nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MAAEREPPPLGDVKPTDFEELEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGSKPVEVVLDDDREDLFAEATEEVSLDSPERELILSSEPSPAVTPVTPTTLIAPRIESKSISAPVIFDRSRDEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKAVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA

Annotated regions:
phrase: FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELP
type: DOMAIN
name: PX_dom
description: Phox homology

phrase: MFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLE
type: DOMAIN
name: PX_dom
description: Phox homology

phrase: IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES
type: DOMAIN
name: SNX2_PX
description: SNX2, PX domain

phrase: RMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKAVIIKYLESLVQTQQQLIKYWEAFL
type: DOMAIN
name: Vps5_C
description: Sorting nexin/Vps5-like, C-terminal

phrase: DIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES
type: DOMAIN
name: PX_dom
description: Phox homology

phrase: AAEREPPPLGDVKPTDFEELEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGSKPVEVVLDDDREDLF
type: DOMAIN
name: Sorting_nexin_N
description: Sorting nexin, N-terminal
Protein sequence:
MNRQIANILENYLGRYPSLNEYHTLKSQYRNIQKVNIFNKDIFISLLRKNKKKFFSDLVCTQSDIKHSVLSYFSKQENTYSIGKLYTIIELQTILVTTYTDVLGVLTTKGPDIFSSTIYYNISSIKKLATDIVHAMMITTVSDKIMGRHNVSSLVGNVNTLMEEYLRRHNKNCICYGSYSLHLLNPDVRYGDIDILQTNSRTFLIDLAFLIKFITGYNVVLLKVPYLKNYMVLKDHNDNHIIDSFNIRQDTMETIPKILIDNIYIVDPVLQLMSMLKMFSQIDRLEDIVKNPDKVIIRLATLLEYVRINYGIILNGDHGNMPMLSTFNHDQRIITVQTNMYNFPFKKCFIYLDENTLSRDILHLNADDAVDFENVSNSAYLIHNDTMYTYFSNTILLRSENEIHEISTRAISAHILLYQILTKGDIIQPLSDIINSLISIEKCTIYKVIQRDKKTGKHGIIDIEKDIITH

Annotated regions:
phrase: SSIKKLATDIVHAMMITTVSDKIMGRHNVSSLVGNVNTLMEEYLRRHNKNCICYGSYSLHLLNPDVRYGDIDILQTNSRTFLIDLAFLIKFITGYNVVLLKVPYLKNYMVLKDHNDNHIIDSFNIRQDTMETIPKILIDNIYIVDP
type: DOMAIN
name: PolyA_pol_nucTrfase_Poxvir
description: Poly(A) polymerase, nucleotidyltransferase domain, Poxvirus

phrase: LMSMLKMFSQIDRLEDIVKNPDKVIIRLATLLEYVRINYGIILNGDHGNMPMLSTFNHDQRIITVQTNMYNFPFKKCFIYLDENTLSRDILHLNADDAVDFENVSNSAYLIHNDTMYTYFSNTILLRSENEIHEISTRAISAHILLYQILTKGDIIQPLSDIINSLISIEKCTIYKVIQRDKKTGKHGIIDIEKDIIT
type: DOMAIN
name: Poxvirus_polyA_pol_cat_C
description: Poxvirus poly(A) polymerase, catalytic subunit, C-terminal

phrase: MNRQIANILENYLGRYPSLNEYHTLKSQYRNIQKVNIFNKDIFISLLRKNKKKFFSDLVCTQSDIKHSVLSYFSKQENTYSIGKLYTIIELQTILVTTYTDVLGVLT
type: DOMAIN
name: Poxvirus_polyA_pol_cat_N
description: Poxvirus poly(A) polymerase, catalytic subunit, N-terminal
Protein sequence:
MKIVFATHNPNKLKEVKQLLPSSIELLSLDDIGCFDEIPETGDTLEENAKIKADYVTNNYGHSCFSDDTGLLIEALNGAPGVYSARYAGGQKNAKDNMTKVLTELKGKTNREAHFKTVIHLNLEGGSHIFEGIVNGSITENVVGVRGFGYDPIFKPKGFAETFGELPAKTKNSISHRGRAVQKLIAFLKTQTL

Annotated regions:
Protein sequence:
MIYIDNRQNKIKVDEEFENKIKEIIDYALKEEKVNIDYEISVIFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGEVFKDVYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKAIMRQREEEILKSFNLHR

Annotated regions:
phrase: HSVLHLLGYD
type: CONSERVED_SITE
name: YbeY_CS
description: Endoribonuclease YbeY, conserved site
Protein sequence:
METSICSPENRYSHPYKPYDIQIQLMDAIYDTIDNGYKIGLFESPTGTGKTLSIICSTMTWLRDYKRENVFQPMAGLDGSDTDDSDSDDEPEWVKKAYRDTIVSRSENKMVDYEMYLEKIQNEYENNIQTAGSIKSSRPPKKKRSTAKKQELHDEDFLPEDYYSDSEVKPNADKLTVLESEISQLLDKVNGRTDEIEMTNDCPVNIYFSSRTHSQLNQFAHQLALTKFQSSFKGVEERTKYLPIGSRKQLCINEKVKSFSKNDSNINDVCVDLQKSKEGCQFLPKDYLNSSLTKKLSDLSLSKIHDIEEIADLGSNMKVCPYYSVRKGVEMTEIISLPYQILLSESTRAILNLQIEDSIVVIDEAHNLMDTITSMHSVCITIGEMNSIIKALKFYLGRFLKKLNSGNRIHLMKLIKLCQLVISFIQKSEKCNNIKVGNEINTSDIYQNSTGDMLNIHILEAFLAKSKIAYKIESYMEKVAENENEQAKTSSSNPLLYKIVQFLKCLVNPSKEGKFFWDSTNGITSIKYMLLDPSSVFKDIVSKARCVILCGGTMEPMSEFKNFLFPYVEDKKIKSFSCNHIIPPDNLKVYPVSSQNNVTLEFSFDNRNNPLMIEALGASIVRICQSVPDGVVVFFPSYKYMNHILSIWKSTDVLTQIESQKKLFEEPTSASQVQTILADYANTIKEEKKGAILFSVVGGKMSEGINFADELGRAVVMVGLPYPNAYSGEIIAKRKFIESEAIARGCSMSEAQRNSQSYYENLCMRAVNQSIGRSIRHINDYSIIYLVDCRYQSSRIQNKLSSWVRKRIETRNYNMDQIMEETRDFFMCKTIARLA

Annotated regions:
phrase: IVRICQSVPDGVVVFFPSYKYMNHILSIWKSTDVLTQIESQKKLFEEPTSASQVQTILADYANTIKEEKKGAILFSVVGGKMSEGINFADELGRAVVMVGLPYPNAYSGEIIAKRKFIESEAIARGCSMSEAQRNSQSYYENLCMRAVNQSIGRSIRHINDYSIIYLVDCRYQSSRIQNKLSSWVR
type: DOMAIN
name: ATP-dep_Helicase_C
description: ATP-dependent helicase, C-terminal

phrase: PENRYSHPYKPYDIQIQLMDAIYDTIDNGYKIGLFESPTGTGKTLSIICSTMTWLRDYKRENVFQPMAGLDGSDTDDSDSDDEPEWVKKAYRDTIVSRSENKMVDYEMYLEKIQNEYENNIQTAGSIKSSRPPKKKRSTAKKQELHDEDFLPEDYYSDSEVKPNADKLTVLESEISQLLDKVNGRTDEIEMTNDCPVNIYFSSRTHSQLNQFAHQLALTKFQSSFKGVEERTKYLPIGSRKQLCINEKVKSFSKNDSNINDVCVDLQKSKEGCQFLPKDYLNSSLTKKLSDLSLSKIHDIEEIADLGSNMKVCPYYSVRKGVEMTEIISLPYQILLSESTRAILNLQIEDSIVVIDEAHNLMDTITSMHSVCITIGEMNSIIKALKFYLGRFLKKLNSGNRIHLMKLIKLCQL
type: DOMAIN
name: Helic_SF1/SF2_ATP-bd_DinG/Rad3
description: Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type

phrase: YKYMNHILSIWKSTDVLTQIESQKKLFEEPTSASQVQTILADYANTIKEEKKGAILFSVVGGKMSEGINFADELGRAVVMVGLPYPNAYSGEIIAKRKFIESEAIARGCSMSEAQRNSQSYYENLCMRAVNQSIGRSIRHINDYSIIYLVDCRYQ
type: DOMAIN
name: ATP-dep_Helicase_C
description: ATP-dependent helicase, C-terminal

phrase: NRYSHPYKPYDIQIQLMDAIYDTIDNGYKIGLFESPTGTGKTLSIICSTMTWLRDYKRENVFQPMAGLDGSDTDDSDSDDEPEWVKKAYRDTIVSRSENKMVDYEMYLEKIQNEYENNIQTAGSIKSSRPPKKKRSTAKKQELHDEDFLPEDYYSDSEVKPNADKLTVLESEISQLLDKVNGRTDEIEMTNDCPVNIYFSSRTHSQLNQFAHQLALTKFQSSFKGVEERTKYLPIGSRKQLCINEKVKSFSKNDSNINDVCVDLQKSKEGCQFLPKDYLNSSLTKKLSDLSLSKIHDIEEIADLGSNMKVCPYYSVRKGVEMTEIISLPYQILLSESTRAILNLQIEDSIVVIDEAHNLMDTITSMHSVCITIGEMNSIIKALKFYLGRFLKKLNSGN
type: DOMAIN
name: Helicase-like_DEXD_c2
description: Helicase-like, DEXD box c2 type

