nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MVKSAPQNIRTLSLSDLEQYFEELGEKKFRAKQVYEWIWQKSALSVDAMTNLSKELRQRLKEDFTLPALSIDATQYSADGTVKSRFKTHDGHLVEGVLIPTEERKTACVSSQIGCSLSCKFCATGYLPRKRNLEFDEIYDEVVLINQQSERIYGKKLTNIVFMGMGEPLLNYKNVLRAIDRITSPDGLGMSPRRITVSTAGVAKQIRQLGDNKVKFKLALSLHAANDIKRHEIMPINDTNNIKSLIDALNYFYKHTKNEITFEYILFKNFNDSLKDADELIKIYRQVPADLVNIIEYNPIEFARFEKPDEEKVEAFMQYLEKNRVNARLRRSRGKDIDAACGQLANKDQ

Annotated regions:
phrase: SQIGCSLSCKFCATGYLPRKRNLEFDEIYDEVVLINQQSERIYGKKLTNIVFMGMGEPLLNYKNVLRAIDRITSPDGLGMSPRRITVSTAGVAKQIRQLGDNKVKFKLALSLHAANDIKRHEIMPINDTNNIKSLIDALNYFYKHTKNEITFEYILFKNFNDSLKD
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: TEERKTACVSSQIGCSLSCKFCATGYLPRKRNLEFDEIYDEVVLINQQSERIYGKKLTNIVFMGMGEPLLNYKNVLRAIDRITSPDGLGMSPRRITVSTAGVAKQIRQLGDNKVKFKLALSLHAANDIKRHEIMPINDTNNIKSLIDALNYFYKHTKNEITFEYILFKNFNDSLKDADELIKIYRQVPADLVNIIEYNPIEFARFEKPDEEKVEAFMQYLEKNRVNARLRRSRGK
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: KTACVSSQIGCSLSCKFCATGYLPRKRNLEFDEIYDEVVLINQQSERIYGKKLTNIVFMGMGEPLLNYKNVLRAIDRITSPDGLGMSPRRITVSTAGVAKQIRQLGDNKVKFKLALSLHAANDIKRHEIMPINDTNNIKSLIDALNYFYKHTKNEITFEYILFKNFNDSLKDADELIKIYRQVPADLVNIIEYNPIEFARFEKPDEEKVEAFMQ
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: NIRTLSLSDLEQYFEELGEKKFRAKQVYEWIWQKSALSVDAMTNLSKELRQRLKED
type: DOMAIN
name: RlmN_N
description: Dual-specificity RNA methyltransferase RlmN, N-terminal domain

phrase: KSAPQNIRTLSLSDLEQYFEELGEKKFRAKQVYEWIWQKSALSVDAMTNLSKELRQRLKEDFTLPALSIDATQYSADGTVKSRFKTHDGHLVEGVLIPTEERKTACVSSQIGCSLSCKFCATGYLPRKRNLEFDEIYDEVVLINQQSERIYGKKLTNIVFMGMGEPLLNYKNVLRAIDRITSPDGLGMSPRRITVSTAGVAKQIRQLGDNKVKFKLALSLHAANDIKRHEIMPINDTNNIKSLIDALNYFYKHTKNEITFEYILFKNFNDSLKDADELIKIYRQVPADLVNIIEYNPIEFARFEKPDEEKVEAFMQYLEKNRVNARLRRSRGKDIDAACGQLANK
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MDAWKEITKTTENDGVSTCSLSSIAFDPYSELVWTGHKNGQIKSSFGPSLTSYTQFIGHEGPVHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYQDSDCIDYRAMFYQSRNNPEVVIGGYHQKLTVVNAERGISIHKDKNVSDIFIMRRNRLLCCGSTNGEIILRDPNSFQPVNKVVAHTGTISDIDTSGNLLLSCGYSLRHGTYMLDPFVKVWDLRNLSSLVPIPFPAGPTIIRMHPKLSTTAVVCSCSGQFHIVDTGNPLDAKLMQIPLTSYLTGMDIASTGDAMVFTDVEDNIHLWSPLENPSFSDLKLPIQLPNTSTETVQLENNDPLNSIGLPYYKDELLSSWSKYLIFDVGKPILDSNLLIAKQISENSHPVPQEIKSFHRNQIIEVPWLNRKLISEGATPKFHSERQKDIMSGNDIEGSASYFEEIEDTISGPDSIPKFYQRPVIKYSKFGIEDFDFGFYNKTKYAGLETDITNSYCNSVLQLLSYVPSFSKAAISHSLGPCDLMECLLCELGFLFAMLKESTGRNCQATNFLRAFSNSSFAQSLGIVFDDYSDGTFPDSFVIQKFTKFMLTEISRIADYEDKKDGTSFPVSFLLKSFCIPEMQTYRCGICGITSQKIKSSLYIIDLHYPSQQLESILSFEWLFKMSLDRRVDLPPGWCEYCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHWKLWARKNWLPKKLHLRRVNDTMQCVSQKISNLDKDQQSLSVYVLRGIIYEIRQNGEEPHFVSTIRVSD

