nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MPAIVLIGAQWGDEGKGKATDLLGGRVQWVVRYQGGNNAGHTVVLPTGENFALHLIPSGVLTPGVTNVIGNGVVIDPGVLLNELRGLQDRGVDTAKLLISADAHLLMPYHIAIDKVTERYMGSKKIGTTGRGIGPCYQDKIARIGIRVADVLDPEQLTHKVEAACEFKNQVLVKIYNRKALDPAQVVDALLEQAEGFKHRIADTRLLLNAALEAGETVLLEGSQGTLLDVDHGTYPYVTSSNPTAGGAAVGSGIGPTRIGTVLGILKAYTTRVGSGPFPTELFDEHGEYLSKTGREFGVTTGRRRRCGWFDAVIARYAARVNGITDYFLTKLDVLSSLESVPVCVGYEIDGRRTRDMPMTQRDLCRAKPVYEELPGWWEDISGAREFDDLPAKARDYVLRLEQLAGAPVSCIGVGPGREQTIVRRDVLQDRP

Annotated regions:
phrase: GIGPCYQDKIA
type: ACTIVE_SITE
name: Adenylosuccin_syn_Lys_AS
description: Adenylosuccinate synthase, active site

phrase: QWGDEGK
type: BINDING_SITE
name: Adenylosuccin_syn_GTP-bd
description: Adenylosuccinate synthase, GTP-binding site
Protein sequence:
MFFGKLGGFAFFLQRAVRCDGFIDNFFDRIPKFFQFMKSKFPSHQTSSSQADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRVVEKYEADKVVFVCKQAPEFWSRFTKQLFFMSRNDVF

Annotated regions:
phrase: SHQTSSSQADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRVVEKYEADKVVFVCKQAPEFWSRFTKQLFFM
type: DOMAIN
name: Pept_C14_p10
description: Peptidase C14, caspase non-catalytic subunit p10

phrase: MFFGKLGGFAFFLQRAVRCDGFIDNFFDRIPKFFQFMKSKFPSHQTSSSQADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRVVEKYEADKVVFVCKQAPEFWSRFTKQLFFM
type: DOMAIN
name: Pept_C14A
description: Peptidase C14A, caspase catalytic domain

phrase: PKFFQFMKSKFPSHQTSSSQADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRVVEKYEADKVVFVCKQAPEFWSRFTKQL
type: DOMAIN
name: Pept_C14_caspase
description: Peptidase C14, caspase domain
Protein sequence:
MVLGVSGGIASYKAVEVLRQLTETGHEVRVVPTAAALRFVGEVTWAALSGQPVSTDLFSDAEDVAXVRVGRAADLVLVVPATADLMARAAAGRADDLLTGTLLTATCPVVFAPAMHTEMWQHAATRANVALLRERGAVVLEPAVGRLTGADSGPGRLPDPVEIAAVARAVLARGAALRPDLAGRHLLVTAGGTREYLDPVRFLGNASSGRQGYALARAAVARGAAVTMVAANVALPDVAGATTLRVGSAAELRAAVHGHAAAAEVVIMAAAVADFRPATEHQYKIKKEAGAPESIALARNPDVLAELVGDRRPGQVLVGFAAETGAPDAGVLDLARAKLARKPVDLLVVNQVGAGLGFEVEQNSAVLLDQAGGAVEIPLMSKDLLAHRILDRVTALLG

Annotated regions:
phrase: VLGVSGGIASYKAVEVLRQLTETGHEVRVVPTAAALRFVGEVTWAALSGQPVSTDLFSDAEDVAXVRVGRAADLVLVVPATADLMARAAAGRADDLLTGTLLTATCPVVFAPAMHTEMWQHAATRANVALLRERGAVVLEPAVGRLTGADSGP
type: DOMAIN
name: Flavoprotein
description: Flavoprotein

phrase: LAGRHLLVTAGGTREYLDPVRFLGNASSGRQGYALARAAVARGAAVTMVAANVALPDVAGATTLRVGSAAELRAAVHGHAAAAEVVIMAAAVADFRPATEHQYKIKKEAGAPESIALARNPDVLAELVGDRRPGQVLVGFAAETGAPDAGVLDLARAKLARKPVDLLVVNQVGAGLGFEVEQNSAV
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal
Protein sequence:
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN

Annotated regions:
phrase: QARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSL
type: DOMAIN
name: NusB_RsmB_TIM44
description: NusB/RsmB/TIM44
Protein sequence:
MADDRFTLPLRPLIEKRDRPDPLPLEIAQINAQWGSFRDVSEESLRAKIEEEKSKEYTIEEEEGEGAGAELDTTERLDQLYKRRAEIIQFAMQAHMEAMFALDFVSMLLSKHTPRQAETSMSAYLKQVAPLGSLHSEIINPPPKSEAVVRDTKTVSRGWRLQSFNAAADKLLKSASRLENEVASETRYWHEVLAVKDKGWKLCRLPRQGQTLGVQYGFLEATPIFRDRGLAALRRSEDGTLILDKGLVPTKAKTVRVRVKDCGIITGCSKPYRSAAQDPDSIEGRILQARDTLYEEELFHELFREARIMGSQGVTTRQNLVQFPVSEEQEILLDLVDPDQEVYVDDEATKSEEHNVLADALAHLIRILLCYAHRQNLRRRTQPPPALSPKRRHIPEYQLLRPIMAYLQHSFHVRWLETFMKDVYGVLQSAGLSCSFTATPYSSVNLSNIDRSVPKVEGLIRQFLLPLESTFSADLLTPQSSFKVKSRTNLSVPPFGTQFEILLNLPHYPDVHPPHRIGLHDQAANIITHFIMLDIVAAIELQTSPALSISKTEAKSVSWEATYPHHGELLSVSIDGKQKKMKVILSRDELTIQTYDVLGLERYSRAAPETTPGLQTHTWKAGPTTAPSLMEYVAAVSQR

Annotated regions:
Protein sequence:
MANIVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESLQPPTPPIPKTPKLPGI

Annotated regions:
phrase: KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYS
type: DOMAIN
name: Zeta_toxin_domain
description: Zeta toxin domain
Protein sequence:
MKARGMQRNYQHLWRWGTMFLWMIIMCKATENLWVTVYYGVPVWRDAETILFCASDAKAYDKEVHNVWATHACVPTDPNPQEIILENVTEKFDMWKNNMVEQMQTDIISLWDQSLKPCVKLTPLCVTLNCTAPNNSSSNSTSYNNSSAINSSANNSDDNRVFEEMKNCSFNMTTELRDKRKTVYSLFYKLDIVSTGSNSSNGSGEYRLINCNTSTTTQACPKVTFEPIPIHYCAPAGFAILKCKDTNFTGKGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKEVMIRSENITDNSKIIIVQLTEPVNITCIRPGNNTRTSIRIGPGQAFYATGEVIGDTRKAHCIVNRTAWSSTLQKISTQLRKYFNKTIIFKNSSGGDLEVTTHSFNCGGEFFYCYTTALFNSTWDKNGTVTNSTTANGTITLPCRIKQIINMWQRVGQAMYAPPIRGSIRCESNITGLLLARDGGGGANSSNETFRPIGGDMRDNWRSELYKYKVVEIEPIGVAPTKAKRRVVEREKRAIGLGAAFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNKTHDEIWNNMTWMQWDKEVINYTTIIYDLIEESQNQQEKNEQDLLALDKWASLWSWFDITNWLWYIRIFIIIVGGLIGLRIVFAVLSIINRVRQGYPPLSLQTLTPHPEGPDRPGRIKEEGGEQDRDRSIRLVSGFLALFWD

Annotated regions:
phrase: VQARQLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNKTHDEIWNNMTWMQWDKEVINYTTIIYDLIEESQNQQEKNEQDLLALD
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: MGAASMALTVQARQLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNKTHDEIWNNMTWMQWDKEVINYTTIIYDLIEESQNQQEKNEQDLLALDKWASLWSWFDITNWLWYIRIFIIIVGGLIGLRIVFAVLSIINRVRQGYPPLSLQT
type: DOMAIN
name: GP41-like
description: Retroviral envelope protein GP41-like

