nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
LVSTPWIELFNAFPSLLRHFPGSHNTIFKNMTEQRKFILEEIKKHQESLDLNNPQDFIDYFLIKMEKEKHNKHSEFTMDNLITTVWDVFSAGTETTSLTLRYGLLLLLKHPEVTAKVQEEIDRVVGRNRSPCMQDRSRMPYTDAVLHEIQRYIDLVPSNLPHVATQDVKFREYLIPKGTAILTSLTSVLHDGKEFPNPGQFDPAHFLDESGNFKKTDHFMAFSAGKRVCVGEGLARMELFLLLVSILQHFTLKPVVDPKHIDIAPSFKGMLSIPPFCEMCFIPV

Annotated regions:
phrase: FSAGKRVCV
type: CONSERVED_SITE
name: Cyt_P450_CS
description: Cytochrome P450, conserved site
Protein sequence:
MMEKHGGKVTSDRRAGRRQHGQRCSASDAAPLVVVVILIVGALFLILGPTGSSSFTVPRIRVVFNEPVHVAVAAPPPPPPPAQMQAGANASSEEDSGLPPPRQLTDPPYSLGRTILGYDARRSAWLAAHPEFPARVAPAGRPRVLVVTGSAPARCPDPDGDHLLLRAFKNKVDYCRIHGLDVFYNTAFLDAEMSGFWAKLPLLRMLMVAHPEAELIWWVDSDAVFTDMLFEIPWERYAVHNLVLHGWEAKVFDEKSWIGVNTGSFLIRNCQWSLDLLDAWAPMGPRGPVRDRYGELFAEELSGRPPFEADDQSALIYLLVTQRQRWGDKVFIESSYDLNGFWEGIVDRYEELRRAGRDDGRWPFVTHFVGCKPCRRYADSYPAERCRRGMERAFNFADDQILKLYGFAHESLNTTAVRRVRNETGEPLDAGDEELGRLLHPTFRAARPT

Annotated regions:
Protein sequence:
MTFPVEKVRADFPILQREVNGLPLAYLDSAASAQKPNQVIDAESAFYRHGYAAVHRGIHTLSAQATESMENVRKQASRFINARSAEELIFVRGTTEGINLVANSWGAENIRAGDNIIISEMEHHANIVPWQMLCERKGAELRVIPLNPDGTLRLEVLATLFDDRTRLLAITHVSNVLGTENPLPEMIAQARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLAQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVASLGLDKIGDYEQMLMHYALEQLAQVPDIRLYGPAQRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTYEEVDRLVAGLTRIYRLLG

Annotated regions:
phrase: CDFYVFSGHKLYGPTGIGI
type: BINDING_SITE
name: Aminotrans_V_PyrdxlP_BS
description: Aminotransferase class-V, pyridoxal-phosphate binding site

phrase: YLDSAASAQKPNQVIDAESAFYRHGYAAVHRGIHTLSAQATESMENVRKQASRFINARSAEELIFVRGTTEGINLVANSWGAENIRAGDNIIISEMEHHANIVPWQMLCERKGAELRVIPLNPDGTLRLEVLATLFDDRTRLLAITHVSNVLGTENPLPEMIAQARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLAQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVASLGLDKIGDYEQMLMHYALEQLAQVPDIRLYGPAQRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTYEEVDR
type: DOMAIN
name: Aminotrans_V_dom
description: Aminotransferase class V domain
Protein sequence:
MDNLRPVLYLSMLLVLFLIWQAWNRDYGPQPVAAPGAQEQVMDRDGVPAPPQDVPDAPVSEAVDAPTEVAPAEPDRRRIRVVTDVLDIEIDTRGGDLVRADLPTYPVSLRTPDQPIRLLDERFRQYVAQSGLIHDRVPGVSGEGRAPSHHAIFQAERDEFRLADGQDELRVPLTWTSEDGVQVTKTYTFRRGDFLINVDHAVRNNSDQPWVGRQYRQIRHGSTPSRESWFLYTFTGVAYHDGRYEKLSLEDMAGKPLDKDVQGGWISIIQHYFLTAWVPFEHEINQFYTRVLGTPARPEHIIGMRSEAQTAAPGEETVFTSRFWVGPKEQAALKAIQPGLELTVDYGMLSFLAKPLFWVLDWIHNVVGNWGWAIIILTILIKLVFYKLSETSYRSMAKMRAVQPKMMQLKDRYGDDKQRMNQALMELYKKEKINPLGGCLPILVQIPVFIALYWVLLESVEMRQAPWILWIQDLSVRDPYFILPILMGVTMIAQYKLNPAPMDPIQQKLMMALPFVFTVFFAFFPAGLVLYWFVNNLLSIAQQWYITRNIEKAGKKG

