nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MIELPVVPSASDRKSKPDWLRVKLPIGKEYTKLRALVDEHKLHTICQSGNCPNMGECWGAGTATFMILGNVCTRSCSFCAVATGRPTEYDIDEPKRVAEAVRLMNVKHCVITSVNRDELKDKGAEVWYQTVVRVKEESPQTTIETLIPDVKSDWASLERMISGGQEVVSHNMETVERLYRRVRPQAKYSRSLEEIQRIKAFGKRTKSGIMLGLGETKDEVLKAMDDLVAHGLDVLTLGQYLQPTKMHLEVAEFIHPDQFAEYKEIGLSKGLNYVESGPLVRSSYHAEKHI

Annotated regions:
phrase: MILGNVCTRSCSFCAVATGRPTEYDIDEPKRVAEAVRLMNVKHCVITSVNRDELKDKGAEVWYQTVVRVKEESPQTTIETLIPDVKSDWASLERMISGGQEVVSHNMETVERLYRRVRPQAKYSRSLEEIQRIKAFGKRTKSGIMLGLGETKDEVLKAMDD
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: SDRKSKPDWLRVKLPIGKEYTKLRALVDEHKLHTICQSGN
type: DOMAIN
name: LIAS_N
description: Lipoyl synthase, N-terminal

phrase: WGAGTATFMILGNVCTRSCSFCAVATGRPTEYDIDEPKRVAEAVRLMNVKHCVITSVNRDELKDKGAEVWYQTVVRVKEESPQTTIETLIPDVKSDWASLERMISGGQEVVSHNMETVERLYRRVRPQAKYSRSLEEIQRIKAFGKRTKSGIMLGLGETKDEVLKAMDDLVAHGLDVLTLGQYLQPTKMHLEVAEFIHPDQFAEYKEIGLSKGL
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: TATFMILGNVCTRSCSFCAVATGRPTEYDIDEPKRVAEAVRLMNVKHCVITSVNRDELKDKGAEVWYQTVVRVKEESPQTTIETLIPDVKSDWASLERMISGGQEVVSHNMETVERLYRRVRPQAKYSRSLEEIQRIKAFGKRTKSGIMLGLGETKDEVLKAMDDLVAHGLDVLTLGQYLQPTKMHLEVAEFIHPDQFAEYKE
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: ASDRKSKPDWLRVKLPIGKEYTKLRALVDEHKLHTICQSGNCPNMGECWGAGTATFMILGNVCTRSCSFCAVATGRPTEYDIDEPKRVAEAVRLMNVKHCVITSVNRDELKDKGAEVWYQTVVRVKEESPQTTIETLIPDVKSDWASLERMISGGQEVVSHNMETVERLYRRVRPQAKYSRSLEEIQRIKAFGKRTKSGIMLGLGETKDEVLKAMDDLVAHGLDVLTLGQYLQPTKMHLEVAEFIHPDQFAEYKEIGLSKGLNYVESGPLVRSSYHAEK
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MSGIHDFTLASARDALKARKISAVELTNAHIDAIERLDGQLNSFITRTPDQAREAAKASDEALAKGEGGSLCGIPLGIKDLFCTNGVRTTAASKILGNFVPPYESTVTANLLKDGAVFLGKLNLDEFAMGSANLTSAFGPVENPWKRKDSDAKLVPGGSSGGSAAAVAAGLVLGATGTDTGGSIRQPAAFTGIAGIKPTYGRCSRFGTIAFASSLDQAGPMARNLQDCAILLESMAGFDPRDSTSVDTPVPHYEAALKRGVKGLRVGIPKEYHVEGMPAEIEALWQQGMTWLRDVGAEIVEVSLPHTKYGLPTYYIAALAEASSNLARYDGVRFGERVSASTLDGLYEASRAAGFGDEVKRRILIGTHVLSSGYYDAYYLRAQKVRTLIQQDFLKAFENVDVLLTPTAPSGAFAQDEKPTDPVQMYLNDVFTVPASMAGVPALSVPAGLDARGVPLGLQLIGKFFDEETLIAAGHAIEQAAAFHHRPTIHAGVSA

