nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MKIVAEASVPYLRGIVDPVADITYLHSDCFSPDTIRHARVLIVRSITKCTPALLQGTDVRLITTATAGFDHIDREYCESHGILWRNSPGCNATAVAQYVMCCLCRLALREGFSLKEKVMGIVGVGHVGGELKRLASAYGMEFLLCDPPRSEAEQDNSFLPLSRLVEQCDIISFHVPLTHEDPHATYHLIGEAFLRSCADKRPILINACRGAVADTQALIRAVKSGWLQALVIDCWEGEPDIDLSLLDLADIATPHIAGFSADGKANGARMCLEAITEVFGLEFPLLHTLAPPPPTHPIIDLSLFPDHRIERALLHTFDPLVPDRSLRASPKTFEEQRKAYPHPREMKAFTVVGATTEEAKILRGMDFIS

Annotated regions:
phrase: MGIVGVGHVGGELKRLASAYGMEFLLC
type: CONSERVED_SITE
name: D-isomer_DH_CS1
description: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1

phrase: EGFSLKEKVMGIVGVGHVGGELKRLASAYGMEFLLCDPPRSEAEQDNSFLPLSRLVEQCDIISFHVPLTHEDPHATYHLIGEAFLRSCADKRPILINACRGAVADTQALIRAVKSGWLQALVIDCWEGEPDIDLSLLDLADIATPHI
type: DOMAIN
name: D-isomer_DH_NAD-bd
description: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain

phrase: TIRHARVLIVRSITKCTPALLQGTDVRLITTATAGFDHIDREYCESHGILWRNSPGCNATAVAQYVMCCLCRLALREGFSLKEKVMGIVGVGHVGGELKRLASAYGMEFLLCDPPRSEAEQDNSFLPLSRLVEQCDIISFHVPLTHEDPHATYHLIGEAFLRSCADKRPILINACRGAVADTQALIRAVKSGWLQALVIDCWEGEPDIDLSLLDLADIATPHIAGFSADGKANGARMCLEAITEV
type: DOMAIN
name: D-isomer_2_OHA_DH_cat_dom
description: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Protein sequence:
MGKFFASYLLILAPFFLQSCSAPSRTTLEGVRMTIPYRIVFGEALSPDAFQQAQKEIDRVFDHIDQTFNNWNPLSEISRINRTTKQTPIPLSPALFAFLCEIDHFHAFSDGRFDPTLGALKSLWLLHLKSHTIPSQELQHLYKHSSGWHLISLDKTQQTLRKLSPLVQLDLCGTVKGFAVDLLGTACAQFCQNYYVEWGGEIKTKGKHPSGRSWAVASSATPEILHLHDHAIATSGSQYQRWHVDNKTYTHILDPLTGTPLEDSSHPILAVSVINESCAFADAMATALTTFSSKQEALDWANKKHLCAYITDKNVS

Annotated regions:
Protein sequence:
MRLGLLMFLPLLLLATRYRAVTALSYDPTWESLDRRPLPAWFDQAKFGIFIHWGVFSVPSFGSEWFWWYWQKERRPKFVDFMDNNYPPGFKYEDFGVLFTAKYFNANQWADLLQASGAKYVVLTSKHHEGFTLWGSAHSWNWNAVDEGPKRDIVKELEVAVRNRTDLHFGLYYSLFEWFHPLFLEDQSSAFQKQRFPVAKTLPELYELVTKYQPEVLWSDGDGGAPDHYWNSTDFLAWLYNESPVRDTVVTNDRWGAGSICKHGGYYTCSDRYNPGHLLPHKWENCMTIDKFSWGYRREAEIGDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGIIPVIFEERLRQMGTWLKVNGEAIYETHTWRSQNDTVTPDVWYTSKPEKKLVYAIFLKWPISGKLFLGQPIGSLGETEVELLGHGRPLTWTSSKPSGIVVELPRLSVHQMPCKWGWTLALTNVT

