nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MEDKMGKAISCIVLAAGAGRRMGYKENKIFIPLGGHSIIQRTIQNVEKIECLKEIILVVAEGEQEYMSNHIQGLDLHIPVKIVLGGRERQDSVGYGLKAVSEDSNIVLVHDGARPLASTKLFDSVVRATIEYGAATVGVPATDTIKRVDTEHTVIETLKRSELYQIQTPQGFQKDLFKEAHQKAYDEKYLGTDDVSLVEYLGKPVHIVSGDYCNIKVTTPNDIAVAKRYLGIEDKRMRVGFGYDIHQLKAGRPCILGGVHIESDLGPDGHSDADVLIHALMDAMLGAAGLRDIGYYFPPEDDQYKGISSMLLLEKVNFLLKERGLQAYNIDIMVISETPKLKPHIDMMKANLQSILEIPLDRISIKATTNEMLGAIGRREGIAAQAVVSVYEGEI

Annotated regions:
phrase: RVGFGYDIHQLKAGRPCILGGVHIESDLGPDGHSDADVLIHALMDAMLGAAGLRDIGYYFPPEDDQYKGISSMLLLEKVNFLLKERGLQAYNIDIMVISETPKLKPHIDMMKANLQSILEIPLDRISIKATTNEMLGAIGRREGIAAQAVVSV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: SDADVLIHALMDAML
type: CONSERVED_SITE
name: MECDP_synthase_CS
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site

phrase: MRVGFGYDIHQLKAGRPCILGGVHIESDLGPDGHSDADVLIHALMDAMLGAAGLRDIGYYFPPEDDQYKGISSMLLLEKVNFLLKERGLQAYNIDIMVISETPKLKPHIDMMKANLQSILEIPLDRISIKATTNEMLGAIGRREGIAAQAVVSVY
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: RVGFGYDIHQLKAGRPCILGGVHIESDLGPDGHSDADVLIHALMDAMLGAAGLRDIGYYFPPEDDQYKGISSMLLLEKVNFLLKERGLQAYNIDIMVISETPKLKPHIDMMKANLQSILEIPLDRISIKATTNEMLGAIGRREGIAAQAVVS
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: MRVGFGYDIHQLKAGRPCILGGVHIESDLGPDGHSDADVLIHALMDAMLGAAGLRDIGYYFPPEDDQYKGISSMLLLEKVNFLLKERGLQAYNIDIMVISETPKLKPHIDMMKANLQSILEIPLDRISIKATTNEMLGAIGRREGIAAQAVVS
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: VLVHDGA
type: CONSERVED_SITE
name: ISPD_synthase_CS
description: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site
Protein sequence:
MEHVVTCWRLKLLSWPVFLIWICLSLASVSLISWDQLPAFLIPSTGDSSLQTAKSRDSMKAPGRLLLLTLCILTFSAVCVFLCCWACLPLCLATCLDRHLPAAPRSTVPGPLHFSGYSSVPDGKPLIRELCHSCAVVSNSGQMLGSGLGAQIDGAECVLRMNQAPTVGFEEDVGQRTTLRVISHTSVPLLLRNYSHYFQHARDTLYVVWGQGRHMDRVLGGRTYRTLLQLTRMYPGLQVYTFTERMMAYCDQIFQDETGKNRRQSGSFLSTGWFTMIPALELCEEIVVYGMVSDSYCSEKSPRSVPYHYFEKGRLDECQMYRLHEQAPRSAHRFITEKAVFSRWAKKRPIVFAHPSWRAK

Annotated regions:
Protein sequence:
MEERILTQNFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYSVEELKEIIKRSANILNIGIDEKAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDFKTSKEALDVLGVDEIGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYLLQIGFLNRTPRGRVVTKLAYDYLKYPYIEQGRIEGV

