nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MFDLEYQLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEYIITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSKYFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKSEYREIIDDVIKLLSGKHLDIVENFKLNMERAAENLEFEKAAMLRDKINIIEKIGEKQKIILNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENFKLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSDYRRFKINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMDGGKGQINIALEVLNTFNIDIPVCGMVKDNKHRTRGLIYNGEEIIINKYGSVMKFITRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEELLSIPSMDKKSAECVLEFFK

Annotated regions:
phrase: LDIVENFKLNMERAAENLEFEKAAMLRDKINIIEK
type: DOMAIN
name: UVR_dom
description: UVR domain

phrase: MERAAENLEFEKAAMLRDKINIIE
type: DOMAIN
name: UVR_dom
description: UVR domain

phrase: DKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEYIITDSEIEALILECNLIKKYRPKYN
type: DOMAIN
name: GIY-YIG_endonuc
description: GIY-YIG endonuclease

phrase: LPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEYIITDSEIEALILECNLIKKYRPKYN
type: DOMAIN
name: GIY-YIG_UvrC_Cho
description: UvrC/Cho-like, GIY-YIG domain

phrase: NILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSDYRRFKINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMDGGKGQINIALEVLNTFNIDIPVCGMVKDNKHRTRGLIYNGEEIIINKYGSVMKFITRVQDEVHRFA
type: DOMAIN
name: UvrC_RNase_H_dom
description: UvrC, RNAse H endonuclease domain

phrase: KPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEYIITDSEIEALILECNLIKKYRPKYNILLK
type: DOMAIN
name: GIY-YIG_endonuc
description: GIY-YIG endonuclease

phrase: IPNIGEKRKKDLLFNFKSIDNIKKATYEELLSIPSMDKKSAECVLEFF
type: DOMAIN
name: DisA/LigA_HHH
description: DisA/LigA, helix-hairpin-helix motif

phrase: CFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENFKLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSDYRRFKINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMDGGKGQINIALEV
type: DOMAIN
name: UvrC_RNase_H_dom
description: UvrC, RNAse H endonuclease domain

phrase: PGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEYIITDSEIEALILECNLIKKYRPKY
type: DOMAIN
name: GIY-YIG_endonuc
description: GIY-YIG endonuclease
Protein sequence:
MTASKARIVFMGTPDFAVASLDALIGEGYNVVGVVTIPDKSIGKHQSIPQFSPIKQYALSHEIPLLQPKKLKDPDFLKSLKAWNTDLQVVVSFRLLPEVVWNMPSLGTFNLHASLLPQYRGAAPINWAIINGEKETGVTTFFLDYEIDTGKIIAQECIPIKETDNAGTIHDELMYLGAKLVVKTTNDILSGTVKLISQDETNLGKQKLKIAPKIFREVCKIDWNKTTREIHNFIRGLSPYPGAWTELTCVKGMTFPFKIFETEKADCHDYSLPVGTIVSDKKVYIDVRTKDGFIRLRNVQLAGKKRMPVTDFLKGNAYLLSLHF

Annotated regions:
phrase: KIFREVCKIDWNKTTREIHNFIRGLSPYPGAWTELTCVKGMTFPFKIFETEKADCHDYSLPVGTIVSDKKVYIDVRTKDGFIRLRNVQLAGKKRMPVTDFLKG
type: DOMAIN
name: Formyl_trans_C
description: Formyl transferase, C-terminal

phrase: EVCKIDWNKTTREIHNFIRGLSPYPGAWTELTCVKGMTFPFKIFETEKADCHDYSLPVGTIVSDKKVYIDVRTKDGFIRLRNVQLAGKKRMP
type: DOMAIN
name: Met-tRNA-FMT_C
description: Methionyl-tRNA formyltransferase, C-terminal domain

phrase: RIVFMGTPDFAVASLDALIGEGYNVVGVVTIPDKSIGKHQSIPQFSPIKQYALSHEIPLLQPKKLKDPDFLKSLKAWNTDLQVVVSFRLLPEVVWNMPSLGTFNLHASLLPQYRGAAPINWAIINGEKETGVTTFFLDYEIDTGKIIAQECIPIKETDNAGTIHDELMYLGAKLVVKTTNDILSGTVKLISQDETNLGKQKLKIAPK
type: DOMAIN
name: Met-tRNA-FMT_N
description: Methionyl-tRNA formyltransferase, N-terminal domain