phrase: SIVVIDEAH
type: CONSERVED_SITE
name: DNA/RNA_helicase_DEAH_CS
description: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

phrase: FSSRTHSQLNQFAHQLALTKFQSSFKGVEERTKYLPIGSRKQLCINEKVKSFSKNDSNINDVCVDLQKSKEGCQFLPKDYLNSSLTKKLSDLSLSKIHDIEEIADLGSNMKVCPYYSVRKGVEMTEIISLPYQILLSESTRAILNLQIEDSIVVIDEAHNLMDTITSMHSVCI
type: DOMAIN
name: RAD3-like_helicase_DEAD
description: RAD3-like helicase, DEAD
Protein sequence:
MAVILAAGLGTRMKSSLPKVLHPISGLPMVGHVLRAVNACRVSEKVTIVGKGADLVKHELADQCQFVIQDQQLGTGHAVLQAKELLQDKPGNTLVVCGDTPLLKGSTLNDLFTYHETSQSKATILTAEIDDPKGYGRVIRDQNGGVIRIVEEKDAKDSERLVREINTGTYIFDNQALFQALEQVGNDNAQGEYYLPDVISILTNQSEKVSAYVMEDVSESLGVNDRLALSKAQLLINRRLVEDHMRQGVTFTHPDSVYLEVDVTIGSDTVVEAGVQLKGKTSIGKGCLIGAHSEIDCCVIGEGVQIRQSFLEHSQIAKQVTIGPFAHLRPHSNLGEGVHIGNFVEVKNATLHAETKAGHLAYIGDAELGESVNVGCGVIFCNYDGKKKHHSKIGDQVFLGSNSNIVSPVVVGDRSVIAAGSTITDDIDSESLGIARSRQVNKADYWHKFNTNK

Annotated regions:
phrase: AVILAAGLGTRMKSSLPKVLHPISGLPMVGHVLRAVNACRVSEKVTIVGKGADLVKHELADQCQFVIQDQQLGTGHAVLQAKELLQDKPGNTLVVCGDTPLLKGSTLNDLFTYHETSQSKATILTAEIDDPKGYGRVIRDQNGGVIRIVEEKDAKDSERLVREINTGTYIFDNQALFQALEQVGNDNAQGEYYLPDVISILTNQSEKVSAYVME
type: DOMAIN
name: NTP_transferase_dom
description: Nucleotidyl transferase domain

phrase: GVTFTHPDSVYLEVDVTIGSDTVVEAGVQLKGKTSIGKGCLIGAHSEIDCCVIGEGVQIRQSFLEHSQIAKQVTIGPFAHLRPHSNLGEGVHIGNFVEVKNATLHAETKAGHLAYIGDAELGESVNVGCGVIFCNYDGKKKHHSKIGDQVFLGSNSNIVSPVVVGDRSVIAAGSTITDDIDSESLGIARSR
type: DOMAIN
name: GlmU_C_LbH
description: GlmU, C-terminal LbH domain

phrase: LGSNSNIVSPVVVGDRSVIAAGSTITDD
type: CONSERVED_SITE
name: Hexapep_transf_CS
description: Hexapeptide transferase, conserved site

phrase: HSQIAKQVTIGPFAHLRPHSNLGEGVHIGNFVEVK
type: REPEAT
name: Hexapep
description: Hexapeptide repeat

phrase: DVTIGSDTVVEAGVQLKGKTSIGKGCLIGAHSE
type: REPEAT
name: Hexapep
description: Hexapeptide repeat

phrase: HSKIGDQVFLGSNSNIVSPVVVGDRSVIAAGSTI
type: REPEAT
name: Hexapep
description: Hexapeptide repeat
Protein sequence:
MNTLTFVTGNANKLREVKAILCDGNEDAVIGNWNITNKAVDLDEIQGSVEEVTRHKAEQAAKLIGNAVLVEDTCLCFESLGGLPGPYIKWFVKNVGLDGINKMLDGFDNRKAYAITTFGFCSGPGCEVLLFQGITNGEIVSQKGNTGFGWDAIFQPDGFDRTYAEMAGIEKNRISQRSKALAKVKEFLEKV

Annotated regions:
Protein sequence:
MGGGDYWPIIIRHCCFYLVFSIAFVGYIVFAYYKNLHLNTTMKLIALLCILIWLSQPGLNRPLSIFYMKQNLPRTYTPPIRELEYWCTYGKHCDFCWECRNGICKNKVWDDMPLIKQNDYISQCSIARYFDRCMYFIKPKTPYIHYMDCSQPTAYKGFSH