Annotated regions:
phrase: GGSSGGSAAAVAAGLVLGATGTDTGGSIRQP
type: CONSERVED_SITE
name: Amidase_CS
description: Amidase, conserved site

phrase: ELTNAHIDAIERLDGQLNSFITRTPDQAREAAKASDEALAKGEGGSLCGIPLGIKDLFCTNGVRTTAASKILGNFVPPYESTVTANLLKDGAVFLGKLNLDEFAMGSANLTSAFGPVENPWKRKDSDAKLVPGGSSGGSAAAVAAGLVLGATGTDTGGSIRQPAAFTGIAGIKPTYGRCSRFGTIAFASSLDQAGPMARNLQDCAILLESMAGFDPRDSTSVDTPVPHYEAALKRGVKGLRVGIPKEYHVEGMPAEIEALWQQGMTWLRDVGAEIVEVSLPHTKYGLPTYYIAALAEASSNLARYDGVRFGERVSASTLDGLYEASRAAGFGDEVKRRILIGTHVLSSGYYDAYYLRAQKVRTLIQQDFLKAFENVDVLLTPTAPSGAFAQDEKPTDPVQMYLNDVFTVPASMAGVPALSVPAGLDARGVPLGLQLIGKFFDEET
type: DOMAIN
name: Amidase_dom
description: Amidase signature domain
Protein sequence:
MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLEELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSARLAKQLYERISSESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW

Annotated regions:
phrase: GTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLEELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSARLAKQLYERISSESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIA
type: DOMAIN
name: DhaK_dom
description: DhaK domain

phrase: EGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLEELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSARLAKQLYERISSESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDT
type: DOMAIN
name: DhaK_dom
description: DhaK domain

phrase: MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLEELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSARLAKQLYERISSESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIA
type: DOMAIN
name: DhaK_1
description: Dihydroxyacetone kinase DhaK, subunit 1
Protein sequence:
MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRIGSGIYGYLPLMWKVIQRITAIVRDELNTAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSLAGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEMDQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGTYAANQEKAISTPSKAIPLEGASMELISTPDETSIDVLCRSHGWHQSQLIKVLLFIARLDDGVEQPLLISLRGDQDLNEVKLINAVGRLSGQEVLDCRPIQTEDLNKQGIDTIPLGFIGPDLDDGVLRSARSWTKQFLRCTDSTAAAMDRMVCGANQPDQHRLYATWADLGGAPKSLDLRKARAGEACVHNPEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGCYGIGISRLAQAAVEQHHDDAGICWPAAIAPYEAIVVVANMQDQTQAELGESLYKQLLAAGVDALFDDRKERAGVKFKDADLIGIPWRVVVGRDASDGVVELVERANRAVQKLPHADALKELLRTLRP

Annotated regions:
phrase: FHLEDRQGRELGLGPTHEEVVTSLAGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEMDQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGTYAANQEKAISTPSKAIPLEGASMELISTPDETSIDVLCRSHGWHQSQLIKVLLFIARLDDGVEQPLLISLRGDQDLNEVKLINAVGRLSGQEVLDCRPIQTEDLNKQGIDTIPLGFIGPDLDDGVLRSARSWTKQFLRCTDSTAAAMDRMVCGANQPDQHRLYATWADLGGAPKSLDLRKARAGEACVHNPEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGCYGIGISRLAQAAVEQ
type: DOMAIN
name: aa-tRNA-synt_IIb
description: Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)

phrase: RRIGSGIYGYLPLMWKVIQRITAIVRDELNTAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSLAGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEMDQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGTYAANQEKAISTPSKAIPLEGASMELISTPDETSIDVLCRSHGWHQSQLIKVLLFIARLDDGVEQPLLISLRGDQDLNEVKLINAVGRLSGQEVLDCRPIQTEDLNKQGIDTIPLGFIGPDLDDGVLRSARSWTKQFLRCTDSTAAAMDRMVCGANQPDQHRLYATWADLGGAPKSLDLRKARAGEACVHNPEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGCYGIGISRLAQAAVEQHHDDAGICW
type: DOMAIN
name: aa-tRNA-synth_II
description: Aminoacyl-tRNA synthetase, class II

phrase: PYEAIVVVANMQDQTQAELGESLYKQLLAAGVDALFDDRKERAGVKFKDADLIGIPWRVVVGRDASDGVVELVERANRAVQKLPHADALKEL
type: DOMAIN
name: ProRS_anticodon_short
description: Proline--tRNA ligase, anticodon binding domain