Annotated regions:
phrase: YSVEELKEIIKRSANILNIGIDEKAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDFKTSKEALDVLGV
type: DOMAIN
name: AAA_lid_4
description: RuvB, AAA lid domain

phrase: PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINR
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: EIGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYLLQIGFLNRTPRGRVVTKLAYDYL
type: DOMAIN
name: RuvB_C
description: RuvB C-terminal winged helix domain

phrase: LRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINR
type: DOMAIN
name: RuvB-like_N
description: RuvB-like P-loop domain
Protein sequence:
MPNDVFRKKKIILGVTGCIAAYKACYLTRELKNRGAEVKVVMTPSALQFVAPLTFSTLSGNPVIVNIFPVSQQNGTDVSTWHIDTARWADLILIAPATVNTVAKIAYGFADNALTTLVSAARSPLVVVPAADVDMYMNKTTTANIQKLEELGHYVVYAEEGELASGLSGYGRMADINKIIDSTELVLSGIKKDLNGKKILVTAGPTYEDIDPVRYIGNRSSGKMGYSLAKAAFLRGADVTLISGPSAEAAYPEIKLYKVRSAKEMKAAVTKELKTNDILIMSAAVADYKPAETSQRKIKKEDKLASLRLMQTDDILSSIKKDSAYGTGGKKIIGFALETNDAEKNAAKKLKEKNLDMIVLNSLSDKKSGFEYDSNKITIIGKSGKKKSFSLQSKFQVANNILTEILRMS

Annotated regions:
phrase: LNGKKILVTAGPTYEDIDPVRYIGNRSSGKMGYSLAKAAFLRGADVTLISGPSAEAAYPEIKLYKVRSAKEMKAAVTKELKTNDILIMSAAVADYKPAETSQRKIKKEDKLASLRLMQTDDILSSIKKDSAYGTGGKKIIGFALETNDAEKNAAKKLKEKNLDMIVLNSLSDKKSGFEYDSNKITI
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal

phrase: KKIILGVTGCIAAYKACYLTRELKNRGAEVKVVMTPSALQFVAPLTFSTLSGNPVIVNIFPVSQQNGTDVSTWHIDTARWADLILIAPATVNTVAKIAYGFADNALTTLVSAARSPLVVVPAADVDMYMNKTTTANIQKLEELGHYVVYAEEGELASGLSGYGRMADINKIID
type: DOMAIN
name: Flavoprotein
description: Flavoprotein
Protein sequence:
MLSYFQGFVPIHTIFYSVFHPTEGSKIKYEFPPNNLKNHGINFNTFKNYIIPKPILCHKLITFKYGTYRIVCYPVTINSPIYARNFFSFNFVFVFPYDCETSPYEPAITRLGKMFKVLEEQNQLLSKSERDPVFFDLKVLENSTTTPSTAGPSSTPNPSSNTTPTHPTSEKDTKDMRSSRYSDLIKDLGLPQSAFSIQDLLMRIFQDLNNYSECLIPIDEGNAVDIKIFPLLRPPTTCVSLEDVPLSSVNLKKIIDVNWDPTMMSIVPYIDGLNSIAKISKLSNSDPGLVIECIRHLIYYKCVTLSDIFQFSNIYAPSSLIRNFLTDPLMASDCQSYVTFPEVSKISNLPLNKSLGSGDQDSPSFSVRRKSKSSSIPSNPDSRTTSFSSTSRVSQNSSLNSSFSSIYKDWRQSQTSCSSSNIHVINNRNRFLPTRSCLFDLYRSLSQGQTLKTWYESKYMILKENNIDIRRFITFGLEKRIIYRCYSFPVMINAGSREPKEMTPIITKDLVNNDKLLEKRNHNHLLSATGSRNTAQSGNLKPERPSKVSFEMQRVSSLATGKSTMPKLSDEEEGILEESIRNAETFDKICVLLSKPKLEVESYLNELGEFKVINS

Annotated regions:
Protein sequence:
MADGLNRVHFNPSTAQLVEFALLRGEGELTANGALVAKTGARSGRSPGDRFIVREPSSEAEIEWGPVNQAFDPGAFEGLWARVEAYLADKELFVSDLEVGADTEHYQPVRVTTQYAWHQLFARNLFIIPEEFNRKNKPVWQIINAPDFVCDPARDGTNSDATVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTVLENVVMDEHRVPNYKDSSLTENTRAAYPLEHIAQRKEDNCGAEPHAVVFLTCDVSGVLPPVSILTKEQAAYHFLSGYTAKVGSTEIGSTSAIQSTFSTCFGAPFFPRPAGVYAELLMKRIESFGSQVYLVNTGWTGGPHGVGKRFDIPTTRAIVDAIVSGELKDVETVHLDTLNLAVPVAVTGVDSNLLNPINTWGDKALYTEYAQKLAEAFTKNFAKYQVSDAIRNAGPKA

