nwliu/Molinst-SwissProtCLAP huggingface dataset:
Protein sequence:
MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKVVLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE

Annotated regions:
phrase: QEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKVVLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEELI
type: DOMAIN
name: T2SS/T4SS_dom
description: Type II/IV secretion system domain

phrase: LRQDPDVIMIGEIR
type: DOMAIN
name: T2SS/T4SS_dom
description: Type II/IV secretion system domain

phrase: ALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQ
type: DOMAIN
name: T2SS_GspE_N
description: Type II secretion system protein GspE, N-terminal
Protein sequence:
MKRRTTAVLTLTALLGTALTALPVQQAGAEEVEQVRNGTFDTTTDPWWTSNVTAGLSDGRLCADVPGGTTNRWDSAIGQNDITLVKGETYRFSFHASGIPEGHVVRAVVGLAVSPYDTWQEASPVLTEADGSYSYTFTAPVDTTQGQVAFQVGGSTDAWRFCVDDVSLLGGVPPEVYEPDTGPRVRVNQVAYLPAGPKNATLVTDATARLPWQLRNAQGTTVARGLTVPRGVDASSGQNVHSIDFGSYRGRGTGYTLVADGETSHPFDIDAAAYRPLRLDSVKYYYTQRSGIAIRDDLRPGYGRAAGHLNVAPNQGDANVPCQPGVCDYTLDVTGGWYDAGDHGKYVVNGGIATWELLSTYERSLTARTGHPAALGDGTLALPESGNKVPDVLDEARWELEFLLKMQVPAGQPLAGMAHHKLHDEQWTGLPLLPDQDPQKRELHPPTTAATLNLAATAAQAARLYRPFDKAFAARALTAARTAWQAALAHPDLLADPNDGTGGGAYNDDDVTDEFYWAAAELYLTTGERQFADHVLDSPVHTADIFGPTGFDWGHTAAAGRLDLALVPSRLPGRDQVRRSVIKAADTYLATLTAHPYGMPYAPAGNRYDWGSSHQVLNNGVVLASAYDLTGAAKYRDGALQGMDYVLGRNALNMSYVTGYGEVSSHNQHSRWYAHQLDPTLPNPPSGTLAGGPNSSIQDPYAQSKLTGCVGQFCYIDDIQSWSTNETAINWNAALARMASFAADQG

Annotated regions:
phrase: YIDDIQSWSTNETAINWN
type: ACTIVE_SITE
name: Glyco_hydro_9_Asp/Glu_AS
description: Glycosyl hydrolases family 9, Asp/Glu active sites

phrase: RVRVNQVAYLPAGPKNATLVTDATARLPWQLRNAQGTTVARGLTVPRGVDASSGQNVHSIDFGSYRGRGTGYTLVADGETSHPFD
type: DOMAIN
name: Cellulase_Ig-like
description: Cellulase, Ig-like domain

phrase: TGPRVRVNQVAYLPAGPKNATLVTDATARLPWQLRNAQGTTVARGLTVPRGVDASSGQNVHSIDFGSYRGRGTGYTLVADGET
type: DOMAIN
name: Cellulase_Ig-like
description: Cellulase, Ig-like domain

phrase: YVLGRNALNMSYVTGYGEVSSHNQHS
type: ACTIVE_SITE
name: Glyco_hydro_9_His_AS
description: Glycoside hydrolase family 9, His active site

phrase: YRPLRLDSVKYYYTQRSGIAIRDDLRPGYGRAAGHLNVAPNQGDANVPCQPGVCDYTLDVTGGWYDAGDHGKYVVNGGIATWELLSTYERSLTARTGHPAALGDGTLALPESGNKVPDVLDEARWELEFLLKMQVPAGQPLAGMAHHKLHDEQWTGLPLLPDQDPQKRELHPPTTAATLNLAATAAQAARLYRPFDKAFAARALTAARTAWQAALAHPDLLADPNDGTGGGAYNDDDVTDEFYWAAAELYLTTGERQFADHVLDSPVHTADIFGPTGFDWGHTAAAGRLDLALVPSRLPGRDQVRRSVIKAADTYLATLTAHPYGMPYAPAGNRYDWGSSHQVLNNGVVLASAYDLTGAAKYRDGALQGMDYVLGRNALNMSYVTGYGEVSSHNQHSRWYAHQLDPTLPNPPSGTLAGGPNSSIQDPYAQSKLTGCVGQFCYIDDIQSWSTNETAINWNAALA
type: DOMAIN
name: Glyco_hydro_9
description: Glycoside hydrolase family 9