phrase: VVVANMQDQTQAELGESLYKQLLAAGVDALFDDRKERAGVKFKDADLIGIPWRVVVGRDASDGVVELVERANRAVQKLPHADALKEL
type: DOMAIN
name: Anticodon-bd
description: Anticodon-binding

phrase: EAEIASHQLLLRGGYIRRIGSGIYGYLPLMWKVIQRITAIVRDELNTAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSLAGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEMDQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTA
type: DOMAIN
name: ProRS_core_prok
description: Prokaryote proline-tRNA ligase core domain
Protein sequence:
MGPYLSQPKREKVTTSGEGKSVIFAASEMQGWRNTMEDAHIHRPDIVQDVSVFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEDALKETFLKMDELLMTPEGAKELNNYKATDTDESYAGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLKK

Annotated regions:
phrase: AASEMQGWRNTMEDAHIHRPDIVQDVSVFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEDALKETFLKMDELLMTPEGAKELNNYKATDTDESYAGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDT
type: DOMAIN
name: PPM-type_phosphatase-like_dom
description: PPM-type phosphatase-like domain

phrase: VIFAASEMQGWRNTMEDAHIHRPDIVQDVSVFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEDALKETFLKMDELLMTPEGAKELNNYKATDTDESYAGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVY
type: DOMAIN
name: PPM-type_phosphatase-like_dom
description: PPM-type phosphatase-like domain

phrase: IFAASEMQGWRNTMEDAHIHRPDIVQDVSVFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEDALKETFLKMDELLMTPEGAKELNNYKATDTDESYAGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVY
type: DOMAIN
name: PPM-type_phosphatase-like_dom
description: PPM-type phosphatase-like domain

phrase: VTTSGEGKSVIFAASEMQGWRNTMEDAHIHRPDIVQDVSVFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEDALKETFLKMDELLMTPEGAKELNNYKATDTDESYAGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTIL
type: DOMAIN
name: PPM-type_phosphatase-like_dom
description: PPM-type phosphatase-like domain

phrase: VFGVFDGH
type: BINDING_SITE
name: PP2C_BS
description: PPM-type phosphatase, divalent cation binding
Protein sequence:
MGKTVASLGQGTRPDPVRSFNRWKKKHSHRQHQKKERRKQLKKPEWQVEREGISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKEVFNVSKLPITEYALSLGLAVAPRIRFLQKLEKQPSTELVKNPVTEAVPPRAPSLPNDEADESPAYVSEKMSVLHKSGERLEETEHRLASGDGDEEQDEETEDEETEDHLGKAREPHTESVVSIEEAQKVKEVSVQFLNRDDDDEDGPDADFLTVKRRDVFGLDLKENEALSKKEPSKSSVKKKLTKVAEAKKVMKRSFKVNKKITFTDEGELVQQWPQIQKCAIKDVEEEDDTGGINLDKAKERLQEEDKFDKEEYRKKIKAKHRERRLKEREARREANKRQAKARDEEEAFLDWSDEDDGGFDPSTLPDPDKHRSSEESESEDTNHKMSDTKKKQETRKRNNTEDDDVRPRSRHGKKAKWETVEPLDTGLSLAEDEELVLHLLKSQN

Annotated regions:
phrase: QYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARY
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: KISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKL
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: DVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKEVFNVSKLPITEYALSLGLAVAPRIR
type: DOMAIN
name: SPB4-like_CTE
description: ATP-dependent rRNA helicase SPB4-like, C-terminal extension

phrase: QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQ
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain

phrase: TRFSDFPLSKKTLKGLQEAQYRLVTEIQ
type: DOMAIN
name: RNA_helicase_DEAD_Q_motif
description: RNA helicase, DEAD-box type, Q motif

phrase: VLDEADRI
type: CONSERVED_SITE
name: RNA-helicase_DEAD-box_CS
description: ATP-dependent RNA helicase DEAD-box, conserved site

phrase: DQDLKERAQRCFVSYIRSVYLMKDKEVFNVSKLPITEYALSLGLAVAPR
type: DOMAIN
name: SPB4-like_CTE
description: ATP-dependent rRNA helicase SPB4-like, C-terminal extension

phrase: TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKD
type: DOMAIN
name: DEAD/DEAH_box_helicase_dom
description: DEAD/DEAH box helicase domain