Annotated regions:
phrase: LIGDDEHGWAPGGVF
type: CONSERVED_SITE
name: PEPCK_ATP_CS
description: Phosphoenolpyruvate carboxykinase (ATP), conserved site
Protein sequence:
MNRQEKSVEISELSKIFSSSGSVVVAHYKGISVAQIKDLRKKVREAGGGVKVAKNRLVKIAVSDTSLKGVSDLFVGQSLIVYSVDPIVAPKISVSFANDNKQFVVLGGILEKDILDQDSIKRIASLPNIDGIRSMIISAIQFNSTRLVNLLNAPQTKIVRAISAFVDKNQQS

Annotated regions:
phrase: KSVEISELSKIFSSSGSVVVAHYKGISVAQIKDL
type: CONSERVED_SITE
name: Ribosomal_uL10_CS_bac
description: Large ribosomal subunit protein uL10, conserved site, bacteria
Protein sequence:
MRNPAKQEDLIKAFKALLKEEKFSSQGEIVLALQEEGFENINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTTSPLKNLVLDVDHNDAVVVIHTSPGAAQLIARLLDSLGKSEGILGTIAGDDTIFVTPASSFTARQLYEAILSLFEQEL

Annotated regions:
phrase: LKNLVLDVDHNDAVVVIHTSPGAAQLIARLLDSLGKSEGILGTIAGDDTIFVTPASSFTARQLYEA
type: DOMAIN
name: Arg_repress_C
description: Arginine repressor, C-terminal

phrase: KQEDLIKAFKALLKEEKFSSQGEIVLALQEEGFENINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAEL
type: DOMAIN
name: Arg_repress_DNA-bd
description: Arginine repressor, DNA-binding domain
Protein sequence:
MEAEGMLPPQSLSAKFEGSFAYLTVRDRLPTILTKVVDTLHRNKDNFYKEYGEEGTEAEKRAISFLSRLRNELQTDKPVLALTDNAEDTQAWNEYMERQQDLMENGQLVSWFKSPWLYVECYMYRRIQEALYMNPPMHNFDPFKEGKTQSYFESQQAIKYLCTYLQELITNMENMTEIQLRENFLKLIQVSLWGNKCDLSISAGQDNSQKLSPIDSLPDLQRFILVDDSSMVWSTLVASQGSRSSGMKHARVDIILDNAGFELVTDLVLADFLISSGLAKQIRFHGKSIPWFVSDVTKQDFEWTIKQTMAANHKWMSASGVQWKHFMKEGTWSYHDHPFWTLPHEFCDMTVDAANLYSTLQTSDLILFKGDLNYRKLTGDRKWEHTVRFDQALRGFQPAPLCSLRTLKADVQVGLQAGHAEKLSTQDPDWMTNGKYAVVQFSSPHREQ

Annotated regions:
phrase: TVRDRLPTILTKVVDTLHRNKDNFYKEYGEEGTEAEKRAISFLSRLRNELQTDKPVLALTDNAEDTQAWNEYMERQQDLMENGQLVSWFKSPWLYVECYMYRRIQEALYMNPPMHNFDPFKEGKTQSYFESQQAIKYLCTYLQELITNMENMTEIQLRENFLKLIQVSLWGNKCDLSISAGQDNSQKLSPIDSLPDLQRFILVDDSSMVWSTLVASQGSRSSGMKHARVDIILDNAGFELVTDLVLADFLISSGLAKQIRFHGKSIPWFVSDVTKQDFEWTIKQTMAANHKWMSASGVQWKHFMKEGTWSYHDHPFWTLPHEFCDMTVDAANLYSTLQTSDLILFKGDLNYRKLTGDRKWEHTVRFDQALRGFQPAPLCSLRTLKADVQVGLQAGHAEK
type: DOMAIN
name: ARMT1-like_metal-bd
description: Damage-control phosphatase ARMT1-like, metal-binding domain
Protein sequence:
MGGKWSKSSIVGWPAIRERLRRTEPAADGVGAVSRDLEKYGAITSSNTAATNADCAWLEAQEDEDVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQEILDLWVYHTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPEEVEEANKGENNCLLHPMSLHGMEDPEKEVLAWRFDSHLALRHMARELHPEYYKDC

