDIVPLDNENNGSSEYRLINCNTSAVTQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKIIIVHLNKSVEITCTRPNNNTRKSMRIGPGQTFYATGDIIGDIRQAYCKINESRWNETLQWVGEKLAKHFPNKTIQFNSPSGGDLEITTHTFNCRGEFFYCNTSNLFNFTYLPNGTSINSANILNGTITLPCRIKQIINMWQEVGKAMYAPPVAGKITCKSNITGILLTRDGGKDNNETETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTDAKRRVVEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVAWNSSWSNKSKDEIWNNMTWMQWDREISNYTDIIYNLLEISQTQQEANEKDLLALDKWQNLWNWFDISKWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPSPRGPDRLGRIEEEGGEQDRDRSIRLVSGFLALAWDDLRSLCLFSYH

Annotated regions:
phrase: MGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVAWNSSWSNKSKDEIWNNMTWMQWDREISNYTDIIYNLLEISQTQQEANEKDLLALDKWQNLWNWFDISKWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQT
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: VQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVAWNSSWSNKSKDEIWNNMTWMQWDREISNYTDIIYNLLEISQTQQEANEKDLLALD
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: LWVTVYYGVPVWKEAKAPLFCASDAKAYDREVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQMHEDIISLWDESLKPCVKLTPLCITLNCSNVNITNNANNTSNATVNNTTIGEMKNCSFNITTEIRDKKKKEYALFYKLDIVPLDNENNGSSEYRLINCNTSAVTQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKIIIVHLNKSVEITCTRPNNNTRKSMRIGPGQTFYATGDIIGDIRQAYCKINESRWNETLQWVGEKLAKHFPNKTIQFNSPSGGDLEITTHTFNCRGEFFYCNTSNLFNFTYLPNGTSINSANILNGTITLPCRIKQIINMWQEVGKAMYAPPVAGKITCKSNITGILLTRDGGKDNNETETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTDAKRRVVEREK
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120
Protein sequence:
MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKACREAGVTVRVVRNTLLRRAVEGTSYEVLKDAFVGPTLIAFSSEHPGAAARLFKDFAKANPAFEIKAAAFEGEFIPGSNIDRLATLPTYEEAIARLMSTMKEAAAGKLVRTLAALRDQKEAA

Annotated regions:
phrase: KQAIVAEVSEVAKGALSAVVADSRGVTVDKMTEL
type: CONSERVED_SITE
name: Ribosomal_uL10_CS_bac
description: Large ribosomal subunit protein uL10, conserved site, bacteria
Protein sequence:
MPSHTVNVRTAAPLDVIILAAGLGTRMKSGLAKVLHKLDGRPLIAHVCRTAAKLRPRKIYVVVGHQAEQVEAAVEEELGKDGAVFVPQEKQRGTGDAVLAAQNVLANAASTILILSGDVPMVRIETLTSLIETHTDSNSACTILTLRVENPMGYGRVVRDDANIFRKIVEQKDANEDERQIREVNSGIYCFDSEKLFSALKEVQPSNSQNEYYLTDVPSILRSANERVSLSQHPDVREVSGINTRAELAEFENLIRRRTIRGLMLEQGVTFIDPSHAYVSSEAQIGRDCIIHPEVHIEGPSVIGEACEIHQGSRIVNSRIGDRVTVKDHCLIIDSEIANDCAVGPFAHLRMKAKLEERAVVGNFVEVKKSTIGRGTKAMHLSYLGDATIGEQTNIGAGTVTCNYDGKHKHPTIIEDNVRIGSDTMLVAPVTIGRGSVTAAGAVVTEDVPPNTLVAGVPAKVKKKLDEDGK

