Protein sequence:
MGKTYSSPINPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETPAREAPPSAPLAEDPQKPPPYPEQAQEASQCLPILHPHGAPAAHRPWQMKDLQAIKQEVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQYLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRIQANNPNQQGLRKEYQNLWLSAFSALPGNTKDPTWAAILQGPEEPFGSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGQTNSPLGEMLRACQTWTPRDKNKILMVQPKKTPPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDCPQLKTDTRDSEDLLLDLPCEAPNVRERKNLLRGGGLASPRTILPLIPLSQQKQPTLHIQVSFSNTPPVSVQALLDTGADITVLPACLCPPDSNLQDTTVLGAGGPSTNKFKILPCPVHIHLPFRRQPVTLTACLIDINNQWTILGRDALQQCQSSLYLADQPSKVLPVLAPKLIGLEHLPPPPEVSQFPLNPERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSVTRDLASPSPGPPDLTSLPQGLPHLRTIDLTDAFFQIPLPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSLIIQYMDDILLASPAPGELAALTDKVTNALTKEGLPLSPEKTQATPGPIHFLGQVISQDCITYETLPSINVKSTWSLAELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPRDTIKLTSIQVQALRTIQKALTLNCRSRLVNQLPILALIMLRPTGTTAVLFQTKQKWPLVWLHTPHPATSLRPWGQLLANAVIILDKYSLQHYGQVCKSFHHNISNQALTYYLHTSDQSSVAILLQHSHRFHNLGAQPSGPWRSLLQMPQIFQNIDVLRPPFTISPVVINHAPCLFSDGSASKAAFIIWDRQVIHQQVLSLPSTCSAQAGELFGLLAGLQKSQPWVALNIFLDSKFLIGHLRRMALGAFPGPSTQCELHTQLLPLLQGKTVYVHHVRSHTLLQDPISRLNEATDALMLAPLLPLDPTTLHQLTHCNPYALRNHGATASEAHAIVQACHTCKVINPQGRLPQGYIRRGHAPNDIWQGDVTHLQYKRYKYCLLVWVDTYSGAVSVSCRRKETGSDCVASLLVAISILGKPQNINTDNGAAYLSQEFQQFCNSLAIKHSTHIPYNPTSSGLVERTNGILKTLISKYLLDNHHLPLETAVSKSLWTINHLNVLPSCQKTRWQLHQAQPLPPVPEDTLPPHTSPKWYYYKIPGLTNSRWSGPVQSLKEAAGAALIPVGGSYLWIPWRLLKRGICPRPESSAAVDPKTRDHQLHG

Annotated regions:
phrase: QKQPTLHIQVSFSNTPPVSVQALLDTGADITVLPACLCPPDSNLQDTTVLGAGGPSTNKFKILPCPVHIHLPFRRQPVTLTACLIDINNQWTILGRDALQQCQSS
type: DOMAIN
name: Retropepsins
description: Retropepsins

phrase: TTLHQLTHCNPYALRNHGATASEAHAIVQACHTC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: ALLDTGADITV
type: ACTIVE_SITE
name: Aspartic_peptidase_AS
description: Aspartic peptidase, active site

phrase: LEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSVTRDLASPSPGPPDLTSLPQGLPHLRTIDLTDAFFQIPLPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSLIIQYMDDILLASPAPGELAALTDKVTNALTKEGLPLSPEKTQATPGPIHFLGQV
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: VQALLDTGADITVLPACLCPPDSNLQDTTVLGAGGPSTNKFKILPCPVHIHLPFRRQPVTLTACLIDINNQWTILGRD
type: DOMAIN
name: Peptidase_A2_cat
description: Peptidase A2A, retrovirus, catalytic

phrase: PCFRCGQVGHWSRDCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: HAPNDIWQGDVTHLQYKRYKYCLLVWVDTYSGAVSVSCRRKETGSDCVASLLVAISILGKPQNINTDNGAAYLSQEFQQFCNSLAIKHSTHIPYN
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: MGKTYSSPINPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQET
type: DOMAIN
name: D_retro_matrix
description: Delta-retroviral matrix protein

phrase: KWYYYKIPGLTNSRWSGPVQSLKEAAGAALIPVGGSYLWIPWRLLKRGI
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: CFRCGQVGHWSRDCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: PCFRCGQVGHWSRDCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: PCPVCQDPTHWKRDCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: YKIPGLTNSRWSGPVQSLKEAAGAALIPVGGSYLWIPWRLLK
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: CLFSDGSASKAAFIIWDRQVIHQQVLSLPSTCSAQAGELFGLLAGLQKSQPWVALNIFLDSKFLIGHLRRMALGAFPGPSTQCELHTQLLPLLQGKTVYVHHVRSHTLLQDPISRLNEATDA
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: VKKPNGKWRFIHDLRATNSVTRDLASPSPGPPDLTSLPQGLPHLRTIDLTDAFFQIPLPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSLIIQYMDDILLASPAPGELAALTDKVTNALTKEGLPLSPEKTQATPGPIHFLGQ
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: INHAPCLFSDGSASKAAFIIWDRQVIHQQVLSLPSTCSAQAGELFGLLAGLQKSQPWVALNIFLDSKFLIGHLRRMALGAFPGPSTQCELHTQLLPLLQGKTVYVHHVRSHTLLQDPISRLNEATDALMLAPL
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: TKDPTWAAILQGPEEPFGSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGQTNSPLGEMLR
type: DOMAIN
name: Gag_p24_C
description: Retroviral nucleocapsid Gag protein p24, C-terminal domain

phrase: RGHAPNDIWQGDVTHLQYKRYKYCLLVWVDTYSGAVSVSCRRKETGSDCVASLLVAISILGKPQNINTDNGAAYLSQEFQQFCNSLAIKHSTHIPYNPTSSGLVERTNGILKTLISKYLLDNHHLPLETAVSKSLWTINHLNVLPSCQKTRWQLHQAQPLPPVPEDTLP
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core