Annotated regions:
phrase: RIRVVTDVLDIEIDTRGGDLVRADLPTYPVSLRTPDQPIRLLDERFRQYVAQSGLIHDRVPGVSGEGRAPSHHAIFQAERDEFRLADGQDELRVPLTWTSEDGVQVTKTYTFRRGDFLINVDHAVRNNSDQPWVGRQYRQIRHGSTPSRESWFLYTFTGVAYHDGRYEKLSLEDMAGKPLDKDVQGGWISIIQHYFLTAWVPFEHEINQFYTRVLGTPARPEHIIGMRSEAQTAAPGEETVFTSRFWVGPKEQAALKAIQPGLELTVDYGMLSFLAKPLFW
type: DOMAIN
name: Membr_insert_YidC_N
description: Membrane insertase YidC, N-terminal

phrase: VFYKLSETSYRSMAKMRAVQPKMMQLKDRYGDDKQRMNQALMELYKKEKINPLGGCLPILVQIPVFIALYWVLLESVEMRQAPWILWIQDLSVRDPYFILPILMGVTMIAQYKLNPAPMDPIQQKLMMALPFVFTVFFAFFPAGLVLYWFVNNLLSIAQQWYIT
type: DOMAIN
name: YidC_ALB_C
description: Membrane insertase YidC/ALB, C-terminal

phrase: LRPVLYLSMLLVLFLIWQAWNRDYGPQPVAAPGAQEQVMDRDGVPAPPQDVPDAPVSEAVDAPTEVAPAEPDRRRIRVVTDVLDIEIDTRGGDLVRADLPTYPVSLRTPDQPIRLLDERFRQYVAQSGLIHDRVPGVSGEGRAPSHHAIFQAERDEFRLADGQDELRVPLTWTSEDGVQVTKTYTFRRGDFLINVDHAVRNNSDQPWVGRQYRQIRHGSTPSRESWFLYTFTGVAYHDGRYEKLSLEDMAGKPLDKDVQGGWISIIQHYFLTAWVPFEHEINQFYTRVLGTPARPEHIIGMRSEAQTAAPGEETVFTSRFWVGPKEQAALKAIQPGLELTVDYGMLSFLAKPLFWVLDWIHNVV
type: DOMAIN
name: Membr_insert_YidC_N
description: Membrane insertase YidC, N-terminal

phrase: RRIRVVTDVLDIEIDTRGGDLVRADLPTYPVSLRTPDQPIRLLDERFRQYVAQSGLIHDRVPGVSGEGRAPSHHAIFQAERDEFRLADGQDELRVPLTWTSEDGVQVTKTYTFRRGDFLINVDHAVRNNSDQPWVGRQYRQIRHGSTPSRESWFLYTFTGVAYHDGRYEKLSLEDMAGKPLDKDVQGGWISIIQHYFLTAWVPFEHEINQFYTRVLGTPARPEHIIGMRSEAQTAAPGEETVFTSRFWVGPKEQAALKAIQPGLELTVD
type: DOMAIN
name: Membr_insert_YidC_N
description: Membrane insertase YidC, N-terminal

phrase: WGWAIIILTILIKLVFYKLSETSYRSMAKMRAVQPKMMQLKDRYGDDKQRMNQALMELYKKEKINPLGGCLPILVQIPVFIALYWVLLESVEMRQAPWILWIQDLSVRDPYFILPILMGVTMIAQYKLNPAPMDPIQQKLMMALPFVFTVFFAFFPAGLVLYWFVNNLLSIAQQWYIT
type: DOMAIN
name: YidC/Oxa/ALB_C
description: Membrane insertase YidC/Oxa/ALB, C-terminal

phrase: NWGWAIIILTILIKLVFYKLSETSYRSMAKMRAVQPKMMQLKDRYGDDKQRMNQALMELYKKEKINPLGGCLPILVQIPVFIALYWVLLESVEMRQAPWILWIQDLSVRDPYFILPILMGVTMIAQYKLNPAPMDPIQQKLMMALPFVFTVFFAFFPAGLVLYWFVNNLLSIAQQWYIT
type: DOMAIN
name: YidC/Oxa/ALB_C
description: Membrane insertase YidC/Oxa/ALB, C-terminal
Protein sequence:
MDYSIKEQDFEVFELIEKELERQNEHLEMIASENFTFPSVMEAMGSILTNKYAEGYPFKRYYGGCEFVDKIEEIAIERAKKLFGANFVNVQPHSGSQANAAVYAAILKPYDKILGMDLSHGGHLTHGAKVSTSGQLYQSFFYGVELNGRIDYDKLALQAQVVKPNVLVCGFSAYTRELDFKRLREIADSVGAYLMGDIAHVAGLVVAGEYPNPFPHCHIVTTTTHKTLRGPRGGAILTNDEELYAKINKAVFPGIQGGPLMHIIAGKAVGFKENLKPEWKIYAKQVKSNIQALAEVLIKRNYELVSGGSDNHLILMSFLNKDFSGKDADLALGNAGITVNKNTIPGEIRSPFITSGIRIGSPALTARGMKEKEFEWIGEKIADILDDINNTNLQEHIKAQVKNFSRDFRIYDRPIF