Annotated regions:
phrase: GVTFIDPSHAYVSSEAQIGRDCIIHPEVHIEGPSVIGEACEIHQGSRIVNSRIGDRVTVKDHCLIIDSEIANDCAVGPFAHLRMKAKLEERAVVGNFVEVKKSTIGRGTKAMHLSYLGDATIGEQTNIGAGTVTCNYDGKHKHPTIIEDNVRIGSDTMLVAPVTIGRGSVTAAGAVVTEDVPPNTL
type: DOMAIN
name: GlmU_C_LbH
description: GlmU, C-terminal LbH domain

phrase: VIILAAGLGTRMKSGLAKVLHKLDGRPLIAHVCRTAAKLRPRKIYVVVGHQAEQVEAAVEEELGKDGAVFVPQEKQRGTGDAVLAAQNVLANAASTILILSGDVPMVRIETLTSLIETHTDSNSACTILTLRVENPMG
type: DOMAIN
name: MobA-like_NTP_Trfase
description: MobA-like NTP transferase

phrase: AQIGRDCIIHPEVHIEGPSVIGEACEIHQGSR
type: REPEAT
name: Hexapep
description: Hexapeptide repeat

phrase: PTIIEDNVRIGSDTMLVAPVTIGRGSVTAAGAVV
type: REPEAT
name: Hexapep
description: Hexapeptide repeat
Protein sequence:
MTLTKPRPTRRPTSRYHWLPAVAGWTVGVIATVSLLASLSPLIRWLIHEPREFINSYLFNFPDTSFAWSFVLALLAAALAARKRIAWWVLLGNMVVAAGINAADIAAGGNTPAEAFGENLGFAFHVVTIVLLVLGYREFWAKVRRGALFRAAGVLLVGGAIGILASWGLVEMFPGTLAAPDRLPYVANRVVGFGFADPDLFTGRPHVFLNAIFGLFGAFALIAATVVLFLSQRADNALTGEDESAIRGLVELWGKNDSLAYFATRRDKSVIFAPSGRAAIAYRVELGVCLASGDPIGDPRAWSQAVAAWMELCQTYGWSPGVMGASSEGAQVYREAGLNALVLGDEAILRPAEFKLSGPEMRGVRQAVTRARRAGLTVRIRRHRDIPRDEMAQTVERADSWRDTETERGFSMALGRLGDPADGDCLLVEAIGPANQVVAMLSLVPWGNTGASLDVMRRSRESPNGTIELMVSELALHAESLGINRISLNFAMFRSAFEQGEQLGAGPIARLWRGLLIFFSRWWQIETLYRSNMKYQPEWVPRFACYDDARLIPKVGVASAFAEGFLTLPFTRRDKVHTGHHPAVPQQLVDSGLLHPDGTAPDVSGLQVADLPGSDDMRRRQPEQVRVRLAKLKKLQDSGIEAYPVGEPPSHTVAQALAAEDGASVSVAGRILRVRNYGGVLFAHLRDWSGEMQLLLDNSRLEQGRAADFNAAIDLGDLVEATGRMGFSDKGTRSLIVTHWRLTGKCLRPLPDKWKGLTDPEARVRTRY

Annotated regions:
phrase: VSVAGRILRVRNYGGVLFAHLRDWSGEMQLLLDNSRLEQGRAADFNAAIDLGDLVEATGRMGFSDKGTRSLIVTHWR
type: DOMAIN
name: NA-bd_OB_tRNA
description: OB-fold nucleic acid binding domain, AA-tRNA synthetase-type

phrase: LVELWGKNDSLAYFATRRDKSVIFAPSGRAAIAYRVELGVCLASGDPIGDPRAWSQAVAAWMELCQTYGWSPGVMGASSEGAQVYREAGLNALVLGDEAILRPAEFKLSGPEMRGVRQAVTRARRAGLTVRIRRHRDIPRDEMAQTVERADSWRDTETERGFSMALGRLGDPADGDCLLVEAIGPANQVVAMLSLVPWGNTGASLDVMRRSRESPNGTIELMVSELALHAESLGINRISLNFAMFRSAFEQGEQLGAGPIARLWRGLLIFFSRWWQIETLYRSNMKYQPEWVPRFAC
type: DOMAIN
name: LPG_synthase_C
description: Phosphatidylglycerol lysyltransferase, C-terminal