Annotated regions:
Protein sequence:
MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTQRHPKLLGTIYTAAEEIEAAGGKALPCVVDVRDEQQINSAVEKAVERFGGIDILVNNASAISLTNTLETPTKRVDLMMSVNTRGTYLTSKACIPFLKKSKVAHILNLSPPLNLNPMWFKQHCAYTIAKYGMSMCVLGMAEEFRGEIAVNALWPRTAIHTAAMDMLGGAGVESQCRKVDIIADAAYSIFKRPKSFTGNFIIDENILKEEGIKDFDIYAITPGHPLLPDFFLDEHPDAVMEEKESYDPVPEVKEEKLQLQEQPQLQEQPQLQEKPQLQEQPQLQEKPQLQEQPQLQEQPQLQEQPQQQPQLQEQPQLQEKPQLQEQPQQQEKPQPQQQPQQQPQQRPQQRPQPQPQPQPLLQSVLPPKPHFGAVEETFRIVKDSLSDEVVRATQAVYQFELSGEDGGTWFLDLKSKGGKVGHGEPSDRADVVMSMATEDFVKMFSGKLKPTMAFMSGKLKIKGNIALAIKLEKLMTHMNSRL

Annotated regions:
phrase: KDSLSDEVVRATQAVYQFELSGEDGGTWFLDLKSKGGKVGHGEPSDRADVVMSMATEDFVKMFSGKLKPTMAFMSGKLKIKGNIALAIKLEKL
type: DOMAIN
name: SCP2_sterol-bd_dom
description: SCP2 sterol-binding domain
Protein sequence:
MMLDVAPPRFRVEEEDERHGIFVAEPLPRGLGHTLGNALRRVMLSGLPGAAVTKLRIEGVQHEFSTIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDAYIASLSEGGHLDMTLTVERGQGYVPAEQNKSDADPIGVIAVDSLFSPVEKVQYRVSETRAGARVDLDALTLEVFTDGRLGPREALREASRKLIDFFGLFAEGYQGAGAAEEPGRSGGRPVITDERPIEDLELTVRSYNCLKREGVDTIGQLATMTEEELMNIRNLGMKSVDEIRSKLEEYGYTLESGRE

Annotated regions:
phrase: EPLPRGLGHTLGNALRRVMLSGLPGAAVTKLRIEGVQHEFSTIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDAYIASLSEGGHLDMTLTVERGQGYVPAEQNKSDADPIGVIAVDSLFSPVEKVQYRVSETRAGARVDLDALTLEVFTDGRLGPREALREASRKLI
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: HGIFVAEPLPRGLGHTLGNALRRVMLSGLPGAAVTKLRIEGVQHEFSTIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDAYIASLSEGGHLDMTLTVERGQGYVPAEQNKSDADPIGVIAVDSLFSPVEKVQYRVSETRAGARVDLDALTLEVFTDGRLGPREALREASRKLIDFFGLFAE
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: RIEGVQHEFSTIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDAYIASLSEGGHLDMTLTVERGQGYVPAEQNKSDADPIGVIAVDSLF
type: DOMAIN
name: DNA-dir_RNA_pol_insert
description: DNA-directed RNA polymerase, insert domain

phrase: ERPIEDLELTVRSYNCLKREGVDTIGQLATMTEEELMNIRNLGMKSVDEIRSKLE
type: DOMAIN
name: RNAP_asu_C
description: RNA polymerase, alpha subunit, C-terminal
Protein sequence:
MTKEFHHVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSAKLRVVRKIHK

Annotated regions:
Protein sequence:
MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL

Annotated regions:
phrase: LIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPN
type: DOMAIN
name: HATPase_dom
description: Histidine kinase/HSP90-like ATPase domain

phrase: AELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDK
type: DOMAIN
name: Sig_transdc_His_kin_internal
description: Signal transduction histidine kinase, internal region

phrase: IPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQ
type: DOMAIN
name: HATPase_dom
description: Histidine kinase/HSP90-like ATPase domain

phrase: IRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLV
type: DOMAIN
name: Sig_transdc_His_kinase_LytS_TM
description: Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region

phrase: IPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYI
type: DOMAIN
name: YpdA-like_HATPase
description: Sensor histidine kinase YpdA-like, ATPase domain