Annotated regions:
phrase: AGLETDITNSYCNSVLQLLSYVPSFSKAAISHSLGPCDLMECLLCELGFLFAMLKESTGRNCQATNFLRAFSNSSFAQSLGIVFDDYSDGTFPDSFVIQKFTKFMLTEISRIADYEDKKDGTSFPVSFLLKSFCIPEMQTYRCGICGITSQKIKSSLYIIDLHYPSQQLESILSFEWLFKMSLDRRVDLPPGWCEYCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHWKLWARKNWLPKKLHLRRVNDTMQCVSQKISNLDKDQQSLSVYVLRGIIYEIRQNGEEPHFVSTIRV
type: DOMAIN
name: PAN2_UCH_dom
description: PAN2, UCH domain

phrase: AGLETDITNSYCNSVLQLLSYVPSFSKAAISHSLGPCDLMECLLCELGFLFAMLKESTGRNCQATNFLRAFSNSSFAQSLGIVFDDYSDGTFPDSFVIQKFTKFMLTEISRIADYEDKKDGTSFPVSFLLKSFCIPEMQTYRCGICGITSQKIKSSLYIIDLHYPSQQLESILSFEWLFKMSLDRRVDLPPGWCEYCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHWKLWARKNWLPKKLHLRRVNDTMQCVSQKISNLDKDQQSLSVYVLRGIIYEIRQNGEEPHFVSTIRVS
type: DOMAIN
name: USP_dom
description: Ubiquitin specific protease domain

phrase: LSSIAFDPYSELVWTGHKNGQIKSSFGPSLTSYTQFIGHEGPVHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYQDSDCIDYRAMFYQSRNNPEVVIGGYHQKLTVVNAERGISIHKDKNVSDIFIMRRNRLLCCGSTNGEIILRDPNSFQPVNKVVAHTGTISDIDTSGNLLLSCGYSLRHGTYMLDPFVKVWDLRNLSSLVPIPFPAGPTIIRMHPKLSTTAVVCSCSGQFHIVDTGNPLDAKLMQIPLTSYLTGMDIASTGDAMVFTDVEDNIHLW
type: DOMAIN
name: PAN2_N
description: PAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminal
Protein sequence:
MKNTSAFAWTKDDEQIAWLTIDVPNEKMNTLQAAFAEQVTQVLDEIEEQQAHIKGLVIQSGKPDNFIAGADINMIANCQNASEAQALAEKGQHLFQRIEDLPFATVAAIHGPCLGGGLELALACDYRVCSDDNKTKLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDIILTGKQLRPKTALKLGVVDASVPHTILSRIAADFALKKKAKRKLTAKEWGLSRNPLGRNVIFSQAEKQAQKKARGNYPAIAAILDCIEHGLDKGMKKGLQREAEQFARLAMTPESAALRSLFFAMTEMKKEKGSDAEPKSIDYVGVLGGGLMGGGIAHVSIAKAKKKVTIKDINNDGLLNAYQYHYQRLDTLRKRRIISKAQLQQQMLQLTGVTEFDGFKKLDVVVEAVFEDLNLKQEMVKAVQEQGKEDVIFATNTSSLPIGQIAEGAQKPENIVGLHYFSPVEKMPLVEVIPHATTSDETISTVVALAKQQGKTPIVVKDSAGFYVNRILAPYMNEAARLLLAGEPIEVLDEALLDFGFPVGPISLLDEVGVDIGAKIMPILEAELGDRFRSPDVFQTLIDDKRLGKKTKRGFYVYKGKKKEPDQEVYTLLNIKPQSQLSKNEIAMRCVLPMLAEAKRCLDEGIIASERDGDIGAIFGIGFPPFLGGPFTYMNTLGEEKLATLMRNYADKYGDRFIE