phrase: SVSVAGRILRVRNYGGVLFAHLRDWSGEMQLLLDNSRLEQGRAADFNAAIDLGDLVEATGRMGFSDKGTRSLIVTHWRLTGKCLRPLPDKWKGLTDPEARVRTR
type: DOMAIN
name: Lys-tRNA-ligase_II_N
description: Lysine-tRNA ligase, class II, N-terminal

phrase: RYHWLPAVAGWTVGVIATVSLLASLSPLIRWLIHEPREFINSYLFNFPDTSFAWSFVLALLAAALAARKRIAWWVLLGNMVVAAGINAADIAAGGNTPAEAFGENLGFAFHVVTIVLLVLGYREFWAKVRRGALFRAAGVLLVGGAIGILASWGLVEMFPGTLAAPDRLPYVANRVVGFGFADPDLFTGRPHVFLNAIFGLFGAFALIAATVVL
type: DOMAIN
name: tRNA-synt_2_TM
description: Lysyl-tRNA synthetase, N-terminal transmembrane region
Protein sequence:
MRKHFGTDGIRGRANVVITPELALKVGQAAGVIFQRGDHRHRVVIGKDTRLSGYMIETALVAGFTSVGMDVLLLGPMPTPAVAMLTRSMRADIGVMISASHNPYEDNGIKLFGPDGFKLNDDLELEIESLIDGDMRNRLSASRDLGRAKRIESVHARYIEFAKRTLPRHVTLDGLRVVVDCANGAAYRVAPETLWELGAEVISIGVEPDGFNINHDVGSTAPETLVQKVRELRADVGIALDGDADRVLIVDEKGQKVDGDQLMAAVARSWQEDERLTQPGLVATIMSNLGLERYINSIGLTLARTAVGDRYVLEHMRQHGYNLGGEQSGHIIMSDYATTGDGLVAALQLLSVVKRRNLPVSEVCHCFEPLPQILKNVRFRSGEPLRADSVVTAIAHAKDRLGQSGRLVIRPSGTEPVIRVMAEGDDRDLVAEVVDEVVDAVTRAAA

Annotated regions:
phrase: KHFGTDGIRGRANVVITPELALKVGQAAGVIFQRGDHRHRVVIGKDTRLSGYMIETALVAGFTSVGMDVLLLGPMPTPAVAMLTRSMRADIGVMISASHNPYEDNGIKLFGPDGFKLNDDLELEIESLID
type: DOMAIN
name: A-D-PHexomutase_a/b/a-I
description: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I

phrase: DGDQLMAAVARSWQEDERLTQPGLVATIMSNLGLERYINSIGLTLARTAVGDRYVLEHMRQHGYNLGGEQSGHIIMSDYATTGDGLVAALQLLSVVKRRNLPVSEVCH
type: DOMAIN
name: A-D-PHexomutase_a/b/a-III
description: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III

phrase: LKNVRFRSGEPLRADSVVTAIAHAKDRLGQSGRLVIRPSGTEPVIRVMAEGDDRDLVAEVVDEVV
type: DOMAIN
name: A-D-PHexomutase_C
description: Alpha-D-phosphohexomutase, C-terminal

phrase: RYIEFAKRTLPRHVTLDGLRVVVDCANGAAYRVAPETLWELGAEVISIGVEPDGFNINHDVGSTAPETLVQKVRELRADVGIALDGDADRVLIVDEK
type: DOMAIN
name: A-D-PHexomutase_a/b/a-II
description: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II

phrase: GVMISASHN
type: CONSERVED_SITE
name: A-D-PHexomutase_CS
description: Alpha-D-phosphohexomutase, conserved site
Protein sequence:
MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRITSEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRWMDVEMALASDEKQSDNTIINSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSIKVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDESAQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLALITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKVEKLKNAEPIYKDL

Annotated regions:
phrase: AITEAEAKSKLNKNVQVRETRLALITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKV
type: DOMAIN
name: PepSY
description: PepSY domain

phrase: KDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRITSEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRWM
type: DOMAIN
name: YpeB_N
description: Sporulation protein YpeB, N-terminal

phrase: RGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRITSEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRWMDVEMALASDEKQSDNTIINSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSIKVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDESAQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLALITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKVEK
type: DOMAIN
name: YpeB_PepSY1-2
description: Sporulation protein YpeB, PepSY1 and PepSY2 domains

phrase: NSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSIKVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDESAQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTI
type: DOMAIN
name: YpeB_PepSY1-2
description: Sporulation protein YpeB, PepSY1 and PepSY2 domains
Protein sequence:
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQLESEETLRRIEQIAQQL

Annotated regions:
phrase: YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFA
type: DOMAIN
name: ATP-dep_Helicase_C
description: ATP-dependent helicase, C-terminal

phrase: LLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQ
type: DOMAIN
name: Helicase-like_DEXD_c2
description: Helicase-like, DEXD box c2 type

phrase: YCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRT
type: DOMAIN
name: RAD3-like_helicase_DEAD
description: RAD3-like helicase, DEAD

phrase: LRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAK
type: DOMAIN
name: HBB
description: Helical and beta-bridge domain

phrase: AVVVFDEAH
type: CONSERVED_SITE
name: DNA/RNA_helicase_DEAH_CS
description: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

phrase: GLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLR
type: DOMAIN
name: Helic_SF1/SF2_ATP-bd_DinG/Rad3
description: Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type

phrase: LEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQ
type: DOMAIN
name: ATP-dep_Helicase_C
description: ATP-dependent helicase, C-terminal
Protein sequence:
MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRPEGRTWAQPGYPWPLYGNEGMGWAGWLLSPRGSRPSWGPTDPRRRSRNLGKVIDTPTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTIPASAIEVRNVSGVYHVTNDCSNASIVYEAADMIMHTPGCVPCVRENNSSRCWVALTPTLAARNSSIPTTTIRRHVDLLVGTAAFCSAMYVGDLCGSVFLVSQLFTFSPRRHETVQDCNCSIYPGHVSGHRMAWDMMMNWSPTTALVVSQLLRIPQAVVDMVAGAHWGVLAGLAYYSMVGNWAKVLIVMLLFAGVDGKTYTTGGAQAHTARGLTTLFSFGPSQNIQLINTNGSWHINRTALNCNDSLNTGFLAALFYAHKFNASGCPERMASCRPIDKFAQGWGPITYAKPPSLDQKPYCWHYAPQPCGIVPASQVCGPVYCFTPSPVVVGTTDRFGVPTYSWGENETDVLLLNNTRPPRGNWFGCTWMNGTGFTKTCGGPPCNIGGVGNDTLICPTDCFRKHPEATYTKCGSGPWLTPRCMVDYPYRLWHYPCTLNFTIFKVRMYVGGVEHRLNAACNWTRGERCDLEDRDRSELSPLLLSTTEWQVLPCSFTTLPALSTGLIHLHRNIVDVQYLYGIGSAVVSYAIKWEYVLLLFLFLADARVCACLWMMLLIAQAEAALENLVVLNAASVAGTHGILSF

Annotated regions:
phrase: STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRPEGRTWAQPGYPWPLYGNEGMGWAGWLLSPRGSRPSWGPTDPRR
type: DOMAIN
name: HCV_core_N
description: Hepatitis C virus, Core protein, N-terminal

phrase: EVRNVSGVYHVTNDCSNASIVYEAADMIMHTPGCVPCVRENNSSRCWVALTPTLAARNSSIPTTTIRRHVDLLVGTAAFCSAMYVGDLCGSVFLVSQLFTFSPRRHETVQDCNCSIYPGHVSGHRMAWDMMMNWSPTTALVVSQLLRIPQAVVDMVAGAHWGVLAGLAYYSMVGNWAKVLIVMLLFAGV
type: DOMAIN
name: HCV_Env
description: Hepatitis C virus, Envelope glycoprotein E1