Annotated regions:
phrase: IKEQDFEVFELIEKELERQNEHLEMIASENFTFPSVMEAMGSILTNKYAEGYPFKRYYGGCEFVDKIEEIAIERAKKLFGANFVNVQPHSGSQANAAVYAAILKPYDKILGMDLSHGGHLTHGAKVSTSGQLYQSFFYGVELNGRIDYDKLALQAQVVKPNVLVCGFSAYTRELDFKRLREIADSVGAYLMGDIAHVAGLVVAGEYPNPFPHCHIVTTTTHKTLRGPRGGAILTNDEELYAKINKAVFPGIQGGPLMHIIAGKAVGFKENLKPEWKIYAKQVKSNIQALAEVLIKRNYELVSGGSDNHLILMSFLNKDFSGKDADLALGNAGITVNKNTIPGEIRSPFITSGIRIGSPALTARGMKEKEFEWIG
type: DOMAIN
name: SHMT-like_dom
description: Serine hydroxymethyltransferase-like domain

phrase: HIVTTTTHKTLRGPRG
type: BINDING_SITE
name: Ser_HO-MeTrfase_PLP_BS
description: Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Protein sequence:
MNTTKKDIRALTKIQLRDFFVANGDKAFRGNQVYEWLWSKKVYSFEDMTNVSKETRQMLEDNFVINHIKVDQMQRSEDGTVKNAVRLYDGLVVESVLIPTATRTTACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIDNESRLYFERPLSNIVFMGMGEPLMNYNNVIKAIEMITSPEGLGMSPKRITLSTSGIPKMIKKMADEEVKFKLAVSLHSAIDEIRAEIMPFSKSFPLKELRESLEYWYQKTKSKITYEYVVWKGINDDKKSIDALVKFCKYVPCKVNLIEYNPIDDGMFQQASDAALDEYVKALDKIGVIAKVRKSRGKDIDAACGQLANKNEAVSE

Annotated regions:
phrase: SSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIDNESRLYFERPLSNIVFMGMGEPLMNYNNVIKAIEMITSPEGLGMSPKRITLSTSGIPKMIKKMADEEVKFKLAVSLHSAIDEIRAEIMPFSKSFPLKELRESLEYWYQKTKSKITYEYVVWKGINDD
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: NTTKKDIRALTKIQLRDFFVANGDKAFRGNQVYEWLWSKKVYSFEDMTNVSKETRQMLEDNFVINHIKVDQMQRSEDGTVKNAVRLYDGLVVESVLIPTATRTTACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIDNESRLYFERPLSNIVFMGMGEPLMNYNNVIKAIEMITSPEGLGMSPKRITLSTSGIPKMIKKMADEEVKFKLAVSLHSAIDEIRAEIMPFSKSFPLKELRESLEYWYQKTKSKITYEYVVWKGINDDKKSIDALVKFCKYVPCKVNLIEYNPIDDGMFQQASDAALDEYVKALDKIGVIAKVRKSRGKDIDAACGQLANKNE
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: TATRTTACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIDNESRLYFERPLSNIVFMGMGEPLMNYNNVIKAIEMITSPEGLGMSPKRITLSTSGIPKMIKKMADEEVKFKLAVSLHSAIDEIRAEIMPFSKSFPLKELRESLEYWYQKTKSKITYEYVVWKGINDDKKSIDALVKFCKYVPCKVNLIEYNPIDDGMFQQASDAALDEYVKALDKIGVIAKVRKSRGK
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: RALTKIQLRDFFVANGDKAFRGNQVYEWLWSKKVYSFEDMTNVSKETRQMLEDNFV
type: DOMAIN
name: RlmN_N
description: Dual-specificity RNA methyltransferase RlmN, N-terminal domain
Protein sequence:
MNPTEAKAIPGSKQLEGPHSPNKKRHKKQAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHTEPKSQPKHPSDTRSKHAPKEKAVSKSSEQPPSEKSTKPKTKSQDEISGGGKSAVPAVAAAASAEPADKNKESKLLTSAVPVESKPSKPSAKSDMDTALDDLIDTLGEPEETKEDTTTYTGPEVSDPMSSTYIEELGKREVTLPPKYRELLNKEEGIAGPPPDSSKPLGPNDAIDALSSDFTCSSPTADAKKTEKEKSTEEALKAQSAGVIRSAAPPKEKRRKVEEDTMTEQALEALSASLGTRKPRPELDPSSIKEVDEAKAKEEKVKKCGEDEERVPSEYRLKPATDKDGKPLLPEAEEKPKPLSESELIDELSEDFDRSKCKEKQSKPTEKNRGIPGRCPRACARGCASDLHVFCAVSSTHSSSSEGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEREETIPPDYRLEEAKDKDGKPLPPKEVKEPLPPLSEDFLLDALSKDFTVPSDTSSPQFEDAKLSVVVSEVVSQTPAPTTQAAGPPRDSARDNKELDDALDQLSDSLGQRQPDPDEHKPVEDKVKEKAKAEHRDKLGERDDTIPPKYQHLLDDNKEGTPGKPKRSESPRHQRSPRHQRNLQVPRTPLTPSQGTWTAVPQLQKPQQTQQRTKTRSLLPSDKAPRNGGKAKDSTKAKEETSKPKADGKSTS