Annotated regions:
phrase: QNDTVTPDVWYTSKPEKKLVYAIFLKWPISGKLFLGQPIGSLGETEVELLGHGRPLTWTSSKPSGIVVELPRLSVHQMPCKWGWTLAL
type: DOMAIN
name: Fucosidase_C
description: Alpha-L-fucosidase, C-terminal

phrase: PGHLLPHKWEN
type: CONSERVED_SITE
name: Glyco_hydro_29_CS
description: Glycoside hydrolase, family 29, conserved site
Protein sequence:
MDLRQREHIETVVQATTYLAPPAVLADRIAHDAIIQNSWRRCVHQYGLDPSRMQEARILPQPRLREHQERIDDFARIARHGLQSLYGQVAGLGYVVLLTDAQGVTVDYIGEARSDAALRHAGLYLGAEWSESGAGTCAVGTALATGQALTVHQADHFDATHIPLTCTAAPLFDTHGNLHAILDISALTSPQAKDSQGLALQMVRIYAAHIENANFLRAHRRDWILKLNVAPEFVDVNPEYLLALDEAGRIVGHNHRARLMLEGELGGAPGATVLGQRFETLFDARLEDLGHYVYSRPSEQRLVALTRSGGLLYLSVLPPALRWQAPPAETQVAMPDALAALTGGDAALQLQLQRAARLVDSPINLLIHGETGSGKEFLAKALHLASARRGGPFVAVNCAAIPETLIESELFGHLPNSFSGAGPRGKRGLIQEADGGTLFLDEIGDMPRELQSRLLRVLAEGEVLPVGAARPVPVRLRVISATHHSLEQLVADGRFREDLYYRLNGARFTLPPLRARTDLDWLVRKLLQEGSAEGSEITLSPAARERLHRHRWPGNLRELRNVLEYARAVCADGYIDVPDLPDSLAGPAPSAALPQPGPAQSPAAAPFDPHQLPPEGMLLMQYLRASGWNLSAVARQIGVSRMTLYRRMERYGIQSPNRRDGGPEPTDA

Annotated regions:
phrase: GGDAALQLQLQRAARLVDSPINLLIHGETGSGKEFLAKALHLASARRGGPFVAVNCAAIPETLIESELFGHLPNSFSGAGPRGKRGLIQEADGGTLFLDEIGDMPRELQSRLLRVLAEGEVLPVGAARPVPVRLRVISATHHSLEQLVADGRFREDLYYRLNG
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: GLIQEADGGTLFLDE
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_2
description: Sigma-54 interaction domain, ATP-binding site 2

phrase: EGMLLMQYLRASGWNLSAVARQIGVSRMTLYRRMER
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type

phrase: LTGGDAALQLQLQRAARLVDSPINLLIHGETGSGKEFLAKALHLASARRGGPFVAVNCAAIPETLIESELFGHLPNSFSGAGPRGKRGLIQEADGGTLFLDEIGDMPRELQSRLLRVLAEGEVLPVGAARPVPVRLRVISATHHSLEQLVADGRFREDLYYRLNGARFTLPPLRARTDLDWLVRKLLQEGSAEGSEITLSPAARERLHRHRWPGNLRELRNVLEYAR
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: RIARHGLQSLYGQVAGLGYVVLLTDAQGVTVDYIGEARSDAALRHAGLYLGAEWSESGAGTCAVGTALATGQALTVHQADHFDATHIPLTCTAAPLFDTHGNLHAILDISALTSPQAKDSQGLALQMVRIYAAHIEN
type: DOMAIN
name: GAF
description: GAF domain

phrase: MLLMQYLRASGWNLSAV
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type

phrase: ARQIGVSRMTLYRRMERYGI
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type

phrase: SPINLLIHGETGSGKEFLAKALHLASARRGGPFVAVNCAAIPETLIESELFGHLPNSFSGAGPRGKRGLIQEADGGTLFLDEIGDMPRELQSRLLRVLAEGEVLPVGAARPVPVRLRVISATHHSLEQLVADGRFREDLYYRLN
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: WPGNLRELR
type: CONSERVED_SITE
name: Sigma_54_int_dom_CS
description: Sigma-54 interaction domain, conserved site

phrase: LLIHGETGSGKEF
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_1
description: Sigma-54 interaction domain, ATP-binding site 1
Protein sequence:
MDLAIIDQTHDGVSRYHHDLVESVLNFAGEALKLPVNTEMSVTFVNNDEIQRYNRDYRGVDKPTDVISFAIEEGEDDFNIISDDAWTEDIAKNIGDIIVSVDIIGAQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQREILDNYGLKR

Annotated regions:
phrase: HGFLHLNGYD
type: CONSERVED_SITE
name: YbeY_CS
description: Endoribonuclease YbeY, conserved site
Protein sequence:
MAERITKLRAAKLPIGFRAAGISSGIKDSGAKDLGIVISDFPAVSAATFTTNRIKAAPVRLSKRHLSCGDIRAVIVNSGNANACNGRQGLNDAKLMAQFAASSLGLEPRQVFVCSTGIIGYPLPVAKVQAATPKIVEKLRISGWGDFSRSIMTSDKVNKVCAVKTLIGGKEIIITGTAKGSGMIAPNMATMLAFVVTDAAISEVDLRETTKRVVNETFNCISIDGDMSTNDTVLVLANGTAKNRRPRKGSKDLKHFSEALKNVMLDLSKQLVRDGEGASKFIRIEVEGASSDLDAKKVARAVAKSSLVKCSWNGSDPNWGRVIDAVGYSGARVDENKVDIYFGPLAAAVNGIVAPTPIGKLKAQVAKKEFTLRIDLNIGKGYHRVFTSDLSEEYVAYNRLEYALKIQGR