phrase: TTGGAQAHTARGLTTLFSFGPSQNIQLINTNGSWHINRTALNCNDSLNTGFLAALFYAHKFNASGCPERMASCRPIDKFAQGWGPITYAKPPSLDQKPYCWHYAPQPCGIVPASQVCGPVYCFTPSPVVVGTTDRFGVPTYSWGENETDVLLLNNTRPPRGNWFGCTWMNGTGFTKTCGGPPCNIGGVGNDTLICPTDCFRKHPEATYTKCGSGPWLTPRCMVDYPYRLWHYPCTLNFTIFKVRMYVGGVEHRLNAACNWTRGERCDLEDRDRSELSPLLLSTTEWQVLPCSFTTLPALSTGLIHLHRNIVDVQYLYGIGSAVVSYAIKWEYVLLLFLFLAD
type: DOMAIN
name: HCV_NS1
description: Hepatitis C virus, Non-structural protein E2/NS1

phrase: SRNLGKVIDTPTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTIPA
type: DOMAIN
name: HCV_Core_C
description: Hepatitis C virus, Core protein, C-terminal
Protein sequence:
MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQVVHFETQAIRPLQSWCFGTNANLPDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKLRSAILPKGVSHYHYALDHQKMHVAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVESLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVDVHYPERFGIPKTALGPLFLADN

Annotated regions:
phrase: EYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQVVHFETQAIRPLQSWCFGTNANLPDDIAVKWAVEVSEDFHARF
type: DOMAIN
name: PsdUridine_synth_TruA_a/b_dom
description: Pseudouridine synthase I, TruA, alpha/beta domain

phrase: FLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVESLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVDVHY
type: DOMAIN
name: PsdUridine_synth_TruA_a/b_dom
description: Pseudouridine synthase I, TruA, alpha/beta domain
Protein sequence:
MGPRSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQRNQTTDDIWSAGNLNHKPTLNTSSTHSNSEESRSPLHEPSEASLAHDEHSIPTDDNEETLTNLQANDVDEDEVWRKIVRMKVHSTDT

Annotated regions:
phrase: PLAMWDFGHCNPNACSGKRLERLGCVRNLRIGQ
type: DOMAIN
name: RNaseL-inhib-like_metal-bd_dom
description: RNase L inhibitor RLI-like, possible metal-binding domain

phrase: VVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKY
type: DOMAIN
name: Tsr3_C
description: 16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal
Protein sequence:
MSWSKVKYFFFDTPEEKEAAQYSYEKEQTDMKKQQDPPEQQDVTFPKAQTKQNVVSIETAKQSSKVVLLEPRTYSEAQGIADHLKGRRAVVINLQRMSTDQAVRIVDFLSGTVYAIGGDIQKIGPKTFMCTPENVDIVGAISELFGEEEDTNIKRW

Annotated regions:
Protein sequence:
MSDDILARTRPSRPRATPLVDLAGWLARHADGFRDPGTLDGEVTGISLSSQRIRPGDVYAALPGSRAHGIRFAADAVAAGAAAVLTDEAGAAEDPGVPLLVIDRPRAVLGRLAGWLYGDPAASLRLVGVTGTQGKTTTTRLAEGGLQAAGEHVAVIGTVGTRVDGEDVRTSLTTPEAPDLHGLFAMMRERGVTGCAMEVSSHALVMGRVDGVLFDVAVFTNLGRDHLDFHRDLDDYFAAKATLFTPARARRGLVNVDDEHGRLLLELATIPVRTYSSEGADADWRATDVELAATGSRFTVRGPGGLVLEASVPLPGDFNVSNALAAIASSAEAGWDAAAVAAGIAAGGGVPGRLERVEAGQDFAVVVDYAHKPDAVESALRTLRPLTEGRLIVVIGAGGDRDPGKRPLMGEIAGRLSDVLVVTDDNPRSEDAASIRAAILAGTEGTAAEVLEVGDRRLAIREAVGRAGTGDVVLVAGKGHESGQEVGDVVHPFDDREVVREELGARAEEEDLP