Annotated regions:
phrase: AIDALSSDFTCSSPTADAKKTEKEKSTEEALKAQSAGVIRSAAPPKEKRRKVEEDTMTEQALEALSASLGTRKPRPELDPSSIKEVDEAKAKEEKVKKCGEDEERVPSEYRLKPATDKDGKPLL
type: REPEAT
name: Prot_inh_calpain
description: Proteinase inhibitor I27, calpastatin

phrase: LLDALSKDFTVPSDTSSPQFEDAKLSVVVSEVVSQTPAPTTQAAGPPRDSARDNKELDDALDQLSDSLGQRQPDPDEHKPVEDKVKEKAKAEHRDKLGERDDTIPPKYQHLLDDNKEGTP
type: REPEAT
name: Prot_inh_calpain
description: Proteinase inhibitor I27, calpastatin

phrase: LIDELSEDFDRSKCKEKQSKPTEKNRGIPGRCPRACARGCASDLHVFCAVSSTHSSSSEGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEREETIPPDYRLEEAKDKDGKPLP
type: REPEAT
name: Prot_inh_calpain
description: Proteinase inhibitor I27, calpastatin
Protein sequence:
MSLPILSTTYAAENTVPASKSTYVVKNLNIGDLPVKTLVPITAKTREQALAQAKVIAENKDADIAEFRIDLLEFASDTKKVIALGQELNQILKDKPLLATIRTSNEGGKLKVTDQEYEKIYSEYLKKPFMQLLDIEMFRDQAAVAKLTKLAHQKKVLVVMSNHDFDKTPSEQEIVSRLLKQDQMGADILKIAVMPKSKQDVFTLMNATLKVSEQSTKPLLTMSMGRLGTISRIATANMGGSLSFGMIGEASAPGQIDVTALKQFLKTVQPTP

Annotated regions:
phrase: DIEMFRDQAAVAKLTKLAHQKKVLVVMSNH
type: ACTIVE_SITE
name: 3-dehydroquinate_DH_AS
description: 3-dehydroquinate dehydratase, active site
Protein sequence:
MTVTIALPSKGRMKDESSAIFERAGMRITAVGNDRSYRGRVEGVEDVEITFLSASEIAREIGSGAVDFGVTGEDLVREGLADADARVEFAARLGFGHADVVVAVPEIWYDVDTMADLGDVAADFRARHGRRLAIATKYWRLTQQFFSGSHGIQLYRIVESLGATEGAPASGSADIIVDITSTGSTLKANHLKILSDGVILRSEACLVRARKAEHGGNPLIDRILAAVRSAL

Annotated regions:
phrase: ASEIAREIGSGAVDFGVTGEDLVREGLADADARVEFAARLGFGHADVVVAVPEIWYDVDTMADLGDVAADFRARHGRRLAIATKYWRLTQQFFSGSHGIQLYRIVESLGATEGAPASGSADIIVDITSTGSTLKANHLKILSDGVILRSEACLVRARKAEHGGNPLIDRILAA
type: DOMAIN
name: ATP_PRibTrfase_cat
description: ATP phosphoribosyltransferase, catalytic domain

phrase: EGAPASGSADIIVDITSTGST
type: CONSERVED_SITE
name: ATP_PRibTrfase_CS
description: ATP phosphoribosyltransferase, conserved site

phrase: VTIALPSKGRMKDESSAIFERAGMRITAVGNDRSYRGRVEGVEDVEITFLSASEIAREIGSGAVDFGVTGEDLVREGLADADARVEFAARLGFGHADVVVAVPEIWYDVDTMADLGDVAADFRARHGRRLAIATKYWRLTQQFFSGSHGIQLYRIVESLGATEGAPASGSADIIVDITSTGSTLKANHLKILSDGVILRSEACL
type: DOMAIN
name: ATP_PRibTrfase_cat
description: ATP phosphoribosyltransferase, catalytic domain
Protein sequence:
MTFDASGRLPEAFLTPGGSSFMDFLAGHAPDLLPGRRSLGTGDLSKDVPHGTTIVAATFDGGVVMAGDRRATMGNIIAQRDIEKVFPADEYSCVGIAGSAGLAIEMVRLFQVELEHYEKLEGTTLSLDGKANRLSALIRGNLAMAMQGLAVVPLFAGYDHDISGGRIFSYDPTGGRYEEQAFHSVGSGSLFARGSLKKLYRESMSAAECVTATIQALYDAADDDSATGGPDMARRIFPVIGVVTADGYQRMPEAEVGEIVDSVVGARLQRPDGPAAPLS

Annotated regions:
Protein sequence:
MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFETAPDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEVEPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALKKHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDARMPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVAEIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLDE

Annotated regions:
phrase: ETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIE
type: DOMAIN
name: RNA_pol_sigma70_r3
description: RNA polymerase sigma-70 region 3

phrase: FPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEVEPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALKKHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDARMPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAAL
type: DOMAIN
name: RNA_pol_sigma_70_non-ess
description: RNA polymerase sigma factor 70, non-essential domain

phrase: QQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFETAPDADALLLAEADTDEAAAEEA
type: DOMAIN
name: RNA_pol_sigma_70_r1_1
description: RNA polymerase sigma factor 70, region 1.1

phrase: DLIQEGNIGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: TLEEVGKQFDVTRERIRQIEAKALRK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
type: DOMAIN
name: RNA_pol_sigma-70_dom
description: RNA polymerase sigma-70-like domain

phrase: DLIQEGNIGLMKA
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: FSTYATWW
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: LTAREAKVLRMR
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: TLEEVGKQFDVTRER
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: IRQIEAKALRK
type: DOMAIN
name: RNA_pol_sigma70
description: RNA polymerase sigma-70

phrase: DPVRMYMREMGTVELLTREGEIEIAKRIEE
type: DOMAIN
name: RNA_pol_sigma70_r1_2
description: RNA polymerase sigma-70 region 1.2

phrase: VLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
type: DOMAIN
name: RNA_pol_sigma70_r4
description: RNA polymerase sigma-70 region 4

phrase: AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSF
type: DOMAIN
name: RNA_pol_sigma_RpoD_C
description: RNA polymerase sigma factor RpoD, C-terminal

phrase: MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
type: DOMAIN
name: RNA_pol_sigma70_r2
description: RNA polymerase sigma-70 region 2
Protein sequence:
RFKKIRRLGALPGLTSKRPRSGSDLKNQLRSGKRSQYRIRLEEKQKLRFHYGLTERQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKALIQNFIASSPRQEELPNHLTIDPFQYKGLVNQIIDSKWIGLKIN

Annotated regions:
phrase: LEMRLDNILFRLGMASTIPGARQL
type: CONSERVED_SITE
name: Ribosomal_uS4_CS
description: Small ribosomal subunit protein uS4, conserved site

phrase: MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKALIQNFI
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDI
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: KKIRRLGALPGLTSKRPRSGSDLKNQLRSGKRSQYRIRLEEKQKLRFHYGLTERQLLKYVHIAGKAKGSTGQILLQLL
type: DOMAIN
name: Ribosomal_uS4_N
description: Small ribosomal subunit protein uS4, N-terminal

phrase: RFKKIRRLGALPGLTSKRPRSGSDLKNQLRSGKRSQYRIRLEEKQKLRFHYGLTERQLLKYVHIAGKAKGSTGQILLQLL
type: DOMAIN
name: Ribosomal_uS4_N
description: Small ribosomal subunit protein uS4, N-terminal
Protein sequence:
MSASPDDLSTGGRLQNMTVDECFQSRNTVLQGQPFGGVPTVLCLNIALWVLVLVVYSFLRKAAWDYGRLALLIHNDSLTSLIYGEQSEKTSPSETSLEMERRDKGFCSWFFNSITMKDEDLINKCGDDARIYIVFQYHLIIFVLIICIPSLGIILPINYTGSVLDWSSHFARTTIVNVSTESKLLWLHSLLSFFYFITNFMFMAHHCLGFAPRNSQKVTRTLMITYVPKDIEDPELIIKHFHEAYPGSVVTRVHFCYDVRNLIDLDDQRRHAMRGRLFYTAKAKKTGKVMIRIHPCARLCFCKCWTCFKEVDAEQYYSELEEQLTDEFNAELNRVPLKRLDLIFVTFQDSRMAKRVRKDYKYVQCGVQPQQSSVTTIVKSYYWRVTMAPHPKDIIWKHLSVRRFFWWARFIAINTFLFFLFFFLTTPAIIMNTIDMYNVTRPIEKLQNPIVTQFFPSVMLWGFTVILPLIVYFSAFLEAHWTRSSQNLVMVHKCYIFLVFMVVILPSMGLTSLDVFLRWLFDIYYLEQASIRFQCVFLPDNGAFFVNYVITAALLGTGMELLRLGSLFCYSTRLFFSRSEPERVNIRKNQAIDFQFGREYAWMMNVFSVVMAYSITCPIIVPFGLLYLCMKHLTDRYNMYYSFAPTKLNEQIHMAAVSQAIFAPLLGLFWMLFFSILRLGSLHAITIFSLSTLLIAMVIAFVGIFLGKLRMVADYEPEEEEIQTVFDMEPSSTSSTPTSLLYVATVLQEPELNLTPASSPARHTYGTMNNQPEEGEEESGLRGFARELDSAQFQEGLELEGQNQYH