phrase: ESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIIST
type: DOMAIN
name: GAF
description: GAF domain
Protein sequence:
MFIRNVKLIKPSPVRFISPIPFSFPISRSIKISSIRYFTNKSTSNFKSTSSSSSLKSTSTSTSTSTSKTTPKTLSKPPPKVKPPIQDNDTTSSGSSSSENSESFMLKSLFKTIWPKNNLNFKIRVIIALSLLVGAKILNVQVPFYFKQIIDTMNIDWTNEVGVFSTVIGSLILAYGGARFGAVLFGELRNAIFASVAQSAIRRVAYNTFVKLLNMDLQFHLSRQTGGLTRAIDRGTKGISYVLSAMVFHIIPITLEISIVCGILTYNYGASFAAMTFVTMLAYSIFTIQTTAWRTKFRRQANNADNQAANVALDSLINYESVKIFNNELYQASKYDKALMKYQQSSVKIATSLAFLNSGQNFIFTSALTAMMYMGCQGVYTGELTVGDLVLINQLVFQLSVPLNFLGSVYRELKQSLLDMENLFQLQNQPIRIKEIPNAPPLKLNNNNNNNNNNNNNNNNSLPGEIRFENVSFGYHPDRPILNNASFTIPAGQKVAIVGPSGSGKSTILRLIFRFYDINQGRILIDGQDISKVSLESLRKLIGIVPQETPLFNDTILENIRYGRLDASDEEIYRVINQVQLNKLIDDLPDGVQTIVGERGMMISGGEKQRLAMARLLLKRAPITFFDEATSALDTHTEQALLKTIRSVFKQQHQTNVSIAHRLRTIADADKIIVLNKGQVVEEGTHWQLLNEQPNSLYAQLWNIQENLDIEKELLQGDEEEEELTEKLKLDKQELEQEAKLFNSQTFEKK

Annotated regions:
phrase: AGQKVAIVGPSGSGKSTILRLIFRFYDINQGRILIDGQDISKVSLESLRKLIGIVPQETPLFNDTILENIRYGRLDASDEEIYRVINQVQLNKLIDDLPDGVQTIVGERGMMISGGEKQRLAMARLLLKRAPITFFDEATSALDTHTEQALLKTIRSVFKQQHQTNVSIAHRLRTIADADKIIVLNKG
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: LNNASFTIPAGQKVAIVGPSGSGKSTILRLIFRFYDINQGRILIDGQDISKVSLESLRKLIGIVPQETPLFNDTILENIRYGRLDASDEEIYRVINQVQLNKLIDDLPDGVQTIVGERGMMISGGEKQRLAMARLLLKRAPITFFDEAT
type: DOMAIN
name: ABC_transporter-like_ATP-bd
description: ABC transporter-like, ATP-binding domain

phrase: IRFENVSFGYHPDRPILNNASFTIPAGQKVAIVGPSGSGKSTILRLIFRFYDINQGRILIDGQDISKVSLESLRKLIGIVPQETPLFNDTILENIRYGRLDASDEEIYRVINQVQLNKLIDDLPDGVQTIVGERGMMISGGEKQRLAMARLLLKRAPITFFDEATSALDTHTEQALLKTIRSVFKQQHQTNVSIAHRLRTIADADKIIVLNKGQVVEEGTHWQLLNEQPNSLYAQL
type: DOMAIN
name: ABC_transporter-like_ATP-bd
description: ABC transporter-like, ATP-binding domain

phrase: ISGGEKQRLAMARL
type: CONSERVED_SITE
name: ABC_transporter-like_CS
description: ABC transporter-like, conserved site

phrase: VIIALSLLVGAKILNVQVPFYFKQIIDTMNIDWTNEVGVFSTVIGSLILAYGGARFGAVLFGELRNAIFASVAQSAIRRVAYNTFVKLLNMDLQFHLSRQTGGLTRAIDRGTKGISYVLSAMVFHIIPITLEISIVCGILTYNYGASFAAMTFVTMLAYSIFTIQTTAWRTKFRRQANNADNQAANVALDSLINYESVKIFNNELYQASKYDKALMKYQQSSVKIATSLAFLNSGQNFIFTSALTAMMYMGCQGVYTGELTVGDLVLINQLVFQLSVP
type: DOMAIN
name: ABC1_TM_dom
description: ABC transporter type 1, transmembrane domain

phrase: IIALSLLVGAKILNVQVPFYFKQIIDTMNIDWTNEVGVFSTVIGSLILAYGGARFGAVLFGELRNAIFASVAQSAIRRVAYNTFVKLLNMDLQFHLSRQTGGLTRAIDRGTKGISYVLSAMVFHIIPITLEISIVCGILTYNYGASFAAMTFVTMLAYSIFTIQTTAWRTKFRRQANNADNQAANVALDSLINYESVKIFNNELYQASKYDKALMKYQQSSVKIATSLAFLNSGQNFIFTSALTAMMYMGCQGVYTGELTVGDLVLINQLVFQLSVPLNFLGSVYRELK
type: DOMAIN
name: ABC1_TM_dom
description: ABC transporter type 1, transmembrane domain
Protein sequence:
MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIVISTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVKVMLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATKGHWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV

Annotated regions:
phrase: ITQELAEICSGAA
type: CONSERVED_SITE
name: ATP_synth_F1_gsu_CS
description: ATP synthase, F1 complex, gamma subunit conserved site
Protein sequence:
MRRPKKYESGEATQYISRRAALRKLQLSLNDFRRLCILKGVYPREPKHRRRAQKGSSEIRVLYHTKDIRFLLHEQIVWTLRDYKIFAKKSNRDRAIKDFRNLKRRLALFPEIKLDHIVKERYPTFIDALKDLDDCLTLLFLFSTFPSLHLIPREQSNLCRRLTVEFLHYVIASKSLRKVFISIKGYYFQAEIKGQKVTWIVPHYYPFKPQSRQEVDFKVMSIFVEFYTIMLGFTNFRLFHGLNLAYPPQFPTNMLQDNEDTFKDESSFVSDRIAALNFELLRTDKVQEDEEELDIDMELLEQDGDSKRIIKMKQEAQEVARLRTLFKGLKFFINREVPREPLVIIIRSFGGKVSWDSSIFPGSTFDESDETITHQIVDRPSLATQYISRDYIQPQWLFDCVNQRQLLPTNKYFIGEKLPPHLSPFVDSKRDTYIPPEEKALHDPSLIETHEQSDDDSDEEAAQEEEEAVDQELLDAQLQLAYQQETAEYKKYGGPDGVNEDEEDPEEDEEDEDEEEEEELDEQAKRLKEEKQKMSVQSGKVHKVNKRQLHKAEVDEHRLQARMVKPRHRNLFRKLIREKQTKEKEEWLLRKKRRTFEAGEKEARKTAKRAARKEAAAAAAKASKLGK

Annotated regions:
phrase: RTLFKGLKFFINREVPREPLVIIIRSFGGKVSWDSSIFPGSTFDESDETITHQIVDRPSLATQYISRDYIQPQWLFDCVNQ
type: DOMAIN
name: BRCT_dom
description: BRCT domain

phrase: TLFKGLKFFINREVPREPLVIIIRSFGGKVSWDSSIFPGSTFDESDETITHQIVDRPSLATQYISRDYIQPQWLFDCVNQRQLLPTNK
type: DOMAIN
name: BRCT_dom
description: BRCT domain

phrase: RLRTLFKGLKFFINREVPREPLVIIIRSFGGKVSWDSSIFPGSTFDESDETITHQIVDRPSLATQYISRDYIQPQWLFDCVNQRQLLPTNKYF
type: DOMAIN
name: BRCT_dom
description: BRCT domain
Protein sequence:
MSKVDHEKIQQAVVMILEAIGEDPAREGLEDTPKRVAKMYEEVFAGLNQDPKEHFATIFGEDHEELVLVKDIPFFSMCEHHLVPFFGKAHVGYIPKGGKVTGLSKLARAVEAVARRPQLQERITSTVADALVETLEPHGVIVVVEAEHMCMTMRGVKKPGAATVTSAVRGTFANDAAARAEVLSLIKG

Annotated regions:
phrase: ELVLVKDIPFFSMCEH
type: CONSERVED_SITE
name: GTP_CycHdrlase_I_CS
description: GTP cyclohydrolase I, conserved site

phrase: ARRPQLQERI
type: CONSERVED_SITE
name: GTP_CycHdrlase_I_CS
description: GTP cyclohydrolase I, conserved site

phrase: IQQAVVMILEAIGEDPAREGLEDTPKRVAKMYEEVFAGLNQDPKEHFATIFGEDHEELVLVKDIPFFSMCEHHLVPFFGKAHVGYIPKGGKVTGLSKLARAVEAVARRPQLQERITSTVADALVETLEPHGVIVVVEAEHMCMTMRGVKKPGAATVTSAVRGTFANDAAARAEVLSL
type: DOMAIN
name: GTP_CycHdrlase_I_dom
description: GTP cyclohydrolase I domain
Protein sequence:
MSRRHRAEKREINPDPKFGDLVVTKFMNAIMLDGKKSVAESIVYGAFEAVQSKLKQEPVAVFHSALDNIAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLIAAARKRNETTMVDRLCGELMDAANNRGSAVKKREDTHKMADANRAFSHYRW