phrase: RIVFMGTPDFAVASLDALIGEGYNVVGVVTIPDKSIGKHQSIPQFSPIKQYALSHEIPLLQPKKLKDPDFLKSLKAWNTDLQVVVSFRLLPEVVWNMPSLGTFNLHASLLPQYRGAAPINWAIINGEKETGVTTFFLDYEIDTGKIIAQECIPIKETDNAGTIHDELMYLGAKLVV
type: DOMAIN
name: Formyl_transf_N
description: Formyl transferase, N-terminal
Protein sequence:
MLQPKRTKFRKMHKGRNRGLAAGADVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

Annotated regions:
phrase: AGADVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTF
type: DOMAIN
name: Ribosomal_uL16_dom
description: Large ribosomal subunit protein uL16 domain

phrase: RMGKGKGNVEY
type: CONSERVED_SITE
name: Ribosomal_uL16_CS
description: Large ribosomal subunit protein uL16, conserved site

phrase: KRQGKIWIRVF
type: CONSERVED_SITE
name: Ribosomal_uL16_CS
description: Large ribosomal subunit protein uL16, conserved site
Protein sequence:
MKTAHWADFYAEKIKKEKGPKNIYTVASGITPSGTVHIGNFREVISVDLVARALKDSGSQVRFIYSWDNYDVFRKVPKNMPEQELLTTYLRQAITRVPDTRGYKTSYARANEIEFEKYLPIVGINPEFIDQSKKYTNSTYASQIKFALNHKKELAEALNEYRTSKLEENWYPISIFCTKCNRDTTTVNNYDNHYSVKYSCECGNQESLDIRTTWAIKLPWRIDWPMRWKYEKVDFEPAGKDHHSSGGSFDTSKNIVKIFQGSPPVTFQYDFISIKGRGGKISSSLGDVISLKDVLEIYTPEVTRFLFAATKPNTEFSISFDLDVIKIYEDYDRFERIYYGVEDIKEEKKRSFKRIYELSQPYMPSKRIPYQIGFRHLSVICQIFENNINKILNYLKNVQDDQKDKLINKIKCVINWIKDFAPEDFKFLLRSKFDNIEILKEDNKKAISELLDSLKKNFEVATEQDIQNEIYKISRENNIEPALFFKQIYKILIDKEKGPKLAGFIKIIGIDRFEKIVSKYI

Annotated regions:
phrase: PSGTVHIGN
type: CONSERVED_SITE
name: aa-tRNA-synth_I_CS
description: Aminoacyl-tRNA synthetase, class I, conserved site
Protein sequence:
MAKQAIKRAKILAVKNNNKIGVLLINLGTPDEPSVPAVRRYLRQFLSDPKVIDVPSLVRWIIVHLCILPFRPKRSAKLYQKIWMPEGSPLLVYSEMLRERVGETLGDDFCVALGMRYGKPSIETALKKLQEAQCRQLIVLPLFPQYSTSTTASALEEVRAKNSFKEMTVIDRFFEEPHYIDSMTTLIHENLNEFQPDYFLFSYHGLPERHLVKSGCQLAICNRKNNCSPISSSNENCYRAQCFETSRLIAKKLNLTDQQYGVAFQSRLGRAKWIEPYTDKYLIELSKKGIKKLMVVCPSFPVDCLETLEEIGIRAQSQWQRLGGETLKLIPSLNAHPQWVNAIAKMAKKSLQLF

Annotated regions:
phrase: DSMTTLIHENLNEFQPDYFLFSYHGLPERHLVKSGCQLAICNRKNNCSPISSSNENCYRAQCFETSRLIAKKLNLTDQQYGVAFQSRLGRAKWIEPYTDKYLIELSKKGIKKLMVVCPSFPVDCLETLEEIGIRAQSQWQRLGGETLKLIPSL
type: DOMAIN
name: Ferrochelatase_C
description: Ferrochelatase, C-terminal

phrase: FLFSYHGLPERHLVKSGCQL
type: ACTIVE_SITE
name: Ferrochelatase_AS
description: Ferrochelatase, active site