Annotated regions:
phrase: RTLMITYVPKDIEDPELIIKHFHEAYPGSVVTRVHFCYDVRNLIDLDDQRRHAMRGRLFYTAKAKKTGKVMIRIHPCARLCFCKCWTCFKEVDAEQYYSELEEQLTDEFNAELNRVPLKRLDLIFVTFQDSRMAKRVRKDYKYVQCGVQPQQSSVTTIVKSYYWRVTMAPHPKDIIWK
type: DOMAIN
name: CSC1/OSCA1-like_cyt
description: CSC1/OSCA1-like, cytosolic domain

phrase: RFIAINTFLFFLFFFLTTPAIIMNTIDMYNVTRPIEKLQNPIVTQFFPSVMLWGFTVILPLIVYFSAFLEAHWTRSSQNLVMVHKCYIFLVFMVVILPSMGLTSLDVFLRWLFDIYYLEQASIRFQCVFLPDNGAFFVNYVITAALLGTGMELLRLGSLFCYSTRLFFSRSEPERVNIRKNQAIDFQFGREYAWMMNVFSVVMAYSITCPIIVPFGLLYLCMKHLTDRYNMYYSFAPTKLNEQIHMAAVSQAIF
type: DOMAIN
name: CSC1/OSCA1-like_7TM
description: CSC1/OSCA1-like, 7TM region

phrase: LCLNIALWVLVLVVYSFLRKAAWDYGRLALLIHNDSLTSLIYGEQSEKTSPSETSLEMERRDKGFCSWFFNSITMKDEDLINKCGDDARIYIVFQYHLIIFVLIICIPSLGIILPINYTGSVLDWSSHFARTTIVNVSTESKLLWLHSLLSFFYFITNFMF
type: DOMAIN
name: Csc1/OSCA1-like_N
description: CSC1/OSCA1-like, N-terminal transmembrane domain
Protein sequence:
MPVRRLDPVLIDRIAAGEVIERPASALKELIENALDAGARRIDVAIEAGGRKLIRVVDDGCGMAPEDLDLAVERHATSKLPEGDLSSIETLGFRGEALPSIGSVAALEIFSRAMGSAVGARVKVDCGVKEGPAPAAQPQGTRVEIRDLFAGTPARLKFLRTDRAEARASAEIVERLAMAHPQVRFGFASSDVRGFDLAACADSPEGRLTRFSAVLGKDFRDNALFVEAEREGVRLQGFAGLPTWHRASAAAQHVFVNGRPVRDRLLLGAARAAYMDFLPSGRHAALVLFLTCDPREVDVNVHPAKAEVRFRDPGLTRGLIVGALKQTLADAQHRASPVNGASALDVLARRGPGFSGAGGPANWDWRRSPANPGFDAAALAGFAEAPAAAFAAVESLAADTRANAAAPSLEDLEAPLGAARAQIHETYIVSQTRDGIVIVDQHAAHERLVYERLKAARAGSKAPRQALLIPAIVELARAEVEAILDAAVLLAEFGLIIEPFGPGAVAVTETPALLQDPDPTRLARDLAAALVEDDGAAALERRFNLVLATMACHNSVRAGRRMRPEEMNALLRDMERTPGSGQCNHGRPTYVELKLADVEKLFGRR

Annotated regions:
phrase: FSAVLGKDFRDNALFVEAEREGVRLQGFAGLPTWHRASAAAQHVFVNGRPVRDRLLLGAARAAYMDFLPSGRHAALVLFLTCDPREVDVNVHPAKAEVRFRDPGLTRGLIVGALKQTL
type: DOMAIN
name: DNA_mismatch_S5_2-like
description: DNA mismatch repair protein, S5 domain 2-like

phrase: AQIHETYIVSQTRDGIVIVDQHAAHERLVYERLKAARAGSKAPRQALLIPAIVELARAEVEAILDAAVLLAEFGLIIEPFGPGAVAVTETPALLQDPDPTRLARDLAAALVEDDGAAALERRFNLVLATMACHNSVRAGR
type: DOMAIN
name: MutL_C
description: MutL, C-terminal, dimerisation

phrase: ARAQIHETYIVSQTRDGIVIVDQHAAHERLVYERLKAARAGSKAPRQALLIPAIVELARAEVEAILDAAVLLAEFGLIIEPFGPGAVAVTETPALLQDPDPTRLARDLAAALVEDDGAAALERRFNLVLATMACHNSVRAGRR
type: DOMAIN
name: MutL_C
description: MutL, C-terminal, dimerisation

phrase: AVLGKDFRDNALFVEAEREGVRLQGFAGLPTWHRASAAAQHVFVNGRPVRDRLLLGAARAAYMDFLPSGRHAALVLFLTCDPREVDVNVHPAKAEVRFRDPGLTRGLIVGALKQT
type: DOMAIN
name: DNA_mismatch_S5_2-like
description: DNA mismatch repair protein, S5 domain 2-like

phrase: GFRGEA
type: CONSERVED_SITE
name: DNA_mismatch_repair_CS
description: DNA mismatch repair, conserved site
Protein sequence:
MSDKNQIIARASLIEQLVSKRYFEDIGKQLTELEMIYVSKEHLQETDVVRAVYRVLKNCPSVTLKKKAKCLLAKWRGFYKSTHCKPRQSPKVLHTNANKEESAAVSQDVSQDETSGSSHSEIMGLCSSLSRLLPQDAAKPAAAIGSESSTAQMEINEGYLKGDDSECTRKSSGVFQGTLVSVRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELKQLRASYTESSIQEHCLPQSVDGTWTNKIKCRRCDKYNCKVTVIARGTLFLPSWVQNSNPDEQMTYVICNECGEQWYHNNWVCL