Annotated regions:
Protein sequence:
MPKLIILPHKILLPKGGVFNAMKGESILNVALRNNVEIEHACEKSCVCTTCHCYIWKGASSLSICEEKEEDVLDKAWNLQFNSRLSCQAKINNKDIEIEIPKYTINQ

Annotated regions:
phrase: CEKSCVCTTC
type: BINDING_SITE
name: Adrenodoxin_Fe-S_BS
description: Adrenodoxin, iron-sulphur binding site

phrase: PKGGVFNAMKGESILNVALRNNVEIEHACEKSCVCTTCHCYIWKGASSLSICEEKEEDVLDKAWNLQFNSRLSCQAKINNKDIEI
type: DOMAIN
name: 2Fe-2S_ferredoxin-type
description: 2Fe-2S ferredoxin-type iron-sulfur binding domain

phrase: PKLIILPHKILLPKGGVFNAMKGESILNVALRNNVEIEHACEKSCVCTTCHCYIWKGASSLSICEEKEEDVLDKAWNLQFNSRLSCQAKINNKDIEIEIPKY
type: DOMAIN
name: 2Fe-2S_ferredoxin-type
description: 2Fe-2S ferredoxin-type iron-sulfur binding domain

phrase: PKGGVFNAMKGESILNVALRNNVEIEHACEKSCVCTTCHCYIWKGASSLSICEEKEEDVLDKAWNLQFNSRLSCQAK
type: DOMAIN
name: 2Fe-2S_ferredoxin-type
description: 2Fe-2S ferredoxin-type iron-sulfur binding domain
Protein sequence:
MAKATTIKEALSRWEEKTGQKPSDAKEIKLYAQIPPIEKMDASLSTLGNCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLKGIHVMKKLKILYMSNNLVKDWAEFLKLAELPCLEDLVFVGNPLEEKHSAEGNWIDEATKRVPKLKKLDGTPVIKEDEEEES

Annotated regions:
phrase: TLEELWISYNFIEKLKGIHVM
type: REPEAT
name: Leu-rich_rpt
description: Leucine-rich repeat

phrase: TLEELWISYNFIEKLKGIHVMKKLKILYMSNNLVKDW
type: REPEAT
name: Leu-rich_rpt_4
description: Leucine rich repeat 4

phrase: NCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGL
type: REPEAT
name: Leu-rich_rpt_4
description: Leucine rich repeat 4

phrase: NLRILSLGRNNIKNLNGLEAV
type: REPEAT
name: Leu-rich_rpt
description: Leucine-rich repeat

phrase: NCEKLSLSTNCIEKIANLNGL
type: REPEAT
name: Leu-rich_rpt
description: Leucine-rich repeat
Protein sequence:
MAASGPGCRSWCLCPEVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQVYRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP

Annotated regions:
phrase: WQVYRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC
type: DOMAIN
name: Peptidase_S54_rhomboid_dom
description: Peptidase S54, rhomboid domain
Protein sequence:
MSVEEAALALWAKSGNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKASPVFQAGWEEGKERVQRAGLPFGELLDWVAHGVFTELFLRRLLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDPLWKEARRWLLEEVFRRLGAPLPPSQGNGEARPEAVLRVMALASFADWVASDPSLFPYGRDPRRGDYLKEALRLAQEALNRLGWPAFAKAQRREFGELFPYIPKPNALQESVPALLEGACTPVLLLVEAPMGMGKTEAALYAHHLLQAGLGHRGLYVALPTQATANGLFPRVRGFLERLGEGSRLELQLQHGTALLNPHYAGLLERAAPRQVGEEEEGGAVASAWFSARKRAMLAPYGVGTLDQALLGVLRVKHHFVRLWGLMNRVVVLDEVHAYDVYTSGLLQALLRWLRALGSSAVVMTATLPPSRRRALLEAWAGEEVEGQDLGPYPRVVLVGEGVKARSLPPAREVEVALEVLREVDVEPLAQRLKGALPGAVGAIVNTVDRAQDLYRALGEGTPLTLEELARRLGGISGGQAWEEVRQALPERGGEVVGKVLTDGTLVFLLHARFPAEERALRGSVVLALFGKGGPRPPRAILVATQVAEQSLDLDFDLLYTDLAPIDLLFQRSGRLHRHERPRPEEHARPRLLLGVPEDLDFGKPLYWDKVYEDYVLLATWRALSGRDRLRVPGDLEALLEEIYEGENPESFPEGLRERAKKSLKALQERRDREANTARRLSLSELDRLLAYWDEGALVAQERLEDDEEKAETQRLLTRLGDPSVAVVPLFRVGEGLFLDREGRRRAPLKGEVSREEAEALFRRAVRLSRFPLPQELLKEEPPPAWRKSGLLRGLRPLEVGRVFRSGERAFQVELDPELGVVYLPV