phrase: IGVLLINLGTPDEPSVPAVRRYLRQFLSDPKVIDVPSLVRWIIVHLCILPFRPKRSAKLYQKIWMPEGSPLLVYSEMLRERVGETLGDDFCVALGMRYGKPSIETALKKLQEAQCRQLIVLPLFPQYSTSTTASALEEVRAKNSFKEMTVIDRFFE
type: DOMAIN
name: Ferrochelatase_N
description: Ferrochelatase, N-terminal
Protein sequence:
MTNIRKSHPLIKIINHSFIDLPTPSNISAWWNFGSLLGMCLALQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWLIRYTHANGASMFFIFLYFHIGRGIYYGSYTYTETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTLVEWIWGGFSVDKATLTRFFAFHFVLPFIVTAMVMIHLLFLHETGSNNPSGVNSDSDKIPFHPYYTIKDILGLLFMFITLTMLILFSPDLLVDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVFSILILVLLPIIHTSKQRSMSFRPFSQYLLWILVANLMILTWIGSQPVEYPFITIGQLASISYFCIILIIMPATSYMENKMLKW

Annotated regions:
phrase: PLIKIINHSFIDLPTPSNISAWWNFGSLLGMCLALQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWLIRYTHANGASMFFIFLYFHIGRGIYYGSYTYTETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTLVEWIWGGFSVDKATLTRFFAFHFVLPFIVTAMVMIHLLFLHETGS
type: DOMAIN
name: Cytochrome_b_N_euk/bac
description: Cytochrome b/b6, N-terminal domain, eukaryotic/bacterial

phrase: PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVFSILILVLLPIIHTSKQRSMSFRPFSQYLLWILVANLMILTWIGSQPVEYPFITIGQLASISY
type: DOMAIN
name: Cyt_b/b6_C
description: Cytochrome b/b6, C-terminal

phrase: GVNSDSDKIPFHPYYTIKDILGLLFMFITLTMLILFSPDLLVDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVFSILILVLLPIIHTSKQRSMSFRPFSQYLLWILVANLMILTWIGSQPVEYPFITIGQLASISYFCIILIIMPATSYMENKMLK
type: DOMAIN
name: Cyt_b/b6_C
description: Cytochrome b/b6, C-terminal

phrase: NPSGVNSDSDKIPFHPYYTIKDILGLLFMFITLTMLILFSPDLLVDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVFSILILVLLPIIHTSKQRSMSFRPFSQYLLWILVANLMILTWIGSQPVEYPFITIGQL
type: DOMAIN
name: Cytochrome_b_C_euk/bac
description: Cytochrome b/b6, C-terminal domain, eukaryotic/bacterial

phrase: MTNIRKSHPLIKIINHSFIDLPTPSNISAWWNFGSLLGMCLALQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWLIRYTHANGASMFFIFLYFHIGRGIYYGSYTYTETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTLVEWIWGGFSVDKATLTRFFAFHFVLPFIVTAMVMIHLLFLHETGSNNP
type: DOMAIN
name: Cyt_b/b6_N
description: Cytochrome b/b6, N-terminal domain

phrase: IDLPTPSNISAWWNFGSLLGMCLALQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWLIRYTHANGASMFFIFLYFHIGRGIYYGSYTYTETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTLVEWIWGGFSVDKATLTRFFAFHFVLPFIVTAMVMIHLLFLHET
type: DOMAIN
name: Cyt_b/b6_N
description: Cytochrome b/b6, N-terminal domain
Protein sequence:
MTCVCVLTLCRQVLGTLVGAVELEEERRLRVQCQSLLSVAKNLFSHLDDVDELLKEIMSQARNLTKAERCSLFLHDKQRKCLVAKVFDGSSSDSGQWSTTDRRQLDIPLDRGILGHVATTGHLLNIADAYSHPLFYKDIDIATGFKTRNILCFPIKDGDDVLGVAELCNKTSAPCFTRVDEESAMSFSIYCGISLVKGLMYKKVQDAQHRSRLSNELMMYHMKVSNEETLKLLHEDNMHNIDKNFCEFQFVPRSMEELQTPAAVVAVFHDLGLMERWSINQETLSRFVLMVRKGYRDPPYHNWMHAFSVFHFTYVLIKRLRLVQQEYLTDLEALALLVSSLCHDIDHRGTTNSFQLASNSLLAALYSSEGSVMERHHFAQTMCIINTLGCNIFENLSSGDYTRCLDLMQDIILATDVSHHLSIFRKLEDLATSGFDKNRADHHQLLLFLMMTTADLSDQTKDWNSSKNAALLVYHEFFSQGDLEKKMGNRPDEMMDREKACIPTLQIQFIDDVALPVYSLLAQLFPELSVLVDTVSSNRKKWVITLEDGHVVSPMETLTNDND