phrase: KISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR
type: DOMAIN
name: Helicase_C-like
description: Helicase, C-terminal domain-like

phrase: IGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEY
type: DOMAIN
name: Helicase_ATP-bd
description: Helicase superfamily 1/2, ATP-binding domain
Protein sequence:
MSIEEIPQGADVNVIPKNEKKARELIKKLNLKQIKGISRVTFKQRGNLIYAIDSPDVYRSAAGTYVVFGEAKVDDMNQRIAEAQAQQAQQEALQKAAADAGKTEDKSPEAITADLEKASLGDKKAEDEEEDEGEIDETGLDPKDIEIVVEQTQVSRAKAVKALRNHDGDMVNAIMDLS

Annotated regions:
phrase: EKKARELIKKLNLKQIKGISRVTFKQRGNLIYAIDSPDVYRSAAGTYVVFGEAK
type: DOMAIN
name: Nas_poly-pep-assoc_cplx_dom
description: Nascent polypeptide-associated complex NAC domain

phrase: PKNEKKARELIKKLNLKQIKGISRVTFKQRGNLIYAIDSPDVYRSAAGTYVVFGEAKVDDMNQR
type: DOMAIN
name: Nas_poly-pep-assoc_cplx_dom
description: Nascent polypeptide-associated complex NAC domain

phrase: LDPKDIEIVVEQTQVSRAKAVKALRNHDGDMVNAIMD
type: DOMAIN
name: NAC-like_UBA
description: Nascent polypeptide-associated complex subunit alpha-like, UBA domain

phrase: EKKARELIKKLNLKQIKGISRVTFKQRGNLIYAIDSPDVYRSAAGTYVVFGEAKV
type: DOMAIN
name: Nas_poly-pep-assoc_cplx_dom
description: Nascent polypeptide-associated complex NAC domain
Protein sequence:
MAGGRRGGRAKRRKVCYFTSNGITHIDYKDVDLLRKFVSERGKILPRRVTGTNAKYQRKLTIAIKRARQMALLPYVTGE

Annotated regions:
phrase: IDYKDVDLLRKFVSERGKILPRR
type: CONSERVED_SITE
name: Ribosomal_bS18_CS
description: Small ribosomal subunit protein bS18, conserved site
Protein sequence:
MEEFQGYFELDRSRQHDFLYPLLFREYIYALAHDHGLNRSILFKNAGYDKKSSSIVVKRLITRMYQQNPLIFSANDSIQNPFFGHNKNLYSQIISEGFAVIVEIPFSLRLVSSLERKEIAKSHNLRSIHSIFPFLEDKFSHLDYVSDVLIPYHIHLEILVQTLRYWVKDASSLHLLRFFLHEYWNSLITPKKHITLFSKGNPRLFLFLYNSHICEYESIFLFLRNQSSHLRSTSSGIFFERIYFYVKIEHFAKVFFDNDFQCILWFFKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVTLWQYHFYAWFQPVRIDINQLCKYSLDFLGYRSSVRLNSSVVRSQMLENSFLINNAMKKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRADSSDSDIIDRFLRICRNLSHYHSGSSKKKSLYRVKYILRLSCVKTLARKHKRTVRTFFKRLGSEFLEEFLTEEEVVLSLIFPRTYSTSRRLYRGPIWYLDITSINDLVNYENE

Annotated regions:
phrase: MEEFQGYFELDRSRQHDFLYPLLFREYIYALAHDHGLNRSILFKNAGYDKKSSSIVVKRLITRMYQQNPLIFSANDSIQNPFFGHNKNLYSQIISEGFAVIVEIPFSLRLVSSLERKEIAKSHNLRSIHSIFPFLEDKFSHLDYVSDVLIPYHIHLEILVQTLRYWVKDASSLHLLRFFLHEYWNSLITPKKHITLFSKGNPRLFLFLYNSHICEYESIFLFLRNQSSHLRSTSSGIFFERIYFYVKIEHFAKVFFDNDFQCILWFFKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVTLWQYHFYAWFQPVRIDINQLCKYSLDFL
type: DOMAIN
name: Maturase_MatK_N
description: Maturase MatK, N-terminal domain

