Protein sequence:
MELITNELLYKTYKQKPVGVEEPVYDQAGNPLFGERGAIHPQSTLKLPHKRGERNVPTSLASLPKRGDCRSGNSKGPVSGIYLKPGPLFYQDYKGPVYHRAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYICIDGCITVKSATRSHQRVLRWVHNRLDCPLWVTSCSDTKEEGATKKKQQKPDRLEKGRMKIVPKESEKDSKTKPPDATIVVDGVKYQVKKKGKVKSKNTQDGLYHNKNKPPESRKKLEKALLAWAILAVVLIEVTMGENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDVELKTIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILIMNRTQANLTEGQPPRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGVLTRGPCNFEIAASDVLFKEHECTGVFQDTAHYLVDGVTNSLESARQGTAKLTTWLGKQLGILGKKLENKSKTWFGAYAASPYCDVDRKIGYIWFTKNCTPACLPKNTKIIGPGKFDTNAEDGKILHEMGGHLSEVLLLSLVVLSDFAPETASAMYLILHFSIPQSHVDITDCDKTQLNLTIELTTADVIPGSVWNLGKYVCIRPDWWPYETAAVLAFEEVGQVVKIVLRALRDLTRIWNAATTTAFLVCLIKMVRGQVVQGILWLLLITGVQGHLDCKPEYSYAIAKNDRVGPLGAEGLTTVWKDYSHEMKLEDTMVIAWCKGGKFTYLSRCTRETRYLAILHSRALPTSVVFKKLFEGQKQEDTVEMDDDFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMLANRDTLDTAVVRTYRRSVPFPYRQGCITQKTLGEDLYDCALGGNWTCVTGDQSRYTGGLIESCKWCGYKFQKSEGLPHYPIGKCRLNNETGYRLVDDTSCDREGVAIVPHGLVKCKIGDTTVQVIATDTKLGPMPCKPHEIISSEGPIEKTACTFNYTRTLKNKYFEPRDSYFQQYMLKGDYQYWFDLEVTDHHRDYFAESILVVVVALLGGRYVLWLLVTYMVLSEQKASGAQYGAGEVVMMGNLLTHDNVEVVTYFFLLYLLLREESVKKWVLLLYHILVAHPLKSVIVILLMIGDVVKADPGGQGYLGQIDVCFTMVVIIIIGLIIARRDPTIVPLITIVASLRVTGLTYSPGVDAAMAVITITLLMVSYVTDYFRYKRWLQCILSLVSGVFLIRCLIHLGRIETPEVTIPNWRPLTLILFYLISTTVVTMWKIDLAGLLLQGVPILLLITTLWADFLTLILILPTYELVKLYYLKTIKTDIEKSWLGGLDYKRVDSIYDVDESGEGVYLFPSRQKAQKNFSMLLPLVRATLISCVSSKWQLIYMAYLSVDFMYYMHRKVIEEISGGTNMISRIVAALIELNWSMEEEESKGLKKFYLLSGRLRNLIIKHKVRNETVAGWYGEEEVYGMPKIMTIIKASTLNKNKHCIICTVCEGRKWKGGTCPKCGRHGKPITCGMSLADFEERHYKRIFIREGNFEGPFRQEYNGFIQYTARGQLFLRNLPILATKVKMLMVGNLGEEVGDLEHLGWILRGPAVCKKITEHERCHINILDKLTAFFGIMPRGTTPRAPVRFPTSLLKVRRGLETGWAYTHQGGISSVDHVTAGKDLLVCDSMGRTRVVCQSNNKLTDETEYGVKTDSGCPDGARCYVLNPEAVNISGSKGAVVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEESKPTKIMSGIQTVSKNTADLTEMVKKITSMNRGDFKQITLATGAGKTTELPKAVIEEIGRHKRVLVLIPLRAAAESVYQYMRLKHPSISFNLRIGDMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSYIFLDEYHCATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQKHPIEEFIAPEVMEGEDLGSQFLDIAGLKIPVDEMKGNMLVFVPTRNMAVEVAKKLKAKGYNSGYYYSGEDPANLRVVTSQSPYVIVATNAIESGVTLPDLDTVVDTGLKCEKRVRVSSKIPFIVTGLKRMAVTVGEQAQRRGRVGRVKPGRYYRSQETATGSKDYHYDLLQAQRYGIEDGINVTKSFREMNYDWSLYEEDSLLITQLEILNNLLISEDLPAAVKNIMARTDHPEPIQLAYNSYEVQVPVLFPKIRNGEVTDTYENYSFLNARKLGEDVPVYIYATEDEDLAVDLLGLDWPDPGNQQVVETGKALKQVAGLSSAENALLVALFGYVGYQALSKRHVPMITDIYTIEDQRLEDTTHLQYAPNAIKTEGTETELKELASGDVEKIMGAISDYAAGGLDFVKSQAEKIKTAPLFKENVEAARGYVQKLIDSLIEDKDVIIRYGLWGTHTALYKSIAARLGHETAFATLVLKWLAFGGETVSDHIRQAAVDLVVYYVMNKPSFPGDTETQQEGRRFVASLFISALATYTYKTWNYNNLSKVVEPALAYLPYATSALKMFTPTRLESVVILSTTIYKTYLSIRKGKSDGLLGTGISAAMEILSQNPVSVGISVMLGVGAIAAHNAIESSEQKRTLLMKVFVKNFLDQAATDELVKENPEKIIMALFEAVQTIGNPLRLIYHLYGVYYKGWEAKELSERTAGRNLFTLIMFEAFELLGMDSEGKIRNLSGNYILDLIHGLHKQINRGLKKIVLGWAPAPFSCDWTPSDERIRLPTDSYLRVETKCPCGYEMKALKNVSGKLTKVEESGPFLCRNRPGRGPVNYRVTKYYDDNLREIRPVAKLEGQVEHYYKGVTARIDYSKGKTLLATDKWEVEHGTLTRLTKRYTGVGFRGAYLGDEPNHRDLVERDCATITKNTVQFLKMKKGCAFTYDLTISNLTRLIELVHRNNLEEKEIPTATVTTWLAYTFVNEDVGTIKPVLGERVIPDPVVDINLQPEVQVDTSEVGITIIGKEAVMTTGVTPVMEKVEPDTDNNQSSVKIGLDEGNYPGPGVQTHTLVEEIHNKDARPFIMVLGSKSSMSNRAKTARNINLYTGNDPREIRDLMAEGRILVVALRDIDPDLSELVDFKGTFLDREALEALSLGQPKPKQVTKAAIRDLLKEERQVEIPDWFTSDDPVFLDIAMKKDKYHLIGDVVEVKDQAKALGATDQTRIVKEVGSRTYTMKLSSWFLQASSKQMSLTPLFEELLLRCPPATKSNKGHMASAYQLAQGNWEPLGCGVHLGTVPARRVKMHPYEAYLKLKDLVEEEEKKPRIRDTVIREHNKWILKKIKFQGNLNTKKMLNPGKLSEQLDREGHKRNIYNNQISTVMSSAGIRLEKLPIVRAQTDTKSFHEAIRDKIDKNENRQNPELHNKLLEIFHTIADPSLKHTYGEVTWEQLEAGINRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIRYYETAIPKNEKRDVSDDWQAGDLVDEKKPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFNKVRKEWDLFNEPVAVSFDTKAWDTQVTSRDLHLIGEIQKYYYRKEWHKFIDTITDHMVEVPVITADGEVYIRNGQRGSGQPDTSAGNSMLNVLTMIYAFCESTGVPYKSFNRVAKIHVCGDDGFLITEKGLGLKFSNKGMQILHEAGKPQKLTEGEKMKVAYKFEDIEFCSHTPVPVRWSDNTSSYMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRRICLLVLSQRPETAPSTQTTYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLGIWTKHTSKRIIQDCVAIGKEEGNWLVNADRLISSKTGHLYIPDKGFTLQGKHYEQLQLGAETNPVMGVGTERYKLGPIVNLLLRRLKVLLMAAVGASS