phrase: LWVTVYYGVPVWRDAETILFCASDAKAYDKEVHNVWATHACVPTDPNPQEIILENVTEKFDMWKNNMVEQMQTDIISLWDQSLKPCVKLTPLCVTLNCTAPNNSSSNSTSYNNSSAINSSANNSDDNRVFEEMKNCSFNMTTELRDKRKTVYSLFYKLDIVSTGSNSSNGSGEYRLINCNTSTTTQACPKVTFEPIPIHYCAPAGFAILKCKDTNFTGKGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKEVMIRSENITDNSKIIIVQLTEPVNITCIRPGNNTRTSIRIGPGQAFYATGEVIGDTRKAHCIVNRTAWSSTLQKISTQLRKYFNKTIIFKNSSGGDLEVTTHSFNCGGEFFYCYTTALFNSTWDKNGTVTNSTTANGTITLPCRIKQIINMWQRVGQAMYAPPIRGSIRCESNITGLLLARDGGGGANSSNETFRPIGGDMRDNWRSELYKYKVVEIEPIGVAPTKAKRRVVEREK
type: DOMAIN
name: HIV1_Gp120
description: Human immunodeficiency virus 1, envelope glycoprotein Gp120
Protein sequence:
MKCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELESALEEDMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKARKAEAMRRQQKLKQAKLAEQYREQSWMAVADLEKELREMEAQYEKQFGDGSGEDEAEDQELRDGQDGKDSDEAEDAELYDGLYCPACDKSFKTEKAMRNHEKSKKHREMVALLKQQLEEEEANFSGPQTDENSLNANSEEEMEDAPKQKLSRKQKKKKQKPAQNYDDNFNENGIGEGVKIDPEDTNLNQNSAKESEDSLQENVGVTETVELCDDPKTEAKSVSKPKGKKAKDTKKSVRVPAEPQTMSDVLISCTTCHSEFPSRNKLFDHLKATGHARAPSSSTSLNSVTNSRNKKEKRKNR

Annotated regions:
phrase: FKLIQAAYDVLSDPQERAW
type: CONSERVED_SITE
name: DnaJ_domain_CS
description: DnaJ domain, conserved site

phrase: LYCPACDKSFKTEKAMRNHEKSKKH
type: DOMAIN
name: Znf_C2H2_jaz
description: Zinc finger, double-stranded RNA binding

phrase: YEALGVRRDASEEELKKA
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: YRKLALKWHPDKNLD
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: EAAEQFKLIQAAYDVLSDPQ
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: ERAWYDNHREALLKGGLDG
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: LYCPACDKSFKTEKAMRNHEKSKK
type: DOMAIN
name: Znf_C2H2_type
description: Zinc finger C2H2-type

phrase: ISCTTCHSEFPSRNKLFDHLKATG
type: DOMAIN
name: Znf_C2H2_type
description: Zinc finger C2H2-type

phrase: CHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLS
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: YDGLYCPACDKSFKTEKAMRNHEKSKKHREMVAL
type: DOMAIN
name: Matrin/U1-like-C_Znf_C2H2
description: Matrin/U1-C-like, C2H2-type zinc finger

phrase: FYTVYRNVFEMIAKEELESALEEDMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV
type: DOMAIN
name: ZUO1-like_ZHD
description: Zuotin-like, zuotin homology domain

phrase: KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQ
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: CPACDKSFKTEKAMRNHEKSKK
type: DOMAIN
name: Znf_C2H2_type
description: Zinc finger C2H2-type

phrase: CTTCHSEFPSRNKLFDHLKATG
type: DOMAIN
name: Znf_C2H2_type
description: Zinc finger C2H2-type

phrase: LYCPACDKSFKTEKAMRNHEKSKK
type: DOMAIN
name: Znf_C2H2_type
description: Zinc finger C2H2-type

phrase: HYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWY
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain

phrase: CHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYDNH
type: DOMAIN
name: DnaJ_domain
description: DnaJ domain
Protein sequence:
MAPGTLDDNSADGSEATWSEASARFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKTRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRSRRDRSGK

Annotated regions:
phrase: RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKTRKKTSRARKLSTLRSFYHFLND
type: DOMAIN
name: Integrase_SAM-like_N
description: Integrase, SAM-like, N-terminal

phrase: ATWSEASARFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKTRKKTSRARKLSTLRSFYHFL
type: DOMAIN
name: CB
description: Core-binding (CB) domain

phrase: KIPSFLGVDDVFHLLDSLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVY
type: DOMAIN
name: Integrase_catalytic
description: Integrase, catalytic domain

phrase: WRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHV
type: DOMAIN
name: Integrase_catalytic
description: Integrase, catalytic domain
Protein sequence:
MYPVDLHMHTVASTHAYSTLSDYIAQAKRKGIKLFSITDHGPDMADAPHHWHFINMRIWPRIVDGVGILRGIEANIKNTEGEIDCFGQMYDSLDLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYPIDIMAVAEAAAKHQVALEINNSSFIHSRKGSEDNCRAVAAAVRDAGGWIALGSDSHTAYTLGEFDEALKIIEAVDFPEDRILNVSPARMLGFLESRGMTPIAEFAEL