Annotated regions:
phrase: VGVLGGGLMGGGIAHVSIAKAKKKVTIKDINNDGLLNAYQYHYQRLDTLRKRRIISKAQLQQQMLQLTGVTEFDGFKKLDVVVEAVFEDLNLKQEMVKAVQEQGKEDVIFATNTSSLPIGQIAEGAQKPENIVGLHYFSPVEKMPLVEVIPHATTSDETISTVVALAKQQGKTPIVVK
type: DOMAIN
name: 3-OHacyl-CoA_DH_NAD-bd
description: 3-hydroxyacyl-CoA dehydrogenase, NAD binding

phrase: GFYVNRILAPYMNEAARLLLAGEPIEVLDEALLDFGFPVGPISLLDEVGVDIGAKIMPILEAELGDRFRSPDVFQTLIDDKRLGKKTKRGFYV
type: DOMAIN
name: 3HC_DH_C
description: 3-hydroxyacyl-CoA dehydrogenase, C-terminal

phrase: VAAIHGPCLGGGLELALACD
type: CONSERVED_SITE
name: Enoyl-CoA_hyd/isom_CS
description: Enoyl-CoA hydratase/isomerase, conserved site

phrase: DSAGFYVNRILAPYMNEAARLLLAG
type: CONSERVED_SITE
name: 3-OHacyl-CoA_DH_CS
description: 3-hydroxyacyl-CoA dehydrogenase, conserved site
Protein sequence:
MDGRTRMQIDFAHQPPSRVGIEWELACVDRGSGELAGVAPEILRSFPHDDAHPHVTGEFLTNTVEVVSAPHSRVGHAVDDLARLIERVVDVADPLGIDLMCAGTHPFSAWPDQDVTPDNERYATLLDRTRWWGRQMMIWGVHVHVGIDDASKALPILNALLVHLPRFQALSASSPFWSGQETGYASNRALMFQQLPTAGLPPDLTTWADYERLVGDMTHVGVIDHHSELRWDIRPAPKWGTLETRVFDGVSTLGEIASLAALVQCLVHDMSAALDRGEELPRMQPWFVRENKWRAARYGMDAIIIQDAAGDEALVGDDTRALVERLSPTADALGCEAELRGILDIVDRGASYQRQLRVAEENDGALAPVVTHLVEELRSGLGR

Annotated regions:
Protein sequence:
MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN

Annotated regions:
phrase: RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHE
type: DOMAIN
name: MethylDNA_cys_MeTrfase_DNA-bd
description: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding

phrase: IPCHRV
type: ACTIVE_SITE
name: MethylDNA_cys_MeTrfase_AS
description: Methylated-DNA-[protein]-cysteine S-methyltransferase, active site

phrase: FTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHE
type: DOMAIN
name: MethylDNA_cys_MeTrfase_DNA-bd
description: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding

phrase: TRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAH
type: DOMAIN
name: MethylDNA_cys_MeTrfase_DNA-bd
description: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding

phrase: MKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPV
type: DOMAIN
name: MethylG_MeTrfase_N
description: Methylguanine DNA methyltransferase, ribonuclease-like domain
Protein sequence:
MPRSQRNDNFIDKTFTLVADTSLQVIPTTQGEKKAFTYYRDGMSAQSEGEYAEASQNYYEAMRLEIDPYDRSYILHNIGLIHTSNGEHARALEYYFQALERNPSLPQAFNNMAVICHYRGEQAIQQGDFETSEAWFGKAADHWKQAVLLAPGNYIEAQNWLKITGRLKD

Annotated regions:
phrase: SYILHNIGLIHTSNGEHARALEYYFQALERNPS
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: AFTYYRDGMSAQSEGEYAEASQNYYEAMRLEID
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: AFTYYRDGMSAQSEGEYAEASQNYYEAMRLEID
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: AVICHYRGEQAIQQGDFETSEAWFGKAADHWKQ
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: SYILHNIGLIHTSNGEHARALEYYFQALERNPS
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat

phrase: YILHNIGLIHTSNGEHARALEYYFQALERNP
type: REPEAT
name: TPR_rpt
description: Tetratricopeptide repeat
Protein sequence:
MRKPSITITTAKAIITPDYTLIKSHSKYQLPSRFQKLDADSPERSTVVKLFYRRFMRLKPFISNVKMVKDTYRDYVRYKFMKENYELKRYLVFNPDGLRSKIKLELLSNTKCCERILPVTEMQRTLEFVLKSCSYLPETKVQKWDIARDNTYCRQILKNLLTMQYEKYRSILHRGIGHDELDVKFSHLKTTSSPLTKLNKTEKKKIPLFKVFSDFDTTLIYLNETLGTRL