Annotated regions:
phrase: DVDELLKEIMSQARNLTKAERCSLFLHDKQRKCLVAKVFDGSSSDSGQWSTTDRRQLDIPLDRGILGHVATTGHLLNIADAYSHPLFYKDIDIATGFKTRNILCFPIKDGDDVLGVAELCNKTSAPCFTRVDEESAMSFSIYCGIS
type: DOMAIN
name: GAF
description: GAF domain

phrase: SNEETLKLLHEDNMHNIDKNFCEFQFVPRSMEELQTPAAVVAVFHDLGLMERWSINQETLSRFVLMVRKGYRDPPYHNWMHAFSVFHFTYVLIKRLRLVQQEYLTDLEALALLVSSLCHDIDHRGTTNSFQLASNSLLAALYSSEGSVMERHHFAQTMCIINTLGCNIFENLSSGDYTRCLDLMQDIILATDVSHHLSIFRKLEDLATSGFDKNRADHHQLLLFLMMTTADLSDQTKDWNSSKNAALLVYHEFFSQGDLEKKMGNRPDEMMDREKACIPTLQIQFIDDVALPVYSLLAQLFPELSVLVDTVSSNRKKWVITLED
type: DOMAIN
name: PDEase_catalytic_dom
description: 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain

phrase: DVDELLKEIMSQARNLTKAERCSLFLHDKQRKCLVAKVFDGSSSDSGQWSTTDRRQLDIPLDRGILGHVATTGHLLNIADAYSHPLFYKDIDIATGFKTRNILCFPIKDGDDVLGVAELCNKTSAPCFTRVDEESAMSFSIYCGISLVKGLMYKKV
type: DOMAIN
name: GAF
description: GAF domain

phrase: YHNWMHAFSVFHFTYVLIKRLRLVQQEYLTDLEALALLVSSLCHDIDHRGTTNSFQLASNSLLAALYSSEGSVMERHHFAQTMCIINTLGCNIFENLSSGDYTRCLDLMQDIILATDVSHHLSIFRKLEDLATSGFDKNRADHHQLLLFLMMTTADLSDQTKDWNSSKNAALLVYHEFFSQGDLEKKMGNRPDEMMDREKACIPTLQIQFIDDVALPVYSLLAQLFPELSVLVD
type: DOMAIN
name: PDEase_catalytic_dom
description: 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain

phrase: YHNWMHAFSVFHFTYVLIKRLRLVQQEYLTDLEALALLVSSLCHDIDHRGTTNSFQLASNSLLAALYSSEGSVMERHHFAQTMCIINTLGCNIFENLSSGDYTRCLDLMQDIILATDVSHHLSIFRKLEDLATSGFDKNRADHHQLLLFLMMTTADLSDQTKDWNSSKNAALLVYHEF
type: DOMAIN
name: HD/PDEase_dom
description: HD/PDEase domain

phrase: HDIDHRGTTNS
type: CONSERVED_SITE
name: PDEase_CS
description: 3'5'-cyclic nucleotide phosphodiesterase, conserved site

phrase: PPYHNWMHAFSVFHFTYVLIKRLRLVQQEYLTDLEALALLVSSLCHDIDHRGTTNSFQLASNSLLAALYSSEGSVMERHHFAQTMCIINTLGCNIFENLSSGDYTRCLDLMQDIILATDVSHHLSIFRKLEDLATSGFDKNRADHHQLLLFLMMTTADLSDQTKDWNSSKN
type: DOMAIN
name: HD/PDEase_dom
description: HD/PDEase domain
Protein sequence:
MKFLRSVYAFCSSWVGTIIIVLLVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPVMPDFKNNGHLIEGDRPKRGEVVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESGNDKDYISKHYPNALTKEFMGKIFVLNPYKSKHPGIHYQKDNETFHLMEQLATQGAEANISMQLIQMEGEKVFYKKINHDEFFMIGDNRDNSSDSRFWGSVAYKNIVGSPWFVYFSLSLKNSLEVDAENNPKKRYLVRWERMFKSVEGLEKIIKKEKATH

