Protein sequence:
MGQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWVRPFLPPPKPPTPLPQPLSPQPSAPLTSSLYPVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERRENPAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKRHKEMTKVLATVVAQNRDKDREESKLGDQRKIPLGKDQCAYCKEKGHWVRDCPKRPRKKPANSTLLNLGDQESQGQDPPPEPRITLKIGGQPVTFLVDTGAQHSVLTRPDGPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTHSFLYVPECPYPLLGRDLLTKLKAQIHFTGEGANVVGPKGLPLQVLTLQLEEEYRLFEPESTQKQEMDIWLKNFPQAWAETGGMGTAHCQAPVLIQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDGQRWLTKARKEAILSIPVPKNSRQVREFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQWGTEQQLAFEDIKKALLSSPALGLPDITKPFELFIDENSGFAKGVLVQKLGPWKRPVAYLSKKLDTVASGWPPCLRMVAAIAILVKDAGKLTLGQPLTILTSHPVEALVRQPPNKWLSNARMTHYQAMLLDAERVHFGPTVSLNPATLLPLPSGGNHHDCLQILAETHGTRPDLTDQPLPDADLTWYTDGSSFIRNGEREAGAAVTTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKLTVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGHQKGDSPQAKGNRLADDTAKKAATETHSSLTVLPTELIEGPKRPPWEYDDSDLDLVQKLEAHYEPKRGTWEYRGKTIMPEKYAKELISHLHKLTHLSARKMKTLLEREETGFYLPNRDLHLRQVTESCRACAQINAGKIKFGPDVRARGRRPGTHWEVDFTEIKPGMYGYKYLLVFIDTFSGWAEAYPAKHETAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVATLLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSKDWVLLLPLVLYRVRNTPGPHGLTPFEILYGAPPPMAHFFDTDISSFATSPTMQAHLRALQLVQEEIQRPLAAAYREKLETPVVPHPFKPGDSVWVRRHQTKNLEPRWKGPHIVLLTTPTALKVDGVAAWIHASHVKAAGPTTNQDLSDSPSSDDPSRWKVQRTQNPLKIRLSRGT

Annotated regions:
phrase: CAYCKEKGHWVRDCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: WGTEQQLAFEDIKKALLSSPALGLPDITKPFELFIDENSGFAKGVLVQKLGPWKRPVAYLSKKLDTVASGWPPCLRMVAAIAILVKDAGKLTLGQPLT
type: DOMAIN
name: RT_RNaseH_2
description: Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain

phrase: FLVDTGAQHSV
type: ACTIVE_SITE
name: Aspartic_peptidase_AS
description: Aspartic peptidase, active site

phrase: QCAYCKEKGHWVRDCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: EPRITLKIGGQPVTFLVDTGAQHSVLTRPDGPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTHSFLYVPECPYPLLGRDLLTKLKAQI
type: DOMAIN
name: Retropepsins
description: Retropepsins

phrase: SDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYN
type: DOMAIN
name: Gag_P30
description: Core shell protein Gag P30

phrase: YDDSDLDLVQKLEAHYEPKRGTWEYRGKTIMPEKYAKELISHLHKLTHLSARKMKTLLEREETGFYLPNRDLHLRQVTESCRACAQINAG
type: DOMAIN
name: Gag-pol_Znf-H3C2
description: Gag-Pol polyprotein, Zinc-finger like domain

phrase: VKKPGTEDYRPVQDLREVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGY
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: RGRRPGTHWEVDFTEIKPGMYGYKYLLVFIDTFSGWAEAYPAKHETAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVATLLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSKDWVLLLPLVLYRVRNTPGPHGLTPFEILYGA
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: GQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWVRPFLPPPKPPTPLPQ
type: DOMAIN
name: G_retro_matrix
description: Gamma-retroviral matrix protein

phrase: QCAYCKEKGHWVRDCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERRENPAEE
type: DOMAIN
name: Gag_p12
description: Gag polyprotein, inner coat protein p12

phrase: HPFKPGDSVWVRRHQTKNLEPRWKGPHIVLLTTPTALKVDGVAAWIHASHVKAA
type: DOMAIN
name: MLVIN_C
description: Murine leukemia virus integrase, C-terminal

phrase: RRPGTHWEVDFTEIKPGMYGYKYLLVFIDTFSGWAEAYPAKHETAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVATLLGINWKLHCAYR
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: LDQGILKPCQSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGYS
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: PDADLTWYTDGSSFIRNGEREAGAAVTTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKLTVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGHQKGDSPQAKGNRLADDTAKKAA
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: DLTWYTDGSSFIRNGEREAGAAVTTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKLTVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGHQKGDSPQAKGNRLADDTAKKA
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: VTFLVDTGAQHSVLTRPDGPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTHSFLYVPECPYPLLGRD
type: DOMAIN
name: Peptidase_A2_cat
description: Peptidase A2A, retrovirus, catalytic