Annotated regions:
Protein sequence:
MSTGQEEHLDSKLENQISEEENQSQNQNFPTAIEDSIQASIEKLDEVDDEINPIEVKDEFPTTIGTTYDILHPREPFPKRIKLEETETEPDSNGIADNDQTMVVVPPKKPQLFYTPLKTGLVYDVRMRYHAKVFTSYSEYIDPHPEDPRRIYRIYKKLVEAGIVLDPSLAGINEIGPFMLKIPIREATSEEILQVHSEDHLKFIQSTEDMSRDQLLKETETGDSIYVNNDSYLSAKLSCGGTIEACKAVIEGRVKNSLAIVRPPGHHAEPNTPAGFCLFSNVAVAAKNMLKNYPESVRRIVIVDWDIHHGNGTQKAFYNDPRVLYISLHRFENGKFYPGTKYGDLNQVGEGPGEGFTINIPWRSSGMHDGDYVYAFNKIIQPVISEFDPDLIIVSSGFDAADGDVIGACHVTPAGYGYMTHTLKGIARGKLAVILEGGYNLDSISKSALAVAKVLVGEPPENTITLRPQAEAIEVVDEVIKIQSKYFKSLRNGIPNGIFEDVYDLADVEKSNYKLVNIADPIRSHQVEKLFNEKEFINIPIISSPSNGEKPPFTTDLPDQLEDLIVASPDIYNCTTIILTIHDPPEIWANINPTNGVIETNSTMVLEHPLVQIMDKIQKEKDPENQEKFGYLDINIPSFQLPIPGTTSESSTYNPIIFAQEVLLYIWDNYIAYFQQLKNLVMVGFGDSYQSIVNLYGKRPSNEIKDLIKGTVAFLNRTTLKPLIPVMDESMVDWYYQNSIIFTSNFNTCWTGGSGAGNGNGNGNGNNG

Annotated regions:
phrase: IADPIRSHQVEKLFNEKEFINIPIISSPSNGEKPPFTTDLPDQLEDLIVASPDIYNCTTIILTIHDPPEIWANINPTNGVIETNSTMVLEHPLVQIMDKIQKEKDPENQEKFGYLDINIPSFQLPIPGTTSESSTYNPIIFAQEVLLYIWDNYIAYFQQLKNLVMVGFGDSYQSIVNLYGKRPSNEIKDLIKGTVAFLNRTTLKPLIPVMDESMVDWYYQNSIIFTSNFNTCW
type: DOMAIN
name: Arb2-like_domain
description: Arb2-like domain

phrase: HPEDPRRIYRIYKKLVEAGIVLDPSLAGINEIGPFMLKIPIREATSEEILQVHSEDHLKFIQSTEDMSRDQLLKETETGDSIYVNNDSYLSAKLSCGGTIEACKAVIEGRVKNSLAIVRPPGHHAEPNTPAGFCLFSNVAVAAKNMLKNYPESVRRIVIVDWDIHHGNGTQKAFYNDPRVLYISLHRFENGKFYPGTKYGDLNQVGEGPGEGFTINIPWRSSGMHDGDYVYAFNKIIQPVISEFDPDLIIVSSGFDAADGDVIGACHVTPAGYGYMTHTLKGIARGKLAVILEGGYNLDSISKSALAVAK
type: DOMAIN
name: His_deacetylse_dom
description: Histone deacetylase domain
Protein sequence:
MKNISILGATGSIGTQTLDVIRNDSEAFKLLAVSAHSNFKKMIEIIDEFKPELVVMVDKLAYNKVLDYCCEKKLKTSVKVGYEAFNEVASYKDSNIVVTSIVGMIGLIPTLEAIKAGKDIALANKETLVVAGELVTKEAKKYGVNILPVDSEHGAIFQCLQGNKYKDINKILLTASGGPFRGKSFDELNNVTLNDALNHPKWTMGRKITIDSATLMNKGLEVIEAHWLFNVDYEKIQVLVHPQSIVHSMVQYKDGSVIAQLGPTDMRLPIQYALNYPVRKERIVEPVDFYSTPDLHFEKPDMDTFRCLRLAYDAGMAGGIMPAILNSANEYAVDLFLKDKIKFTNIQEIIEDALNHFENVNNLTANTIINKSNEVTKYLKGKIGF