Annotated regions:
phrase: FFMIGDNRDNSSD
type: CONSERVED_SITE
name: Pept_S26A_signal_pept_1_CS
description: Peptidase S26A, signal peptidase I, conserved site

phrase: SSWVGTIIIVLLVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPVMPDFKNNGHLIEGDRPKRGEVVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESGNDKDYISKHYPNALTKEFMGKIFVLNPYKSKHPGIHYQKDNETFHLMEQLATQGAEANISMQLIQMEGEKVFYKKINHDEFFMIGDNRDNSSDSRFWGSVAYKNIVGSPWFV
type: DOMAIN
name: Peptidase_S26
description: Peptidase S26

phrase: QAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPVMPDFKNNGHLIEGDRPKRGEVVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESGNDKDYISKHYPNALTKEFMGKIFVLNPYKSKHPGIHYQKDNETFHLMEQLATQGAEANISMQLIQMEGEKVFYKKINHDEFFMIGDNRDNSSDSRFWGSVAYKNIV
type: DOMAIN
name: Peptidase_S26
description: Peptidase S26
Protein sequence:
METELMRIGISLPDILLGEFDEIIGKRGYSSRSEGIRDAIRSYISYYEWMNDIKGHRVGTIAFVYDHTKRGLSNSLTDIQHHYSHLIKSSIHVHLDHKECFEVVVLNGDGKEIAELSETMMVLKGVKFSKLTTVASNENI

Annotated regions:
phrase: VGTIAFVYDHTKRGLSNSLTDIQHHYSHLIKSSIHVHLDHKECFEVVVLNGDGKEIAELSETMMVLKGVKFSKLTT
type: DOMAIN
name: TF_NikR_Ni-bd_C
description: Transcription factor, NikR, nickel binding C-terminal

phrase: RIGISLPDILLGEFDEIIGKRGYSSRSEGIRDAIRSY
type: DOMAIN
name: CopG
description: Ribbon-helix-helix protein, CopG
Protein sequence:
TEGPYFYIPMSNATGIVRSPYEYPQYYLVYPAAYAVLGAYMFFLIIFGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVIGGFTTTIYTSMHGYFVLGRLGCNLEGFSATLGGMIGLWSLVVLAIERWVVVCKPMSNFRFGENHAIMGVTLTWVMGLACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNDSYVLYMFVCHFLIPLVVIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGFLVCWLPYASVAWYIFTHQGSEFGPLFMTIPAFFAKSSSIYNPVIYICMNKQFRQCMLTTLFCGKNPFEEEEGASSTKTEASSASSSSVSPA

Annotated regions:
phrase: VNFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVIGGFTTTIYTSMHGYFVLGRLGCNLEGFSATLGGMIGLWSLVVLAIERWVVVCKPMSNFRFGENHAIMGVTLTWVMGLACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNDSYVLYMFVCHFLIPLVVIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGFLVCWLPYASVAWYIFTHQGSEFGPLFMTIPAFFAKSSSIYNPVI
type: DOMAIN
name: GPCR_Rhodpsn_7TM
description: GPCR, rhodopsin-like, 7TM

phrase: TEGPYFYIPMSNATGIVRSPYEYPQYYLVYPAA
type: DOMAIN
name: Rhodopsin_N
description: Rhodopsin, N-terminal

phrase: IPAFFAKSSSIYNPVI
type: BINDING_SITE
name: Retinal_BS
description: Visual pigments (opsins) retinal binding site
Protein sequence:
MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDLYGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKTAERLVVELKDKLVALARAAGPARAGAEADVLDQLRTALLNLGYRPPQAEGVAEALRDSAEGRPLDELLREALKRLRG