phrase: EQVRNGTFDTTTDPWWTSNVTAGLSDGRLCADVPGGTTNRWDSAIGQNDITLVKGETYRFSFHASGIPEGHVVRAVVGLAVSPYDTWQEASPVLTEADGSYSYTFTAPVDTTQGQVAFQV
type: DOMAIN
name: CenC_carb-bd
description: Carbohydrate-binding, CenC-like
Protein sequence:
MHRYDVVVVGGGHAGCEAAAAAARLGASTLLITHKISTIGEMSCNPAIGGVAKGIVVREVDALDGIMGRAIDQASIHSVILNSSRGAAVWGPRAQADRKLYKKAIQEIILNHDNLTVKEESVDDFLIESNSNGEPYIKAIITSSGKQILTSKVVLTTGTFLQGMVHIGEQTTPSGRMGDKSAVELANTLKKYDFKLGRLRTGTPPRLDRSTINWSILEEQVGNNPPMPFSYLTEKINQPQVSCFITYTNENTHRIIQANLHRSASSYLNDIVAPRYCPSIEAKVKKFAEKNSHQIFLEPEGLDNITVYPNGISNSLPIEVQREMINSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGIIAGINAALSASQKKESFVLHRTDSYIGVMIDDLVTKGVTEPYRLFTSRAEYRLAIRSDNADRRLTQKGYNISLVSYKRYSALQNKLKSIKQLEEKLESLKITPEQLRFCGIKISHDGIRKTALDLLSYPNIDWNKLQEIWPELTNVTRWNDNKADQTVIQVVDTRIQKKNADSSVTRWNDKTGYWNDSKTTSNTIKNEICEAVAIEAKYKPYLVRQEADMKFLREEMNTQIPTNFNYSQIKGLSSEVIEKLQAIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKVAANSA

Annotated regions:
phrase: APRYCPSIEAKVKK
type: CONSERVED_SITE
name: MnmG-rel_CS
description: MnmG-related, conserved site

phrase: LREEMNTQIPTNFNYSQIKGLSSEVIEKLQAIKPATIGIAKQIQGITPAAIVSI
type: DOMAIN
name: MnmG_C
description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminal

phrase: KRYSALQNKLKSIKQLEEKLESLKITPEQLRFCGIKISHDGIRKTALDLLSYPNIDWNKLQEIWPELTNVTRWNDNKADQTVI
type: DOMAIN
name: GIDA_C_N
description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomain

phrase: AGQINGTTGYEEAAGQGIIAGIN
type: CONSERVED_SITE
name: MnmG-rel_CS
description: MnmG-related, conserved site

phrase: AKYKPYLVRQEADMKFLREEMNTQIPTNFNYSQIKGLSSEVIEKLQAIKPATIGIAKQIQGITPAAIVSIL
type: DOMAIN
name: MnmG_C_subdom
description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain

phrase: DVVVVGGGHAGCEAAAAAARLGASTLLITHKISTIGEMSCNPAIGGVAKGIVVREVDALDGIMGRAIDQASIHSVILNSSRGAAVWGPRAQADRKLYKKAIQEIILNHDNLTVKEESVDDFLIESNSNGEPYIKAIITSSGKQILTSKVVLTTGTFLQGMVHIGEQTTPSGRMGDKSAVELANTLKKYDFKLGRLRTGTPPRLDRSTINWSILEEQVGNNPPMPFSYLTEKINQPQVSCFITYTNENTHRIIQANLHRSASSYLNDIVAPRYCPSIEAKVKKFAEKNSHQIFLEPEGLDNITVYPNGISNSLPIEVQREMINSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGIIAGINAALSASQ
type: DOMAIN
name: MnmG_N
description: MnmG, N-terminal domain
Protein sequence:
MLYPQEFDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDIGGIQFRILNSSKGPAVRATRAQADRILYKAAIRDMLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLSSRLKELQLPQGRLKTGTPPRLDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFIGNAAMHPRQMPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIFLEPEGLTTNEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGQEAWLPRRDEAYLGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRAMGLVDDARWDAFSRKRDAVSRETERLKSTWVNPRIVTPEESERVLGKSIEREYNLFDLLRRPDVGYGKLMSLNEGRYASADVQPDVLGDLSASVVEQVEIAAKYAGYIDRQKDEVQRAAHFENLRLPAELDYMQVPALSFEVRQSLQKHRPETLGQASRMSGVTPAAISLLMVHLKKGGFRGFAPDVTDAKGEEASA

