Protein sequence:
MPTTLKSGNRLRVDFTKIPQNIAIPNLLQLQRNSYDSFLMPIENGESGIEKVFRSIFPIHDAQNRITLEYAGCEYGKPRYTVREAMERGLTYSVPLKVKIRLVLWEKDEKTGEKLGVKDIKEQSIFVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESATSSNKLIYTGQIIPDRGSWLYFEYDAKDTLYVRINKRRKVPVTILFRALGYSKQDVIKTFYPLMKVKAEAGKYLMPFNPEEFIGRIEFDIRDTSGNLIIGAGKRLTQKRAKTLKEQGLEWVEYPVEILLDRHLAEPIVDKESGEVILDTLVQLDEGKLKKIHELGIKEFTIANDLAQGVDASIIHSFVADNESLKLLKQTEKIDDDNDLAAIRIYKVMRPGEPVTKDAAKSFVQQLFFDPERYDLTRVGRMKMNHKLDIEVPDYVTVLTHEDIICTVKYLIRVKNGQGHIDDRDHLGNRRIRAIGELLANELHTGLVKMQKAIRDKLTTMSGNLDELMPHDLVNSKMITSTILEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYSKVNDLGFIEAPYKKVIEGKVTDEVVYLTATQEEGLVIAPASTVLETDGAIKEDLIETRIDGEIVLSEKSKVDLIDLSPGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLNPDAPVVGTGMEKTVARDSWEAIKATRGGIVEKVDAKNIYILGEDENGAYIDHYSLQKNLRTNQNTCFSQAPIVHEGETIEAGQVIADGPNMDKGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIREDTFTSIHIYEKEIEARELKHGVEEITRDIPNVREEELAHLDESGIVKIGTFVNAGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYDKDQRAIAAYEEEKARLDLEHHDKLMMLDREEMLRLTSMLSKEPLASDVVVNEKSYKKGELIEKGDLAKINRFAMNALVKSFPKSIQEAYDQLKSNFLEQKKNLSEEHEEKLSVLEKDDILPSGVVKLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVREIDMPYTKDGEPVEIVLNPLGVPSRMNIGQILEVHLGLVGKKLGAQINEMFENQTKDWMGALRAKIIEIAQVSKMTGVDEFVSSLSDEALLSYARDWRRGVKFATPVFEGVNEEEFTKLFELARIDTDGKTELYDGKTGAKMKERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTVKSDDVEGRVKAYKAITRGEPVKESEIPETFYVLTKELQSLALDVTVYGETEEDSFVPMPIKEDDRPSDFNAFQLMLASPDKIMSWSNGEVKKPETINYRTLKPERDGLFCAKIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKTPGEAFYDNEGTKPVAKYDVLNEEQYQSLNQRFEHTGFVAQMGGEAVKELLAQIDLVELLHTLREEIKATNSEAKKKTIIKRLKVVESFINSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLRMDQCGLPKGMALELFKPHILAKLEEKGYATTLKQAKKMIEQKTNEVWECLQEIVEGYPIMLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAITECKLLMLSSMNILLPASGKAVTVPSQDMVLGLYYLSLAKEGSRGEHKLFSNVDEIMIALDADAVEINTKIRTIVDRRPLYTTVGRMIIKSILPDFVPVSLWNKVLKKKDIAALIDHVYKEGGLGITARFLDNLKDLGFKYATTAGISISSDDIRVPDIKRKTVEAAKKKVKEIQAQFGAGLLTEQERYNKIIDVWTDTNNGLGSEMMKLVQADKGGFNSIYMMADSGARGSAAQIRQLSAMRGLMAKPDGTIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVSQNVKIVMEDCGTHEGVEITDIAIGSELIEPLEERIFGRVVAEDVIDPITNEILVSEGSLIDEEMAKKIKEAGVKAVIIRTPVTCKAEKGVCSKCYGLNLGEGKVTNPGEAVGVVAAQSIGEPGTQLTLRTFHIGGTASRSQEERQVVVEKEGFIRYYNIKTYKNKEGKTVVANRRNAAVLLVEPKIKAPFEGELRVDTAHEEMVISVIGKSETVRYSLRKSDVAKPNELAGVTGKIEGKFYIPYGSGTKVREDGSIVEIIKDGWNIPNRIPYASELKVEDNAPITQKIFSKEKGIVKYYRLKGDHLERYKEITKGEKVTEKGIFAVIADTNDREAIRHYIARGSIIELADGAEVKPDSLVASPASSEQIVIADWDPYSNPIIAEEAGVVKYEDIIPGVTVTEQVDELTGQSRLVVNEYLPTSFKPTIVVASAAGNLIRYALDSKTAIFVGDGAEVEVADVLAKTPKALAKSKDITGGLPRVSELFEARKPKDPAVLAEIDGVVSFGKPIRGKERIIITADDGRTTEYAVDKSKHILVHHGEFVHAGESITDGIVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNIADKHIEIIVSQMLRQVRIVDSGNTKFIEGDLVSKRHFKEENERTIRLGGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAAKIDFLEDLKENVVLGRMIPVGTGIYKNKKIRIKEKTEGA