Annotated regions:
phrase: ARLTKVQGIGKKTAERLVV
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: RALIDVKGVGPRAAQNILS
type: DOMAIN
name: Hlx-hairpin-Hlx_DNA-bd_motif
description: Helix-hairpin-helix DNA-binding motif, class 1

phrase: DVLDQLRTALLNLGYRPPQAEGVAEALRDSAEGRPLDELLREALKR
type: DOMAIN
name: RuvA_C
description: Holliday junction DNA helicase RuvA, C-terminal

phrase: MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDLY
type: DOMAIN
name: DNA_helicase_Holl-junc_RuvA_I
description: DNA helicase, Holliday junction RuvA type, domain I, bacterial

phrase: DVLDQLRTALLNLGYRPPQAEGVAEALRDSAEGRPLDELLREAL
type: DOMAIN
name: RuvA_C
description: Holliday junction DNA helicase RuvA, C-terminal
Protein sequence:
MIDQKVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELGVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQSDLAGIGLDVAPQEHVIRLATLTKNSGLDGVVCSAQESSLLKNELGKEFKLVTPGIRPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQAINTSLTK

Annotated regions:
phrase: VFLDLKFHDIPNT
type: ACTIVE_SITE
name: OMPdecase_AS
description: Orotidine 5'-phosphate decarboxylase, active site

phrase: KVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELGVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQSDLAGIGLDVAPQEHVIRLATLTKNSGLDGVVCSAQESSLLKNELGKEFKLVTPGIRPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQA
type: DOMAIN
name: OMPdeCOase_dom
description: Orotidine 5'-phosphate decarboxylase domain

phrase: KVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELGVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQSDLAGIGLDVAPQEHVIRLATLTKNSGLDGVVCSAQESSLLKNELGKEFKLVTPGIRPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQA
type: DOMAIN
name: OMPdeCOase_dom
description: Orotidine 5'-phosphate decarboxylase domain
Protein sequence:
MEKLTTLTGVGVPLRRSNVDTDQIIPAVFLKRVTKSGFDDALFYAWRRDPNFVLNKPEYAGKGQILVAGPEFGIGSSREHAVWALHDYGFRVVIAPSFADIFYGNTAKNGVLAAIMPQESVELLWKLLEEEPGREMTVSLETRTVTCGDVTLPFEVNDYVRWRLMNGYDDIDLTLQHEDDIAAYEKMRAEKFPFKPKTIPAKHWPEEKIESAREPDDDWTGPLADRGII

Annotated regions:
phrase: LRRSNVDTDQIIPAVFLKRVTKSGFDDALFYAWRRDPNFVLNKPEYAGKGQILVAGPEFGIGSSREHAVWALHDYGFRVVIAPSFADIFYGNTAKNGVLAAIMPQESVELLWKLLEEEPGREMTVS
type: DOMAIN
name: IPMI_Swivel
description: 3-isopropylmalate dehydratase, swivel domain

phrase: MEKLTTLTGVGVPLRRSNVDTDQIIPAVFLKRVTKSGFDDALFYAWRRDPNFVLNKPEYAGKGQILVAGPEFGIGSSREHAVWALHDYGFRVVIAPSFADIFYGNTAKNGVLA
type: DOMAIN
name: AconitaseA/IPMdHydase_ssu_swvl
description: Aconitase A/isopropylmalate dehydratase small subunit, swivel domain
Protein sequence:
MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALKDAVN

Annotated regions:
phrase: GFGTFAVKERAARTGRNPQ
type: CONSERVED_SITE
name: Histone-like_DNA-bd_CS
description: Histone-like DNA-binding protein, conserved site
Protein sequence:
MKKTAFILLLFIALTLTTSPLVNGSEKSEEINEKDLRKKSELQRNALSNLRQIYYYNEKAITENKESDDQFLENTLLFKGFFTGHPWYNDLLVDLGSKDATNKYKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEKKVPINLWIDGKQTTVPIDKVKTSKKEVTVQELDLQARHYLHGKFGLYNSDSFGGKVQRGLIVFHSSEGSTVSYDLFDAQGQYPDTLLRIYRDNKTINSENLHIDLYLYTT

