Protein sequence:
MGAATSALNRRQLDKFEHIRLRPTGKKKYQIKHLIWAGKEMERFGLHERLLESEEGCKKIIEVLYPLEPTGSEGLKSLFNLVCVLFCVHKDKEVKDTEEAVAIVRQCCHLVEKERNAERNTTETSSGQKKNDKGVTVPPGGSQNFPAQQQGNAWIHVPLSPRTLNAWVKAVEEKKFGAEIVPMFQALSEGCTPYDINQMLNVLGDHQGALQIVKEIINEEAAQWDIAHPPPAGPLPAGQLRDPRGSDIAGTTSTVQEQLEWIYTANPRVDVGAIYRRWIILGLQKCVKMYNPVSVLDIRQGPKEAFKDYVDRFYKAIRAEQASGEVKQWMTESLLIQNANPDCKVILKGLGMHPTLEEMLTACQGVGGPSYKAKVMAEMMQNMQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQVNFFRVWPVDGSETQKFSRRYSWGGANCAPSTESIRPCKEAPAAICRQGEAVEGTKEKTTSSESRLDRGIFFELPLWRRPIKTVYIEGVPIRALLDTGADDTIIKEADLQLSGTWKPKIIGGIGGGLNVKEYSDREVRLEDKILRGTILIGSTPINIIGRNILAPAGAKLVMGQLSEQIPITPVKLKEGARGPFLKQWPLSKEKIKALQEICDQLEKEGKISKIGGENAYNTPVFCIKKKDKSQWRMLVDFRELNKATQDFFEVQLGIPHPSGFEKMTEITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQNTAASILEEIKKELKPLTIVQYMDDLWVGSQEDEYTHDRLVEQLRMKLSAWGLETPDKKVQKKPPYEWMGYKLWPHKWQISSIELEDKEEWTVNDIQRLVGKLNWAAQLYPGLRTKNLCKLIRGKKNLLETVTWTEEAEAEYAENKEILKTEQEGTYYKPGRPIRAAVQKLEGGQWSYQFKQEGQVLKVGKYTKQKNTHTNEFRVLAGLVQKLCKESLVIWGELPVLELPIEREVWEQWWADYWQVSWIPDWEFVSTPPLVKLWYTLTKEPIPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIKMALEDSGPNVNIVTDSQYAMGILTAQPTQSDSPLIEQIIALMVQKHQIYLQWVPADKGIGGNEEIDKLVSQGMRKILFLEKIEEAQEEHERYHNNWRNLADTYGLPQIVAKEIVAMCPKCQIKGEPVHGQVDASPGVWQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPNFTSQEVAAMCWWGKIEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMACHIHNFKRKGGIGGLTPAERLINMITTQLELQHLQTKIQKILNFRVYYREGRDPVWKGPGQLIWKGEGAVVIKGGVELKEYPRRKAKIIKDYEPRKRMGDESNLEGAGGADN

Annotated regions:
phrase: EKIEEAQEEHERYHNNWRNLADTYGLPQIVAKEIVAMCPKC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: GAATSALNRRQLDKFEHIRLRPTGKKKYQIKHLIWAGKEMERFGLHERLLESEEGCKKIIEVLYPLEPTGSEGLKSLFNLVCVLFCVHKDKEVKDTEEAVAIVRQCCHLVEKERNAERNTTETSSGQKKNDKGVTVPPGGSQN
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: VYYREGRDPVWKGPGQLIWKGEGAVVIKGGVELKEYPRRKAKI
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: FRVYYREGRDPVWKGPGQLIWKGEGAVVIKGGVELKEYPRRKAKIIK
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: AQEEHERYHNNWRNLADTYGLPQIVAKEIVAMCPKC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: RCLKCGKPGHLAKDC
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: IPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIKMALEDSGPNVNIVTDSQYAMGILTAQPTQSDSPLIEQIIALMVQKHQIYLQWVPADKGIGGNEEIDKLVSQGM
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: ASPGVWQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPNFTSQEVAAMCWWGKIEHTTGVPYN
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: IELEDKEEWTVNDIQRLVGKLNWAAQLYPGLRTKNLCKLIRGKKNLLETVTWTEEAEA
type: DOMAIN
name: RVT_thumb
description: Reverse transcriptase thumb

phrase: ATSALNRRQLDKFEHI
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: RPTGKKKYQIKHLIWAGK
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: ERFGLHERLLESEEG
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: TGSEGLKSLFNLVCVLFCV
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: HKDKEVKDTEEAV
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: IRALLDTGADDTIIKEADLQLSGTWKPKIIGGIGGGLNVKEYSDREVRLEDKILRGTILIGSTPINIIGRN
type: DOMAIN
name: Peptidase_A2_cat
description: Peptidase A2A, retrovirus, catalytic

phrase: ALLDTGADDTI
type: ACTIVE_SITE
name: Aspartic_peptidase_AS
description: Aspartic peptidase, active site

phrase: DVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIKMALEDSGPNVNIVTDSQYAMGILTAQPTQSDSPLIEQIIALMVQKHQIYLQWVPADKGIGGNEEIDKLVSQG
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: EGKISKIGGENAYNTPVFCIKKKDKSQWRMLVDFRELNKATQDFFEVQLGIPHPSGFEKMTEITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQNTAASILEEIKKELKPLTIVQYMDDLWVGSQEDEYTHDRLVEQLRMKLSAWGLETPDKKVQKKPPYEWMGYK
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: VDASPGVWQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPNFTSQEVAAMCWWGKIEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMACHIHNFKRKGGIGGLTPAERLINM
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: RCLKCGKPGHLAKDC
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KCYNCGKFGHMQRQCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KCYNCGKFGHMQRQCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: RCLKCGKPGHLAKDCR
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: KCYNCGKFGHMQRQCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: WRRPIKTVYIEGVPIRALLDTGADDTIIKEADLQLSGTWKPKIIGGIGGGLNVKEYSDREVRLEDKILRGTILIGSTPINIIGRNILAPAGAK
type: DOMAIN
name: Retropepsins
description: Retropepsins

phrase: IKKKDKSQWRMLVDFRELNKATQDFFEVQLGIPHPSGFEKMTEITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQNTAASILEEIKKELKPLTIVQYMDDLWVGSQEDEYTHDRLVEQLRMKLSAWGLETPDKKVQKKPPYEWMGYK
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: YYKPGRPIRAAVQKLEGGQWSYQFKQEGQVLKVGKYTKQKNTHTNEFRVLAGLVQKLCKESLVIWGELPVLELPIEREVWEQWWADYWQVSWIPDWEFVS
type: DOMAIN
name: RVT_connect
description: Reverse transcriptase connection

phrase: MYNPVSVLDIRQGPKEAFKDYVDRFYKAIRAEQASGEVKQWMTESLLIQNANPDCKVILKGLGMHPTLEEMLT
type: DOMAIN
name: Gag_p24_C
description: Retroviral nucleocapsid Gag protein p24, C-terminal domain