Annotated regions:
phrase: MSDKNQIIARASLIEQLVSKRYFEDIGKQLTELEMIYVSKEHLQETDVVRAVYRVLKNCPSVTLKKKAKCLLAKWRGFYKS
type: DOMAIN
name: TFIIS_N
description: Transcription factor IIS, N-terminal

phrase: VRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELKQLRASYTESSIQEHCLPQSVD
type: DOMAIN
name: TFIIS_cen_dom
description: Transcription elongation factor S-II, central domain

phrase: QLTELEMIYVSKEHLQETDVVRAVYRVLKNCPSVTLKKKAKCLLAKW
type: DOMAIN
name: TFIIS_N
description: Transcription factor IIS, N-terminal

phrase: SVRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELKQLRASYTESSIQE
type: DOMAIN
name: TFIIS_cen_dom
description: Transcription elongation factor S-II, central domain

phrase: VSVRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELKQLRA
type: DOMAIN
name: TFIIS_cen_dom
description: Transcription elongation factor S-II, central domain
Protein sequence:
MDYDTKYIFVTGGVLSSLGKGLASAAIGSLLESRGLSVTIQKLDPYLNVDPGTMNPFQHGEVFVTDDGTETDLDLGHYERFTRAKLGKDSNFTTGKIYDTVITKERRGDYLGGTVQVIPHITDEIKNSIKLAATGVDVVIVEIGGTIGDIESLPFLEAIRQFKTDAGKENVIYIHLTLVPYIGTAGELKTKPTQHSVKELRSIGIQPDILLCRTDRYLPKEIKAKIALFCNVSQDAVITAKDVGCIYEVPLVFHKEGLDDKIVELLKIWTRAPILDSWEAFVEKFKSPKYSVNIAIVGKYVDLTESYKSLNEALYHGGVANNCRPNLIFVDSETIDSDSCSGILSEADGILVPGGFGSRGIEGKICAARYARENNIPYFGICLGLHIAVIEFARHVLKLEGANSQEFDKLTPHPVIYLMLEWFDEQQGTIQKRDEHSDKGGTMRLGAYPCNLNENTLASAAYGVKEISERHRHRYEFNNQYKDQFIENGMVVSGISPSGELVEIIELKGHPWLLGCQFHPEFKSRPMDPHPLFRDFIKASLDHKNRRS

Annotated regions:
phrase: VNIAIVGKYVDLTESYKSLNEALYHGGVANNCRPNLIFVDSETIDSDSCSGILSEADGILVPGGFGSRGIEGKICAARYARENNIPYFGICLGLHIAVIEFARHVLKLEGANSQEFDKLTPHPVIYLMLEWFDEQQGTIQKRDEHSDKGGTMRLGAYPCNLNENTLASAAYGVKEISERHRHRYEFNNQYKDQFIENGMVVSGISPSGELVEIIELKGHPWLLGCQFHPEFKSRPMDPHPLFRDF
type: DOMAIN
name: GATase1_CTP_Synthase
description: CTP synthase GATase domain

phrase: KYIFVTGGVLSSLGKGLASAAIGSLLESRGLSVTIQKLDPYLNVDPGTMNPFQHGEVFVTDDGTETDLDLGHYERFTRAKLGKDSNFTTGKIYDTVITKERRGDYLGGTVQVIPHITDEIKNSIKLAATGVDVVIVEIGGTIGDIESLPFLEAIRQFKTDAGKENVIYIHLTLVPYIGTAGELKTKPTQHSVKELRSIGIQPDILLCRTDRYLPKEIKAKIALFCNVSQDAVITAKDVGCIYEVPLVFHKEGLDDKIV
type: DOMAIN
name: CTP_synthase_N
description: CTP synthase, N-terminal

phrase: TESYKSLNEALYHGGVANNCRPNLIFVDSETIDSDSCSGILSEADGILVPGGFGSRGIEGKICAARYARENNIPYFGICLGLHIAVIEFARHVLKLEGANSQEFDKLTPHPVIYLMLEWFDEQQGTIQKRDEHSDKGGTMRLGAYPCNLNENTLASAAYGVKEISERHRHRYEFNNQYKDQFIENGMVVSGISPSGELVEIIELKGHPWLLGCQFHPEFKSRPMDPHPLFRDFI
type: DOMAIN
name: GATASE
description: Glutamine amidotransferase