phrase: KKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRADSSDSDIIDRFLRICRNLSHYHSGSSKKKSLYRVKYILRLSCVKTLARKHKRTVRTFFKRLGSEFLEEFLTEEEVVLSLIFPRTY
type: DOMAIN
name: Domain_X
description: Domain X
Protein sequence:
MGSLGAILKHPEDFYPLLKLKIAARHAEKQIPSEPHWAFCYSMLHKVSRSFGLVIQQLGPQLRDAVCIFYLVLRALDTVEDDTSISTEVKVPILMAFHRHIYDNDWHFSCGTKEYKVLMDEFHHVSNAFLDLGSGYKEAIEDITMRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGAEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLEDLKYEENSAKAVQCLNDMVTDALVHAEDCLKYMSDLRGPAIFRFCAIPQIMAIGTLALCFNNTQVFRGVVKMRRGLTAKVIDQTKTMSDVYGAFFDFSCLLKSKVDNNDPNATKTLSRLEAIQKICKNSGALTTKRKSYIIENESGYNSTLIIILFIILAILYAYLSSNLPNSL

Annotated regions:
phrase: YCHYVAGLVGLGLSK
type: CONSERVED_SITE
name: Squalene/phytoene_synthase_CS
description: Squalene/phytoene synthase, conserved site

phrase: MGLFLQKTNIIRDYLEDINEIPKSRMFW
type: CONSERVED_SITE
name: Squalene/phytoene_synthase_CS
description: Squalene/phytoene synthase, conserved site

phrase: AFCYSMLHKVSRSFGLVIQQLGPQLRDAVCIFYLVLRALDTVEDDTSISTEVKVPILMAFHRHIYDNDWHFSCGTKEYKVLMDEFHHVSNAFLDLGSGYKEAIEDITMRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGAEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLEDLKYEENSAKAVQCLNDMVTDALVHAEDCLKYMSDLRGPAIFRFCAIPQIMAIGTLALCFNNTQVFRGVVKMRRGLTA
type: DOMAIN
name: Trans_IPPS_HH
description: Trans-isoprenyl diphosphate synthases, head-to-head
Protein sequence:
MSKPIQMERGVKYRDADKMALIPIKNMPTEQKEVLRKPEWMKIKLPADSQRIQDIKAAMRKNNLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHLPVERYVPPAEFDELKEIALELGFTHAACGPFVRSSYHADLQAKGLEVK

Annotated regions:
phrase: TATFMILGAICTRRCPFCDVAHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHLPVERYVPPAEFDELKEIAL
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: FNHGTATFMILGAICTRRCPFCDVAHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHLPVERYVPPAEFDELKEIALELGF
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: NMPTEQKEVLRKPEWMKIKLPADSQRIQDIKAAMRKNNLHSVCEEAS
type: DOMAIN
name: LIAS_N
description: Lipoyl synthase, N-terminal

phrase: ILGAICTRRCPFCDVAHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGLGETKEEIVEVLKD
type: DOMAIN
name: rSAM
description: Radical SAM
Protein sequence:
MRIAIYPGSFDPVTYAHLDIARRATRIFDRVIMAVFDRPQKRLLFSTAERLQLLQAVTADLVNVEATSYEMLTVEFARQVGACAIVRGLRAGSDFEAEFQMAQVNQTIDPNIEVVVLMAGRQFAHISSTAVREMASLGRDPVEFTPPVVVAALREKFAQRG

Annotated regions:
phrase: IYPGSFDPVTYAHLDIARRATRIFDRVIMAVFDRPQKRLLFSTAERLQLLQAVTADLVNVEATSYEMLTVEFARQVGACAIVRGLRAGSDFEAEFQMAQVNQTIDPNIEVVVLMAGRQFAHISSTAVR
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain

phrase: IAIYPGSFDPVTYAHLDIARRATRIFDRVIMAVFDRPQKRLLFSTAERLQLLQAVTADL
type: DOMAIN
name: Cyt_trans-like
description: Cytidyltransferase-like domain
Protein sequence:
MLTIADTTFSSHLIMGTGGATSHEALERALVASGTELTTVAMRRHAGTRGGESIFDLLRRLDIAPLPNTAGCRTAREAVLTARMAREALGTTWVKVEVIADEHTLLPDVVETLDATELLAAEGFTVLAYTSDDPVAAQRLEDAGAAAVMPLGAPIGTGLGILNPHNLELICSRASVPVLVDAGIGTASDAALAMELGCSGVLLASAVNRCQNPEAMATAMRHAVEAGRLARSAGRIPEREHAQASSTFEGLASWADQVL