Annotated regions:
phrase: VDLHMHTVASTHAYSTLSDYIAQAKRKGIKLFSITDHGPDMADAPHHWHFINMRIWPRIVDGVGILRGIEANIK
type: DOMAIN
name: Pol/His_phosphatase_N
description: Polymerase/histidinol phosphatase, N-terminal

phrase: DLHMHTVASTHAYSTLSDYIAQAKRKGIKLFSITDHGPDMADAPHHWHFINMRIWPRIVDGVGILRGIEANIKNTEGEIDCFGQMYDSL
type: DOMAIN
name: PHP_dom
description: PHP domain
Protein sequence:
MNDDFQGQGFAGKRIALGVSGGIAAYKAAEILRGLQRAGCVVRVAMTKRACEFITPLTFRALSGSHVIVDDYAPDNPDPIAHITFSQSVDLLLIAPATANIIAKFANGIADDFLTSTYLASNAPVVVAPAMNTTMWNHPATQRNLNQLRADGIHIVEPDAGEMACGTIGPGRLSEPERIVAAALEILRAKESQAQHDLTGEHVLITAGATREELDPVRFLSNRSSGRMGFALAEAARARGAKVTIVAGATSVEPPANVELLRALSAEAMRDAVMKEISGATVFIAAAAVSDYRPMTRATNKLKKSAESLTLILEPTPDILAEVSEARQNGLLVVGFAAETDDVLNHARDKLKRKRLDAIVANDITREGAGFDTQTNVVTIITRLSDTPIELPLMSKLDAAHRILDEIARLRHEHNGE

Annotated regions:
phrase: LTGEHVLITAGATREELDPVRFLSNRSSGRMGFALAEAARARGAKVTIVAGATSVEPPANVELLRALSAEAMRDAVMKEISGATVFIAAAAVSDYRPMTRATNKLKKSAESLTLILEPTPDILAEVSEARQNGLLVVGFAAETDDVLNHARDKLKRKRLDAIVANDITREGAGFDTQTNVVTI
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal

phrase: KRIALGVSGGIAAYKAAEILRGLQRAGCVVRVAMTKRACEFITPLTFRALSGSHVIVDDYAPDNPDPIAHITFSQSVDLLLIAPATANIIAKFANGIADDFLTSTYLASNAPVVVAPAMNTTMWNHPATQRNLNQLRADGIHIVEPDAGEMACGTIGPGRLSEPERIVAAAL
type: DOMAIN
name: Flavoprotein
description: Flavoprotein
Protein sequence:
MAHDILIVDDEPDISGLVAGILEDEGYSARTARDADGALAEIAARRPNLIFLDIWLQGSRLDGLELLDIIKREHPEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFNADRLVVITERALETLRLRREVRELKQLTQPHTMVGRSSVIQQLRATVDRVGPTNSRILIVGPSGSGKELTARMIHAASARAQGPFVVINAAAITPERLEYELFGVEEGEGRERHRGALEEAHGGTLFLDEIADMPRETQNRVLRVLVEQTFSRIGSSEKVRVDVRIISSTGRHLEEEIAAGRFREDLYHRLSVVPIRVPPLAERREDIPDLVDFFIDLISQTTGLQRRKVGEDAMAVLQSHDWPGNVRQLRNNVERLLILAGGDPDAEVTASMLPPDVGALVPTLPNGNGGEHLMGLPLREAREVFEREYLAAQINRFGGNISRTAEFVGMERSALHRKLKALGVG

Annotated regions:
phrase: MVGRSSVIQQLRATVDRVGPTNSRILIVGPSGSGKELTARMIHAASARAQGPFVVINAAAITPERLEYELFGVEEGEGRERHRGALEEAHGGTLFLDEIADMPRETQNRVLRVLVEQTFSRIGSSEKVRVDVRIISSTGRHLEEEIAAGRFREDLYHRLSVVPIRVPPLAERREDIPDLVDFFIDLISQTTGLQRRKVGEDAMAVLQSHDWPGNVRQLRNNVERLL
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: TNSRILIVGPSGSGKELTARMIHAASARAQGPFVVINAAAITPERLEYELFGVEEGEGRERHRGALEEAHGGTLFLDEIADMPRETQNRVLRVLVEQTFSRIGSSEKVRVDVRIISSTGRHLEEEIAAGRFREDLYHRLS
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: DILIVDDEPDISGLVAGILEDEGYSARTARDADGALAEIAARRPNLIFLDIWLQGSRLDGLELLDIIKREHPEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFNADRLVVITERA
type: DOMAIN
name: Sig_transdc_resp-reg_receiver
description: Signal transduction response regulator, receiver domain

