nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MDLLEDDVKRRMRGLGDFHLRSAIVPIEINSLRAGIGRARELRAFRRIMQYHPNVFCGDPASTLAQILRTSSSGELKSILMFKETVELIKAEYKGMGFLTSNQDPMERLLMLLMKVKGIRSRYASSKIAYQRLLMCANAMNSQRSYSVFQLDTDVVPGAPSLTVNGLTVGVWGEFITISSADNPISLFSLDVLRMIVDKLTERDNVIISSFIGEKIFPHIYPKVDVITQVFDLFDNWLYYKGNSGYRLMKTYEALVTGTILKRDKSNYHNSEDFLENTIAGLEQDEQEVARKFVHILDDSKPSPHHLTQIMGLFRLWGHPQVDAKKGVEKVRTIGTKKKYISEHASQIAGRKFKEIFFSEYFRKNRVYPACIVEEDCWLNEFIVQNLGINLKDPRYHLSDWDCVEPRETFSIPTTFNLSMIVSDTAISPTREEIFSCQEKGIPPMDPFIRRGVLKWMKDGLIDCDSLLKGINSCQTGLDKDNRIIGLYPKEREMNPTARMFALMSLKMRSYVVITENMLSENILPHVPGITMTYSMLDLAKEMIKSTRSQGKQGDFSRTFCINMDFEKWNLNMRKEATYYTFLEIGRLFGLPQLYNRTYDIFRNSLIYLADGSYTPKLDDNLDSLEKDQNLCYTDHIGGFEGLRQKGWTIFTVVLIAHVCDQLGIQYRLMGQGDNQVLMVTIHSKHARLNGIDSPGSKNEIAGKLQMLLRSLQDTFSEVGLPLKPLETWVSDTYFSYGKMPIYKGVPLCSSLKRISRIFYFSNEDLMT

Annotated regions:
phrase: RTFCINMDFEKWNLNMRKEATYYTFLEIGRLFGLPQLYNRTYDIFRNSLIYLADGSYTPKLDDNLDSLEKDQNLCYTDHIGGFEGLRQKGWTIFTVVLIAHVCDQLGIQYRLMGQGDNQVLMVTIHSKHARLNGIDSPGSKNEIAGKLQMLLRSLQDTFSEVGLPLKPLETWVSDTYFSYGKMPIYK
type: DOMAIN
name: Mononeg_RNA_pol_cat
description: Mononegavirales RNA-directed RNA polymerase catalytic domain

phrase: SSADNPISLFSLDVLRMIVDKLTERDNVIISSFIGEKIFPHIYPKVDVITQVFDLFDNWLYYKGNSGYRLMKTYEALVTGTILKRDKSNYHNSEDFLENTIAGLEQDEQEVARKFVHILDDSKPSPHHLTQIMGLFRLWGHPQVDAKKGVEKVRTIGTKKKYISEHASQIAGRKFKEIFFSEYFRKNRVYPACIVEEDCWLNEFIVQNLGINLKDPRYHLSDWDCVEPRETFSIPTTFNLSMIVSDTAISPTREEIFSCQEKGIPPMDPFIRRGVLKWMKDGLIDCDSLLKGINSCQTGLDKDNRIIGLYPKEREMNPTARMFALMSLKMRSYVVITENMLSENILPHVPGITMTYSMLDLAKEMIKSTRSQGKQGDFSRTFCINMDFEKWNLNMRKEATYYTFLEIGRLFGLPQLYNRTYDIFRNSLIYLADGSYTPKLDDNLDSLEKDQNLCYTDHIGGFEGLRQKGWTIFTVVLIAHVCDQLGIQYRLMGQGDNQVLMVTIHSKHARLNGIDSPGSKNEIAGKLQMLLRSLQDTFSEVGLPLKPLETWVSDTYFSYGKMPIYKGVPLCSSLKRISRIFYFSNE
type: DOMAIN
name: Mononeg_RNA_pol_cat
description: Mononegavirales RNA-directed RNA polymerase catalytic domain
Protein sequence:
MMQALTNPFPIGSSSLIHCMTNEISCEMLANGILALGCKPVMADDPREVLDFTKQSQALFINLGHLSAEKEKAIRMAALYANQSSLPMVVDAVGVTTSSIRKSLVKDLLDYRPTVLKGNMSEIRSLVGLKHHGVGVDASAKDQETEDLLQVLKDWCQTYPGMSFLVTGPKDLVVSKNQVAVLENGCTELDWITGTGDLVGALTAVFLSQGKTGFEASCLAVSYLNIAAEKIVVQGMGLEEFRYQVLNQLSLLRRDENWLDTIKGEAYE