Annotated regions:
phrase: AAHFENLRLPAELDYMQVPALSFEVRQSLQKHRPETLGQASRMSGVTPAAISLL
type: DOMAIN
name: MnmG_C
description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminal

phrase: GPRYCPSVEDKINR
type: CONSERVED_SITE
name: MnmG-rel_CS
description: MnmG-related, conserved site

phrase: AGQINGTTGYEEAAAQGLFAGLN
type: CONSERVED_SITE
name: MnmG-rel_CS
description: MnmG-related, conserved site

phrase: AKYAGYIDRQKDEVQRAAHFENLRLPAELDYMQVPALSFEVRQSLQKHRPETLGQASRMSGVTPAAISLLM
type: DOMAIN
name: MnmG_C_subdom
description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain

phrase: DARWDAFSRKRDAVSRETERLKSTWVNPRIVTPEESERVLGKSIEREYNLFDLLRRPDVGYGKLMSLNEGRYASADVQPDVLGDLSASVVEQVEIAAKYAGYIDRQ
type: DOMAIN
name: GIDA_C_N
description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomain

phrase: DVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDIGGIQFRILNSSKGPAVRATRAQADRILYKAAIRDMLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLSSRLKELQLPQGRLKTGTPPRLDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFIGNAAMHPRQMPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIFLEPEGLTTNEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGQ
type: DOMAIN
name: MnmG_N
description: MnmG, N-terminal domain
Protein sequence:
MERHIRYDAASRSLILLDQRYLPTREEDFVCRNTDDIVTALQVMVVRGAPAIGVTAAWGCVLAAYETAESGMETWRPVLDGLIERIANARPTAVNLRWAVERMRAAWHSLGRADLATLITYWTNEAKRIHRDDIAINRRMGEHGAELIDDGDAVMTHCNAGALATAGYGTALGVIRGAVEAGKNITVIANETRPFLQGARLTAFELHEDGIPVTVACDNACGLLMKRGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGIPFYVAAPLSTIDRETPDGDHIPIENRTPTEVTHVGATQITPDGVPVFNFAFDVTPAHLIAGIVTEMGVLRAPYRESIAEAFRKAGL

Annotated regions:
Protein sequence:
MTSKFSTIEEAVEAIRQGGTXIVVDAEDRENEGDFICAAEKISPEMVNFMITHGRGQLCMPILPAVSERLHLQPMVDDNTAPLGTNYTVPVDHRTTRTGITAAERSKTIQALCDPNSVASDFHRPGHLFPLVAKEGGVLRRAGHTEAAVDLARMAGLTPAGALCEILDDAGDRASRHELRELSEKFDLPIISIEQLIAYRRIREKLVYRQAEARLPTRYGEGQIIAYGVHYELQEPIAFVIGDLTKSTAPLVRLHSSCFTGDLLESLRCDCGDQLHMALDMIRXEGCGVLVYLPQEGRGIGLVEKIKAYKLQDEGLDTVEANLALGYKADPRDYGIGIQLLKDLGLTNVRLLTNNPKKTDAFIYGGFDLGVVDQVPIVPPIHERNSEYMATKRDKMGHQLPPE

Annotated regions:
phrase: QAEARLPTRYGEGQIIAYGVHYELQEPIAFVIGDLTKSTAPLVRLHSSCFTGDLLESLRCDCGDQLHMALDMIRXEGCGVLVYLPQEGRGIGLVEKIKAYKLQDEGLDTVEANLALGYKADPRDYGIGIQLLKDLGLTNVRLLTNNPKKTDAFIYGGFDLGVVDQV
type: DOMAIN
name: GTP_cyclohydro_II
description: GTP cyclohydrolase II
Protein sequence:
MAKSNNQEQNQTQKSIQKIRTMVEGLDEISHGGIPIGRTTLVSGTSGTGKTLLAIQFLYNGIKEFDEPGVFVTFEESPADIIINANSFGWDLQGLIDEGKLFILDASPDPEGQEVVGNFDLSALIERIQYAIRKYKAKRVSIDSVTAVFQQYEGVGLIRREIFRLAARLKQVGVSSIMTTEREHEYGAVARFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTINKDGINIFPLGAMRLTQRSSNERVSSGIATLDQMCGGGFFKDSIILATGATGTGKTLLVSKFLEEGCLRGERAILFAYEESRAQLSRNAYSWGIDFEELEEKGLLKLLCTYPESAGLEDHLQAIKSEIEEFKPSRIAIDSLSALARGVTENAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGSHSITDSHISTITDTIIMLQYVEIRGEMSRAINVFKMRGSGHDKGIREYIIDEDGPEIKASFRNYERIISGAPSRISSDEKSELSRIVEGVRGKSEEDA