Annotated regions:
phrase: KKEVTVQELDLQARHYLHGKFGL
type: CONSERVED_SITE
name: Staph/Strept_toxin_CS
description: Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site

phrase: KKVPINLWIDGKQTTVPIDKVKTSKKEVTVQELDLQARHYLHGKFGLYNSDSFGGKVQRGLIVFHSSEGSTVSYDLFDAQGQYPDTLLRIYRDNKTINSENLHIDLY
type: DOMAIN
name: Toxin_b-grasp_Staph/Strep
description: Staphylococcal/Streptococcal toxin, beta-grasp domain

phrase: YGGVTLHDN
type: CONSERVED_SITE
name: Staph/Strept_toxin_CS
description: Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site

phrase: NLRQIYYYNEKAITENKESDDQFLENTLLFKGFFTGHPWYNDLLVDLGSKDATNKYKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVT
type: DOMAIN
name: Staph_tox_OB
description: Staphylococcal/Streptococcal toxin, OB-fold
Protein sequence:
MDQSNRYANLNLKESDLIAGGRHVLCAYIMKPKAGFGNFVETAAHFAAESSTGTNVEVSTTDDFTRGVDALVYEVDEAKELMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVEYAKMHDFYVPPAYLRLFDGPSTTIKDLWRVLGRPVVDGGFIVGTIIKPKLGLRPQPFADACYDFWLGGDFIKNDEPQGNQVFAPFKDTVRAVNDAMRRAQDATGQPKLFSFNITADDHYEMLARGEYILETFGENADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASGIHVGTMGYGKMEGEASDRDSAFMITQDSAEGPYFKQEWLGMNPTTPIISGGMNALRMPGFFANLGHSNLIMTAGGGAFGHIDGGAAGARSLRQAEQCWKQGADPVAFAKDHREFARAFESFPNDADKLYPNWRNMLKLAAA

Annotated regions:
phrase: LKESDLIAGGRHVLCAYIMKPKAGFGNFVETAAHFAAESSTGTNVEVSTTDDFTRGVDALVYEVDEAKELMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVEYAKMHDFYVPPA
type: DOMAIN
name: RuBisCO_lsu_fd_N
description: Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal

phrase: IKDLWRVLGRPVVDGGFIVGTIIKPKLGLRPQPFADACYDFWLGGDFIKNDEPQGNQVFAPFKDTVRAVNDAMRRAQDATGQPKLFSFNITADDHYEMLARGEYILETFGENADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASGIHVGTMGYGKMEGEASDRDSAFMITQDSAEGPYFKQEWLGMNPTTPIISGGMNALRMPGFFANLGHSNLIMTAGGGAFGHIDGGAAGARSLRQAEQCWKQGADPVAFAKDHREFARAFES
type: DOMAIN
name: RuBisCO_lsu_C
description: Ribulose bisphosphate carboxylase, large subunit, C-terminal

phrase: GGDFIKND
type: ACTIVE_SITE
name: RuBisCo_large_chain_AS
description: Ribulose bisphosphate carboxylase, large chain, active site
Protein sequence:
MNTTVSNQTPHIRIFDTTLRDGEQSPGCSMTPQQKLVMARALDALGVDIIETGFPASSYSDREAVAMMGRELRRPTLAVLSRCLQADIEISARALEAAANPRLHVFLSTSPLHREHKLRMSREQVLESVHKHVTLARGYIDDIEFSAEDATRTEEDFLAEVTRVAIAAGATTINLPDTVGFTTPEEIRGMFSRLIASVEGAEKVIFSTHCHNDLGLAAANSLAAIEGGARQVECTINGIGERAGNCALEEITMALKVRGAFYNLDTAINTPRIVSTSQLLQRLVGMPVQRNKAVVGGNAFAHESGIHQHGMLRHRGTYEIMRPEDVGWESSQMVLGRHSGRAAVEQRLRALGYLLEEDEAKLVFEQFKALCEKQRVVTDADLQALMQDATVQEGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGNGPVDALFGALASATGVKLELDSYQVHSVGIGADARGEASLSVRHDGVEYEGTGTSKDIIEASALAWLDVANRLLRQRERGVVAGKTAAVA

