Protein sequence:
MGAATSALNRRQLDEFEHIRLRPNGKKKYQIKHLIWAGKKMDRFGLHEKLLETEEGCKKIIEVLSPLEPTGSEGMKSLYNLVCVLLCVHQEKKVKDTEEALAIVRQCCHLVDKEKTAVTPPGGQQKNNTGGTATPGGSQNFPAQQQGNAWVHVPLSPRTLNAWVKAVEEKKFGAEIVPMFQALSEGCTPYDINQMLNVLGDHQGALQIVKEIINEEAAQWDVTHPPPAGPLPAGQLRDPGGSDIAGTTSTVQEQLEWIYTANPRVDVGAIYRRWIILGLQKCVKMYNPVSVLDIRQGPKEPFKDYVDRFYKAIRAEQASGEVKQWMTESLLIQNANPDCKVILKGLGMHPTLEEMLTACQGVGGPSYKAKVMAEMMQNLQSQNMVQQGGGRGRPRPPPKCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCRGQVNFFRVWPVDGDKTKKFSRSHSWGGTKCAPSTEQLYTLRPSKEAPAAVCRERETNEKSEQKPPSEQSRLERGIFFELPLWRRPIRTCIIGGTAVKALLDTGADDTIIKDTDLQLRGSWRPKIVGGIGGGLNVKEYDNVEVQLEDKILRGTVLIGATPINIIGRNFLAQAGAKLVMGQLSQTIPITPVRLKEGARGPRLKQWPLSKEKIIALQEICKTLEEEGKLSRVGGDNAYNTPVFCIRKKDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLKKMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMDDLWVGSQEEGPKHDQLVQTLRNRLQEWGLETPEKKVQREPPFEWMGYKLWPHKWKLQSIELEKKEQWTVNDLQKLVGKLNWAAQLYPGLRTKNICKLLRGKKNLLDVVEWTPEAEAEYEENKEILKTEQEGTYYAPEKPLRAAVQKLGDGQWSYQFKQEGKILKVGKFAKQKATHTNELRVLAGVVQKIGKEALVIWGQLPTFELPVERDTWEQWWADYWQVSWIPEWDFVSVPPLVTLWYTLTKEPIPGEDVYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQQAELTAIKMALEDSGPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIAQMVQKEAIYLQWVPAHKGIGGNEEIDKLVSKGVRRILFIGRIEEAQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKCQVKGEPIHGQVDASPGVWQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPNFTSQEVAAMCWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMACHIHNFKRKGGIGGLTAAERLINMITTQLEINTLQTKIQKILNFRVYYREGRDPVWKGPARLIWKGEGAVVLKEGEELKVVPRRKAKIIKDYEPRKTLGDETHLEGAGGSDHQMAGDS

Annotated regions:
phrase: FRVYYREGRDPVWKGPARLIWKGEGAVVLKEGEELKVVPRRKAKIIK
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: MYNPVSVLDIRQGPKEPFKDYVDRFYKAIRAEQASGEVKQWMTESLLIQNANPDCKVILKGLGMHPTLEEMLT
type: DOMAIN
name: Gag_p24_C
description: Retroviral nucleocapsid Gag protein p24, C-terminal domain

phrase: KCYNCGKFGHMQRQCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KCLKCGKPGHLAKDC
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: ATSALNRRQLDEFEHI
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: RPNGKKKYQIKHLIWAGK
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: DRFGLHEKLLETEEG
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: TGSEGMKSLYNLVCVLLCV
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: HQEKKVKDTEEAL
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: KCLKCGKPGHLAKDC
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: VDASPGVWQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPNFTSQEVAAMCWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMACHIHNFKRKGGIGGLTAAERLINM
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: VYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQQAELTAIKMALEDSGPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIAQMVQKEAIYLQWVPAHKGIGGNEEIDKLVSKG
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: QSIELEKKEQWTVNDLQKLVGKLNWAAQLYPGLRTKNICKLLRGKKNLLDVVEWTPEAEA
type: DOMAIN
name: RVT_thumb
description: Reverse transcriptase thumb

phrase: ALLDTGADDTI
type: ACTIVE_SITE
name: Aspartic_peptidase_AS
description: Aspartic peptidase, active site

phrase: KCYNCGKFGHMQRQCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: GRIEEAQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: IPGEDVYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQQAELTAIKMALEDSGPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIAQMVQKEAIYLQWVPAHKGIGGNEEIDKLVSKGV
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: KCLKCGKPGHLAKDCR
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KCYNCGKFGHMQRQCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: AQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKCQ
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: EGKLSRVGGDNAYNTPVFCIRKKDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLKKMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMDDLWVGSQEEGPKHDQLVQTLRNRLQEWGLETPEKKVQREPPFEWMGYK
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: YYAPEKPLRAAVQKLGDGQWSYQFKQEGKILKVGKFAKQKATHTNELRVLAGVVQKIGKEALVIWGQLPTFELPVERDTWEQWWADYWQVSWIPEWDFV
type: DOMAIN
name: RVT_connect
description: Reverse transcriptase connection

phrase: WRRPIRTCIIGGTAVKALLDTGADDTIIKDTDLQLRGSWRPKIVGGIGGGLNVKEYDNVEVQLEDKILRGTVLIGATPINIIGRNFLAQAGAK
type: DOMAIN
name: Retropepsins
description: Retropepsins

phrase: IRKKDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLKKMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMDDLWVGSQEEGPKHDQLVQTLRNRLQEWGLETPEKKVQREPPFEWMGYK
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: GAATSALNRRQLDEFEHIRLRPNGKKKYQIKHLIWAGKKMDRFGLHEKLLETEEGCKKIIEVLSPLEPTGSEGMKSLYNLVCVLLCVHQEKKVKDTEEALAIVRQCCHLVDKEKTAVTPPGGQQKNNTGGTATPGGSQN
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: ASPGVWQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPNFTSQEVAAMCWWGKVEHTTGVPYN
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: VYYREGRDPVWKGPARLIWKGEGAVVLKEGEELKVVPRRKAKI
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: VKALLDTGADDTIIKDTDLQLRGSWRPKIVGGIGGGLNVKEYDNVEVQLEDKILRGTVLIGATPINIIGRN
type: DOMAIN
name: Peptidase_A2_cat
description: Peptidase A2A, retrovirus, catalytic

phrase: TCIIGGTAVKALLDTGADDTIIKDTDLQLRGSWRPKIVGGIGGGLNVKEYDNVEVQLEDKILRGTVLIGATPINIIGRNFL
type: DOMAIN
name: Retropepsin-like_cat_dom
description: Retropepsin-like catalytic domain