Annotated regions:
phrase: LTEQERYNKIIDVWTDTNNGLGSEMMKLVQADKGGFNSIYMMADSGARGSAAQIRQLSAMRGLMAKPDGTIIETPIISN
type: DOMAIN
name: RNA_pol_Rpb1_4
description: RNA polymerase Rpb1, domain 4

phrase: ATRGGIVEKVDAKNIYILGEDENGAYIDHYSLQKNLRTNQNTCFSQAPIVHEGETIEAGQVIADGPNMDKGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIREDTFTSIHIYEKEIEARELKHGVEEITRDIPNVREEELAHLDESGIVKIGTFVNAGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYDKDQRAIAAYEEEKARLDLEHHDKLMMLDREEMLRLTSMLSKEPLASDVVVNEKSYKKGELIEKGDLAKINRFAMNALVKSFPKSIQEAYDQLKSNFLEQKKNLSEEHEEKLSVLEKDDILPSGVVKLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVREIDMPYTKDGEPVEIVLNPLGVPSRMNIGQILEVHLGLVGKKLGAQINEMFENQTKDWMGALRAKIIEIAQVSKMTGVDEFVSSLSDEALLSYARDWRRGVKFATPVFEGVNEEEFTKLFELARIDTDGKTELYDGKTGAKMKERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGK
type: DOMAIN
name: DNA-dir_RNAP_su2_dom
description: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain

phrase: KQTEKIDDDNDLAAIRIYKVMRPGEPVTKDAAKSFVQQLFFDPERYDLTRVGRMKMNHKLDIEVPDYVTVLTHEDIICTVKYLIRVKNGQGHIDDRDHLGNRRI
type: DOMAIN
name: RNA_pol_Rpb2_2
description: RNA polymerase Rpb2, domain 2

phrase: RSPGVIFKEEESATSSNKLIYTGQIIPDRGSWLYFEYDAKDTLYVRINKRRKVPVTILFRALGYSKQDVI
type: DOMAIN
name: RNA_pol_Rpb2_2
description: RNA polymerase Rpb2, domain 2

phrase: GLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVSQNVKIVMEDCGTHEGVEITDIAIGSELIEPLEERIFGRVVAEDVIDPITNEILVSEGSLIDEEMAKKIKEAGVKAVIIRTPVTCKAEKGVCSKCYGLNLGEGKVTNPGEAVGVVAAQSIGEPGTQLTLRTFHIGGTASRSQEERQVVVEKEGFIRYYNIKTYKNKEGKTVVANRRNAAVLLVEPKIKAPFEGELRVDTAHEEMVISVIGKSETVRYSLRKSDVAKPNELAGVTGKIEGKFYIPYGSGTKVREDGSIVEIIKDGWNIPNRIPYASELKVEDNAPITQKIFSKEKGIVKYYRLKGDHLERYKEITKGEKVTEKGIFAVIADTNDREAIRHYIARGSIIELADGAEVKPDSLVASPASSEQIVIADWDPYSNPIIAEEAGVVKYEDIIPGVTVTEQVDELTGQSRLVVNEYLPTSFKPTIVVASAAGNLIRYALDSKTAIFVGDGAEVEVADVLAKTPKALAKSKDITGGLPRVSELFEARKPKDPAVLAEIDGVVSFGKPIRGKERIIITADDGRTTEYAVDKSKHILVHHGEFVHAGESITDGIVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNIADKHIEIIVSQMLRQVRIVDSGNTKFIEGDLVSKRHFKEENERTIRLGGEPAIAEPVLL
type: DOMAIN
name: RNA_pol_Rpb1_5
description: RNA polymerase Rpb1, domain 5