phrase: WPGNVRQLR
type: CONSERVED_SITE
name: Sigma_54_int_dom_CS
description: Sigma-54 interaction domain, conserved site

phrase: ILIVDDEPDISGLVAGILEDEGYSARTARDADGALAEIAARRPNLIFLDIWLQGSRLDGLELLDIIKREHPEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFNADRLV
type: DOMAIN
name: Sig_transdc_resp-reg_receiver
description: Signal transduction response regulator, receiver domain

phrase: GALEEAHGGTLFLDE
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_2
description: Sigma-54 interaction domain, ATP-binding site 2

phrase: HDILIVDDEPDISGLVAGILEDEGYSARTARDADGALAEIAARRPNLIFLDIWLQGSRLDGLELLDIIKREHPEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFNADRLVVI
type: DOMAIN
name: Sig_transdc_resp-reg_receiver
description: Signal transduction response regulator, receiver domain

phrase: MVGRSSVIQQLRATVDRVGPTNSRILIVGPSGSGKELTARMIHAASARAQGPFVVINAAAITPERLEYELFGVEEGEGRERHRGALEEAHGGTLFLDEIADMPRETQNRVLRVLVEQTFSRIGSSEKVRVDVRIISSTGRHLEEEIAAGRFREDLYHRLSVVP
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: REVFEREYLAAQINRFGGNISRTAEFVGMERSALHRKLK
type: DOMAIN
name: HTH_Fis
description: DNA binding HTH domain, Fis-type
Protein sequence:
MMLPQGYTFRKLKLTDYDNQYLETLKVLTTVGEISKEDFTELYNHWSSLPSIYHPYVITNASGIVVATGMLFVEKKLIHECGKVGHIEDISVAKSEQGKKLGYYLVTSLTKVAQENDCYKVILDCSPENVGFYEKCGYKDGGVEMVCRF

Annotated regions:
phrase: YTFRKLKLTDYDNQYLETLKVLTTVGEISKEDFTELYNHWSSLPSIYHPYVITNASGIVVATGMLFVEKKLIHECGKVGHIEDISVAKSEQGKKLGYYLVTSLTKVAQENDCYKVILDCSPENVGFYEKCGYKDGGVEMVCR
type: DOMAIN
name: GNAT_dom
description: GNAT domain

phrase: SKEDFTELYNHWSSLPSIYHPYVITNASGIVVATGMLFVEKKLIHECGKVGHIEDISVAKSEQGKKLGYYLVTSLTKVAQENDCYKVILDCSPENVGFYEKCG
type: DOMAIN
name: GNAT_dom
description: GNAT domain
Protein sequence:
MVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGGMGGMFGGGDK

Annotated regions:
phrase: KPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTG
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: VLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKI
type: DOMAIN
name: Signal_recog_particl_SRP54_hlx
description: Signal recognition particle SRP54, helical bundle

phrase: PSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL
type: DOMAIN
name: SRP54_GTPase_dom
description: Signal recognition particle, SRP54 subunit, GTPase domain

phrase: PSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL
type: DOMAIN
name: SRP54_GTPase_dom
description: Signal recognition particle, SRP54 subunit, GTPase domain

phrase: LGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAAGHNKRRIIQQAVFNE
type: DOMAIN
name: Signal_recog_particl_SRP54_hlx
description: Signal recognition particle SRP54, helical bundle

phrase: HFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAK
type: DOMAIN
name: Signal_recog_particle_SRP54_M
description: Signal recognition particle, SRP54 subunit, M-domain

phrase: PVIFIGTGEHMDE
type: DOMAIN
name: SRP54_GTPase_dom
description: Signal recognition particle, SRP54 subunit, GTPase domain
Protein sequence:
MSRIGLKVIEVPAGVTVTKDGENNITVKGPKGELTRHFNPIIEMHEEGNLINFTRSSDSDRAMHGTMRANLNNMILGVTEGFKKTLDLIGVGYRAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKTGK

Annotated regions:
phrase: PEPYKGKG
type: CONSERVED_SITE
name: Ribosomal_uL6_CS
description: Large ribosomal subunit protein uL6, conserved site

phrase: VPAGVTVTKDGENNITVKGPKGELTRHFNPIIEMHEEGNLINFTRSSDSDRAMHGTMRANLNNMILGVTE
type: DOMAIN
name: Ribosomal_uL6_a/b-dom
description: Large ribosomal subunit protein uL6, alpha-beta domain

phrase: IGVGYRAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIR
type: DOMAIN
name: Ribosomal_uL6_a/b-dom
description: Large ribosomal subunit protein uL6, alpha-beta domain
Protein sequence:
MTSIHVQVPATTANIGAGFDCLGAALSLHNQFQFRLAGESEPFFSLELVGADVETQKLEATADNLLYRAFAKVFATLGQPVPHVNIAIDLKVPLSRGLGSSATAIVGGLVGANALAGSPLSQREIMNLAIEMEGHPDNVVPALLGGCQLSVKHQQDWVICPWVWHENVVPVVAIPDFELSTEEARAVLPQQYARAQAIFNASRLGLLPHGLAQNNPEYLTAALDDQIHQPYRKNLIKGYDPVQQAAIAAGAYGMVISGAGPTLLALAAPENAPKVATAMQTAWEGIGVKAIAHVLEIDQQGTVIL

Annotated regions:
phrase: NLLYRAFAKVFATLGQPVPHVNIAIDLKVPLSRGLGSSATAIVGGLVGANALAGSPLSQREIMNLAIEMEGHPDNVVPALLG
type: DOMAIN
name: GHMP_kinase_N_dom
description: GHMP kinase N-terminal domain

phrase: VPLSRGLGSSA
type: CONSERVED_SITE
name: GHMP_knse_ATP-bd_CS
description: GHMP kinase, ATP-binding, conserved site

phrase: LTAALDDQIHQPYRKNLIKGYDPVQQAAIAAGAYGMVISGAGPTLLALAAPENAPKVATAMQTAW
type: DOMAIN
name: GHMP_kinase_C_dom
description: GHMP kinase, C-terminal domain
Protein sequence:
MEALRQRIEAAFEARADITPSTVDANVRSDVQHVINMLDKGEVRVAEKIDGQWHVHQWLKKAVLLSFRIFDNAVIDGAETKYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Annotated regions:
phrase: VDEGTMVDTWATVGSCAQIGKNVHLSGG
type: CONSERVED_SITE
name: Hexapep_transf_CS
description: Hexapeptide transferase, conserved site

phrase: LRQRIEAAFEARADITPSTVDANVRSDVQHVINMLDKGEVRVAEKIDGQWHVHQWLKKAVLLSFR
type: DOMAIN
name: THP_succinylTrfase_dom1
description: Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1

phrase: PTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYI
type: REPEAT
name: Hexapep
description: Hexapeptide repeat
Protein sequence:
MVSNQDYTEKIRQLMKDHNSWMESSINLIASENITSSRVKEALLSDLSHRYAEGLPGERLYEGCRYIDEIEELTIELSKRLFRAEHANVQPTSGVVANLACFFATAEVGDPIMAMEVPYGGHISHARVSAAGVRGFQIYTHPFDFENMNIDADAMKKKILEVKPRIILFGGSLFLFPHPVEEALEAAEEVGARIMYDGAHVLGLIAGGYFQDPLREGADMLVGSTHKTFPGPQGGIILCREELAADIDEAVFPGLVSNHHLHHVAGLGIATAEMLEFGAEYAAQTINNARKLAENLHELGFNVLCEHLDFTESHQVVMDVSDIGRAAEISKRLEANNIILNKNLLPWDDVNRSDDPSGIRIGTQEITRRGMKESEMSEVAEYIKRVVMDGKDVRDEVAEFMSSYTRVHYAFEDSEAYKYMEIQ

Annotated regions:
phrase: DMLVGSTHKTFPGPQG
type: BINDING_SITE
name: Ser_HO-MeTrfase_PLP_BS
description: Serine hydroxymethyltransferase, pyridoxal phosphate binding site