Annotated regions:
phrase: SRRHRAEKREINPDPKFGDLVVTKFMNAIMLDGKKSVAESIVYGAFEAVQSKLKQEPVAVFHSALDNIAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLIAAARKRNETTMVDRLCGELMDAANNRGSAVKKREDTHKMADAN
type: DOMAIN
name: Ribosomal_uS7_dom
description: Small ribosomal subunit protein uS7 domain

phrase: DLVVTKFMNAIMLDGKKSVAESIVYG
type: CONSERVED_SITE
name: Ribosomal_uS7_CS
description: Small ribosomal subunit protein uS7, conserved site
Protein sequence:
MSKQRIYEYAKELNLKSKEIIDELKSMNIEVSNHMQALEDDQIKALDKKFKKEQKNDNKQSTQNNHQKSNNQNQNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKNNKPQSQPAAPKEIPSKVTYQEGITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEEDLSIYFEDEKDDPEAIERPAVVTIMGHVDHGKTTLLDSIRHTKVTAGEAGGITQHIGAYQIENDGKKITFLDTPGHAAFTTMRARGAQVTDITILVVAADDGVMPQTIEAINHAKEAEVPIIVAVNKIDKPTSNPDRVMQELTEYGLIPEDWGGETIFVPLSALSGDGIDDLLEMIGLVAEVQELKANPKNRAVGTVIEAELDKSRGPSASLLVQNGTLNVGDAIVVGNTYGRIRAMVNDLGQRIKTAGPSTPVEITGINDVPQAGDRFVVFSDEKQARRIGESRHEASIVQQRQESKNVSLDNLFEQMKQGEMKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR

Annotated regions:
phrase: QQRQESKNVSLDNLFEQMKQGEMKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEI
type: DOMAIN
name: TIF_IF2_dom3
description: Translation initiation factor IF- 2, domain 3

phrase: PAVVTIMGHVDHGKTTLLDSIRHTKVTAGEAGGITQHIGAYQIENDGKKITFLDTPGHAAFTTMRARGAQVTDITILVVAADDGVMPQTIEAINHAKEAEVPIIVAVNKIDKPTSNPDRVMQELTEYGLIPEDWGGETIFVPLSALSGDGIDDLLEM
type: DOMAIN
name: Small_GTP-bd
description: Small GTP-binding domain

phrase: VTIMGHVDHGKTTLLDSIRHTKVTAGEAGGITQHIGAYQIENDGKKITFLDTPGHAAFTTMRARGAQVTDITILVVAADDGVMPQTIEAINHAKEAEVPIIVAVNKIDKPTSNPDRVMQELTEYGLIPEDWGGETIFVPLSALSGDGIDDLLEM
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: MSKQRIYEYAKELNLKSKEIIDELKSMNIEVSNHMQALEDDQIKALDKKFK
type: DOMAIN
name: IF2_N
description: Translation initiation factor IF-2, N-terminal

phrase: EGITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGV
type: DOMAIN
name: IF2_N
description: Translation initiation factor IF-2, N-terminal

phrase: ERPAVVTIMGHVDHGKTTLLDSIRHTKVTAGEAGGITQHIGAYQIENDGKKITFLDTPGHAAFTTMRARGAQVTDITILVVAADDGVMPQTIEAINHAKEAEVPIIVAVNKIDKPTSNPDRVMQELTEYGLIPEDWGGETIFVPLSALSGDGIDDLLEMIGLVAEVQEL
type: DOMAIN
name: T_Tr_GTP-bd_dom
description: Translational (tr)-type GTP-binding domain

phrase: AVGTVIEAELDKSRGPSASLLVQNGTLNVGDAIVVGNTYGRIRAMVNDLGQRIKTAGPSTPVEITGINDVPQAGDRFV
type: DOMAIN
name: EF-G-like_DII
description: Elongation factor G-like, domain II

phrase: RAVGTVIEAELDKSRGPSASLLVQNGTLNVGDAIVVGNTYGRIRAMVNDLGQRIKTAGPSTPVEITGINDVPQAGDRFVVFSDEKQARRIGESRH
type: DOMAIN
name: IF2_II
description: Translation initiation factor IF-2, domain II
Protein sequence:
MKAVVLGSGVVGLMSAWYLQKSGYQVTVVDRQARSAEETSFANAGQISYGYSSPWAAPGIPQKALRWLMEEHAPLKIKPSLDPQLLKWATQMLANCQLSRYQVNKARMLAIANHSRECLSQLRQEHDIEYQGRQQGTLQIFRTQKQLIAIEKDIALLEQSGTRYQRMSVDECIKQEPGLAAVSHKLTGGLYLPDDETGDCYLFCQQMTELAQQQGVTFLFNTNVKKVNAQGNQVVSVSTDAGELQADVYVVAMGSYSTALLAQLGITIPVYPVKGYSLTVPITDESQAPVSTVMDETYKVALTRFDDRIRVAGTAELAGFDPAIPEKRKATISMVVNDLFPHSGDFAKAEFWTGFRPMTPDGTPLIGKTPLKNLYTNTGHGTLGWTMACGSGHLLSQIITGEQSENQAGLDLFRYAS