Annotated regions:
Protein sequence:
MSNAIDELQAIIAELKSELEEQKTCTRNARERIERMSAEVVDSNPYSRLMALQRMNIVKDYERIRDKAVAIVGVGGVGSVTADMLTRCGIGKLILFDYDKVELANMNRLFFTPDQAGLSKVEAAARTLSFINPDVRIETHNYNITTVDNFDKFLSTISESGMQQGQPVDLVLSCVDNFEARMAINAACNENNLNWFESGVSENAVSGHIQFIRPGDTACFACAPPLVVAENIDERTLKREGVCAASLPTTMGITAGLLVQNALKYLLNFGEVSDYLGYNALNDFFPKMTLKPNTQCDDRHCLQRQKEFQERPKPVLQQVEEVSDEPLHASNDWGIELVADDAPVAEQAPKATDTANVASGLRLAYEAPEKEAVDQAGHAAAGDGMPETSLEDLMAQMKSM

Annotated regions:
phrase: VAIVGVGGVGSVTADMLTRCGIGKLILF
type: CONSERVED_SITE
name: D-isomer_DH_CS1
description: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1

phrase: YSRLMALQRMNIVKDYERIRDKAVAIVGVGGVGSVTADMLTRCGIGKLILFDYDKVELANMNRLFFTPDQAGLSKVEAAARTLSFINPDVRIETHNYNITTVDNFDKFLSTISESGMQQGQPVDLVLSCVDNFEARMAINAACNENNLNWFESGVSENAVSGHIQFIRPGDTACFACAPPLVVAENIDERTLKREGVCAASLPTTMGITAGLLVQNALKYLLNFGEVSDYLGYNALNDFFPKMTLKPNTQC
type: DOMAIN
name: ThiF_NAD_FAD-bd
description: THIF-type NAD/FAD binding fold
Protein sequence:
MAITKEDILEAVAGLTVMELNDLVKAFEEKFGVSAAAVAVAGPAGAGAAAAEEKTEFDVVLSAAGDNKVGVIKVVRAITGLGLKEAKDLVDGAPKNVKEGVAKAEAEDIVKQLTEAGAKAEIK

Annotated regions:
phrase: TKEDILEAVAGLTVMELNDLVKAFEEKFGVSAAAVAVAGPAGAGAA
type: DOMAIN
name: Ribosomal_bL12_oligo
description: Large ribosomal subunit protein bL12, oligomerization

phrase: FDVVLSAAGDNKVGVIKVVRAITGLGLKEAKDLVDGAPKNVKEGVAKAEAEDIVKQLTEAGAKAEI
type: DOMAIN
name: Ribosomal_bL12_C
description: Large ribosomal subunit protein bL12, C-terminal
Protein sequence:
MAPAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGKLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEKFKPGKWMIQYNNLNLKTPVPSDIDISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALERLKHRPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLYQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLVPSVNGVRRFSDIQIRRLKRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKGHTRTAQFDISVASEIMAVLALTTSLEDMRERLGKMVVASSKKGEPVSAEDLGVSGALTVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGADIGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIQENLELVEKGFSNLKKQIENARMFGIPVVVAVNAFKTDTESELDLISRLSREHGAFDAVKCTHWAEGGKGALALAQAVQRAAQAPSSFQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNLPICMAKTHLSLSHNPEQKGVPTGFILPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPETEQVNGLF

Annotated regions:
phrase: GIKGGAAGGG
type: CONSERVED_SITE
name: Formate_THF_ligase_CS
description: Formate-tetrahydrofolate ligase, FTHFS, conserved site

phrase: VATVRALKMHG
type: CONSERVED_SITE
name: Formate_THF_ligase_CS
description: Formate-tetrahydrofolate ligase, FTHFS, conserved site

phrase: PGGVGPMT
type: CONSERVED_SITE
name: THF_DH/CycHdrlase_CS
description: Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site

phrase: SINAGKLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAK
type: DOMAIN
name: THF_DH/CycHdrlase_NAD-bd_dom
description: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

phrase: LNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDV
type: DOMAIN
name: THF_DH/CycHdrlase_cat_dom
description: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

phrase: PEKDVDGLTSINAGKLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESA
type: DOMAIN
name: THF_DH/CycHdrlase_NAD-bd_dom
description: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

phrase: ESEVMKYITSLNEDSTVHGFLVQLP
type: CONSERVED_SITE
name: THF_DH/CycHdrlase_CS
description: Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site
Protein sequence:
MTYWLCITTQENWEIIKEKNVWGVPERHKNAISRVKPGDLLLIYVKQRGVGKEIEGPKVVAVYEAVSEVFRDSSRIFKSPPEMGNEAFPLRVRLRPVKIFEEPVDFKKLIPDLKFIENKRKWTGHLMGKAMREIPEEDFKLITSSSK