phrase: KYIFVTGGVLSSLGKGLASAAIGSLLESRGLSVTIQKLDPYLNVDPGTMNPFQHGEVFVTDDGTETDLDLGHYERFTRAKLGKDSNFTTGKIYDTVITKERRGDYLGGTVQVIPHITDEIKNSIKLAATGVDVVIVEIGGTIGDIESLPFLEAIRQFKTDAGKENVIYIHLTLVPYIGTAGELKTKPTQHSVKELRSIGIQPDILLCRTDRYLPKEIKAKIALFCNVSQDAVITAKDVGCIYEVPLVFHKEGLDDKIVELLK
type: DOMAIN
name: CTP_synthase_N
description: CTP synthase, N-terminal
Protein sequence:
MKLILATSNKGKVREIKALCEEFEVIPYSELLEEFEIIEDGDDFKENALIKARAVYKALNEKLGYEDIIVLADDSGISVDLLNGKPGIYSARYARKSATDKDNLYKLIQDIKDKNVKKSPAHYTAAIAIVTNKGEYSVHGWMYGEVVAEAVGDGGFGYDPMFIPLGYDKTLGQLDDEIKKQLSHRAKALELAKIILQTL

Annotated regions:
Protein sequence:
MPKYIFITGGVVSSLGKGIVSASTGKILESMGLRIMLMKCDPYINVDPGTMNPYQHGEVYVTEDGAETDLDIGHYERFTDTDLSKTNNITTGKIYFSVITKERRGDYLGATVQVVPHITDEIKASIRAVTKDKSVDVVICEIGGTVGDIESLPFLEAIRQFRQDVGRDHAINVHLTLIPYIRVADEIKTKPTQHSVGKMREIGIQPDILVCRTEKRLSKEVREKIALFCNLEPEQVIQALDVQDIYEVPLALKEEGIDRLIVRLLKLNCDEADARLEVWKTSVVDKVLNPAKKVIIAVVGKYMELQDAYKSIFEALKHGGIANDARIEIRRIDAEDVVADGAEKFLKDVNGILVPGGFGDRGVEGKIRAIKYARENRVPFFGVCLGMQCAVIEFSRNVCGMARANSTEFNKTTPFPVISLLEEQKRVVNLGGTMRLGSYPCQLKKGTKTLKAYGKDQIQERHRHRFEFNNKYKVKMETNGLIISGTSPNGRLVEIVELADHPWFVGCQFHPEFRSKPDQAHPLFRDFVKASLSHKID

Annotated regions:
phrase: VIIAVVGKYMELQDAYKSIFEALKHGGIANDARIEIRRIDAEDVVADGAEKFLKDVNGILVPGGFGDRGVEGKIRAIKYARENRVPFFGVCLGMQCAVIEFSRNVCGMARANSTEFNKTTPFPVISLLEEQKRVVNLGGTMRLGSYPCQLKKGTKTLKAYGKDQIQERHRHRFEFNNKYKVKMETNGLIISGTSPNGRLVEIVELADHPWFVGCQFHPEFRSKPDQAHPLFRDF
type: DOMAIN
name: GATase1_CTP_Synthase
description: CTP synthase GATase domain

phrase: LQDAYKSIFEALKHGGIANDARIEIRRIDAEDVVADGAEKFLKDVNGILVPGGFGDRGVEGKIRAIKYARENRVPFFGVCLGMQCAVIEFSRNVCGMARANSTEFNKTTPFPVISLLEEQKRVVNLGGTMRLGSYPCQLKKGTKTLKAYGKDQIQERHRHRFEFNNKYKVKMETNGLIISGTSPNGRLVEIVELADHPWFVGCQFHPEFRSKPDQAHPLFRDFV
type: DOMAIN
name: GATASE
description: Glutamine amidotransferase

phrase: KYIFITGGVVSSLGKGIVSASTGKILESMGLRIMLMKCDPYINVDPGTMNPYQHGEVYVTEDGAETDLDIGHYERFTDTDLSKTNNITTGKIYFSVITKERRGDYLGATVQVVPHITDEIKASIRAVTKDKSVDVVICEIGGTVGDIESLPFLEAIRQFRQDVGRDHAINVHLTLIPYIRVADEIKTKPTQHSVGKMREIGIQPDILVCRTEKRLSKEVREKIALFCNLEPEQVIQALDVQDIYEVPLALKEEGIDRLIV
type: DOMAIN
name: CTP_synthase_N
description: CTP synthase, N-terminal

phrase: KYIFITGGVVSSLGKGIVSASTGKILESMGLRIMLMKCDPYINVDPGTMNPYQHGEVYVTEDGAETDLDIGHYERFTDTDLSKTNNITTGKIYFSVITKERRGDYLGATVQVVPHITDEIKASIRAVTKDKSVDVVICEIGGTVGDIESLPFLEAIRQFRQDVGRDHAINVHLTLIPYIRVADEIKTKPTQHSVGKMREIGIQPDILVCRTEKRLSKEVREKIALFCNLEPEQVIQALDVQDIYEVPLALKEEGIDRLIVRLLK
type: DOMAIN
name: CTP_synthase_N
description: CTP synthase, N-terminal