Annotated regions:
phrase: TIADTTFSSHLIMGTGGATSHEALERALVASGTELTTVAMRRHAGTRGGESIFDLLRRLDIAPLPNTAGCRTAREAVLTARMAREALGTTWVKVEVIADEHTLLPDVVETLDATELLAAEGFTVLAYTSDDPVAAQRLEDAGAAAVMPLGAPIGTGLGILNPHNLELICSRASVPVLVDAGIGTASDAALAMELGCSGVLLASAVNRCQNPEAMATAMRHAVEAGRLARSAGRIPEREHAQAS
type: DOMAIN
name: Thiazole_synthase_ThiG
description: Thiazole synthase ThiG
Protein sequence:
MKKNLHIIILALSIFINLLFIYIFISEVKPNLNLNLSFILTAAVIVVTYLLFKNKFSELMPVNYNNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKARLEILKVHTRNKPLDESVSLSELARKTHGMTGAHLAAMCNEAAILAVMKNKSKIGKEEFEEALERVIAGLKKKNPSVLEKERNIAAYHEAGHALIGKILNVNTIEKISIVPRGEALGYVLNFPKEDAFLLTKTELKNKITMLLGGRASEEIIFNEISTGAENDLKEATKIAYQMVCNYGMSELGNRVFDLHMLKSTEIVDKEIDKIINSCYILAKKILLENKHKVIAIAEKLLEKESITKEELETLWEEENTLCV

Annotated regions:
phrase: IPKGILFYGPPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEALLRPGRFDRTIHIGAP
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: EKERNIAAYHEAGHALIGKILNVNTIEKISIVPRGEALGYVLNFPKEDAFLLTKTELKNKITMLLGGRASEEIIFNEISTGAENDLKEATKIAYQMVCNYGMSELGNRVFDLHMLKSTEIVDKEIDKIINSCYILAKKILLENKHKVIAIAEKLLEKESITKEELE
type: DOMAIN
name: Peptidase_M41
description: Peptidase M41

phrase: SVSLSELARKTHGMTGAHLAAMCNEAAILAVMKNKSKIGKEEFE
type: DOMAIN
name: AAA_lid_3
description: AAA ATPase, AAA+ lid domain

phrase: ILFYGPPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEALLRPGRFDRTIHI
type: DOMAIN
name: ATPase_AAA_core
description: ATPase, AAA-type, core

phrase: IIVIGATNRIDMLDEALL
type: CONSERVED_SITE
name: ATPase_AAA_CS
description: ATPase, AAA-type, conserved site
Protein sequence:
MLKHSSAATKENDSPKLKVLDIVSKLEPSLDHSHTHWWKLTSPQLALMLEAADYSIEKQFETLLFHYHWVVPYLGPKPDADGNFKWRSLVSDVGIPLEYSWKWDTATSGPDVRLTIEPINELSGTRVDPLNQAPSLELLHRLAEILPRLDVSWASHFLSTFYDHDKLKYIKESESETGMPLRSTMLVCFEFGRNGITTKTYMSPRKLGQQGFAPLSDYHSAIAALGPSCALDAVTEFLNNSPEGPHLSPFMLAVDNIIPCSSRLKLYFATPRTSYNSIREVLTLGGRLSTVTLESKLRAIHELVKAIMPFPPDLPDDADIPFPEQVLSPTVQDLAESSDMANQRPAFVAGYQYYFDIAPGASLPDIKFYIPIRKAQMNDQAVATGLTNWMRAQGRGAFCNAYTRVLEGLAGGRDLSKCHGLHTHICVMLKGNGEFDVTSYLAPGCK

Annotated regions:
Protein sequence:
MFSHKFICGSLTKMTETGITFDPPVYEQRYCATIQILEDARWKDQIKKVVEFGCAEMRFFQLMRRIETIEHIGLVDIDKSLLMRNLTSVNPLVSDYIRSRASPLKVQILQGNVADSSEELRDTDAVIAIELIEHVYDDVLAKIPVNIFGFMQPKLVVFSTPNSDFNVIFTRFNPLLPNGFRHEDHKFEWSRDEFKNWCLGIVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIFVRKDMLEMQLVNPLVSKPNIDKESIPYKLIHTVEYPFYVDTRTEKEKLWTEVQIELQRFKRQFESSEIEEGTYQDTCNMPIAFLLDRLEHVGATKERIEELLLENNLTVENECVLIVSSDQESEWSDPYKFSDRSSQDDALVDQEQEEERWDQGPES