Annotated regions:
phrase: AVVLGSGVVGLMSAWYLQKSGYQVTVVDRQARSAEETSFANAGQISYGYSSPWAAPGIPQKALRWLMEEHAPLKIKPSLDPQLLKWATQMLANCQLSRYQVNKARMLAIANHSRECLSQLRQEHDIEYQGRQQGTLQIFRTQKQLIAIEKDIALLEQSGTRYQRMSVDECIKQEPGLAAVSHKLTGGLYLPDDETGDCYLFCQQMTELAQQQGVTFLFNTNVKKVNAQGNQVVSVSTDAGELQADVYVVAMGSYSTALLAQLGITIPVYPVKGYSLTVPITDESQAPVSTVMDETYKVALTRFDDRIRVAGTAELAGFDPAIPEKRKATISMVVNDLFPHSGDFAKAEFWTGFRPMTPDGTPLIGKTPLKNLYTNTGHGTLGWTMACGSGHLLS
type: DOMAIN
name: FAD-dep_OxRdtase
description: FAD dependent oxidoreductase
Protein sequence:
MQGSVTEFLRPRLVGIETVSPRRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDIIEILLNLKGLAVILEGKNEAVLTVTKSGEGPVTAADIQHDGDVTIANPDHVICTLTGEGSISMRIKVEMGRGYVPASARRDAEEEDRAIGRLLVDASFSPVVRIAYDVDSARVEQRTDLDKLVLDMETNGTLDPEEAIRRASTILAEQLDAFVELRDIKEVEQVEEKPLFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRAEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPESIVDND

Annotated regions:
phrase: VEIDGVLHEYSSKEGVQEDIIEILLNLKGLAVILEGKNEAVLTVTKSGEGPVTAADIQHDGDVTIANPDHVICTLTGEGSISMRIKVEMGRGYVPASARRDAEEEDRAIGRLLVDASF
type: DOMAIN
name: DNA-dir_RNA_pol_insert
description: DNA-directed RNA polymerase, insert domain

phrase: RAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDIIEILLNLKGLAVILEGKNEAVLTVTKSGEGPVTAADIQHDGDVTIANPDHVICTLTGEGSISMRIKVEMGRGYVPASARRDAEEEDRAIGRLLVDASFSPVVRIAYDVDSARVEQRTDLDKLVLDMETNGTLDPEEAIRRASTILAEQLDAFVE
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: EPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDIIEILLNLKGLAVILEGKNEAVLTVTKSGEGPVTAADIQHDGDVTIANPDHVICTLTGEGSISMRIKVEMGRGYVPASARRDAEEEDRAIGRLLVDASFSPVVRIAYDVDSARVEQRTDLDKLVLDMETNGTLDPEEAIRRASTILAEQ
type: DOMAIN
name: DNA-dir_RNA_pol_RpoA/D/Rpb3
description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type

phrase: DPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRAEVELLKTPNLGKKSLTEIKDVL
type: DOMAIN
name: RNAP_asu_C
description: RNA polymerase, alpha subunit, C-terminal
Protein sequence:
MGQKVHPYGFRLGYNKNWLSRWFSKKDYPEFVFEDNKIRKFVKKSLYHAGISKIEIERAGGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFSREFTVEVNEIRRPEIDAQLVAENIALQLERRVAFRRAMKRTVGLSRKFGAEGIKVSCAGRLAGAEIARSEWYRDGRVPLQTLRADIDYGYAIAKTTYGVIGVKVWIFKGEILDHEVEA

Annotated regions:
phrase: AGGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFSREFTVEVNEIRRPEIDAQLVAENIALQL
type: DOMAIN
name: KH_dom
description: K Homology domain

phrase: ARSEWYRDGRVPLQTLRADIDYGYAIAKTTYGVI
type: CONSERVED_SITE
name: Ribosomal_uS3_CS
description: Small ribosomal subunit protein uS3, conserved site

phrase: IRKFVKKSLYHAGISKIEIERAGGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFSREFTVEVNEI
type: DOMAIN
name: KH_dom_type_2
description: K Homology domain, type 2

phrase: KIRKFVKKSLYHAGISKIEIERAGGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFSREFTVEVNEIRRP
type: DOMAIN
name: KH_dom_type_2
description: K Homology domain, type 2

phrase: IALQLERRVAFRRAMKRTVGLSRKFGAEGIKVSCAGRLAGAEIARSEWYRDGRVPLQTLRADIDYGYAIAKTTYGVIGVKVW
type: DOMAIN
name: Ribosomal_uS3_C
description: Small ribosomal subunit protein uS3, C-terminal