phrase: GDKMAGRHGNKG
type: CONSERVED_SITE
name: RNA_pol_bsu_CS
description: RNA polymerase, beta subunit, conserved site

phrase: LLQLQRNSYDSFLMPIENGESGIEKVFRSIFPIHDAQNRITLEYAGCEYGKPRYTVREAMERGLTYSVPLKVKIRLVLWEKDEKTGEKLGVKDIKEQSIFVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESATSSNKLIYTGQIIPDRGSWLYFEYDAKDTLYVRINKRRKVPVTILFRALGYSKQDVIKTFYPLMKVKAEAGKYLMPFNPEEFIGRIEFDIRDTSGNLIIGAGKRLTQKRAKTLKEQGLEWVEYPVEILLDRHLAEPIVDKESGEVILDTLVQLDEGKLKKIHELGIKEFTIANDLAQGVDASIIHSFVADNESLKLLKQTEKIDDDNDLAAIRIYKVMRPGEPVTKDAAKSFVQQLFFDPERYDLTRVGRMKMNHKLDIEVPDYVTVLTHEDIICTVKYLIRVKNGQGHIDDRDHLGNRRIRAIGELLANELHTGLVKMQKAIRDKLTTMSGNLDELMPHDLVNSKMIT
type: DOMAIN
name: RNA_pol_bsu_protrusion
description: RNA polymerase, beta subunit, protrusion

phrase: QFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYSK
type: DOMAIN
name: RNA_pol_Rpb2_3
description: RNA polymerase Rpb2, domain 3

phrase: NILLPASGKAVTVPSQDMVLGLYYLSLAKEGSRGEHKLFSNVDEIMIALDADAVEINTKIRTIVDRRPLYTTVGRMIIKSILPDFVPVSLWNKVLKKKDIAALIDHVYKEGGLGITARFLDNLKDLGFKYATTAGISISSDD
type: DOMAIN
name: RNA_pol_Rpb1_3
description: RNA polymerase Rpb1, domain 3

phrase: DFNAFQLMLASPDKIMSWSNGEVKKPETINYRTLKPERDGLFCAKIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKTPGEAFYDNEGTKPVAKYDVLNEEQYQSLNQRFEHTGFVAQMGGEAVKELLAQIDLVELLHTLREEIKATNSEAKKKTIIKRLKVVESFINSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQN
type: DOMAIN
name: RNA_pol_Rpb1_1
description: RNA polymerase Rpb1, domain 1

phrase: EWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLRMDQCGLPKGMALELFKPHILAKLEEKGYATTLKQAKKMIEQKTNEVWECLQEIVEGYPIMLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAITECKLLMLSSMNILLPASGKAVTVPSQDMVLGLYYL
type: DOMAIN
name: RNA_pol_N
description: RNA polymerase, N-terminal

phrase: GKRVDFSGRSVIVVGPNLRMDQCGLPKGMALELFKPHILAKLEEKGYATTLKQAKKMIEQKTNEVWECLQEIVEGYPIMLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAITECKLLM
type: DOMAIN
name: RNA_pol_asu
description: RNA polymerase, alpha subunit

phrase: GGQRFGEMEVWALEAYGAAHTLKEMLTVKSDDVEGRVKAYKAITRGEPVKESEIPETFYVLTKELQSLALDVTV
type: DOMAIN
name: RNA_pol_Rpb2_7
description: RNA polymerase Rpb2, domain 7

phrase: YKKVIEGKVTDEVVYLTATQEEGLVIAPASTVLETDGAIKEDLIETRIDGEIVLSEKSKVDLIDL
type: DOMAIN
name: DNA-dir_RNA_pol_bsu_external_1
description: DNA-directed RNA polymerase, beta subunit, external 1 domain