Annotated regions:
Protein sequence:
MSNNGVNALPATGDLCDLTIVGGGPTGIFAAFQCGMNNMSCRIIESMPQLGGQLTALYPEKHIYDVAAFNEVQASGLVDSLWTQAGRYNPEVVLNDQAVSFKKLDDGSFVVMSAAGASFRSRALLIAAGLGAFTPRTLPQLGDVSHLEGSSLFYSVTSRNDFEGKRVVIVGGGDSALDWTMGLLPLAERVTVVHRMASFQGHGKTAHEVLDAREDGKIEVHFNTEVASLETSGSCLRRVCTRSKSGHEEVIDADCLLLLIGFKSNLGPIAQWGLELQDNAIVVDNQMKTSVDGLYAAGDIASYPGKLKIIQTGLSDATMAVRHSLSYIKPGEKIRHQFSSVKMAKEKK

Annotated regions:
phrase: DLTIVGGGPTGIFAAFQCGMNNMSCRIIESMPQLGGQLTALYPEKHIYDVAAFNEVQASGLVDSLWTQAGRYNPEVVLNDQAVSFKKLDDGSFVVMSAAGASFRSRALLIAAGLGAFTPRTLPQLGDVSHLEGSSLFYSVTSRNDFEGKRVVIVGGGDSALDWTMGLLPLAERVTVVHRMASFQGHGKTAHEVLDAREDGKIEVHFNTEVASLETSGSCLRRVCTRSKSGHEEVIDADCLLLLIGFKSNLGPIAQWGLELQDNAIVVDNQMKTSVDGLYAAGDIASYPGKLKIIQTGLSDATMAV
type: DOMAIN
name: FAD/NAD-binding_dom
description: FAD/NAD(P)-binding domain
Protein sequence:
MTSSLPSGQTSVLLQMTQRLALSDAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLRGQTVYALSKDKA

Annotated regions:
phrase: KRDMVYNRLVRRL
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: FINALTTNLTAF
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: RVWSAAASTGEEPYSIAITL
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: ASDIDTEVLEKARSGI
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: FDAIFCRNVMIYFD
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: DILRRFVPLLKPDGLLFAGHSEN
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: DAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLRGQTVYAL
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: NLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLRGQTV
type: DOMAIN
name: CheR_C
description: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal

phrase: QMTQRLALSDAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLRGQTVYALSK
type: DOMAIN
name: CheR_MeTrfase
description: MCP methyltransferase, CheR-type

phrase: HFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEA
type: DOMAIN
name: CheR_N
description: Chemotaxis receptor methyltransferase CheR, N-terminal
Protein sequence:
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIESVEKSCFQKGYTLILGNAWNDLEKQRAYLSMMAQKRVDGLLVMCSEYPDSVLSMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFQGGYIAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMQAMKEAHISVPENWIVQGDFEPESGYRAMQQILNQQHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISLIGYDNVRNARYFSPALTTIHQPKDSLGEAAFNMLLDRIVNKREESQSIEVHPRLVERRSVADGPFVDYRR

Annotated regions:
phrase: KDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSL
type: DOMAIN
name: HTH_LacI
description: LacI-type HTH domain

phrase: TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSP
type: DOMAIN
name: HTH_LacI
description: LacI-type HTH domain

phrase: ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLK
type: DOMAIN
name: HTH_LacI
description: LacI-type HTH domain

phrase: MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSE
type: DOMAIN
name: HTH_LacI
description: LacI-type HTH domain

phrase: TIKDVAKRAN
type: DOMAIN
name: HTH_LacI
description: LacI-type HTH domain

phrase: VSTTTVSHVI
type: DOMAIN
name: HTH_LacI
description: LacI-type HTH domain

phrase: RYLIERGHREIGVIPGPLERNTGAGRLAGFMQAMKEAHISVPENWIVQGDFEPESGYRAMQQILNQQHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISLIGYDNVRNARYFSPALTTIHQPKDSLGEAAFNMLLDRIVNKREESQSIEVHPRLVERRS
type: DOMAIN
name: LacI/GalR-like_sensor
description: Transcriptional regulator LacI/GalR-like, sensor domain