Annotated regions:
Protein sequence:
MVSSKQTQLKKGKQPSWIEMYLPKEVRPYAHLARLDKPIGSWLLAWPAFWSVALAADLESLPKMLAIFGWWAVWIRGAGCTINDYFDRNFDKKVERTKSRPLASGAVSPAQGLWWLAFQLFIGLGVLYQFNVLTLALAIVHVPFVFAYPLMKRITYWPQAFLGVMISWGALLGSSALKGSVVPSIAYPLYISSFFWTLVYDTIYAHQDKVDDAKAGIKSTALRFGDATKMWISWFGVGCIAALVIGGLILNIGLPYYVFVAIATGQLVWQIFTVDLLSPLDCGKKFVSNQWFGAIIFTGILLGRLFP

Annotated regions:
phrase: NDYFDRNFDKKVERTKSRPLAS
type: CONSERVED_SITE
name: UbiA_prenylTrfase_CS
description: UbiA prenyltransferase conserved site
Protein sequence:
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRDRSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGVLLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEAQASGE

Annotated regions:
phrase: LSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGVLLDTMYDLPSMDSV
type: DOMAIN
name: Clp_ATPase_C
description: Clp ATPase, C-terminal

phrase: GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNA
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: LSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGVLLDTMYDLPSMDSVEKVVVDESVIAGQSAPML
type: DOMAIN
name: Clp_ATPase_C
description: Clp ATPase, C-terminal

phrase: KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLP
type: DOMAIN
name: ATPase_AAA_core
description: ATPase, AAA-type, core

phrase: LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIRE
type: DOMAIN
name: Znf_CppX_C4
description: Zinc finger, ClpX C4-type

phrase: TDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV
type: DOMAIN
name: Znf_CppX_C4
description: Zinc finger, ClpX C4-type

phrase: YCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIR
type: DOMAIN
name: Znf_CppX_C4
description: Zinc finger, ClpX C4-type
Protein sequence:
MRIIFATHNEDKLREIREILREFPGEIISKKEIGEWEDAVEDGSSFLENAEIKAYDLYVRLKKKELLQDGDIIMADDSGLSIEALSFGPGIYSARFLGENTPYPEKNKRILEMMKEASSKSRYAYFTCAIVAVLSDGRSLKTEARCEGEIAKEIRGEAGFGYDPIFFIPECGKTAAELSEEEKNKVSHRGKALRKMERILKEEIAKSKKTAEEKKSKSKNSAERKKEEHSASDFKGEKKILVVSDNHRKLDNIYQLLEENPDISYFIHLGDSEGSEDAIRTHLPKGCESYFVQGNNDFFAYLPKEIEMRLGKERLFLTHGHLYGVGFDLQGLADEARARNCSMALFGHTHRPFSRMVNGVLCINPGSINFPRQENRKPSYAMFYLDKKGNLRTEAKYI

Annotated regions:
phrase: KILVVSDNHRKLDNIYQLLEENPDISYFIHLGDSEGSEDAIRTHLPKGCESYFVQGNNDFFAYLPKEIEMRLGKERLFLTHGHLYGVGFDLQGLADEARARNCSMALFGHTHRPFSRMVNGVLCINPGSINFPRQENRKPSYAMFYLDKK
type: DOMAIN
name: MPP_YfcE
description: YfcE-like, metallophosphatase domain

phrase: KILVVSDNHRKLDNIYQLLEENPDISYFIHLGDSEGSEDAIRTHLPKGCESYFVQGNNDFFAYLPKEIEMRLGKERLFLTHGHLYGVGFDLQGLADEARARNCSMALFGHTHRPFSRMVNGVLCINPGSINFPRQENRKPSYAMFYLD
type: DOMAIN
name: Calcineurin-like_PHP_lpxH
description: Calcineurin-like phosphoesterase domain, lpxH-type
Protein sequence:
MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIECLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEKITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGATGAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPESHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKYEELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS

Annotated regions:
Protein sequence:
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR

Annotated regions:
phrase: RVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLP
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain

phrase: PITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADA
type: DOMAIN
name: Citrate_lyase_ligase_C
description: Citrate lyase ligase, C-terminal

phrase: LYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVR
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain
Protein sequence:
MANSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH

Annotated regions:
phrase: DECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARA
type: DOMAIN
name: ADF-H
description: Actin-depolymerising factor homology domain

phrase: CKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIR
type: DOMAIN
name: ADF-H
description: Actin-depolymerising factor homology domain

phrase: GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARA
type: DOMAIN
name: ADF-H
description: Actin-depolymerising factor homology domain
Protein sequence:
MIQNIVIIGTQWGDEGKGKIIDFLTPQVQYVVRYQGGHNAGHTIVVNHKKVTLHLIPSGILHDNIINIIAGGVVLSPVILVKEIQKLKKINVLVDDRIFISESCSLILPYHIAIDLAREKISTTVITNNNVIIGTTGCGIGPAYEDKVARRALRVYDLYNLKNFENKLKNIADFYNFQLVQYYHAEPIDYHVVMDEIITVSDILIKKVIDVPELLLNARKRGDKIIFEGAQGSLLDIDHGTYPYVTSSHTTSGGAIVGIGVGPKYIDYVLGIMKAYSTRVGNGPFPTELSGDIAEWLCTRGQEFGSTTGRRRRTGWFDAVSVRHAIKISSINSACLTKIDILDGLKYVKICVAYQSFNGEIIYNFPYSLENLKNITPVYEVLPGWSGRTTGIKKFNQLPLEAKQYIKRIEEVIGIPIDIISTGPDRLMNIIVRNPLNF

Annotated regions:
phrase: QWGDEGK
type: BINDING_SITE
name: Adenylosuccin_syn_GTP-bd
description: Adenylosuccinate synthase, GTP-binding site

phrase: GIGPAYEDKVA
type: ACTIVE_SITE
name: Adenylosuccin_syn_Lys_AS
description: Adenylosuccinate synthase, active site
Protein sequence:
MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTDTHSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGDCP

Annotated regions:
phrase: LSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYM
type: DOMAIN
name: HTH_AraC
description: DNA binding HTH domain, AraC-type

phrase: KITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSY
type: DOMAIN
name: HTH_AraC
description: DNA binding HTH domain, AraC-type

phrase: LKEIAHQTGYQDEFY
type: DOMAIN
name: Tscrpt_reg_AraC-type_HTH
description: Transcription regulator HTH, AraC- type, HTH domain

phrase: FSRIFKKYTGCSPTSY
type: DOMAIN
name: Tscrpt_reg_AraC-type_HTH
description: Transcription regulator HTH, AraC- type, HTH domain

phrase: KIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGD
type: DOMAIN
name: ABC_transptr_periplasmic_BD
description: ABC transporter periplasmic binding domain

phrase: RITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCS
type: CONSERVED_SITE
name: HTH_AraC-typ_CS
description: HTH domain AraC-type, conserved site

phrase: PFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYL
type: DOMAIN
name: ABC_transptr_periplasmic_BD
description: ABC transporter periplasmic binding domain

phrase: EKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMK
type: DOMAIN
name: HTH_AraC
description: DNA binding HTH domain, AraC-type
Protein sequence:
MTFGIDDLPVRDELRGKSPYGAPQLDVPVRLNTNENPYPLPEALVERIAERVREAARDLNRYPDRDAVELRTQLARYLTDTSGHPLDVSNVWAANGSNEVIQQLLQTFGGPGRTAIGFEPSYSMHGLIARGTGTGWISGPRHEDFTIDVPAATRAIDEHRPDVVFITTPNNPTGTAVPAETVLALYEAAQAAKPSMVVVDEAYIEFSHGASLLPLLDGRPNLVVSRTMSKAFGAAGLRLGYLAAHPAVVDAVQLVRLPYHLSAVTQATALAALEHTDTLLKYVEQLKTERDRLVAELRAIGYAVTESDANFVQFGRFADSHATWRKILDRGVLVRDNGVPGWLRVTAGTPEENDAFLDAVREVKKEQHT