Annotated regions:
phrase: ISILGATGSIGTQTLDVIRNDSEAFKLLAVSAHSNFKKMIEIIDEFKPELVVMVDKLAYNKVLDYCCEKKLKTSVKVGYEAFNEVASYKDSNIVVTSIVGMIGLIPTLEAIKAGKDIALANKETLVVA
type: DOMAIN
name: DXP_reductoisomerase_N
description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal

phrase: ILPVDSEHGAIFQCLQGNKYKDINKILLTASGGPFRGKSFDELNNVTLNDALNHPKWTMGRKITIDSATLMNKGLEVIEAHWL
type: DOMAIN
name: DXP_reductoisomerase_C
description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal

phrase: LGPTDMRLPIQYALNYPVRKERIVEPVDFYSTPDLHFEKPDMDTFRCLRLAYDAGMAGGIMPAILNSANEYAVDLFLKDKIKFTNIQEIIEDALNHFENVNNLTANTIINKSNE
type: DOMAIN
name: DXPR_C
description: DXP reductoisomerase, C-terminal domain
Protein sequence:
MSDAEEQEYEEEQPEEEEAAEEEEAPEEPEPVAEREEERPKPSRPVVPPLIPPKIPEGERVDFDDIHRKRMEKDLLELQTLIDVHFEQRKKEEEELVALKERIERRRAERAEQQRFRTEKERERQAKLAEEKMRKEEEEAKKRAEDDAKKKKVLSNMGAHFGGYLVKAEQKRGKRQTGREMKQRILSERKKPLNIDHMGEDQLREKAQELSDWIHQLESEKFDLMAKLKQQKYEINVLYNRISHAQKFRKGAGKGRVGGRWK

Annotated regions:
Protein sequence:
MKKRALVSVSDKTGVVEFVKGLLEQGIEVISTGGTKKLLEENGLQVIGISEVTGFPEIMDGRVKTLHPNIHGGLLAVRDNEMHVAQMNELGIQPIDFVVVNLYPFKETIAKPDVTFADAIENIDIGGPTMIRSAAKNHKFVSVIVDPVDYDVVLAELKENGEVTEETKRKLAAKVFRHTAAYDALISNYLTKQMGEESPETVTVTFEKKQDLRYGENPHQKATFYKAPFAATSSVAYAEQLHGKELSYNNINDADAALSIVKEFTEPAVVAVKHMNPCGVGVGADIHEAYTRAYEADPVSIFGGIIAANREIDKATAEKLHEIFLEIVIAPSFSQEALEVLQSKKNLRLLTVNIEKATSASKKLTSVQGGLLVQEEDTLSLDEDAISIPTKREPSEQEWKDLKLAWKVVKHVKSNAIVLANDNMTVGVGAGQMNRVGSAKIAITQAGEKAQGSALASDAFFPMPDTVEEAAKAGITAIIQPGGSIRDEDSIKMADAYGITMVFTGVRHFKH

Annotated regions:
phrase: MKKRALVSVSDKTGVVEFVKGLLEQGIEVISTGGTKKLLEENGLQVIGISEVTGFPEIMDGRVKTLHPNIHGGLLAVRDNEMHVAQMNELGIQPIDFVVVNLYPFKETIAKPDVTFADAIENIDIGGPTMIRSAAKNHKFVSVI
type: DOMAIN
name: MGS-like_dom
description: Methylglyoxal synthase-like domain

phrase: GVVEFVKGLLEQGIEVISTGGTKKLLEENGLQVIGISEVTGFPEIMDGRVKTLHPNIHGGLLAVRDNEMHVAQMNELGIQPIDFVVVNLYPFKETIAKPDVTFADAIENIDIGGP
type: DOMAIN
name: MGS-like_dom
description: Methylglyoxal synthase-like domain

phrase: GVVEFVKGLLEQGIEVISTGGTKKLLEENGLQVIGISEVTGFPEIMDGRVKTLHPNIHGGLLAVRDNEMHVAQMNELGIQPIDFVVVNLYPFKETIAKPDVTFADAIENIDIGGP
type: DOMAIN
name: MGS-like_dom
description: Methylglyoxal synthase-like domain
Protein sequence:
MLIPRKVKHRKQHHPRQRGIASGGTSVSFGDYGIQAMGHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKIAREALTRAIHKLPIKARIVTREEQF