Annotated regions:
phrase: LLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKASPVFQAGWEEGKERVQRAGLPFGELLDWVAHGVFTELFLRRLLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDPLWKEARRWLLEEVFRRLGAPLPPSQGNGEARPEAVLRVMALASFADWVA
type: DOMAIN
name: CRISPR-assoc_Cas3_HD
description: CRISPR-associated Cas3-type, HD domain

phrase: RLGDPSVAVVPLFRVGEGLFLDREGRRRAPLKGEVSREEAEALFRRAVRLSRFPLPQELLKEEPPPAWRKSGLLRGLRPLEVGRVFRSGERAFQVELDPEL
type: DOMAIN
name: Cas3_C
description: Cas3, C-terminal

phrase: TLVFLLHARFPAEERALRGSVVLALFGKGGPRPPRAILVATQVAEQSLDLDFDLLYTDLAPIDLLFQRSGRLHRHE
type: DOMAIN
name: Cas3-like_dom
description: CRISPR-associated nuclease/helicase Cas3 domain

phrase: EFGELFPYIPKPNALQESVPALLEGACTPVLLLVEAPMGMGKTEAALYAHHLLQAGLGHRGLYVALPTQATANGLFPRVRGFLERLGEGSRLELQLQHGTALLNPHYAGLLERAAPRQVGEEEEGGAVASAWFSARKRAMLAPYGVGTLDQALLGVLRVKHHFVRLWGLMNRVVVLDEVHAYDVYTSGLLQALLRWLRALGSSAVVMTATLPPSRRRALLEAWAGEEVEGQDLGPYPR
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain

phrase: LLLVEAPMGMGKTEAALYAHHLLQAGLGHRGLYVALPTQATANGLFPRVRGFLERLGEGSRLELQLQHGTALLNPHYAGLLERAAPRQVGEEEEGGAVASAWFSARKRAMLAPYGVGTLDQALLGVLRVKHHFVRLWGLMNRVVVLDEVHAYDVYTSGLLQALLRWLRALGSSAVVMTATLPPSRRRALLEAWAGEEVEGQDLGPYPRVVLVGEGVKARSLPPAREVEVALEVLREVDVEPLAQRLKGALPGAVGAIVNTVDRAQDLYRALGEGT
type: DOMAIN
name: Helicase_Cas3_CRISPR-ass_core
description: Helicase Cas3, CRISPR-associated, core

phrase: SGNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKASPVFQAGWEEGKERVQRAGLPFGELLDWVAHGVFTELFLRRLLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDPLWKEARRWLLEEVFRRLGAPLPPSQGNGEARPEAVLRVMALASFADW
type: DOMAIN
name: CRISPR-assoc_Cas3_HD
description: CRISPR-associated Cas3-type, HD domain

phrase: WAKSGNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKASPVFQAGWEEGKERVQRAGLPFGELLDWVAHGVFTELFLRRLLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDPLWKEARRWLLEEVFRRLGAPLPPSQGNGEARPEAVLRVMALASFADWVASDPSL
type: DOMAIN
name: CRISPR-assoc_Cas3_HD
description: CRISPR-associated Cas3-type, HD domain
Protein sequence:
MLTHTLRAFFDCPHIAHVVSVIHPEDRHLYDEATGELGAKAIVITGGPTRQESTRLGLLALIEHQPDFVMIHDGVRPFIAQELLQRIIHALHPAIGVLPALAVSDTLKQAGPDAHVKATVSRAGLYAAQTPQAFPFAPILDAHESAYRVGRSDFTDDAAIAEWHGLAVRVVEGSADNTKLTWAKDIEMADKRFAQERGIFPDVRTGNGYDVHSFEPGDHVTLCGVEIPHTLKLSGHSDADVGLHALTDALLATRGAGDIGTHFPPSNPQWKGAPSRIFVEHAVKIVRESGGRIANADITLICEAPKIGPHREAMTAALSDMLGIAPDRVSVKATTNEKLGFVGRGEGIAAIATATVIYPGEVPE