phrase: YTEKIRQLMKDHNSWMESSINLIASENITSSRVKEALLSDLSHRYAEGLPGERLYEGCRYIDEIEELTIELSKRLFRAEHANVQPTSGVVANLACFFATAEVGDPIMAMEVPYGGHISHARVSAAGVRGFQIYTHPFDFENMNIDADAMKKKILEVKPRIILFGGSLFLFPHPVEEALEAAEEVGARIMYDGAHVLGLIAGGYFQDPLREGADMLVGSTHKTFPGPQGGIILCREELAADIDEAVFPGLVSNHHLHHVAGLGIATAEMLEFGAEYAAQTINNARKLAENLHELGFNVLCEHLDFTESHQVVMDVSDIGRAAEISKRLEANNIILNKNLLPWDDVNRSDDPSGIRIGTQEITRRGMKESEMSEVAEY
type: DOMAIN
name: SHMT-like_dom
description: Serine hydroxymethyltransferase-like domain
Protein sequence:
MNRVQVDFKGLPAHILENSIAAESLQNTRSSDNVLTPLTFPKSKVALWDPSANGEVVSLHFSYYRNPRLFLVEKALRLAHRHARQTNKPRFFCFLLGTLAVDSDEEGVTITLDRFDPGREQTGCLGKAPTALLPGDILVPCVFEAQHAASSTVHSSEDLNISFKMLQHFCCSKELLELSKLLTLRAQLSCSENMDRLTFNLSWAAVTLACTLDAVPIRAVPIIPTALARNLSSPAGVTQNSKRGFLTMDQTRKLLLILESDPKAYTLPLVGIWLSGVTHIHNPLVWAWCLRYLHSSSLQDKVLSEGGTFLVVLYSLTHRDPEFYQCKPSTGQQQLSFQLLTSRDSLTLYKNVEPSEGRPLQFELSSENQNQETVLFEEVLSQSVLTGTTLGAASAAPQNKLSISDHDSGVEDEDLSPRPSPNPHPVSQQTKRVHPLVPELSMVLDGSFLDGSVVNTQGSTPLSHSQSNVHRRNSSPALQGLSVLRPLVQGSVTKPPPIRRPLTPILSQPKNKLHPNPSQQTPQHSVSRKSLPSMRRSREGSSASSVSSSSSSSSTKNASPNGSFHQQRQRLSQGFPNKPQLIYSGPPTSGHSSAKKSSSVPSQTPVPHPSQHRIFHSTPAVNPCNCCTNHPSVAPLYQNNTWQGTPGYPTAVHSPCVFHCSPETVPPGDHCLSPSRQSLGCRVSPTKSPVCYHSTPPHYSPSSGPCVPTIISNKGLVEQTPSCQAQCCQVKGSKEPCLDTPMGLLPADAYRMLIDQERQLKLLQLQIQKLLESQSKVPEVSSEQNAQQQRPNQVPASPPKRTSVSIAVGTGASLFWSTPQETSTHEASSLEWQTETEPKSGCQNDSTVTSRDRSESACHYSEEHCPGSPQHPTSPQHNTSSGFGVQMFQSPVLGESASMYYQSQSQSKDLSENREIDDPRFYHELLGQVQSRLQDSVIVEDKVEQDQQSLLKTQSLSPVVHQSRKPLTTSSIPQTQKTKQPSSPPNQDRVLSATLKQLQQFGVNIDLDSSQEKTTRATVESASTLACINPEAVIPRLALSEPVGASIWGPSGSVDLSLEANAIALKYLSDSQLSRLSLGSQSSSPHSDPSTILLRRPAVEKSNVALSILSPSNMSLATCKYMKKYGLIEGEISSEEEQEDPIQVDSALGCSVQHETSKTISLGQEREEQNTAVLKNITNKPVVNLHTSPIDSQEQILQDLRPKMQLLLRGGTNSEKENATKRNLIERRSSLTENQRTQEVVDPQGSVGNFLDLSRLRQLPKLF

Annotated regions:
Protein sequence:
MGQKVNPVGLRIGVIRDWESKWFAGKDYADFLHEDLKIREFISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVAENIARQLENRISFRRAQKQTIQRTMRAGAQGIKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATAEADTTYGKLGVKVWIYRGEVLPTKKNTAEGGK