Annotated regions:
phrase: GTSVSFGDYGIQAMGHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKIAREALTRAIHKLPIKARI
type: DOMAIN
name: Ribosomal_uL16_dom
description: Large ribosomal subunit protein uL16 domain

phrase: KRGGKVWINIF
type: CONSERVED_SITE
name: Ribosomal_uL16_CS
description: Large ribosomal subunit protein uL16, conserved site

phrase: RMGSGKGSPEW
type: CONSERVED_SITE
name: Ribosomal_uL16_CS
description: Large ribosomal subunit protein uL16, conserved site
Protein sequence:
MTNELQIASHLLRSRIGKICAAILGSNAEEMLTRASEVLQDTSFIEFRLDYLSKPAAALTTIGEFLASNGAITAIATCRPKEFGGQFDGSSKASLDILLAAAEAGFQVVDVDIDSLEKLPGDTMSRLRATGAGVIISWHDFHETKDLDAVAKRIQAFEPDFMKVVPTARNLADNLVLMDFIKRWEDQTNAEIVGICMGEAGTISRILSLRAGSAFTFAAATKGEETAPGQLSARSLVETYRIDTVDAATKVFGVAGNPIGSSMSPLMLNTAFRRETVNAVYLALQTSNAQDLFKLVKEIPLQGLSVTMPLKQDVIPFLERTDALSTKIGAVNTISRMADGKWYGFNTDVHGIVGPLEKRMSLKGAKVLVLGAGGAARAAVFGCRDKGAEVWILNRTPETAAKLAKQSGAKVIKREAVAKTGFDVIINATPVGMNGNKSPQLLGPEDLTAKLVFDTVYNPLETPLLRMARQKGIHVITGIEMFVQQGARQFEIWTGKPAPEEEMLRVVLHALRQAAEAAGEVAAPALAPASRIQTAAAEAAAPPPPPPAPAPVEPVKPVAVKAAAKPAPVKAAAPAPAKAPVPPAAPAKAAPPKTGVNGSKPAAKVEAKPAPAKPVAAAKVAPKVPTKVTTKITATVTKKAAPAAKAVAKKPVVAKPVAKAIAKPLAKAKPAAKAKPTVKAKAKAR

Annotated regions:
phrase: SLKGAKVLVLGAGGAARAAVFGCRDKGAEVWILNRTPETAAKLAKQSGAKVIKREAVAKTGFDVIINA
type: DOMAIN
name: Shikm_DH/Glu-tRNA_Rdtase
description: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase

phrase: VAGNPIGSSMSPLMLNTAFRRETVNAVYLALQTSNAQDLFKLVKEIPLQGLSVTMPLKQDVIPFLERTDALSTKIGAVNT
type: DOMAIN
name: Shikimate_DH-bd_N
description: Shikimate dehydrogenase substrate binding, N-terminal

phrase: GIEMFVQQGARQFEIWTGKPAPEEEMLRVV
type: DOMAIN
name: SDH_C
description: SDH, C-terminal
Protein sequence:
MLQSSNHHYLRPDYMTAAAAPTAQLDNKSSPLALLAQTCSAIGADTTNPKLLAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSHSSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCGATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLRRTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAAAAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPGYGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATPNVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQGGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGKRFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSPLSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSSHP

Annotated regions:
phrase: YVCSWIGSDAAYCGKRFGTSDDLFQHLRTHTASV
type: DOMAIN
name: Znf_C2H2_type
description: Zinc finger C2H2-type
Protein sequence:
MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPSLRMKWMMAMKYPITADKRITEMVPERNEQGQTLWSKMSDAGSDRVMVSPLAVTWWNRNGPMTSTVHYPKVYKTYFDKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKISPLMVAYMLERELVRKTRFLPVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGTRMMDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAIIRKATRRLVQLIVSGRDEQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMIGVLPDMTPSTEMSMRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEDPDEGTSGVESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN

Annotated regions:
phrase: SSSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAIIRKATRRLVQLIVSGRDEQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMIGVLPDMTPSTEMSMRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTI
type: DOMAIN
name: Flu_PB2_CAP-bd
description: Influenza RNA polymerase PB2, CAP binding domain

phrase: STVHYPKVYKTYFDKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKISPLMVAYMLERELVRKTRFLPVAGGTSSVYIEVLHLTQGTCWEQMYTPG
type: DOMAIN
name: Flu_PB2_middle
description: Influenza RNA polymerase PB2, middle domain

phrase: MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYT
type: DOMAIN
name: Flu_PB2_N
description: Influenza RNA polymerase PB2, N-terminal region

phrase: GRQEKNPSLRMKWMMAMKYPITADKRITEMVPERNEQGQTLWSKMSDAGSDRVMVSPLAVTWWNRNG
type: DOMAIN
name: Flu_PB2_2nd
description: Influenza RNA polymerase PB2, second domain

phrase: VRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGTRMMDILRQNPTEEQAVDICKAAMGLR
type: DOMAIN
name: PB2_helical
description: Polymerase basic protein 2, helical domain

phrase: TSGVESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRM
type: DOMAIN
name: Flu_PB2_C
description: Influenza RNA polymerase PB2, C-terminal domain

phrase: YSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEDP
type: DOMAIN
name: Flu_PB2_6th
description: Influenza RNA polymerase PB2, sixth domain
Protein sequence:
MLLDKLSVLSFLGLAPIFAAAQLSGSVGPLTSASTKAATKTCNVLDYGAKADKSTDLGAPLASAFADCKSGGLVYVPSGDYALSTWARLSGGEAWALQIDGIIYRTGTDGGNMIYIEHSSDFELFSSTSEGAMQGLGYEFHADDNWSGPRLLRLYEVTDFSVHDFILVDSPSFHFSLDTCTNGEIYNMAIRGGNHGGLDGIDVWSNNIWVHDVEVTNKDECVTVKGPSKNILIESIYCNWSGGCGMGSFGSDTNVSDITYRNIYTWSSNNMMLIKSNGGSGFVENVLLENFIGHGNAYSLDIDSYWASMSAVDGDGVQLSNITVKNWKGTEAYGAERGPVKVVCADGAPCYDITIEDFAMWTEEGDSQWYSCESAYGSGYCLQDSDDHVSYSVTTSTVSSAPSGYSATSMAADLTTDFGSTVSIPIPTIPTSFYPGATPYSALMANSASTAAASSIASHATVHSSSASVAASVPSAVAPSESIPAATSAVVSSAAAIAPSPAVGAQEGSTTSAPSFAAPSGAGNSPQGPTGASGFGEKGQQGEQGEQGEQGEQGVCYV

Annotated regions:
Protein sequence:
MANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDERAIDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK

Annotated regions:
phrase: ANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWAD
type: DOMAIN
name: hnRNPR_RRM2
description: Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 2

phrase: VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRL
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEE
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYE
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCI
type: DOMAIN
name: hnRNPR_RRM1
description: Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 1

phrase: KVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAK
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWAD
type: DOMAIN
name: RRM_dom
description: RNA recognition motif domain

phrase: GLPQKVAERLDEIFQTGLVAYVDLDERAIDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTY
type: DOMAIN
name: hnRNP_Q_AcD
description: Heterogeneous nuclear ribonucleoprotein Q acidic domain
Protein sequence:
MKAVIFVVDGLGDRPDKNGNTPLKEAKTPVMDRMAKEGICGLMNSVDIGVRPGSDTAHLALLGYDPYTTYTGRGPFEACGVGVTVKPGDIAFRCNFSSVDENFIVTDRRAGRIENTSELEKELDGLKIDDVEIIFKESGGYRAALVLRGPGLSDKITDADPKKEGKKVKEIHPLDDSKEAKKTAEIVNKLLKIAYEKLDKHPVNEERRKQNLPVANMIVPRGVGQVPEIMQFTEKTGLKGACIAGTGLIKGIAKMVGLDVIDVEGCDGTPDSDFMAKACAIVETLENYDFILVNVKGADEAGHDGNYELKKQVIEKVDEMLDYITKNISKDEVYFVLSGDHSTPIEEMDHSADPLPVVLWGKSVRVDDVEKFDEFSTYKGGLNWIKGVHIMPILLDLMGLAKKYGA