Annotated regions:
phrase: RTGNGYDVHSFEPGDHVTLCGVEIPHTLKLSGHSDADVGLHALTDALLATRGAGDIGTHFPPSNPQWKGAPSRIFVEHAVKIVRESGGRIANADITLICEAPKIGPHREAMTAALSDMLGIAPDRVSVKATTNEKLGFVGRGEGIAAIATAT
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: SDADVGLHALTDALL
type: CONSERVED_SITE
name: MECDP_synthase_CS
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site

phrase: VRTGNGYDVHSFEPGDHVTLCGVEIPHTLKLSGHSDADVGLHALTDALLATRGAGDIGTHFPPSNPQWKGAPSRIFVEHAVKIVRESGGRIANADITLICEAPKIGPHREAMTAALSDMLGIAPDRVSVKATTNEKLGFVGRGEGIAAIATATVI
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: VMIHDGV
type: CONSERVED_SITE
name: ISPD_synthase_CS
description: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site

phrase: RTGNGYDVHSFEPGDHVTLCGVEIPHTLKLSGHSDADVGLHALTDALLATRGAGDIGTHFPPSNPQWKGAPSRIFVEHAVKIVRESGGRIANADITLICEAPKIGPHREAMTAALSDMLGIAPDRVSVKATTNEKLGFVGRGEGIAAIATAT
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: ADNTKLTWAKDIEMADKRFAQERGIFPDVRTGNGYDVHSFEPGDHVTLCGVEIPHTLKLSGHSDADVGLHALTDALLATRGAGDIGTHFPPSNPQWKGAPSRIFVEHAVKIVRESGGRIANADITLICEAPKIGPHREAMTAALSDMLGIAPDRVSVKATTNEKLGFVGRGEGIAAIATATV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: RTGNGYDVHSFEPGDHVTLCGVEIPHTLKLSGHSDADVGLHALTDALLATRGAGDIGTHFPPSNPQWKGAPSRIFVEHAVKIVRESGGRIANADITLICEAPKIGPHREAMTAALSDMLGIAPDRVSVKATTNEKLGFVGRGEGIAAIATATV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Protein sequence:
MSATPPIAPIATPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHALGEVMQHVHMHLPKPHDPFVDLVPAAGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLVDEINADGGIGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV

Annotated regions:
phrase: TPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHALGEVMQHVHMHLPKPHDPFVDLVPAAGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLVDEINADGGIGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGE
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREERRARFM
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALNENGKVIVTGCLGAKK
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: KISEGCNHRCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDF
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: AKKVGKTLKVLVDEINADGGIGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGE
type: DOMAIN
name: TRAM_dom
description: TRAM domain

phrase: LTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSA
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: PKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHALGEVMQHVHMHL
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: VGKTLKVLVDEINADGGIGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGE
type: DOMAIN
name: TRAM_dom
description: TRAM domain

phrase: LKISEGCNHRCTFCIIPSMR
type: CONSERVED_SITE
name: Methylthiotransferase_CS
description: Methylthiotransferase, conserved site
Protein sequence:
MPTRTSRRTFVKGLAASSILSGLGLWRSPAWALPNPGQPDGLSGTEFDLTIGETQVNITGNARTAMTINGGIPGPLLRWREGDTVTLRVKNRLDETTSIHWHGIILPANMDGVPGLSFDGIAPDGMYVYRFKVRQHGTYWYHSHSGFQEQSGVYGPLVIDAKEPEPFTYEREHVVMLTDWADEDPARVMKKLKKQSDYYNNNKRTVGDFINDVGEKGWSATTAERWMWAQMKMNPTDLADVSGATYTYLMNGQAPNMNWTGLFKPGEQIRLRFINGSSMTYFDVRIPGLKMTVVASDGLHIKPVVVDELRIAVAETFDVIVEPADGAYTLFAQSMDRTGFARGTLTSRPGMQAEVPPLDPRPLLSMDDMGMAGMDHGSMNHSAKPAMDGMDHSKMDHDSMPGMDHGTMPMQEAPVMQSHPDSERNNPLVDMQAMSTSAKLNDPGIGLRDNGRKVLTYADLRSTFEDPDGREPSRTIELHLTGHMEKFAWSFDGVKFSDAKPLMLKYGERVRIVLVNDTMMTHPIHLHGMWSDLEDENGQFMVRKHTIDMPPGSRRSYRVTADALGRWAYHCHMLYHMEMGMFREVRVEE