Annotated regions:
phrase: IRIFDTTLRDGEQSPGCSMTPQQKLVMARALDALGVDIIETGFPASSYSDREAVAMMGRELRRPTLAVLSRCLQADIEISARALEAAANPRLHVFLSTSPLHREHKLRMSREQVLESVHKHVTLARGYIDDIEFSAEDATRTEEDFLAEVTRVAIAAGATTINLPDTVGFTTPEEIRGMFSRLIASVEGAEKVIFSTHCHNDLGLAAANSLAAIEGGARQVECTINGIGERAGNCALEEITMALKVRGAFYNLDTAINTPRI
type: DOMAIN
name: PYR_CT
description: Pyruvate carboxyltransferase

phrase: FSTHCHNDLGLAA
type: CONSERVED_SITE
name: AIPM/Hcit_synth_CS
description: Alpha-isopropylmalate/homocitrate synthase, conserved site

phrase: IRIFDTTLRDGEQSPGCSMTPQQKLVMARALDALGVDIIETGFPASSYSDREAVAMMGRELRRPTLAVLSRCLQADIEISARALEAAANPRLHVFLSTSPLHREHKLRMSREQVLESVHKHVTLARGYIDDIEFSAEDATRTEEDFLAEVTRVAIAAGATTINLPDTVGFTTPEEIRGMFSRLIASVEGAEKVIFSTHCHNDLGLAAANSLAAIEGGARQVECTINGIGERAGNCALEEITMALKVRGAFYNLDTAINTPRIVSTSQ
type: DOMAIN
name: PYR_CT
description: Pyruvate carboxyltransferase

phrase: VVTDADLQALMQDATVQEGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGNGPVDALFGALASATGVKLELDSYQVHSVGIGADARGEASLSVRHDGVEYEGTGTSKDIIEASALAWLDVANRL
type: DOMAIN
name: 2-isopropylmalate_synth_dimer
description: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain

phrase: VVGGNAFAHESGIHQHGMLRHRGTYEIMRPEDVGWESSQMVLGRHSGRAAVEQRLRALGYLLEEDEAKLVFEQFKALCEK
type: DOMAIN
name: LeuA/HCS_post-cat
description: 2-isopropylmalate synthase/homocitrate synthase, post-catalytic domain

phrase: VTDADLQALMQDATVQEGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGNGPVDALFGALASATGVKLELDSYQVHSVGIGADARGEASLSVRHDGVEYEGTGTSKDIIEASALAWLDVANRL
type: DOMAIN
name: 2-isopropylmalate_synth_dimer
description: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain

phrase: LRDGEQSPGCSMTPQQ
type: CONSERVED_SITE
name: AIPM/Hcit_synth_CS
description: Alpha-isopropylmalate/homocitrate synthase, conserved site
Protein sequence:
MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECAIYDRSDVAVRKKEGMELTQGLVTGELPPALLPIEEHGMKLLVDIHHGHKTAYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRVM

Annotated regions:
phrase: VRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQ
type: DOMAIN
name: PUA
description: PUA domain

phrase: VRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPS
type: DOMAIN
name: RlmI-like_PUA
description: RlmI-like, PUA domain

phrase: VLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWT
type: DOMAIN
name: RlmI-like_PUA
description: RlmI-like, PUA domain

phrase: DGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECAIYDRSDVAVRKKEGMELTQGLVTGELPPALLPIEEHGMKLLVDIHHGHKTAYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADA
type: DOMAIN
name: SAM-dep_methyl-trfase
description: S-adenosylmethionine-dependent methyltransferase
Protein sequence:
MVGTMWKVIVSLVLLMPGSCDGLFRSLYRSVSMPPKGDSGQPLFLTPYIEAGKIQKGRELSLVSPFLGLNMRSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGFSSMFGLFVEHGPYVVTSNMTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVAQDLYSALIQFFQIFPEYKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLKGIAIGDGYSDPESIIGGYAEFLYQIGLLDEKQKKYFQKQCHECIEHIRKQNWFQAFEILDKLLDGDLTSDPSYFQNVTGCSNYCNFLRCTEPEDQLYYAKFLSLPEVRQAIHVGNRTFNDGTTVEKYLREDTVQSVKPWLTEIMNNYKVLIYNGQLDIIVAAALTEHSLMGMDWKGSQEYKKAEKKVWKIFKSDSEVAGYVRQVGDFHQVIIRGGGHILPYIQPLRAFDMINRFIYGKGWDPYVG

Annotated regions:
phrase: VTGESYA
type: ACTIVE_SITE
name: Ser_caboxypep_ser_AS
description: Serine carboxypeptidase, serine active site