Annotated regions:
phrase: QKIRTMVEGLDEISHGGIPIGRTTLVSGTSGTGKTLLAIQFLYNGIKEFDEPGVFVTFEESPADIIINANSFGWDLQGLIDEGKLFILDASPDPEGQEVVGNFDLSALIERIQYAIRKYKAKRVSIDSVTAVFQQYEGVGLIRREIFRLAARLKQVGVSSIMTTEREHEYGAVARFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTINKDGINIFPLGAMRLTQRSS
type: DOMAIN
name: KaiC_dom
description: KaiC domain

phrase: IRTMVEGLDEISHGGIPIGRTTLVSGTSGTGKTLLAIQFLYNGIKEFDEPGVFVTFEESPADIIINANSFGWDLQGLIDEGKLFILDASPDPEGQEVVGNFDLSALIERIQYAIRKYKAKRVSIDSVTAVFQQYEGVGLIRREIFRLAARLKQVGVSSIMTTEREHEYGAVARFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTINKDGINI
type: DOMAIN
name: KaiC_N
description: Circadian clock protein kinase KaiC, N-terminal domain

phrase: VSSGIATLDQMCGGGFFKDSIILATGATGTGKTLLVSKFLEEGCLRGERAILFAYEESRAQLSRNAYSWGIDFEELEEKGLLKLLCTYPESAGLEDHLQAIKSEIEEFKPSRIAIDSLSALARGVTENAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGSHSITDSHISTITDTIIMLQYVEIRGEMSRAINVFKMRGSGHDKGIREYIIDEDGPEI
type: DOMAIN
name: KaiC-like_dom
description: KaiC-like domain

phrase: IRTMVEGLDEISHGGIPIGRTTLVSGTSGTGKTLLAIQFLYNGIKEFDEPGVFVTFEESPADIIINANSFGWDLQGLIDEGKLFILDASPDPEGQEVVGNFDLSALIERIQYAIRKYKAKRVSIDSVTAVFQQYEGVGLIRREIFRLAARLKQVGVSSIMTTEREHEYGAVARFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTINKDGINIFP
type: DOMAIN
name: KaiC-like_dom
description: KaiC-like domain

phrase: ERVSSGIATLDQMCGGGFFKDSIILATGATGTGKTLLVSKFLEEGCLRGERAILFAYEESRAQLSRNAYSWGIDFEELEEKGLLKLLCTYPESAGLEDHLQAIKSEIEEFKPSRIAIDSLSALARGVTENAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGSHSITDSHISTITDTIIMLQYVEIRGEMSRAINVFKMRGSGHDKGIREYIIDEDGPEIKASFRNYERIISG
type: DOMAIN
name: KaiC_dom
description: KaiC domain

phrase: VSSGIATLDQMCGGGFFKDSIILATGATGTGKTLLVSKFLEEGCLRGERAILFAYEESRAQLSRNAYSWGIDFEELEEKGLLKLLCTYPESAGLEDHLQAIKSEIEEFKPSRIAIDSLSALARGVTENAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGSHSITDSHISTITDTIIMLQYVEIRGEMSRAINVFKMRGSGHDKGIREYIIDEDGPEI
type: DOMAIN
name: KaiC_C
description: Circadian clock protein kinase KaiC, C-terminal domain
Protein sequence:
MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNALLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPDARRHLLNYGWPGNVRELEHAIHRAVVLARATRAGDEVILEAQHFALSEDVLPAPPAESFLALPTCRNLRESTENFQREMIRQALAQNNHNWAASARALETDVANLHRLAKRLGLKD