Annotated regions:
phrase: TYWLCITTQENWEIIKEKNVWGVPERHKNAISRVKPGDLLLIYVKQRGVGKEIEGPKVVAVYEAVSEVFRDSSRIFKSPPEMGNEAFPLRVRLRPVKIFEEPVDFKKLIPDLKFIENKRKWTGHLMGKAMREIPEEDFKLI
type: DOMAIN
name: EVE_domain
description: EVE domain
Protein sequence:
MLPGLRRLLQGPASACLLLTLLALPSVTPSCPMLCTCYSSPPTVSCQANNFSSVPLSLPPSTQRLFLQNNLIRSLRPGTFGPNLLTLWLFSNNLSTIHPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGLGSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNSLASLPGEALADLPALEFLRLNANPWACDCRARPLWAWFQRARVSSSDVTCATPPERQGRDLRALRDSDFQACPPPTPTRPGSRARGNSSSNHLYGVAEAGAPPADPSTLYRDLPAEDSRGRQGGDAPTEDDYWGGYGGEDQRGEQTCPGAACQAPADSRGPALSAGLRTPLLCLLPLALHHL

Annotated regions:
phrase: LGSLDRLLLHGNRLQGVHRAAFH
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: LVSLQYLYLQENSLLHLQDDLFA
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: LSRLTILYLFNNSLASLPGEALA
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: LERLQSLHLYRCQLSSLPGNIFR
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: LQALEELDLGDNRHLRSLEPDTFQ
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: QRLFLQNNLIRSLRPGTFG
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: LANLSHLFLHGNRLRLLTEHVFR
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: NLLTLWLFSNNLSTIHPGTFR
type: REPEAT
name: Leu-rich_rpt_typical-subtyp
description: Leucine-rich repeat, typical subtype

phrase: NLLTLWLFSNNLSTIHPGTFRH
type: REPEAT
name: Leu-rich_rpt
description: Leucine-rich repeat

phrase: SLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNSLASLPGEALADLPALEFLRLNAN
type: REPEAT
name: Leu-rich_rpt
description: Leucine-rich repeat

phrase: ALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENS
type: REPEAT
name: Leu-rich_rpt
description: Leucine-rich repeat

phrase: NPWACDCRARPLWAWFQRARVSSSDVTCATPPERQGRDLRALRDSDFQAC
type: DOMAIN
name: Cys-rich_flank_reg_C
description: Cysteine-rich flanking region, C-terminal
Protein sequence:
MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGKTTLTKFIIEALISTGGTGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVEPGENTAYISPFFTHKDFYQCELTEVKRSNAPIIDVATDVRNGKWNYDKVVDGHGVRGFTGDTALRDFMVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRKKIFETDKDFIVGEIIVMQEPLFKTYKIDGKPVSEIIFNNGQLVRIIEAEYTSTFVKARGVPGEYLIRHWDLTVETYGDDEYYREKIKIISSDEELYKFNLFLAKTAETYKNWNKGGKAPWSDFWDAKSQFSKVKALPASTFHKAQGMSVDRAFIYTPCIHYADVELAQQLLYVGVTRGRYDVFYV

Annotated regions:
phrase: DKDFIVGEIIVMQEPLFKTYKIDGKPVSEIIFNNGQLVRIIEAEYTSTFVKARGVPGEYLIRHWDLTVETYGDDEYYREKIKIISSDEELYKFNLFLAKTAETYKNWNKGGKAPWSDFWDAKSQFSKVK
type: DOMAIN
name: SH3_14
description: Dda helicase SH3 domain

phrase: KKHHVTINGPAGTGKTTLTKFIIEALISTGGTGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVEPGENTAYISPFFTHKDFYQC
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain
Protein sequence:
MAVSPKINRREHILQCLAQMLETSPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINIIMDDEKDTMKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRSRISTLFAKIETQLKQILREKTLREGKGFNLDEAILANLLLAFAEGRIAQFVRSEFKLKPTQHFDEQWRFIQHQLLQS

Annotated regions:
phrase: KDTMKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRSRISTLFAKIETQLKQILREKTLREGKGFNLDEAILANLLLAFAEGRIAQFVRSEFKLKPTQHFDEQWRFIQHQ
type: DOMAIN
name: SlmA-like_C
description: Nucleoid occlusion factor SlmA-like, C-terminal

phrase: INRREHILQCLAQMLETSPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLIEFIEES
type: DOMAIN
name: HTH_TetR
description: DNA-binding HTH domain, TetR-type

phrase: ITTAKLASEVGVSEAALYRHFPSKARMF
type: DOMAIN
name: HTH_TetR
description: DNA-binding HTH domain, TetR-type
Protein sequence:
MTEQRRSPHHPATRPPAPPGTSRRVRLPASALRPLVLAMAGLTVSAHAQYGATSAIPNIDLVEPVVTQTPEAPPPPAEGGDLVPRLTEPATRTAPSGNTLNLSPSSTPSNPNAPAYVSGDRVTGYSEKGVEMEGHAELRRDGGVIKGDRLTYDQDTDEAHATGNVRLSKSGTLAVGPEARMRVQANEGYMLSPDYYFQQTGGSGSAERVDFLDPDRSTLKKATYTTCSPDNADWYFSARKLDLDSDRQVGTAYGGVLNFFGVPIAGAPAFSFPLNGERRSGVLPPLFGYGSNSGADLTVPYYFNLAPNRDLTIYPRILTSRGVQLGEDFRYVGDGYSGRIRGEFLPDDKKAGRNRWAYSIQHYQSIIPGMTAYVNVSKVSDDKYPDDLTRSVSQSTLRQYTQEGGVIYAWQDWVFMARVQKFQTLLPSEPSYEREPQLNAKYNRYDFHGFDISLETDYTRFRIPLTSTGFQQPEGNRAFIQPTISYPIIHPGWYVTPKFIFNAAQYNMDAGTNTTGASNTLNRAIPTVSLDSGMTFERDAPGVSKLFGVKYTQTLEPRLFYVYTPFYDQSQFPLFDTVQSDFGYGQIFTENPFTGNDRIADNNKLTLGLTTRLIESETGVERFRGTIAQRVDFTGQRVQLNGTLPDAKPSYSDLLAATTIQLFRGYYLDAGIQWNPDQDKVNYSNVALAYRPESRKLINFGYRYRRPTSVTDNTAIDQIEMSGQWPITQRTYGIGRVAFDKSANQLVDALAGFEYAADCWVGRFVYQRFRNTSNGYTGRVFFQVEFRGLSKIGSNPLDMLRLNVPGYEPVTARPVPTTPYDHYE

Annotated regions:
phrase: RNRWAYSIQHYQSIIPGMTAYVNVSKVSDDKYPDDLTRSVSQSTLRQYTQEGGVIYAWQDWVFMARVQKFQTLLPSEPSYEREPQLNAKYNRYDFHGFDISLETDYTRFRIPLTSTGFQQPEGNRAFIQPTISYPIIHPGWYVTPKFIFNAAQYNMDAGTNTTGASNTLNRAIPTVSLDSGMTFERDAPGVSKLFGVKYTQTLEPRLFYVYTPFYDQSQFPLFDTVQSDFGYGQIFTENPFTGNDRIADNNKLTLGLTTRLIESETGVERFRGTIAQRVDFTGQRVQLNGTLPDAKPSYSDLLAATTIQLFRGYYLDAGIQWNPDQDKVNYSNVALAYRPESRKLINFGYRYRRPTSVTDNTAIDQIEMSGQWPITQ
type: DOMAIN
name: LptD_C
description: LptD, C-terminal
Protein sequence:
MLSPKVLVRLVDSQQQILLLSSALCSPQQLSRRFLTPMQAYEQRIESKELLPDKVQKKTTQELEDLYNTLKNYQPKPVRVETSSGGGFFGRFMKKEQSAPKIELLNTTAPKGMYIYGSVGGGKTTLMDMFYSCCDDIPKKQRVHFNSFMSKVHGLIHKVKQERGPQDRAFNSEKPLPFDPTLPVAEMIANESWLICFDEFQVTDIADAMILKSLFTHLFNEGIVCIATSNRHPNDLYKNGLQRSNFIPFIGVLLNRCNVAAMDSGVDYRRIAQSGDTNYFVTTQTDAKSQMERMFKILCSQENDIIRPRTITHFGRDLTFQRTCGQVLDSNFEELCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDTLYDNRVRVVISAEVPLDQLFSFTDKPKDLADEQRMLMDDLKLGDTDTSASVFTGEEEMFAFDRTISRLYEMQKKEYWEQWAKHR

Annotated regions:
Protein sequence:
MSKDNPKDFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKLDVQAVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVKLGNDAVGNTVKVKTVKNKVAPPFKEVELTLLYGKGFDQLSDLVTLAADMDIIKKAGSFYSYGEERIGQGKEKAIAYIAERPELEQEIRDRVLAAIKEGRDPIAAVPETPALAE

Annotated regions:
phrase: RGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKI
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: ALKFYASV
type: CONSERVED_SITE
name: DNA_recomb/repair_RecA_CS
description: DNA recombination/repair protein RecA, conserved site

phrase: DVQAVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ
type: DOMAIN
name: RecA_ATP-bd
description: DNA recombination and repair protein RecA-like, ATP-binding domain

phrase: GVMYGNPETTTGGRALKFYASVRLDVRKIGQPVKLGNDAVGNTVKVKTVKNKVAPPFKEVELTLLYGKGFDQLS
type: DOMAIN
name: RecA_monomer-monomer_interface
description: DNA recombination and repair protein RecA, monomer-monomer interface

phrase: DLVTLAADMDIIKKAGSFYSYGEERIGQGKEKAIAYIAERPELEQEIRDRVLAA
type: DOMAIN
name: RecA-like_C
description: RecA-like, C-terminal

phrase: KAIETAMTQIEKAFGKGSIMRLGAESKLDVQAVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVKLGNDAVGNTVKVKTVKNKVAPPFKEVELTLLYGKG
type: DOMAIN
name: RecA-like_N
description: RecA-like, N-terminal
Protein sequence:
MAKKVLGFIKLQIPAGAANPAPPVGPALGQKGVNIMEFCKQFNAKTQSEAGMIIPVVITVYSDKSFTFITKTPPAAVLLLKEASLKKGSGEPNRNKVGTVTRDQVRKIAELKMPDLNAVNSEGAEEMIMGTARSMGIVVEG

Annotated regions:
phrase: IKLQIPAGAANPAPPVGPALGQKGVNIMEFCKQFNAKTQSEAGMIIPVVITVYSDKS
type: DOMAIN
name: Ribosomal_uL11_N
description: Large ribosomal subunit protein uL11, N-terminal

phrase: KTPPAAVLLLKEASLKKGSGEPNRNKVGTVTRDQVRKIAELKMPDLNAVNSEGAEEMIMGTARSMGIV
type: DOMAIN
name: Ribosomal_uL11_C
description: Large ribosomal subunit protein uL11, C-terminal
Protein sequence:
MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS

Annotated regions:
phrase: PEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLT
type: DOMAIN
name: Chromo_shadow_dom
description: Chromo shadow domain

phrase: LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYP
type: DOMAIN
name: Chromo/chromo_shadow_dom
description: Chromo/chromo shadow domain

phrase: EEEYVVEK
type: DOMAIN
name: Chromo_dom_subgr
description: Chromo domain subgroup

phrase: VVKGQVEYLLKWKG
type: DOMAIN
name: Chromo_dom_subgr
description: Chromo domain subgroup

phrase: SEEHNTWEPEKN
type: DOMAIN
name: Chromo_dom_subgr
description: Chromo domain subgroup

phrase: YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGE
type: DOMAIN
name: Chromo/chromo_shadow_dom
description: Chromo/chromo shadow domain

phrase: YLLKWKGFSEEHNTWEPEKN
type: CONSERVED_SITE
name: Chromodomain_CS
description: Chromo domain, conserved site

phrase: YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMK
type: DOMAIN
name: Chromo_domain
description: Chromo domain

phrase: GLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEER
type: DOMAIN
name: Chromo/chromo_shadow_dom
description: Chromo/chromo shadow domain

phrase: EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKY
type: DOMAIN
name: Chromo/chromo_shadow_dom
description: Chromo/chromo shadow domain

phrase: RGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHA
type: DOMAIN
name: Chromo_shadow_dom
description: Chromo shadow domain
Protein sequence:
MSLLAVGLNHRTAPTSLLELAAVSADDAPKVLHDLVGADHLSEAVLLSTCNRTEIYAEVETFHGGLADISDQLSRVCGVPLTDLASHLYVHHEARAVSHLFSVVCGLDSMLVGETQILGQVRAAFRLAQAAEVTSGTLANLFQTALRVGKRAHTETSIDAAGASIVSVGVRMAAFDLQARRPDMLVAPVASPGCDPGDAVEALLRPELTAPVEVAGPAPLAGARVLIIGAGAVGSLAAQTVRRAGAGDVVVANRTAARAARVADLHDARAVGLAEIAHEVGRADLVISSTGASGLVVGHDAVRASLAGRGARPLVFLDLALPRDIDPAVRELPGVTLIDIEALRVALDGAQVAHDVEAVRALVTTEVAGFLDRRRAERVAPTVVALRAHAAAVVRDELERLRTRLPDLDNREWDMVSGTVRRVVDKLLHAPTVRVQQLAEAPGGDSYAEALRELFDLPRDVPAIVSAPDLDLVERT

Annotated regions:
phrase: LAGARVLIIGAGAVGSLAAQTVRRAGAGDVVVANRTAARAARVADLHDARAVGLAEIAHEVGRADLVISSTGASGLVVGHDAVRASLAGRGARPLVFLDLALPRDIDPAVRELPGVTLIDIEAL
type: DOMAIN
name: Shikm_DH/Glu-tRNA_Rdtase
description: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase

phrase: VGLNHRTAPTSLLELAAVSADDAPKVLHDLVGADHLSEAVLLSTCNRTEIYAEVETFHGGLADISDQLSRVCGVPLTDLASHLYVHHEARAVSHLFSVVCGLDSMLVGETQILGQVRAAFRLAQAAEVTSGTLANLFQTALRVGKRAHTE
type: DOMAIN
name: 4pyrrol_synth_GluRdtase_N
description: Glutamyl-tRNA reductase, N-terminal

phrase: HLFSVVCGLDSMLVGETQILGQV
type: CONSERVED_SITE
name: GluRdtase_CS
description: Glutamyl-tRNA reductase, conserved site

phrase: VRALVTTEVAGFLDRRRAERVAPTVVALRAHAAAVVRDELERLRTRLPDLDNREWDMVSGTVRRVVDKLLHAPTVRVQQLAEAPGGDSYAEALRELFD
type: DOMAIN
name: 4pyrrol_synth_GluRdtase_dimer
description: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain
Protein sequence:
MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPSAPPALFELCGRAVSAHMGVLESGVWALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEAFFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQLIHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAKQTARAAPATRVTRRSTQESLTAGGTDSKREPLPPATSHEAPGTKRPPSAPATTSSASASSSTSSSKRAPASSAPQPKPLKRFKRAAGKKGARTRQGCGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSVQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSNVIGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLTLKRLSFHDMNLADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQDAVTAREAIRRLRATCHVVSDSWDSSQAFADYVSTM

Annotated regions:
Protein sequence:
MAFGAGGGGRRPFFRRRKTCPFSGPNAPKIDYKDVKLLSRYVSERGKIVPSRITAVSAKKQRELAQAIKRARFLGFLPYVIR

Annotated regions:
phrase: IDYKDVKLLSRYVSERGKIVPSR
type: CONSERVED_SITE
name: Ribosomal_bS18_CS
description: Small ribosomal subunit protein bS18, conserved site
Protein sequence:
MRDPLTDCSYNKVYKSLKEFAQHGDNFCKQITSVLQQRANLEISYAKGLQKLAVRLSKALQSTKKNCLSTAWAWASESMKSAADLHQKLGKAIELEAIKPTHQVLSMQEKKRKSLDNEVEKTANLVINNWNQQIKAKKKLMMSTKKHEALFHLVESSKQSLTQKEKQKLLNKLKKSTEKLEKEDESYYQKNMAGYSTRLKWESTLENCYKSMLELEKERIQLLCNNLNQYSQHISLFGQTLTTCHTQIHCAISKVDVEKDIQALMEETAILSIENKSELLLADYFEEDPKNPMDKERRKSLLKPKLGRLQRDIEKASRDKEGLERKLKALASSSSFSDAKSQKDMETLMDENSLKLDLLQANSYKLSSVLADLEQRPKPCHPCSTCIFKWKEKEHSHTYVKISRPLLTKRLEKAESKAPAGGQNNPSSSPSGSTVSQASKHLCKALYTFQARQDDELNLEKGDIVTVHEKKEEGWWFGSLKGKRGHFPAAYVEELPPKAGNTATQA

Annotated regions:
phrase: HLCKALYTFQARQDDELNLEKGDIVTVHEKKEEGWWFGSLKGKRGHFPAAYVEEL
type: DOMAIN
name: SH3_domain
description: SH3 domain

phrase: ALYTFQARQDDELNLEKGDIVTVHEKKEEGWWFGSLKGKRGHFPAAYV
type: DOMAIN
name: SH3_domain
description: SH3 domain

phrase: CKALYTFQARQDDELNLEKGDIVTVHEKKEEGWWFGSLKGKRGHFPAAYVE
type: DOMAIN
name: Nostrin_SH3
description: Nostrin, SH3 domain

phrase: PMDKERRKSLLKPKLGRLQRDIEKASRDKEGLERKLKALASSSSFSDAKSQKDMETLMDENSLKLDLLQANSYKLSSVLA
type: DOMAIN
name: HR1_rho-bd
description: HR1 rho-binding domain

phrase: ASKHLCKALYTFQARQDDELNLEKGDIVTVHEKKEEGWWFGSLKGKRGHFPAAYVEELP
type: DOMAIN
name: SH3_domain
description: SH3 domain

phrase: YKSLKEFAQHGDNFCKQITSVLQQRANLEISYAKGLQKLAVRLSKALQSTKKNCLSTAWAWASESMKSAADLHQ
type: DOMAIN
name: FCH_dom
description: FCH domain

phrase: MRDPLTDCSYNKVYKSLKEFAQHGDNFCKQITSVLQQRANLEISYAKGLQKLAVRLSKALQSTKKNCLSTAWAWASESMKSAADLHQKLGKAIELEAIKPTHQVLSMQEKKRKSLDNEVEKTANLVINNWNQQIKAKKKLMMSTKKHEALFHLVESSKQSLTQKEKQKLLNKLKKSTEKLEKEDESYYQKNMAGYSTRLKWESTLENCYKSMLELEKERIQLLCNNLNQYSQHISLFGQTLTTCHTQIHCAISKVDVEK
type: DOMAIN
name: F_BAR
description: F-BAR domain

phrase: HLCKALYTFQ
type: DOMAIN
name: SH3_domain
description: SH3 domain

phrase: DELNLEKGDIVTVHE
type: DOMAIN
name: SH3_domain
description: SH3 domain

phrase: EEGWWFGSL
type: DOMAIN
name: SH3_domain
description: SH3 domain

phrase: KRGHFPAAYVEE
type: DOMAIN
name: SH3_domain
description: SH3 domain
Protein sequence:
MSELLLPPEHRYAKIIKEKLNEDGSELSILNLGPTHPATHGIFQNILLMDGERIVDAEPTIGYIHRAFEKIAENRPFYQITPLTDRMNYCSSPINNMAWWMTLEKLLDIEVPKRAQYLRVIVMELARITDHIICNSILGVDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPKAFQLLNTFLEEFPIAWKEFENLFERNRIFIDRTVNVGAISAEKAMAYGFTGPNLRAAGIDYDVRVAEPYSSYEDFEFIIPVGKSGDTYDRFCVRNAEVWESLSIIRQALAKMPEGNVYHAEVPDYYLPPKEDVYHNMESLIYHFKIVMGEVPVPVAEIYHAVEGGNGELGFYLTTDGSRTPYRLHFRRPCFIYYQAYPEMIKGALLSDAIVILSSLNVIAGELDA

Annotated regions:
phrase: IHRAFEKIAEN
type: CONSERVED_SITE
name: NADH_UbQ_OxRdtase_49kDa_CS
description: NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site