Annotated regions:
phrase: EFDLTIGETQVNITGNARTAMTINGGIPGPLLRWREGDTVTLRVKNRLDETTSIHWHGIILPANMDGVPGLSFDGIAPDGMYVYRFKVRQHGTYWYHSHSGFQEQSGVYGPLVI
type: DOMAIN
name: CuRO_1_CopA
description: Copper resistance protein, first cupredoxin domain

phrase: HCHMLYHMEMG
type: BINDING_SITE
name: Cu_oxidase_Cu_BS
description: Multicopper oxidase, copper-binding site

phrase: EHVVMLTDWADEDPARVMKKLKKQSDYYNNNKRTVGDFINDVGEKGWSATTAERWMWAQMKMNPTDLADVSGATYTYLMNGQAPNMNWTGLFKPGEQIRLRFINGSSMTYFDVRIPGLKMTVVASDGLHIKPVVVDELRIAVAETFDVIVEPADGAYTLFAQS
type: DOMAIN
name: Cu-oxidase_2nd
description: Multicopper oxidase, second cupredoxin domain

phrase: MNPTDLADVSGATYTYLMNGQAPNMNWTGLFKPGEQIRLRFINGSSMTYFDVRIPGLKMTVVASDGLHIKPVVVDELRIAVAETFDVIVEPADGAYTLFAQSMDRTGFARGT
type: DOMAIN
name: CuRO_2_CopA
description: Copper resistance protein CopA, second cupredoxin domain

phrase: IGETQVNITGNARTAMTINGGIPGPLLRWREGDTVTLRVKNRLDETTSIHWHGIILPANMDGVPGLSFDGIAPDGMYVYRFKVRQHGTYWYHSHSGFQEQSGVYGPLVIDAK
type: DOMAIN
name: Cu-oxidase-like_N
description: Multicopper oxidase-like, N-terminal

phrase: TSRRTFVKGLAASSILSGLGLWRSPAW
type: CONSERVED_SITE
name: TAT_signal_bac_arc
description: Twin-arginine translocation pathway, signal sequence, bacterial/archaeal

phrase: EPSRTIELHLTGHMEKFAWSFDGVKFSDAKPLMLKYGERVRIVLVNDTMMTHPIHLHGMWSDLEDENGQFMVRKHTIDMPPGSRRSYRVTADALGRWAYHCHMLYHMEMGMFREVRV
type: DOMAIN
name: Cu-oxidase_C
description: Multicopper oxidase, C-terminal

phrase: MPTRTSRRTFVKGLAASSILSGLGLWRSPAW
type: CONSERVED_SITE
name: TAT_signal
description: Twin-arginine translocation pathway, signal sequence

phrase: RTIELHLTGHMEKFAWSFDGVKFSDAKPLMLKYGERVRIVLVNDTMMTHPIHLHGMWSDLEDENGQFMVRKHTIDMPPGSRRSYRVTADALGRWAYHCHMLYHMEMGMFREVR
type: DOMAIN
name: CuRO_3_CopA
description: Copper resistance protein, third cupredoxin domain

phrase: GRWAYHCHMLYHMEMGMFRE
type: CONSERVED_SITE
name: Cu_oxidase_CS
description: Multicopper oxidases, conserved site
Protein sequence:
MSSLLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQIRSLCQLLRSTGLSCPLVLIVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLATGRQQLGGDDSPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKPEKGEKSDKSEKAERAEKAERAETPGKAAAETNEAAGARSSKV