Annotated regions:
phrase: QDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALA
type: DOMAIN
name: GAF
description: GAF domain

phrase: GHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNALLIEQL
type: DOMAIN
name: GAF
description: GAF domain

phrase: SDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS
type: DOMAIN
name: AAA+_ATPase
description: AAA+ ATPase domain

phrase: GKFEMADNGTLFLDE
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_2
description: Sigma-54 interaction domain, ATP-binding site 2

phrase: VLIGGETGTGKEL
type: BINDING_SITE
name: Sigma_54_int_dom_ATP-bd_1
description: Sigma-54 interaction domain, ATP-binding site 1

phrase: MIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPDARRHLLNYGWPGNVRELEHAIHRAV
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain

phrase: WPGNVRELE
type: CONSERVED_SITE
name: Sigma_54_int_dom_CS
description: Sigma-54 interaction domain, conserved site

phrase: MIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP
type: DOMAIN
name: Sigma_54_int
description: RNA polymerase sigma factor 54 interaction domain
Protein sequence:
MARDLGPRGKMCRRLGIPLSRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRLREKQKLKLYYGLMEKQCRAVFQEASRAPGNTGTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSFRVKPGSEVRFHAAHQKLAVVQESFSRMKSRSVPAYVQVLGEGEGLRYVRLPEREEIPVDVNEPFIVEYYAQRS

Annotated regions:
phrase: LGPRGKMCRRLGIPLSRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRLREKQKLKLYYGLMEKQCRAVFQEASRAPGNTGTVLLQLL
type: DOMAIN
name: Ribosomal_uS4_N
description: Small ribosomal subunit protein uS4, N-terminal

phrase: RDLGPRGKMCRRLGIPLSRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRLREKQKLKLYYGLMEKQCRAVFQEASRAPGNTGTVLLQLL
type: DOMAIN
name: Ribosomal_uS4_N
description: Small ribosomal subunit protein uS4, N-terminal

phrase: SRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSFRVKPGSEVRFHAAHQKLAVV
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: RLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSFRVKPGSE
type: DOMAIN
name: S4_RNA-bd
description: RNA-binding S4 domain

phrase: LESRLDSLVLRAGLATSIRQARQF
type: CONSERVED_SITE
name: Ribosomal_uS4_CS
description: Small ribosomal subunit protein uS4, conserved site
Protein sequence:
MRVAIVGVSGAVGQEFLSILGERSLPIDELVLFGSARSAGKVYDFKGKQLTVKELKHNDDFKGIDIALVSAGGSTSLEFAPTITKYGALMIDNSSAFRMDTDVPLVVPEVNAEDALHTPRNIIANPNCTTIQMVVALQALESISHVKRVHVSAYQSASGAGAMGMAELEKQVKEYVAGEALSIEKFAHQLLFNVIPHIDVFTDNGYTKEEMKMYNETRKIMHSDVQVSATCVRVPVMRAHSESVWAETEEAVSPEAFRAVCEKTTGITVVDNPGKNEYPMPWDIAGKDDVYVGRIRKDLSNPNGLSFWCVSDQIRKGAALNAVQIAEYLIEKKFK

Annotated regions:
phrase: ISHVKRVHVSAYQSASGAGAMGMAELEKQVKEYVAGEALSIEKFAHQLLFNVIPHIDVFTDNGYTKEEMKMYNETRKIMHSDVQVSATCVRVPVMRAHSESVWAETEEAVSPEAFRAVCEKTTGITVVDNPGKNEYPMPWDIAGKDDVYVGRIRKDLSNPNGLSFWCVSDQIR
type: DOMAIN
name: Semialdhyde_DH_dimer_dom
description: Semialdehyde dehydrogenase, dimerisation domain

phrase: RVAIVGVSGAVGQEFLSILGERSLPIDELVLFGSARSAGKVYDFKGKQLTVKELKHNDDFKGIDIALVSAGGSTSLEFAPTITKYGALMIDNSSAFRMDTDVPLVVPEVNAE
type: DOMAIN
name: Semialdehyde_DH_NAD-bd
description: Semialdehyde dehydrogenase, NAD-binding

phrase: RVAIVGVSGAVGQEFLSILGERSLPIDELVLFGSARSAGKVYDFKGKQLTVKELKHNDDFKGIDIALVSAGGSTSLEFAPTITKYGALMIDNSSAFRMDTDVPLVVPEVNAEDALH
type: DOMAIN
name: Semialdehyde_DH_NAD-bd
description: Semialdehyde dehydrogenase, NAD-binding
Protein sequence:
MAKVRAALDRITDPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAPDAADTLEKYGIATNPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCTFLFLKRSKLRYLRRGPSNNDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTFHFFTRKMLADLFFHNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLEWLKVGHLKSPELCLTFQMIESIGANHLFMITRGIKITPRVRTFTKDSYVLFPQIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQLIKTSELSDYHPDEIVHIVNYFVFISKLDSINSYSDILSLPIWSKALLPIKTKITQLWEKLTGARAFNQLLDALQWKTFTYPLEVVDSPQPLQTRDCFIEDERLEIDTLEDEIPPNPNDNTSMSPQSIEEAVKNNPDLPWAPWLLILQAHNADCTEKQYDPENNLILPIQEINTLPKHQHPDIPTDLLTLLTKLHREPTTVSLDNHRARAYGSDVKNLRIGALLKKQSKDWLASFALKTENIEREVLMSVIHGAGGSGKSHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTNKVPNLEQANFKTFEKALCQPCGKIIVFDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSIITYQPFCRYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQKSMTYAGCQGLTTKAV

Annotated regions:
phrase: NPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCTFLFLKRSKLRYLRRGPSNNDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTFHFFTRKMLADLFFHNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLEW
type: DOMAIN
name: Alphavirus-like_MT_dom
description: Alphavirus-like methyltransferase domain

phrase: VIHGAGGSGKSHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTNKVPNLEQANFKTFEKALCQPCGKIIVFDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSIITYQPFCRYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQKSMTYAGCQGLTTKA
type: DOMAIN
name: (+)RNA_virus_helicase_core_dom
description: (+) RNA virus helicase core domain

phrase: LKKQSKDWLASFALKTENIEREVLMSVIHGAGGSGKSHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTNKVPNLEQANFKTFEKALCQPCGKIIVFDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSIITYQPFCRYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQKSMTYAGCQGLTTKA
type: DOMAIN
name: (+)RNA_virus_helicase_core_dom
description: (+) RNA virus helicase core domain

phrase: NPYAIAPDAADTLEKYGIATNPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCTFLFLKRSKLRYLRRGPSNNDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTFHFFTRKMLADLFFHNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLEWLKVGHLKSPELCLTFQMIESIGANHLFMITRGIKITPRVRTFTKDSYVLFPQIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQLI
type: DOMAIN
name: Alphavirus-like_MT_dom
description: Alphavirus-like methyltransferase domain
Protein sequence:
MAGPRGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFCSPGQAGVSPPRKGLAPCSPPSVAPTPVEPEDVAQGEELSSGSLSEQGTGQTPSSTCAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEHCARLGPGTRSGTRPGPFSQPKQQHQQQLAEDAKDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGKLQELASPPAGRPTPAPRKASESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNGRLHELPVPKPRGTPKPSEGTPAPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPSQDSRQVENGGTEEVAQPSPTASLESKPYNPFEEEEEDKEEEAPAAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLALHASRLSHSEPPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQVKSSCKENPFNRKPSPAASPATKKATKGSKPVRPPAPGHGFPLIKRKVQADQYIPEEDIHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGREDDMLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNK

Annotated regions:
phrase: STCAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEHCARLGPG
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: IHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGREDDMLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLN
type: DOMAIN
name: bMERB_dom
description: bMERB domain

phrase: RGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNH
type: DOMAIN
name: CH_dom
description: Calponin homology domain

phrase: AGPRGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHF
type: DOMAIN
name: CH_dom
description: Calponin homology domain

phrase: RKVQADQYIPEEDIHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGREDDMLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLN
type: DOMAIN
name: bMERB_dom
description: bMERB domain

phrase: TCAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAE
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: PRGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQ
type: DOMAIN
name: CH_dom
description: Calponin homology domain

phrase: CAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEH
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type

phrase: CAACQQHVHLVQRYLADGRLYHRHCFRCRRCSST
type: DOMAIN
name: Znf_LIM
description: Zinc finger, LIM-type
Protein sequence:
MIDRVAPGPADAPPTPVPVPDPSGHAAAGPGELAALAASIRAWGAALGFASVRIADVDLAHAEPGLLAWLAQGYHGDMDYMANHGLRRARPAELVPGTVRAIVARMPYVPVAGAHAAAADWRRHELARLDDPATAVVSLYARGRDYHKVLRSRLQQLASRIEAEIGKFGYRVFTDSAPVMEVALASQGGLGWRGKHTLLLDRDGGSMFFLGEILVDIPLPADPPEAGHCGSCHRCLDICPTRAIVAPYRLDARRCISYLTIEHKGAIPVEFRAPMGNRVYGCDDCQLACPWNKFAHVATVPDFDVRNGLDAPDMVALFAWTEAEFNQRLEGSPIRRIGHERWLRNLAVGLGNSLRAALSGTRAEDAALAARIRAALLARRETATPMVQEHIDWALAQGGPPAQRAGAD

Annotated regions:
phrase: CGSCHRCLDIC
type: CONSERVED_SITE
name: 4Fe4S_Fe_S_CS
description: 4Fe-4S ferredoxin, iron-sulphur binding, conserved site

phrase: IPLPADPPEAGHCGSCHRCLDICPTRAIVAPY
type: DOMAIN
name: 4Fe4S_Fe-S-bd
description: 4Fe-4S ferredoxin-type, iron-sulphur binding domain

phrase: RARPAELVPGTVRAIVARMPYVPVAGAHAAAADWRRHELARLDDPATAVVSLYARGRDYHKVLRSRLQQLASRIEAEIGKFGYRVFTD
type: DOMAIN
name: QueG_DUF1730
description: Epoxyqueuosine reductase QueG, DUF1730
Protein sequence:
MRVLASAPAKIILFGEHSVVYGKPAIAAAIDLRTYVWAEFNNKGAIKIEAKDIKVPGLTVSFSEDEIYFESDYGKAAEVLSYVRQAIELVREEADKNGNGVTVSITSQIPVGAGLGSSAAVAVATIGAVSRLLGLELSNEEIAKLGHKVELLVQGASSGIDPTVSAIGGFLHYEKGNFEHLPFMELPIVVGYTGSSGSTKELVAMVRRNYEEMPEVIEPILVSMGKIVEKAKDVLLSELDNEVRFVQLGRLMNINHGLLDALGVSTKKLSELVYAARTAGALGAKITGAGGGGCMYALAPEKQSEVATAITIAGGTPMITKISDEGLRIEEVLP

Annotated regions:
phrase: IPVGAGLGSSA
type: CONSERVED_SITE
name: GHMP_knse_ATP-bd_CS
description: GHMP kinase, ATP-binding, conserved site

phrase: FVQLGRLMNINHGLLDALGVSTKKLSELVYAARTAGALGAKITGAGGGGCMYALAPEKQSEVATA
type: DOMAIN
name: GHMP_kinase_C_dom
description: GHMP kinase, C-terminal domain

phrase: YVRQAIELVREEADKNGNGVTVSITSQIPVGAGLGSSAAVAVATIGAVSRLLGLELSNEEIAKLGHKVELLVQGASSGIDPTVSAIG
type: DOMAIN
name: GHMP_kinase_N_dom
description: GHMP kinase N-terminal domain
Protein sequence:
MLSQKRILLILGGGIAAFKSLDLIRRLRERGASVTPVLTRAAQEFVTPLSVSALAGEKVFTDLFDLTDEAEMGHIELSRSADLIVVAPATADLMAKMAQGHADDLASTLLLATDTPVLVAPAMNVRMWEHPATQRNLAILQGDGVRVVGPNEGDMACGEYGPGRMSEPLEIVAAVEAALAGGPLAGRRVLVTSGPTHEPIDPVRYIANRSSGAQGTAIAAALRDLGAEVVFVTGPASVPPPPGVTVHRVETAREMRDAALAALPVEAAVFAAAVADWRVTSASDSKMKKTKTGLPQLEFAENPDILAEVSALHEGRPGLVVGFAAETDDVIANATAKRARKGCDWIVANDVSHATGIMGGSENAVTLIHAEGSEDWPRMGKAQVAARLADRIAEAIGADKT

Annotated regions:
phrase: KRILLILGGGIAAFKSLDLIRRLRERGASVTPVLTRAAQEFVTPLSVSALAGEKVFTDLFDLTDEAEMGHIELSRSADLIVVAPATADLMAKMAQGHADDLASTLLLATDTPVLVAPAMNVRMWEHPATQRNLAILQGDGVRVVGPNEGDMACGEYGPGRMSEPLEIVAAVE
type: DOMAIN
name: Flavoprotein
description: Flavoprotein

phrase: LAGRRVLVTSGPTHEPIDPVRYIANRSSGAQGTAIAAALRDLGAEVVFVTGPASVPPPPGVTVHRVETAREMRDAALAALPVEAAVFAAAVADWRVTSASDSKMKKTKTGLPQLEFAENPDILAEVSALHEGRPGLVVGFAAETDDVIANATAKRARKGCDWIVANDVSHATGIMGGSENAVTL
type: DOMAIN
name: DNA/pantothenate-metab_flavo_C
description: DNA/pantothenate metabolism flavoprotein, C-terminal
Protein sequence:
MKETGIELMKNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDNHAQNIVLVSHLGRPKGRNAEFSLKHVLKRVERLLGRDIAFAETIENVENLQQQSKSGSVILLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRAHSSTCGIAKYAKECVAGLLLKKEIDSFAKAMANPLKPVLLIVGGSKVSSKLALLYNILDVVDKIIIGGAMSNTFLKARGFDMQKSLVEDDLVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFMAVDMGPATSKLFSEVVRDSQTIIWNGPLGIYEIQAFSRGTFNLAHAVSDTYAFSLIGGGDTADAIDKAGERDNMSFISTGGGASLELLEGKILPAFEVLERK

Annotated regions:
phrase: RVLIRVDFNV
type: CONSERVED_SITE
name: Phosphoglycerate_kinase_CS
description: Phosphoglycerate kinase, conserved site
Protein sequence:
MTAEKQNIREITTEEIAQFLTSKGEKAFRAKQIRQWIWQKGVHSFDEMTNLPKSTRELLAGQYIFDSLTADRIQSATDGTTKTAWRLHDGNYVESVLIPGNDRYTVCVSSQAGCQLGCSFCATGTLGFKRNLTPGEIFDQVVAAREEAEKRESQLSNIVFMGMGEPLMNYDNVLRAIDRITAEDGLAMSPSRITVSTAGIPDKIRQLADDDVRFNLAVSLHSAREEIRSKLMPVNRAHSLAELAESLKYFTGKTGIRPTFEYLLLAGINDSLEDAKVLAAYCRQFPVKINIIEYNAVENSPFRHSPEKQRDSFIRFLESCNMIVNIRRSKGKDIDAACGQLANKANKKK

Annotated regions:
phrase: NIREITTEEIAQFLTSKGEKAFRAKQIRQWIWQKGVHSFDEMTNLPKSTRELL
type: DOMAIN
name: RlmN_N
description: Dual-specificity RNA methyltransferase RlmN, N-terminal domain

phrase: YTVCVSSQAGCQLGCSFCATGTLGFKRNLTPGEIFDQVVAAREEAEKRESQLSNIVFMGMGEPLMNYDNVLRAIDRITAEDGLAMSPSRITVSTAGIPDKIRQLADDDVRFNLAVSLHSAREEIRSKLMPVNRAHSLAELAESLKYFTGKTGIRPTFEYLLLAGINDSLEDAKVLAAYCRQFPVKINIIEYNAVENSPFRHSPEKQRDSFIRFLE
type: DOMAIN
name: Elp3/MiaA/NifB-like_rSAM
description: Elp3/MiaA/NifB-like, radical SAM core domain

phrase: GNDRYTVCVSSQAGCQLGCSFCATGTLGFKRNLTPGEIFDQVVAAREEAEKRESQLSNIVFMGMGEPLMNYDNVLRAIDRITAEDGLAMSPSRITVSTAGIPDKIRQLADDDVRFNLAVSLHSAREEIRSKLMPVNRAHSLAELAESLKYFTGKTGIRPTFEYLLLAGINDSLEDAKVLAAYCRQFPVKINIIEYNAVENSPFRHSPEKQRDSFIRFLESCNMIVNIRRSKGK
type: DOMAIN
name: rSAM
description: Radical SAM

phrase: SSQAGCQLGCSFCATGTLGFKRNLTPGEIFDQVVAAREEAEKRESQLSNIVFMGMGEPLMNYDNVLRAIDRITAEDGLAMSPSRITVSTAGIPDKIRQLADDDVRFNLAVSLHSAREEIRSKLMPVNRAHSLAELAESLKYFTGKTGIRPTFEYLLLAGIND
type: DOMAIN
name: rSAM
description: Radical SAM