Annotated regions:
phrase: PTKIMSGIQTVSKNTADLTEMVKKITSMNRGDFKQITLATGAGKTTELPKAVIEEIGRHKRVLVLIPLRAAAESVYQYMRLKHPSISFNLRIGDMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSYIFLDEYHCATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQKHPIEEFIAPEVMEGEDLGSQFLDIAGLKIPV
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain

phrase: GLKIPVDEMKGNMLVFVPTRNMAVEVAKKLKAKGYNSGYYYSGEDPANLRVVTSQSPYVIVATNAIESGVTLPDLDTVVDTGLKCEKRVRVSSKIPFIVTGLKRMAVTVGEQAQRRGRVGRVKPGRYYRSQETATGSKDYHYDLLQAQRYGIEDGINVTKSFREM
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: LQRHEWNKHGW
type: ACTIVE_SITE
name: RNase_T2_His_AS_2
description: Ribonuclease T2, His active site 2

phrase: VEVAKKLKAKGYNSGYYYSGEDPANLRVVTSQSPYVIVATNAIESGVTLPDLDTVVDTGLKCEKRVRVSSKIPFIVTGLKRMAVTVGEQAQRRGRVGRV
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: NVTKSFREMNYDWSLYEEDSLLITQLEILNNLLISEDLPAAVKNIMARTDHPEPIQLAYNSYEVQVPVLFPKIRNGEVTDTYENYSFLNARKLGEDVPVYIYATEDEDLAVDLLGLDWPDPGNQQVVETGKALKQVAGLSS
type: DOMAIN
name: NS3-hel_C_flaviviridae
description: Flavivridae NS3 helicase, C-terminal helical domain

phrase: ITSMNRGDFKQITLATGAGKTTELPKAVIEEIGRHKRVLVLIPLRAAAESVYQYMRLKHPSISFNLRIGDMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSYIFLDEYHCATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQKHPIEEFI
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain

phrase: MELITNELLYKTYKQKPVGVEEPVYDQAGNPLFGERGAIHPQSTLKLPHKRGERNVPTSLASLPKRGDCRSGNSKGPVSGIYLKPGPLFYQDYKGPVYHRAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYICIDGCITVKSATRSHQRVLRWVHNRLDCPLWVTS
type: DOMAIN
name: Peptidase_C53
description: Peptidase C53, pestivirus Npro

phrase: RNLIIKHKVRNETVAGWYGEEEVYGMPKIMTIIKASTLNKNKHCIICTVCEGRKWKGGTCPKCGRHGKPITCGMSLADFEERHYKRIFIREGNFEGPFRQEYNGFIQYTARGQLFLRNLPILATKVKMLMVGNLGEEVGDLEHLGWIL
type: DOMAIN
name: NS2_C74
description: Pestivirus NS2, peptidase C74

phrase: GPAVCKKITEHERCHINILDKLTAFFGIMPRGTTPRAPVRFPTSLLKVRRGLETGWAYTHQGGISSVDHVTAGKDLLVCDSMGRTRVVCQSNNKLTDETEYGVKTDSGCPDGARCYVLNPEAVNISGSKGAVVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSG
type: DOMAIN
name: Pestivirus_NS3_S31
description: Pestivirus NS3, peptidase S31

phrase: GWAYTHQGGISSVDHVTAGKDLLVCDSM
type: DOMAIN
name: Pestivirus_NS3_S31
description: Pestivirus NS3, peptidase S31

phrase: NNKLTDETEYGVKTDSGCPDGARCYVLN
type: DOMAIN
name: Pestivirus_NS3_S31
description: Pestivirus NS3, peptidase S31

phrase: GTPAFFDLKNLKGWSGLPIFEASSGRVV
type: DOMAIN
name: Pestivirus_NS3_S31
description: Pestivirus NS3, peptidase S31

phrase: EMKGNMLVFVPTRNMAVEVAKKLKAKGYNSGYYYSGEDPANLRVVTSQSPYVIVATNAIESGVTLPDLDTVVDTGLKCEKRVRVSSKIPFIVTGLKRMAVTVGEQAQRRGRVGR
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: GPAVCKKITEHERCHINILDKLTAFFGIMPRGTTPRAPVRFPTSLLKVRRGLETGWAYTHQGGISSVDHVTAGKDLLVCDSMGRTRVVCQSNNKLTDETEYGVKTDSGCPDGARCYVLNPEAVNISGSKGAVVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEESKPTKIMSGIQTVSKNTADLTEMV
type: DOMAIN
name: Pestivirus_NS3_S31
description: Pestivirus NS3, peptidase S31

phrase: EEGATKKKQQKPDRLEKGRMKIVPKESEKDSKTKPPDATIVVDGVKYQVKKKGKV
type: DOMAIN
name: Capsid-C_pestivirus
description: Capsid protein C, pestivirus

phrase: MELITNELLYKTYKQKPVGVEEPVYDQAGNPLFGERGAIHPQSTLKLPHKRGERNVPTSLASLPKRGDCRSGNSKGPVSGIYLKPGPLFYQDYKGPVYHRAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYICIDGCITVKSATRSHQRVLRWVHNRLDCPLWVTS
type: DOMAIN
name: Peptidase_C53
description: Peptidase C53, pestivirus Npro

phrase: LDCKPEYSYAIAKNDRVGPLGAEGLTTVWKDYSHEMKLEDTMVIAWCKGGKFTYLSRCTRETRYLAILHSRALPTSVVFKKLFEGQKQEDTVEMDDDFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMLANRDTLDTAVVRTYRRSVPFPYRQGCITQKTLGEDLYDCALGGNWTCVTGDQSRYTGGLIESCKWCGYKFQKSEGLPHYPIGKCRLNNETGYRLVDDTSCDREGVAIVPHGLVKCKIGDTTVQVIATDTKLGPMPCKPHEIISSEGPIEKTACTFNYTRTLKNKYFEPRDSYFQQYMLKGDYQYWFDLEVTDHHRDYFAESILVVVVALLGGRYVLWLLVTYMVLSEQK
type: DOMAIN
name: Pestivirus_E2
description: Pestivirus envelope glycoprotein E2

phrase: PVAVSFDTKAWDTQVTSRDLHLIGEIQKYYYRKEWHKFIDTITDHMVEVPVITADGEVYIRNGQRGSGQPDTSAGNSMLNVLTMIYAFCESTGVPYKSFNRVAKIHVCGDDGFLITEKGLGLK
type: DOMAIN
name: RNA-dir_pol_PSvirus
description: RNA-directed RNA polymerase, catalytic domain

phrase: RGDFKQITLATGAGKTTELPKAVIEEIGRHKRVLVLIPLRAAAESVYQYMRLKHPSISFNLRIGDMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSYIFLDEYHCATPEQLAIIGKIHRFSESIRVVAMTATPAGSV
type: DOMAIN
name: Flavi_DEAD
description: Non-structural protein NS3-like, DEAD box helicase, flavivirus