Protein sequence:
MGARGSVLSGKKTDELEKVRLRPGGKKRYMLKHIVWAVNELERFGLAESRLGSKEGCRKIRKVLGPLVPTGSENLKSLYNTVCVIFCLHAEEKVKDTEEAKKIAQRHLAADTEKMPAMSKPSKPTSRLAYPVQQIAGNYSHLPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDQQHPSPGPMPAGQLREPRGSDIAGTTSTVEEQIQWMYRPQNPVPVGNIYRRWIQLGLQKCVRMYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALTPSTNPFAAAQPRAGKRTVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKCPERQAGFLRVRPLGKEASQFPRPGTPGDSAICAPDEPSIRHDTSGCDSICTPCRSSRGDAKELHATREEAEGEQRETLQGGDRGFAAPQFSLWRRPVVKATIEGQSVEVLLDTGADDSIVAGIELGSNYTPKIVGGIGGFINTNEYKNVEIEVVGKRVRATVMTGDTPINIFGRNILNSLGMTLNFPVARIEPVKVQLKPEKDGPKIRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNSPTFAIKKKDKNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLASKKRITVLDVGDAYFSVPLDPDFRQYTAFTLPAVNNAEPGKRYLYKVLPQGWKGSPAIFQYTMAKVLDPFRKANNDVTIIQYMDDILVASDRSDLEHDRVVSQLKELLNNMGFSTPEEKFQKDPPFKWMGYELWPKKWKLQKIQLPEKEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAEFQENKIILEQEQEGSYYKEGVPLEATVQKNLANQWTYKIHQGDKILKVGKYAKVKNTHTNGVRLLAHVVQKIGKEALVIWGEIPMFHLPVERETWDQWWTDYWQVTWIPEWDFVSTPPLIRLAYNLVKDPLEGVETYYTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQDSGPQVNIIVDSQYVMGIVAAQPTETESPIVREIIEEMIKKEKIYVGWVPAHKGLGGNQEVDHLVSQGIRQILFLEKIEPAQEEHEKYHNNVKELVHKFGIPQLVARQIVNSCDKCQQKGEAIHGQVNSELGTWQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQDVKMAAWWIGIEQTFGVPYNPESQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMATHCMNFKRRGGIGDMTPAERIVNMITTEQEIQFLQTKNLKFQNFRVYYREGRDQLWKGPGDLLWKGEGAVIIKVGTEIKVIPRRKAKIIRNYGGGKELDCSADVEDTMQAREVAQSN

Annotated regions:
phrase: FRVYYREGRDQLWKGPGDLLWKGEGAVIIKVGTEIKVIPRRKAKIIR
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral

phrase: TCWNCGKAGHTARQCK
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: GCWKCGQQGHIMSKCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: LQKIQLPEKEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAEF
type: DOMAIN
name: RVT_thumb
description: Reverse transcriptase thumb

phrase: TCWNCGKAGHTARQC
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: GCWKCGQQGHIMSKCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: LEGVETYYTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQDSGPQVNIIVDSQYVMGIVAAQPTETESPIVREIIEEMIKKEKIYVGWVPAHKGLGGNQEVDHLVSQGI
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: LGTWQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQDVKMAAWWIGIEQTFGVPYN
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: RGSVLSGKKTDELEKV
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: RPGGKKRYMLKHIVWAVN
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: ERFGLAESRLGSKEG
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: TGSENLKSLYNTVCVIFCL
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: HAEEKVKDTEEAK
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: VKATIEGQSVEVLLDTGADDSIVAGIELGSNYTPKIVGGIGGFINTNEYKNVEIEVVGKRVRATVMTGDTPINIFGRNI
type: DOMAIN
name: Retropepsin-like_cat_dom
description: Retropepsin-like catalytic domain

phrase: EGQLEEAPPTNPYNSPTFAIKKKDKNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLASKKRITVLDVGDAYFSVPLDPDFRQYTAFTLPAVNNAEPGKRYLYKVLPQGWKGSPAIFQYTMAKVLDPFRKANNDVTIIQYMDDILVASDRSDLEHDRVVSQLKELLNNMGFSTPEEKFQKDPPFKWMGYE
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: EKIEPAQEEHEKYHNNVKELVHKFGIPQLVARQIVNSCDKC
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: CWNCGKAGHTARQC
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: IKKKDKNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLASKKRITVLDVGDAYFSVPLDPDFRQYTAFTLPAVNNAEPGKRYLYKVLPQGWKGSPAIFQYTMAKVLDPFRKANNDVTIIQYMDDILVASDRSDLEHDRVVSQLKELLNNMGFSTPEEKFQKDPPFKWMGYE
type: DOMAIN
name: RT_dom
description: Reverse transcriptase domain

phrase: MYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLT
type: DOMAIN
name: Gag_p24_C
description: Retroviral nucleocapsid Gag protein p24, C-terminal domain

phrase: YYKEGVPLEATVQKNLANQWTYKIHQGDKILKVGKYAKVKNTHTNGVRLLAHVVQKIGKEALVIWGEIPMFHLPVERETWDQWWTDYWQVTWIPEWDFVS
type: DOMAIN
name: RVT_connect
description: Reverse transcriptase connection

phrase: VLLDTGADDSI
type: ACTIVE_SITE
name: Aspartic_peptidase_AS
description: Aspartic peptidase, active site

phrase: CWKCGQQGHIMSKCP
type: DOMAIN
name: Znf_CCHC
description: Zinc finger, CCHC-type

phrase: VEVLLDTGADDSIVAGIELGSNYTPKIVGGIGGFINTNEYKNVEIEVVGKRVRATVMTGDTPINIFGRN
type: DOMAIN
name: Peptidase_A2_cat
description: Peptidase A2A, retrovirus, catalytic

phrase: WRRPVVKATIEGQSVEVLLDTGADDSIVAGIELGSNYTPKIVGGIGGFINTNEYKNVEIEVVGKRVRATVMTGDTPINIFGRNILNSLGMT
type: DOMAIN
name: Retropepsins
description: Retropepsins

phrase: AQEEHEKYHNNVKELVHKFGIPQLVARQIVNSCDKCQ
type: DOMAIN
name: Integrase_Zn-bd_dom_N
description: Integrase, N-terminal zinc-binding domain

phrase: QVNSELGTWQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQDVKMAAWWIGIEQTFGVPYNPESQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMATHCMNFKRRGGIGDMTPAERIVNM
type: DOMAIN
name: Integrase_cat-core
description: Integrase, catalytic core

phrase: TYYTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQDSGPQVNIIVDSQYVMGIVAAQPTETESPIVREIIEEMIKKEKIYVGWVPAHKGLGGNQEVDHLVSQG
type: DOMAIN
name: RNaseH_domain
description: Ribonuclease H domain

phrase: GARGSVLSGKKTDELEKVRLRPGGKKRYMLKHIVWAVNELERFGLAESRLGSKEGCRKIRKVLGPLVPTGSENLKSLYNTVCVIFCLHAEEKVKDTEEAKKIAQRHLAADTEKMPAMS
type: DOMAIN
name: Lentvrl_matrix_N
description: Immunodeficiency lentiviral matrix, N-terminal

phrase: VYYREGRDQLWKGPGDLLWKGEGAVIIKVGTEIKVIPRRKAKI
type: DOMAIN
name: Integrase_C_retrovir
description: Integrase, C-terminal, retroviral