Annotated regions:
phrase: SLLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQIRSLCQLLRSTGLSCPLVLIVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRL
type: DOMAIN
name: GlnR_N
description: Transcription regulator GlnR, N-terminal domain

phrase: RVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYR
type: DOMAIN
name: OmpR/PhoB-type_DNA-bd
description: OmpR/PhoB-type DNA-binding domain

phrase: GRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYR
type: DOMAIN
name: OmpR/PhoB-type_DNA-bd
description: OmpR/PhoB-type DNA-binding domain

phrase: LSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYR
type: DOMAIN
name: OmpR/PhoB-type_DNA-bd
description: OmpR/PhoB-type DNA-binding domain

phrase: PMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFV
type: DOMAIN
name: OmpR/PhoB-type_DNA-bd
description: OmpR/PhoB-type DNA-binding domain
Protein sequence:
MLDDYYTWTYPDIPENVAQELLQLNGSLVVVGVVGRSDCDLANKMLAFGMEPPDDHTPEDGQIQCYYKPGTFSLLLHFESTYDAEISGQMIDVCIEDVDTPFDIDSFFERIRCRFVRMMLLALHVCHIVVYVENGLTFDPTLLTVFQLAKFAREQHLMQFLPQMLRETPAARISERTRLCAPRILFLFENFPGDEPKTRESVSTCEFQMEDCIYELLGRYNIVTNSSSNSLVALPNNKQFVFFNAHEELRDDKLLKAIDCLNETMYKPDLKEEEEDLEILAMAPFDGFVKPFTMPVYEKEWENLQYQEDHTVWNFLQRHVQDALVGCFDAGSFKQHAQQGPFQLLNSQEWHDCMATMHKLLVENAKDPDHETSNEEYKLFLKNFDEDLNYEKKFWAHLCELGLKKGIAAYKNAAPANYGTATHRQLLADATLAFEEEGRGPQAQAALAKLAAICHNHWEDGRQQCELLSLRSHPCTLPKNMPHEKHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYELIAQMCNLCVKVKQYQFPIFEPSVSDYRAAAFEAAFPLLNTGKSGAPQDEDAGEDEAEEEEGQERELPTKKKLQNTASNCCSHPLSPTFGSDLNMSIAGFGASLKESQASSEQLSNSEQNTTSSGTSSADTENELVVELQEPAKKEAREDVGPTDAVSTSTTEYLPGLVHTVSNFGLLPLFPSWSLACVGPSSIYSHNTGLQEHFQSGFLSGANFLLPWDVQLRLVHALKQQYQQQHHGKKQQRWKKQGDRLSLKIFVGMEYECSRGHRFMMCAPDRVLRGGADIERDTCSKVVHNNMPLYYPCPCRSQRNFLAQLMRIHVVTPKAPVNIIVDPKVCVGRYTFTLGSIVPPRLSQSAYWIIRLPYVYQGDDVLIAPPDHLDPDYPLAGGYLLPGMFGVVETDPTLDLNEPGMMGASAAGNFTRI

Annotated regions:
Protein sequence:
MKDFYYETTYILRADLTEEQVEQAIAKYQTPLTEAGAEVQDTQHRGKRRLAYLINKQREGIYVQINYTGDGSQIAPLERALRLSEEVLRFLTVKQEVRPPAPVAVEA

Annotated regions:
phrase: GKRRLAYLI
type: CONSERVED_SITE
name: Ribosomal_bS6_CS
description: Small ribosomal subunit protein bS6, conserved site
Protein sequence:
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQDDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQTLEQYDIIVTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRSNGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQEARGNKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG

Annotated regions:
phrase: CIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQEARGNKAWTPKNRERQVSFALRAYASLATSADKG
type: DOMAIN
name: ILV_EDD_C
description: Dihydroxy-acid/6-phosphogluconate dehydratase, C-terminal

phrase: ALITDGRFSGG
type: CONSERVED_SITE
name: DiOHA_6PGluconate_deHydtase_CS
description: Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site

phrase: CDKITPGMLM
type: CONSERVED_SITE
name: DiOHA_6PGluconate_deHydtase_CS
description: Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site

phrase: KPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQDDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLT
type: DOMAIN
name: ILV_EDD_N
description: Dihydroxy-acid/6-phosphogluconate dehydratase, N-terminal