Annotated regions:
phrase: MKAVIFVVDGLGDRPDKNGNTPLKEAKTPVMDRMAKEGICGLMNSVDIGVRPGSDTAHLALLGYDPYTTYTGRGPFEACGVGVTVKPGDIAFRCNFSSVDENFIVTDRRAGRIENTSELEKELDGLKIDDVEIIFKESGGYRAALVLRGPGLSDKITDADPKKEGKKVKEIHPLDDSKEAKKTAEIVNKLLKIAYEKLDKHPVNEERRKQNLPVANMIVPRGVGQVPEIMQFTEKTGLKGACIAGTGLIKGIAKMVGLDVIDVEGCDGTPDSDFMAKACAIVETLENYDFILVNVKGADEAGHDGNYELKKQVIEKVDEMLDYITKNISKDEVYFVLSGDHSTPIEEMDHSADPLPVVLWGKSVRVDDVEKFDEFSTYKGGLNWIKGVHIMPILL
type: DOMAIN
name: Metalloenzyme
description: Metalloenzyme
Protein sequence:
MSTVAEHVRAAPSSVDRPRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAEADIVVINTCAVRENADNKLYGNLGHLAGVKRRHEGMQIAVGGCLAQKDRATVLEKAPWVDVVFGTHNMGALPTLLERARHNGEAQLEILESLETFPSTLPTKRDEIASGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSYGVEFGDRQAFGKLLRAAGAIEGLERIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSERFLGILDRVRTRVPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQVPADVVKERYGRLTALQERISHEENQRVVGRTVEVLVSAHEGRKDGDTRRVTGRAQDGRLVHLDVPEGSAEPRPGDAVDVEVTRAAPFHLIADSVDGAPLRIRRTRAGDAWERAQADSCGVPTPATGASAGAAPRVSLGLPTLRVPTTASTSAPVGDGSAHPRHRA

Annotated regions:
phrase: YEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAEADIVVINTCAVRENADNKLYGNLGHLAGVKRRHEGMQIAVGGCLAQKDRATVLEKAPWVDVVF
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: VSISVGCNNTCTFCIVPALR
type: CONSERVED_SITE
name: Methylthiotransferase_CS
description: Methylthiotransferase, conserved site

phrase: RDEIASGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSYGVEFGDRQAFGKLLRAAGAIEGLERIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSERFLGILDRVRTRVPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQVPADVVKERYGRLTALQERISH
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: QRVVGRTVEVLVSAHEGRKDGDTRRVTGRAQDGRLVHLDVPEGSAEPRPGDAVDVEVTRAAPFHLIADSV
type: DOMAIN
name: TRAM_dom
description: TRAM domain

phrase: RTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAEADIVVINTCAVRENADNKLYGNLGHLAGVKRRHEGMQIAVGGCLAQKDRATVLEKAPWVDVVFGTHNMGALPTLLERAR
type: DOMAIN
name: Methylthiotransferase_N
description: Methylthiotransferase, N-terminal

phrase: ASGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSYGVEFGDRQAFGKLLRAAGAIEGLERIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSERFLGILDRVRTRVPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQVPADVVKERYGRLTA
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: VSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSYGVEFGDRQAFGKLLRAAGAIEGLERIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSERFLGILDRVRTRVPDAAITTDIIVGFPGETEEDFQETL
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MKFTGPLVPATLVQRYKRFLFDAILTDGTAITGSCPNTGSMRGLTTPGSRIWLSEHDSTTRKYRHMLEIVEADGTLVGINTGLPNRIAEEAISAGQVSNLDSYDTLRREQRYGRNSRIDILLSDAEKGLAYVEVKNVHFSRLSGLAEFPDSPTERGAKHLEELGDMVAAGHRAIMLYLVQRDDCSRFRICRELDPVYARAFERASTRGVEAYAVKCQVSPLQIVATGPMMVDEAVPAVL

Annotated regions:
phrase: LPNRIAEEAISAGQVSNLDSYDTLRREQRYGRNSRIDILLSDAEKGLAYVEVKNVHFSRLSGLAEFPDSPTERGAKHLEELGDMVAAGHRAIMLYLVQRDDCSRFRICRELDPVYARAFERASTRGVEAYAVKCQVS
type: DOMAIN
name: SfsA_C
description: Sugar fermentation stimulation protein, C-terminal

phrase: VQRYKRFLFDAILTDGTAITGSCPNTGSMRGLTTPGSRIWLSEHDSTTRKYRHMLEIVEADGTLVG
type: DOMAIN
name: SfsA_N
description: SfsA, N-terminal OB domain
Protein sequence:
MKLRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFVALNVAVGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVVGK

Annotated regions:
phrase: LRPLHDRVIVKRLEQETKTASGIV
type: CONSERVED_SITE
name: Chaprnonin_Cpn10_CS
description: Chaperonin GroES, conserved site