phrase: DTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPKAFQLLNTFLEEFPIAWKEFENLFERNRIFIDRTVNVGAISAEKAMAYGFTGPNLRAAGIDYDVRVAEPYSSYEDFEFIIPVGKSGDTYDRFCVRNAEVWESLSIIRQALAKMPEGNVYHAEVPDYYLPPKEDVYHNMESLIYHFKIVMGEVPVPVAEIYHAVEGGNGELGFYLTTDGSRTPYRLHFRRPCFIYYQAYPEMIKGALLSDAIVILSSLNVIAGEL
type: DOMAIN
name: NADH_Q_OxRdtase_suD
description: NADH-quinone oxidoreductase, subunit D
Protein sequence:
MPANLSSALETFKRQRDAAEAHYLKANRVSVFFREYTAAVETLLAALWVEHFQNSALCLMAVGGFGRGELYPCSDVDLAVVSPAPLSDGIQEQIARFVQTLWDCKLMPSVKSGSVGELCESVRDDITGDTAFLEARFLFGNRQTADELAKKMNAQRNVAAFVEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATDLPDLLKQRILTRAEAGMLSHGYRRLAHIRIHLHLNAKRAEDRLLFDLQPQVAESMGYEGLNLRRQSEELMRVFYRAIKTVKQLGGILTPMLQSRVSSTPLRVTLRIDDDYIQVNNQIAARHTDIFFRRPEHIFKIVEIMQQRNDITALEPQTLRAWWGATRKINRSFYQNSENRHRFAGFFRNGNGLTQTLRFLNLYGVLGRYLPAWEKIVGLLQHDLFHIYPVDDHILTVVRNVRRLALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHFLTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDIRGTNPKLWNAWRASLLESLFHAAGRYLTGNGGNPHTLFGRRRQEAADLLTRAAVPEKQQKKLWNALGSAYFARHQSREILWHAANLVHDFETPIVRSRILPQSDSFQVMVFMPNGPRLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAELNSFIHGHTVAEISSHSRRISRRSRYMPIAPSITITPEEDYPDWYSVEITAVNRPFLLADMAEVFFAHNVSLRYAKISTLDERAEDSFTVFSPDLNNPKIQSSLKQTLLEQLS

Annotated regions:
phrase: QVMVFMPNGPRLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAELNSFIHGHTVAEISSHS
type: DOMAIN
name: ACT_dom
description: ACT domain

phrase: VDDHILTVVRNVRRLALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHFLTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSA
type: DOMAIN
name: HD_domain
description: HD domain

phrase: VDDHILTVVRNVRRLALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHFLTEEESDLLAWLVENHLLMSTV
type: DOMAIN
name: HD_domain
description: HD domain

phrase: FVEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATDLPDLLKQRILTRAEAGMLSHGYRRLAHIRIHLHLNAKRAEDRLLFDLQPQVAESMGYEGLNLRRQSEELMRVFYRAIKTVKQL
type: DOMAIN
name: PII_UdlTrfase/GS_AdlTrfase
description: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase

phrase: SVEITAVNRPFLLADMAEVFFAHNVSLRYAKISTLDERAEDSFTVFSPDLNNPKIQSSLKQTLLEQL
type: DOMAIN
name: ACT_dom
description: ACT domain

phrase: HIYPVDDHILTVVRNVRRLALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHFLTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDIRGTNPKLWNAWR
type: DOMAIN
name: HD/PDEase_dom
description: HD/PDEase domain

phrase: YPVDDHILTVVRNVRRLALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHFLTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDIRGTNPKLWNAWRASLLES
type: DOMAIN
name: HD/PDEase_dom
description: HD/PDEase domain
Protein sequence:
MKQQFDSIEAALDDLMQGKVIIVVDDEDRENEGDFVALAEKATPEVINFMIKEGRGLVCMPITEERAEELELSPMVAHNTDNHGTAFTVSIDHVDTTTGISAHERSLTVQAITSSDTKHTDFRRPGHIFPLIAKKGGVLRRAGHTEAAVDLARMCDAYPAGVICEVIKEDGSMARVPDLMEIAEQHDLKIITIQDLIEYRNLKEKLVKREAEIKLPTDFGVFKAIVYSNQADNKEHMAIVKGTIDHDLPTLVRVHSECLTGDVFHSHRCDCGPQLEAALKQIEEAGNGILLYMRQEGRGIGLLNKLKAYELQEQGFDTVEANLKLGFAPDLRNYGIGAQILKDLGVRKMRLMTNNPRKIKGLEGYGLEVVERVPIQLPENEDNDRYLRTKKSKLGHMLKFED

Annotated regions:
phrase: REAEIKLPTDFGVFKAIVYSNQADNKEHMAIVKGTIDHDLPTLVRVHSECLTGDVFHSHRCDCGPQLEAALKQIEEAGNGILLYMRQEGRGIGLLNKLKAYELQEQGFDTVEANLKLGFAPDLRNYGIGAQILKDLGVRKMRLMTNNPRKIKGLEGYGLEVVERV
type: DOMAIN
name: GTP_cyclohydro_II
description: GTP cyclohydrolase II
Protein sequence:
MSLTEARFHELIDDLQQNVEDVFEDSDLDVDLENSAGVLSVRFENGSQLILSRQEPLRQLWLAARSGGFHFDYDEAGGRWICDASGDSLGELLARVTLEQIGEELEFPEL

Annotated regions:
phrase: ILSRQEPLRQLWLA
type: CONSERVED_SITE
name: Frataxin_CS
description: Frataxin conserved site