Annotated regions:
phrase: VRLNTNENPYPLPEALVERIAERVREAARDLNRYPDRDAVELRTQLARYLTDTSGHPLDVSNVWAANGSNEVIQQLLQTFGGPGRTAIGFEPSYSMHGLIARGTGTGWISGPRHEDFTIDVPAATRAIDEHRPDVVFITTPNNPTGTAVPAETVLALYEAAQAAKPSMVVVDEAYIEFSHGASLLPLLDGRPNLVVSRTMSKAFGAAGLRLGYLAAHPAVVDAVQLVRLPYHLSAVTQATALAALEHTDTLLKYVEQLKTERDRLVAELRAIGYAVTESDANFVQFGRFADSHATWRKILDRGVLVRDNGVPGWLRVTAGTPEENDAFLD
type: DOMAIN
name: Aminotransferase_I/II_large
description: Aminotransferase, class I/classII, large domain

phrase: TMSKAFGAA
type: BINDING_SITE
name: Aminotrans_II_pyridoxalP_BS
description: Aminotransferase, class-II, pyridoxal-phosphate binding site
Protein sequence:
MVEWTDAERSAIKTLWGKINVAEIGPQALTRLMIVYPWTQRHFSSFGNISTNAAILGNEKVAEHGRTVMGGLDRAVQNLDDIKNAYTLLSQKHSEIIHVDPDNFRLLAECFSICVGIKLGPKVFNANVQEAWQKFLAVVVNALGRQYH

Annotated regions:
phrase: TDAERSAIKTLWGKINVAEIGPQALTRLMIVYPWTQRHFSSFGNISTNAAILGNEKVAEHGRTVMGGLDRAVQNLDDIKNAYTLLSQKHSEIIHVDPDNFRLLAECFSICVGIKLGPKVFNANVQEAWQKFLAVVVNALGRQY
type: DOMAIN
name: Globin
description: Globin

phrase: ALTRLMIVYPWTQRHFSSFGNISTNAAILGNEKVAEHGRTVMGGLDRAVQNLDDIKNAYTLLSQKHSEIIHVDPDNFRLLAECFSICVGIKLGPKVFNANVQEAWQKFLAVVVNA
type: DOMAIN
name: Globin
description: Globin
Protein sequence:
MRVKICGITQPQQSVAIASLGATALGFICVPSSPRYVTAGQIRDAVTPLPENIDKIGVFANSSIAEIYQTVIDSGLTGVQLHGDETPEFCDQVRQSLPQVEVLKALRVRSLEHLEQAVIYTKYINTLLLDAYHPQQLGGTGQTLDWQMLQKFRPSCPWLLAGGLTPENILEALSQLNPDGIDLSSGVELKPGDKDLDKVALLFEKLESREWKKGSGE

Annotated regions:
phrase: VKICGITQPQQSVAIASLGATALGFICVPSSPRYVTAGQIRDAVTPLPENIDKIGVFANSSIAEIYQTVIDSGLTGVQLHGDETPEFCDQVRQSLPQVEVLKALRVRSLEHLEQAVIYTKYINTLLLDAYHPQQLGGTGQTLDWQMLQKFRPSCPWLLAGGLTPENILEALSQLNPDGIDLSSGVELKPGDKDLDKVALLF
type: DOMAIN
name: PRAI_dom
description: N-(5'phosphoribosyl) anthranilate isomerase (PRAI) domain

phrase: MRVKICGITQPQQSVAIASLGATALGFICVPSSPRYVTAGQIRDAVTPLPENIDKIGVFANSSIAEIYQTVIDSGLTGVQLHGDETPEFCDQVRQSLPQVEVLKALRVRSLEHLEQAVIYTKYINTLLLDAYHPQQLGGTGQTLDWQMLQKFRPSCPWLLAGGLTPENILEALSQLNPDGIDLSSGVELKPGDKDLDKVALLFEKLES
type: DOMAIN
name: PRAI_dom
description: N-(5'phosphoribosyl) anthranilate isomerase (PRAI) domain

phrase: VKICGITQPQQSVAIASLGATALGFICVPSSPRYVTAGQIRDAVTPLPENIDKIGVFANSSIAEIYQTVIDSGLTGVQLHGDETPEFCDQVRQSLPQVEVLKALRVRSLEHLEQAVIYTKYINTLLLDAYHPQQLGGTGQTLDWQMLQKFRPSCPWLLAGGLTPENILEALSQLNPDGIDLSSGVELKPGDKDLDKVALLFEK
type: DOMAIN
name: PRAI_dom
description: N-(5'phosphoribosyl) anthranilate isomerase (PRAI) domain
Protein sequence:
MSHIPSELKYATSHEWIRVEANGEAVVGITEHAQELLGDMVFVDLPEVGKQVGAGDDCAVAESVKAASDIYSPVSGEILAVNEELEGSPELVNSDPYGAGWLFRIKLDDAGELANLLDAEGYQNVVDEE

Annotated regions:
phrase: GKQVGAGDDCAVAESVKAASDIYSPVSGE
type: BINDING_SITE
name: 2-oxoA_DH_lipoyl-BS
description: 2-oxo acid dehydrogenase, lipoyl-binding site

phrase: EAVVGITEHAQELLGDMVFVDLPEVGKQVGAGDDCAVAESVKAASDIYSPVSGEILAVNEELEGSPELVNSDPYGAGWLFRI
type: DOMAIN
name: Biotin_lipoyl
description: Biotin/lipoyl attachment
Protein sequence:
MLIVLATKNQHKIKEIKEILGADIHYQTLSDYLNIDIKEAGRTLMENSLAKATFTFKVSGKPSLADDSGLFVEALDGEPGIHSSRYGIDDEHRITKLLKNLGTKKNRKALFKAVFVYYYALNKYEVFEGECAGEIAYEPCGTEGFGYDPIFMPGKYKKTFAQLGQKVKNRISHRTKALTKFKKYLQRDF

Annotated regions:
Protein sequence:
MTGFAAIIVAGGKGARTGLERPKQWENLLGKRVIDWSVDTFLSHPDLIELVIVVDDLTVATSFPSKTKVVGGGDTRTASVRAGIAALATEDGTPVLIHDAARPGLSLSLIDTLVEALSGHDAAAPALPVSDALKQEASGHFSTVPRDGLYRVQTPQAFXQATIRAALEAPGSFVDXLEAVEAAGARVTLVPGSVRLHKXTYAEDFDLVSRLLTPALSAPRVGKGFDVHAFEPGDHVTLCGVKIPHKAKLKGHSDADAAWHALTDAILGAAALGDIGDHFPPSDPRWKDADSSLFLKHAQTLADKAGYTLTSCDITVICEAPKVKPHREAMRIRTAELLGLPLDAVSVKATTTEKLGFTGRQEGIAAEAVAVLAPKA

Annotated regions:
phrase: PALSAPRVGKGFDVHAFEPGDHVTLCGVKIPHKAKLKGHSDADAAWHALTDAILGAAALGDIGDHFPPSDPRWKDADSSLFLKHAQTLADKAGYTLTSCDITVICEAPKVKPHREAMRIRTAELLGLPLDAVSVKATTTEKLGFTGRQEGIAAEAVAVL
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: RVGKGFDVHAFEPGDHVTLCGVKIPHKAKLKGHSDADAAWHALTDAILGAAALGDIGDHFPPSDPRWKDADSSLFLKHAQTLADKAGYTLTSCDITVICEAPKVKPHREAMRIRTAELLGLPLDAVSVKATTTEKLGFTGRQEGIAAEAVAV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: RVGKGFDVHAFEPGDHVTLCGVKIPHKAKLKGHSDADAAWHALTDAILGAAALGDIGDHFPPSDPRWKDADSSLFLKHAQTLADKAGYTLTSCDITVICEAPKVKPHREAMRIRTAELLGLPLDAVSVKATTTEKLGFTGRQEGIAAEAVAV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: PRVGKGFDVHAFEPGDHVTLCGVKIPHKAKLKGHSDADAAWHALTDAILGAAALGDIGDHFPPSDPRWKDADSSLFLKHAQTLADKAGYTLTSCDITVICEAPKVKPHREAMRIRTAELLGLPLDAVSVKATTTEKLGFTGRQEGIAAEAVAVLA
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: SDADAAWHALTDAIL
type: CONSERVED_SITE
name: MECDP_synthase_CS
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site

phrase: RVGKGFDVHAFEPGDHVTLCGVKIPHKAKLKGHSDADAAWHALTDAILGAAALGDIGDHFPPSDPRWKDADSSLFLKHAQTLADKAGYTLTSCDITVICEAPKVKPHREAMRIRTAELLGLPLDAVSVKATTTEKLGFTGRQEGIAAEAVAV
type: DOMAIN
name: MECDP_synthase
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

phrase: VLIHDAA
type: CONSERVED_SITE
name: ISPD_synthase_CS
description: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site
Protein sequence:
MTLQKKIIELLGVKPAIIPEIEIKNCVDFLKKYLVNHVHIKSLIVGVSGGQDSTLTAKLCQMTAETLRKEKNDITYQFIALRLPYGIQYDEKDCQDAIRFIQPDQIFNVNIKKAVLSSEKSLKKSGVIISDYVRGNEKARERMKVQYSIAAMKQGLVVGTGHAAENITGFFTKYGDSGTDINPIAKLNKRQIRLLLKNLNCPKHLYLKKPMADLEDEHPQQDDESVLGVTYDAIDSYLEQKKIDIRSQKIIEALYLNTLHKRNLPITQ

Annotated regions:
phrase: IKNCVDFLKKYLVNHVHIKSLIVGVSGGQDSTLTAKLCQMTAETLRKEKNDITYQFIALRLPYGIQYDEKDCQDAIRFIQPDQIFNVNIKKAVLSSEKSLKKSGVIISDYVRGNEKARERMKVQYSIAAMKQGLVVGTGHAAENITGFFTKYGDSGTDINPIAKLNKRQIRLLLKNLNCPKHLYLKKPMADLEDEHPQQDDESVLGVTYDAIDSYLEQKKIDIRSQKIIEALYLNTLHKRNL
type: DOMAIN
name: NAD/GMP_synthase
description: NAD/GMP synthase
Protein sequence:
MLSEKTINTIKSTVPVLEVHGTAITTQFYQMLFTNHPELLNIFNHANQKQGRQQAALANTVYAAAQYIDRLEEILPVVKQIAHKHRSLGIQAEHYPIVGKYLLAAIKEVLGDAATDEILEAWAEAYGVIAGAFIGVEDQMYKQAENQTGGWADFRAFRVERKIQESNVITSFYLVPEDGQAIASFEPGQYISVKLDIPGENNTHIRQYSLSEAPGKSYYRISVKREDAILDRPAGKVSQYLHEQVKEGGTLLLSAPAGEFVLNREDKRPVVLISGGVGLTPMISMLNTLAETEPDRQVTFIHAAQNGLSHALRKEVELLTRENPLISASWCYEAPTAEDQEGDAYHKAGFIDLPWLQSKIPSKDAAFYFCGPLPFMKAVNSALKEWEVPASDIHFEFFGPAAALEG

Annotated regions:
phrase: QFYQMLFTNHPELLNIFNHANQKQGRQQAALANTVYAAAQYIDRLEEILPVVKQIAHKHRSLGIQAEHYPIVGKYLLAAIKEVLGDAATDEILEAWAEAYGVIAG
type: DOMAIN
name: Globin
description: Globin

phrase: LISGGVGLTPMISMLNTLAETEPDRQVTFIHAAQNGLSHALRKEVELLTRENPLISASWCYEAPTAEDQEGDAYHKAGFIDLPWLQSKIPSKDAAFYFCGPLPFMKAV
type: DOMAIN
name: OxRdtase_FAD/NAD-bd
description: Oxidoreductase FAD/NAD(P)-binding

phrase: ADFRAFRVERKIQESNVITSFYLVPEDGQAIASFEPGQYISVKLDIPGENNTHIRQYSLSEAPGKSYYRISVKREDAILDRPAGKVSQYLHEQVKEGGTLLLSAPAGEFVL
type: DOMAIN
name: FAD-bd_FR_type
description: FAD-binding domain, ferredoxin reductase-type

phrase: MLSEKTINTIKSTVPVLEVHGTAITTQFYQMLFTNHPELLNIFNHANQKQGRQQAALANTVYAAAQYIDRLEEILPVVKQIAHKHRSLGIQAEHYPIVGKYLLAAIKEVLGDAATDEILEAWAEAYGVI
type: DOMAIN
name: Globin
description: Globin

phrase: RVERKIQESNVITSFYLVPEDGQAIASFEPGQYISVKLDIPGENNTHIRQYSLSEAPGKSYYRISVKREDAILDRPAGKVSQYLHEQVKEGGTLLLSAPAGE
type: DOMAIN
name: Cbr1-like_FAD-bd_dom
description: Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain
Protein sequence:
MLSLSKNWNALIKTDKVSYESFPETNNKSKIIVEPLERGFGLTLGNAMRRVLLSSLQGAAVTSIKIPGIEHEFSSIPGVKEDISEIILNVKGIEIKMHVAEKRVIRLKATGPGAITAGMIEAGHDVEILNPDHVICNLAKNKQFEMELTCKVGKGYTLSTNNNEDNNLPIGEIAIDALFNPVKSVTYKVENTRIGQVTDYDKLIMFVETNGDILPEMAVGLAARILQEQLQLFISFEEQEEDKQVKTDALPFSPYLLKRVDELELSVRSANCLKNDNIIYIGDLVKRTEADMLRTPNFGRKSLNEIKEILAKFSLRFGMDVPDWPPENIHELSKRYEDSYN

Annotated regions:
phrase: EPLERGFGLTLGNAMRRVLLSSLQGAAVTSIKIPGIEHEFSSIPGVKEDISEIILNVKGIEIKMHVAEKRVIRLKATGPGAITAGMIEAGHDVEILNPDHVICNLAKNKQFEMELTCKVGKGYTLSTNNNEDNNLPIGEIAIDALFNPVKSVTYKVENTRIGQVTDYDKLIMFVETNGDILPEMAVGLAARILQEQ
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: KSKIIVEPLERGFGLTLGNAMRRVLLSSLQGAAVTSIKIPGIEHEFSSIPGVKEDISEIILNVKGIEIKMHVAEKRVIRLKATGPGAITAGMIEAGHDVEILNPDHVICNLAKNKQFEMELTCKVGKGYTLSTNNNEDNNLPIGEIAIDALFNPVKSVTYKVENTRIGQVTDYDKLIMFVETNGDILPEMAVGLAARILQEQLQLFIS
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: PYLLKRVDELELSVRSANCLKNDNIIYIGDLVKRTEADMLRTPNFGRKSLNEIKEIL
type: DOMAIN
name: RNAP_asu_C
description: RNA polymerase, alpha subunit, C-terminal

phrase: IKIPGIEHEFSSIPGVKEDISEIILNVKGIEIKMHVAEKRVIRLKATGPGAITAGMIEAGHDVEILNPDHVICNLAKNKQFEMELTCKVGKGYTLSTNNNEDNNLPIGEIAIDALF
type: DOMAIN
name: DNA-dir_RNA_pol_insert
description: DNA-directed RNA polymerase, insert domain
Protein sequence:
MSFDGLIVENENTKSGYNDGNDLTDLFKQNGTDMSVINSLLGDTNNPGMNESPKILDSSFENSNPQDGPNYEDFDFMGSIHKEFGNNINEMDDMEDVSDDNLPEEEQAVNYTGDKDDEDFGKLLAKEMGEEAAGQVLSGVGFSIPSGLVPPSEPSKTVSSTTEELQNEAQIRESIVKTFFPTFERGVLLNFSELFKPKPVKLAPPKKKTPKVCVPGRLTLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEKNIIYDESDVNKTNQSSFFIDKSLVDIDFAFDENIFDGDTGTSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSKVRNTLSQLAIEHAAFAEKLTFPYYKTRLSKRAVRSYHRPTMSFKPNAAIVFSPLIVRKRSKDKHKSERELIPTTKEITMGDTTHAILVEFSEEHPAVLSNAGMASRIVNYYRKKNEQDESRPKLEVGESHVLDVQDRSPFWNFGSVEPGEITPTLYNKMIRAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSGQTFPVTDVPGPHSRKVTTASKNRLKMLVFRLIRRSPNGGLFIRQLSKHFSDQNEMQIRQRLKEFMEYKKKGDGPGYWKLKSNEVVPDEAGTRSMVSPETVCLLESMQVGVRQLEDAGYGKTMDEINDDEDEEQPAEQLLAPWITTRNFINATQGKAMLTLFGEGDPTGIGEGYSFIRTSMKGGFKPAGETADDKPEPQTKNAHAYNVAKQQRAYEEEINRIWNAQKRGLSINNLEELAKKYGINSIHDDYVESNEETTREETPSSDKVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDEQSTALDAVVPTGDEAIDRRNRRRLEQELAKSQKNWERRRARHAAKEGINLNGEGRKPTTRKCSNCGQVGHMKTNKICPLFGRPEGGLATMLDKN

Annotated regions:
phrase: FNISNDPAYEMLKQNHQSKVRNTLSQLAIEHAAFAEKLTFPYYKTRLSKRAVRSYHRPTMSFKPNAAIVFSPLIVRKRSKDKHKSERELIPTTKEITMGDTTHAILVEFSEEHPAVLSNAGMASRIVNYYRKKNEQDESRPKLEVGESHVLDVQDRSPFWNFGSVEPGEITPTLYNKMIRAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSGQTFPVTDVPGPHSRKVTTASKNRLKMLVFRLIRRSPNGGLFIRQLSKHFSDQNEMQIRQRLKEFMEYKKKGDGPGYWKLKSNEVVPDEAGTRSMVSPETVCLLESMQVGVRQLEDAGYGKTMDEINDDEDEEQPAEQLLAPWITTRNFINATQGKAMLTLFGEGDPTGIGEGYSFIRTSMKGGFKPAGETADDKPEPQTKNAHAYNVAKQQRAYEEEINRIWNAQKR
type: DOMAIN
name: TAF1_HAT_dom
description: Transcription initiation factor TFIID subunit 1, histone acetyltransferase domain

phrase: RKCSNCGQVGHMKTNKICP
type: DOMAIN
name: Znf-CCHC_6
description: Zinc knuckle