Annotated regions:
phrase: AANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVAENIARQL
type: DOMAIN
name: KH_dom
description: K Homology domain

phrase: ARSEYYSEGTVPLHTLRADIDYATAEADTTYGKL
type: CONSERVED_SITE
name: Ribosomal_uS3_CS
description: Small ribosomal subunit protein uS3, conserved site

phrase: IREFISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEI
type: DOMAIN
name: KH_dom_type_2
description: K Homology domain, type 2

phrase: KIREFISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRA
type: DOMAIN
name: KH_dom_type_2
description: K Homology domain, type 2

phrase: IARQLENRISFRRAQKQTIQRTMRAGAQGIKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATAEADTTYGKLGVKVW
type: DOMAIN
name: Ribosomal_uS3_C
description: Small ribosomal subunit protein uS3, C-terminal
Protein sequence:
MTDKLIIFDTTLRDGEQSPGASMTKEEKIRIAKHLERMKVDVIEAGFAASSNGDFDAIHTIAGLVKDSTICSLARANDKDIQRAADALKPANSARIHTFIATSPLHMEKKLRMTPDQVFEQARLAVRFARKFTDNVEFSPEDGSRSDLDFLCRVLEAVIAEGATTINIADTVGYGVPELYGNLVKTLRERIPNSDKAIFSVHCHNDLGMAVANSLAGVKIGGARQVECTINGLGERAGNTSLEEIVMAVKTRKDYFGLDVGLDTTQIVPTSKLVSQITGFVVQPNKAVVGANAFAHASGIHQDGVLKARDTYEIMRAEDVGWTANKIVLGKLSGRNAFKQRLQELGVSLDSETELNAAFMRFKDLADRKSEIFDEDIIAIVSEESALAQEQEHYKFVSLSQRSETGEQPQAKVVFALDGKEVTGEARGNGPVDATFNAIEGEVGSGSELLLYSVNAITTGTQAQGEVTVRLSKSGRIVNGVGTDPDIVAASAKAYIAALNKLHSKDDKLNPQRS

Annotated regions:
phrase: LIIFDTTLRDGEQSPGASMTKEEKIRIAKHLERMKVDVIEAGFAASSNGDFDAIHTIAGLVKDSTICSLARANDKDIQRAADALKPANSARIHTFIATSPLHMEKKLRMTPDQVFEQARLAVRFARKFTDNVEFSPEDGSRSDLDFLCRVLEAVIAEGATTINIADTVGYGVPELYGNLVKTLRERIPNSDKAIFSVHCHNDLGMAVANSLAGVKIGGARQVECTINGLGERAGNTSLEEIVMAVKTRKDYFGLDVGLDTTQI
type: DOMAIN
name: PYR_CT
description: Pyruvate carboxyltransferase

phrase: FSVHCHNDLGMAV
type: CONSERVED_SITE
name: AIPM/Hcit_synth_CS
description: Alpha-isopropylmalate/homocitrate synthase, conserved site

phrase: VVGANAFAHASGIHQDGVLKARDTYEIMRAEDVGWTANKIVLGKLSGRNAFKQRLQELGVSLDSETELNAAFMRFKDLADR
type: DOMAIN
name: LeuA/HCS_post-cat
description: 2-isopropylmalate synthase/homocitrate synthase, post-catalytic domain

phrase: EIFDEDIIAIVSEESALAQEQEHYKFVSLSQRSETGEQPQAKVVFALDGKEVTGEARGNGPVDATFNAIEGEVGSGSELLLYSVNAITTGTQAQGEVTVRLSKSGRIVNGVGTDPDIVAASAKAYIAALNK
type: DOMAIN
name: 2-isopropylmalate_synth_dimer
description: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain

phrase: LIIFDTTLRDGEQSPGASMTKEEKIRIAKHLERMKVDVIEAGFAASSNGDFDAIHTIAGLVKDSTICSLARANDKDIQRAADALKPANSARIHTFIATSPLHMEKKLRMTPDQVFEQARLAVRFARKFTDNVEFSPEDGSRSDLDFLCRVLEAVIAEGATTINIADTVGYGVPELYGNLVKTLRERIPNSDKAIFSVHCHNDLGMAVANSLAGVKIGGARQVECTINGLGERAGNTSLEEIVMAVKTRKDYFGLDVGLDTTQIVPTSKL
type: DOMAIN
name: PYR_CT
description: Pyruvate carboxyltransferase

phrase: LRDGEQSPGASMTKEE
type: CONSERVED_SITE
name: AIPM/Hcit_synth_CS
description: Alpha-isopropylmalate/homocitrate synthase, conserved site

phrase: EIFDEDIIAIVSEESALAQEQEHYKFVSLSQRSETGEQPQAKVVFALDGKEVTGEARGNGPVDATFNAIEGEVGSGSELLLYSVNAITTGTQAQGEVTVRLSKSGRIVNGVGTDPDIVAASAKAYIAALNKL
type: DOMAIN
name: 2-isopropylmalate_synth_dimer
description: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain