{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pickle\n",
    "import difflib\n",
    "import unidiff\n",
    "import re\n",
    "from unidiff import Hunk, PatchedFile, PatchSet\n",
    "import pandas as pd\n",
    "from typing import List, Tuple\n",
    "import os\n",
    "import json"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "data = {}\n",
    "with open('data1.pkl','rb') as f:\n",
    "    data = pickle.load(f)\n",
    "\n",
    "#print(data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "data_0 = {}\n",
    "with open('data0.pkl','rb') as f:\n",
    "    data_0 = pickle.load(f)\n",
    "\n",
    "#print(data_0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'private final void realStartServiceLocked(ServiceRecord r,ProcessRecord app,boolean execInFg) throws RemoteException {\\n  if (app.thread == null) {\\n    throw new RemoteException();\\n  }\\n  if (DEBUG_MU)   Slog.v(TAG_MU,\"String_Node_Str\" + r.appInfo.uid + \"String_Node_Str\"+ app.uid);\\n  r.app=app;\\n  r.restartTime=r.lastActivity=SystemClock.uptimeMillis();\\n  app.services.add(r);\\n  bumpServiceExecutingLocked(r,execInFg,\"String_Node_Str\");\\n  mAm.updateLruProcessLocked(app,false,null);\\n  mAm.updateOomAdjLocked();\\n  boolean created=false;\\n  try {\\n    String nameTerm;\\n    int lastPeriod=r.shortName.lastIndexOf(\\'.\\');\\n    nameTerm=lastPeriod >= 0 ? r.shortName.substring(lastPeriod) : r.shortName;\\n    EventLogTags.writeAmCreateService(r.userId,System.identityHashCode(r),nameTerm,r.app.uid,r.app.pid);\\nsynchronized (r.stats.getBatteryStats()) {\\n      r.stats.startLaunchedLocked();\\n    }\\n    mAm.ensurePackageDexOpt(r.serviceInfo.packageName);\\n    app.forceProcessStateUpTo(ActivityManager.PROCESS_STATE_SERVICE);\\n    app.thread.scheduleCreateService(r,r.serviceInfo,mAm.compatibilityInfoForPackageLocked(r.serviceInfo.applicationInfo),app.repProcState);\\n    r.postNotification();\\n    created=true;\\n  }\\n  finally {\\n    if (!created) {\\n      app.services.remove(r);\\n      r.app=null;\\n      scheduleServiceRestartLocked(r,false);\\n    }\\n  }\\n  requestServiceBindingsLocked(r,execInFg);\\n  if (r.startRequested && r.callStart && r.pendingStarts.size() == 0) {\\n    r.pendingStarts.add(new ServiceRecord.StartItem(r,false,r.makeNextStartId(),null,null));\\n  }\\n  sendServiceArgsLocked(r,execInFg,true);\\n  if (r.delayed) {\\n    if (DEBUG_DELAYED_STARTS)     Slog.v(TAG,\"String_Node_Str\" + r);\\n    getServiceMap(r.userId).mDelayedStartList.remove(r);\\n    r.delayed=false;\\n  }\\n  if (r.delayedStop) {\\n    r.delayedStop=false;\\n    if (r.startRequested) {\\n      if (DEBUG_DELAYED_STARTS)       Slog.v(TAG,\"String_Node_Str\" + r);\\n      stopServiceLocked(r);\\n    }\\n  }\\n}'"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data[0]['new']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'private final void realStartServiceLocked(ServiceRecord r,ProcessRecord app,boolean execInFg) throws RemoteException {\\n  if (app.thread == null) {\\n    throw new RemoteException();\\n  }\\n  if (DEBUG_MU)   Slog.v(TAG_MU,\"String_Node_Str\" + r.appInfo.uid + \"String_Node_Str\"+ app.uid);\\n  r.app=app;\\n  r.restartTime=r.lastActivity=SystemClock.uptimeMillis();\\n  app.services.add(r);\\n  bumpServiceExecutingLocked(r,execInFg,\"String_Node_Str\");\\n  mAm.updateLruProcessLocked(app,false,null);\\n  mAm.updateOomAdjLocked();\\n  boolean created=false;\\n  try {\\n    String nameTerm;\\n    int lastPeriod=r.shortName.lastIndexOf(\\'.\\');\\n    nameTerm=lastPeriod >= 0 ? r.shortName.substring(lastPeriod) : r.shortName;\\n    EventLogTags.writeAmCreateService(r.userId,System.identityHashCode(r),nameTerm,r.app.uid,r.app.pid);\\nsynchronized (r.stats.getBatteryStats()) {\\n      r.stats.startLaunchedLocked();\\n    }\\n    mAm.ensurePackageDexOpt(r.serviceInfo.packageName);\\n    app.forceProcessStateUpTo(ActivityManager.PROCESS_STATE_SERVICE);\\n    app.thread.scheduleCreateService(r,r.serviceInfo,mAm.compatibilityInfoForPackageLocked(r.serviceInfo.applicationInfo),app.repProcState);\\n    r.postNotification();\\n    created=true;\\n  }\\n  finally {\\n    if (!created) {\\n      app.services.remove(r);\\n      r.app=null;\\n      scheduleServiceRestartLocked(r,false);\\n    }\\n  }\\n  requestServiceBindingsLocked(r,execInFg);\\n  if (r.startRequested && r.callStart && r.pendingStarts.size() == 0) {\\n    r.pendingStarts.add(new ServiceRecord.StartItem(r,false,r.makeNextStartId(),null,null));\\n  }\\n  sendServiceArgsLocked(r,execInFg,true);\\n  if (r.delayed) {\\n    if (DEBUG_DELAYED_STATS)     Slog.v(TAG,\"String_Node_Str\" + r);\\n    getServiceMap(r.userId).mDelayedStartList.remove(r);\\n    r.delayed=false;\\n  }\\n  if (r.delayedStop) {\\n    r.delayedStop=false;\\n    if (r.startRequested) {\\n      if (DEBUG_DELAYED_STATS)       Slog.v(TAG,\"String_Node_Str\" + r);\\n      stopServiceLocked(r);\\n    }\\n  }\\n}'"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data[0]['old']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "flat_map = lambda f, xs: (y for ys in xs for y in f(ys))\n",
    "def generate_dict_training(data):\n",
    "    res = {\n",
    "        'program_id':[],\n",
    "        'project_id':[],\n",
    "        'source':[],\n",
    "        'target': [],\n",
    "        'path': [],\n",
    "    }\n",
    "    for identifier,entry in enumerate(data):\n",
    "        res['path'].append('None')\n",
    "        res['program_id'].append(identifier)\n",
    "        res['project_id'].append(identifier)\n",
    "        res['source'].append(entry['old'])\n",
    "        res['target'].append(entry['new'])\n",
    "    return res"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "pd.DataFrame(data=generate_dict_training(data)).to_csv('training_data_1.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "pd.DataFrame(data=generate_dict_training(data_0)).to_csv('training_data_0.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "pd.DataFrame(data=generate_dict_training(data + data_0) ).to_csv('training_data.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "import stringfycode"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [],
   "source": [
    "def process_inference_results(dataset_name,get_ground_truth):\n",
    "    res = {\n",
    "        'program_id':[],\n",
    "        'project_id':[],\n",
    "        'source':[],\n",
    "        'target': [],\n",
    "        'path': [],\n",
    "    }\n",
    "    patch_info = {\n",
    "        'project_id':[],\n",
    "        'program_id':[],\n",
    "    }\n",
    "    bug_maps = {}\n",
    "\n",
    "    for bug in os.listdir(f'./patch_{dataset_name}/'):\n",
    "        with open(os.path.join(f'./patch_{dataset_name}/',bug)) as f:\n",
    "            patches = json.load(f)\n",
    "            #print(\"BUG NAME:\",bug)\n",
    "            #print(len(patches))\n",
    "            bug_maps[bug[:-5]] = patches # remove.json\n",
    "        \n",
    "    max_patch_count = max(map(len,bug_maps.values()))\n",
    "\n",
    "    for i in range(max_patch_count):\n",
    "        #print(i)\n",
    "        patch_info['patch_{}'.format(i)] = []\n",
    "\n",
    "    for bug_id,patches in bug_maps.items():\n",
    "        splitted = bug_id.split('-')\n",
    "        if len(splitted) == 2:\n",
    "            project_id,program_id = splitted\n",
    "        else:\n",
    "            project_id = program_id = bug_id \n",
    "        code = patches[0]['precode'] + patches[0]['oldcode'] + patches[0]['aftercode']\n",
    "        \n",
    "        res['program_id'].append(program_id)\n",
    "        res['project_id'].append(project_id)\n",
    "\n",
    "        patch_info['program_id'].append(program_id)\n",
    "        patch_info['project_id'].append(project_id)\n",
    "\n",
    "        path = '/'.join(patches[0]['filename'].split('/')[6:])\n",
    "\n",
    "        res['path'].append(path)\n",
    "        res['source'].append(code)\n",
    "        res['target'].append(get_ground_truth(bug_id,path))\n",
    "        i = 0\n",
    "        for patch in patches:\n",
    "            try:\n",
    "                #print(patch.keys())\n",
    "                #print(patch['oldcode'])\n",
    "                patch_code = stringfycode.stringfyNode(stringfycode.getroottree(patch['code'].split()).child[0]).strip().replace('<string>','\"String\"')\n",
    "                #input()\n",
    "            except Exception:\n",
    "                #print(\"PATCH CODE: --\",patch['code'],'--')\n",
    "                #print(\"Failed\")\n",
    "                patch_code = ''\n",
    "            patch_info['patch_{}'.format(i)].append(patch_code)\n",
    "            i = i+1\n",
    "        while i != max_patch_count:\n",
    "            patch_info['patch_{}'.format(i)].append('None')\n",
    "            i+=1\n",
    "    pd.DataFrame(data=res).to_csv(f'input_recoder_{dataset_name}.csv')\n",
    "    pd.DataFrame(data=patch_info).to_csv(f'output_recoder_{dataset_name}.csv')\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/plot/MultiplePiePlot.java\n",
      "src/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Check out program version: Chart-12f....................................... OK\n",
      "Checking out 9be86f67 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 9be86f67:8de8a3b6..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-85f........................................ OK\n",
      "Checking out e6449ccc to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/java/org/apache/commons/math/complex/Complex.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff e6449ccc:704342d6..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-96f........................................ OK\n",
      "Checking out c04cd233 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/java/org/apache/commons/lang/text/StrBuilder.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff c04cd233:38f8bcc6..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-59f........................................ OK\n",
      "Checking out a96e5978 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/java/org/apache/commons/math/util/MathUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff a96e5978:ee88057b..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-94f........................................ OK\n",
      "Checking out c17169c2 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/org/mockito/internal/stubbing/defaultanswers/ReturnsEmptyValues.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff c17169c2:585b06d8..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Mockito-24f..................................... OK\n",
      "Checking out ec4a34c2 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/TypedScopeCreator.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff ec4a34c2:7433d30a..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-70f..................................... OK\n",
      "Checking out 520f36b4 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/genetics/ListPopulation.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 520f36b4:b91b3efb..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-34f........................................ OK\n",
      "Checking out b12d1d64 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/LightweightMessageFormatter.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff b12d1d64:1e070472..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-62f..................................... OK\n",
      "Checking out c1f2c4e6 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/org/mockito/internal/verification/argumentmatching/ArgumentMatchingTool.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff c1f2c4e6:a663d2fe..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Mockito-38f..................................... OK\n",
      "Checking out 1025 to /home/martin/recoder/temp_dir......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/util/ShapeUtilities.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 1025:1024............................................................. OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-11f....................................... OK\n",
      "Checking out 5909c3db to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CodeGenerator.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 5909c3db:d7907296..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-52f..................................... OK\n",
      "Checking out 5f2077bb to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/fraction/Fraction.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 5f2077bb:d3fc5af3..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-27f........................................ OK\n",
      "Checking out 190 to /home/martin/recoder/temp_dir.......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/renderer/GrayPaintScale.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 190:188............................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-24f....................................... OK\n",
      "Checking out db1fdf97 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CheckAccessControls.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff db1fdf97:c498ecb7..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-71f..................................... OK\n",
      "Checking out f41fcd85 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff f41fcd85:f184aeb7..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-70f........................................ OK\n",
      "Checking out 2266 to /home/martin/recoder/temp_dir......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/renderer/category/AbstractCategoryItemRenderer.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 2266:2264............................................................. OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-1f........................................ OK\n",
      "Checking out 45add3a0 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/optimization/fitting/GaussianFitter.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 45add3a0:b1392325..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-58f........................................ OK\n",
      "Checking out 523df0c1 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/stat/Frequency.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 523df0c1:39e2ad8a..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-75f........................................ OK\n",
      "Checking out aa2bd1d0 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/distribution/MultivariateNormalDistribution.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff aa2bd1d0:02f64e73..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-11f........................................ OK\n",
      "Checking out 88c76d20 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/java/org/apache/commons/lang/text/StrBuilder.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 88c76d20:1313a65c..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-61f........................................ OK\n",
      "Checking out 1083 to /home/martin/recoder/temp_dir......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/data/time/TimeSeries.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 1083:1082............................................................. OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-9f........................................ OK\n",
      "Checking out 8980b600 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 8980b600:39dde4ca..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-92f..................................... OK\n",
      "Checking out 00fea9d8 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/stat/clustering/KMeansPlusPlusClusterer.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 00fea9d8:d3892cb8..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-57f........................................ OK\n",
      "Checking out 3ba9ba79 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Copy generated Ant build file.............................................. OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/joda/time/Partial.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 3ba9ba79:bcb04466..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Time-4f......................................... OK\n",
      "Checking out 9fac3ccd to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CollapseProperties.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 9fac3ccd:8a37f108..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-130f.................................... OK\n",
      "Checking out 822 to /home/martin/recoder/temp_dir.......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/block/BorderArrangement.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 822:817............................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-13f....................................... OK\n",
      "Checking out a2711c18 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/stat/correlation/PearsonsCorrelation.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff a2711c18:72728264..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-69f........................................ OK\n",
      "Checking out ee834409 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CodeGenerator.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff ee834409:760bded3..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-73f..................................... OK\n",
      "Checking out 13c7f19a to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 13c7f19a:a145b6d8..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-16f........................................ OK\n",
      "Checking out 1065 to /home/martin/recoder/temp_dir......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/imagemap/StandardToolTipTagFragmentGenerator.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 1065:1064............................................................. OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-10f....................................... OK\n",
      "Checking out 3ef79313 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/optimization/linear/SimplexTableau.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 3ef79313:e5c7e405..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-33f........................................ OK\n",
      "Checking out cff0f1ae to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/lang3/text/translate/CharSequenceTranslator.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff cff0f1ae:6823c374..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-6f......................................... OK\n",
      "Checking out 918f0a5a to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/org/mockito/internal/matchers/Same.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 918f0a5a:df41fbe0..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Mockito-29f..................................... OK\n",
      "Checking out fc21b26f to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/java/org/apache/commons/math/stat/regression/SimpleRegression.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff fc21b26f:ab1b9500..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-105f....................................... OK\n",
      "Checking out 3ced4f2a to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/linear/EigenDecompositionImpl.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 3ced4f2a:7d903ca5..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-80f........................................ OK\n",
      "Checking out c0b655ac to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/distribution/HypergeometricDistribution.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff c0b655ac:ad5c90bb..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-2f......................................... OK\n",
      "Checking out 8b1a8e17 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/java/org/apache/commons/lang/StringUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 8b1a8e17:c72adf1b..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-40f........................................ OK\n",
      "Checking out 82c5e4f9 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/joda/time/DateTimeZone.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 82c5e4f9:a92450e8..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Time-19f........................................ OK\n",
      "Checking out e54a1c92 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/complex/Complex.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff e54a1c92:f5bcba81..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-5f......................................... OK\n",
      "Checking out 4ece1884 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/optimization/linear/SimplexSolver.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 4ece1884:f36be8e8..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-82f........................................ OK\n",
      "Checking out 0603aef5 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/lang3/ClassUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 0603aef5:575be164..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-33f........................................ OK\n",
      "Checking out f759f431 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/ClosureCodingConvention.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff f759f431:2d3b9a6c..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-57f..................................... OK\n",
      "Checking out 706513d5 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/joda/time/format/DateTimeFormatter.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 706513d5:dba7c37e..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Time-16f........................................ OK\n",
      "Checking out 0907b661 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/NodeUtil.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 0907b661:5cd9c1ef..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-86f..................................... OK\n",
      "Checking out e8cebe01 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/org/mockito/internal/invocation/InvocationMatcher.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff e8cebe01:0ebc2ea0..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Mockito-34f..................................... OK\n",
      "Checking out 8cef0018 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/TypeCheck.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 8cef0018:ddc12998..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-125f.................................... OK\n",
      "Checking out 75d5b74a to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/lang3/time/FastDateFormat.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 75d5b74a:e67792f8..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-26f........................................ OK\n",
      "Checking out 5dcca480 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/util/FastMath.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 5dcca480:ffcaeb07..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-59f........................................ OK\n",
      "Checking out 55f64272 to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/lang3/time/DateUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 55f64272:a473984e..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-21f........................................ OK\n",
      "Checking out 8d11b8cc to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CodeGenerator.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 8d11b8cc:60dac870..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-123f.................................... OK\n",
      "Checking out ea119a2d to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/Compiler.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff ea119a2d:686146c4..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-18f..................................... OK\n",
      "Checking out 0884a4cb to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/NodeUtil.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 0884a4cb:f681fd80..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-10f..................................... OK\n",
      "Checking out d2a5bc02 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/util/MathUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff d2a5bc02:91b44a1e..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-63f........................................ OK\n",
      "Checking out f81847d8 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/geometry/euclidean/twod/PolygonsSet.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff f81847d8:8d647834..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-32f........................................ OK\n",
      "Checking out 8cf08115 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CodeConsumer.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 8cf08115:f067d0e1..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-38f..................................... OK\n",
      "Checking out a25e7f7a to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff a25e7f7a:631c5bcb..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-30f........................................ OK\n",
      "Checking out 81903abb to /home/martin/recoder/temp_dir..................... OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 81903abb:d61f50a3..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Lang-24f........................................ OK\n",
      "Checking out a02241e5 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/CodeConsumer.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff a02241e5:44c2d711..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-51f..................................... OK\n",
      "Checking out 882556ea to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/main/java/org/apache/commons/math/stat/descriptive/moment/Variance.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 882556ea:91e6ac58..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Math-41f........................................ OK\n",
      "Checking out 67289ae4 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/rhino/jstype/UnionType.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 67289ae4:1be1c263..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-104f.................................... OK\n",
      "Checking out 1085 to /home/martin/recoder/temp_dir......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/data/time/Week.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 1085:1084............................................................. OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-8f........................................ OK\n",
      "Checking out 4b15b25f to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/ControlFlowAnalysis.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 4b15b25f:b7c2861b..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-14f..................................... OK\n",
      "Checking out 0fb76a81 to /home/martin/recoder/temp_dir..................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 0fb76a81:fa1e469d..................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Closure-113f.................................... OK\n",
      "Checking out 283 to /home/martin/recoder/temp_dir.......................... "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "source/org/jfree/chart/plot/ValueMarker.java\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "OK\n",
      "Init local repository...................................................... OK\n",
      "Tag post-fix revision...................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Run post-checkout hook..................................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Excluding broken/flaky tests............................................... OK\n",
      "Initialize fixed program version........................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Initialize buggy program version........................................... OK\n",
      "Diff 283:281............................................................... OK\n",
      "Apply patch................................................................ OK\n",
      "Tag pre-fix revision....................................................... OK\n",
      "Check out program version: Chart-20f....................................... OK\n"
     ]
    }
   ],
   "source": [
    "def ground_truth_defects4j(bug_id,path):\n",
    "    project,bug = bug_id.split('-')\n",
    "    print(path)\n",
    "    os.system(f'~/defects4j/framework/bin/defects4j checkout -p {project} -v {bug}f -w temp_dir')\n",
    "    x = ''\n",
    "    with open(os.path.join('temp_dir',path)) as f:\n",
    "        x = f.read()\n",
    "    os.system('rm -rf temp_dir')\n",
    "    return x\n",
    "    \n",
    "process_inference_results('defects4j',ground_truth_defects4j)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [],
   "source": [
    "def ground_truth_quixbugs(bug_id,path):\n",
    "    with open(os.path.join('quixbugs_correct_java_programs',path)) as f:\n",
    "        x = f.read()\n",
    "    return x\n",
    "process_inference_results('quixbugs',ground_truth_quixbugs)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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