Annotated regions:
phrase: GRLERVEAGQDFAVVVDYAHKPDAVESALRTLRPLTEGRLIVVIGAGGDRDPGKRPLMGEIAGRLSDVLVVTDDNPRSEDAASIRAAILAGTEGTAAEVLEVGDRRLAIREAVGRAGTGDVVLVAGK
type: DOMAIN
name: Mur_ligase_C
description: Mur ligase, C-terminal

phrase: VTGTQGKTTTTRLAEGGLQAAGEHVAVIGTVGTRVDGEDVRTSLTTPEAPDLHGLFAMMRERGVTGCAMEVSSHALVMGRVDGVLFDVAVFTNLGRDHLDFHRDLDDYFAAKATLFTPARARRGLVNVDDEHGRLLLELATIPVRTYSSEGADADWRATDVELAATGSRFTVRGPGGLVLEASVPLPGDFNVSNALAAIA
type: DOMAIN
name: Mur_ligase_cen
description: Mur ligase, central

phrase: EVTGISLSSQRIRPGDVYAALPGSRAHGIRFAADAVAAGAAAVLTDEAGAAEDPGVPLLVIDRPRAVLGRL
type: DOMAIN
name: Mur_ligase_N
description: Mur ligase, N-terminal catalytic domain
Protein sequence:
MSRIGRLPISVPAGVEVKVDGALVSVKGPKGQLTLTVSNPIEVALEESTLTVSRPNDERASRSLHGLTRTLIANLITGVTEGYEKKLEIVGTGYRVLAKGSDLEFALGYSHPVAVKAPEGITLTVEGPTKLSVAGIDKQQVGEVAANIRKLRKPDPYKGKGIRYADEVIRRKVGKAGK

Annotated regions:
phrase: PDPYKGKG
type: CONSERVED_SITE
name: Ribosomal_uL6_CS
description: Large ribosomal subunit protein uL6, conserved site

phrase: VGTGYRVLAKGSDLEFALGYSHPVAVKAPEGITLTVEGPTKLSVAGIDKQQVGEVAANIRKLRKPDPYKGKGIR
type: DOMAIN
name: Ribosomal_uL6_a/b-dom
description: Large ribosomal subunit protein uL6, alpha-beta domain

phrase: VPAGVEVKVDGALVSVKGPKGQLTLTVSNPIEVALEESTLTVSRPNDERASRSLHGLTRTLIANLITGVTE
type: DOMAIN
name: Ribosomal_uL6_a/b-dom
description: Large ribosomal subunit protein uL6, alpha-beta domain
Protein sequence:
MPSFLVPSLVSSPVLLKLLFSPGPKTIWSLWQQPMLFQEATAFENMTKDWNYLEGSQKDCYRDTMLDSYENTVPQGSFLQLSMMPQRAGNDPPGVSNASEMEMEISNMREKFLMSVTKLVESKSYNSKVFSKEKYFQTIKEVKEAKEKGKKSSRDYRRAAKYDVISVQGTEKLIEATHGERDRIRYYVHKEELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYLTLCKQCHQKNPVPKRGLAPKPMTFKDIDSTCQVEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYKAKFGLYSSNLPRETVATLQTEEELEIAEEQLENSLWIRQEERAEIGADRSDMDDDMDPTPEASEPSTSQGTSGLLCW

Annotated regions:
phrase: KDWNYLEGSQKDCYRDTMLDSYENT
type: DOMAIN
name: KRAB
description: Krueppel-associated box

phrase: AFENMTKDWNYLEGSQKDCYRDTMLDSYENTVP
type: DOMAIN
name: KRAB
description: Krueppel-associated box

phrase: RGLAPKPMTFKDIDSTCQVEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGY
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core
Protein sequence:
MSSTLSNEESGLGDSNRSTEVDGGDGGNFTAYESRFQSQRFDSSFSNFDSQPEKESDLPCGDSSPRPETQSPPSINSFDDTNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKKKTATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPSGADPNVSVSEQVTVTEKL

Annotated regions: