Buggy code:
public class GitRemoteSyncConnection { private final int MAX_FILES = 100 ; private static final String remoteProjectName = "eclipse_auto" ; private static final String commitMessage = Messages . GRSC_CommitMessage ; public static final String gitDir = ".ptp-sync" ; private static final String gitCommand = ( "git<seq2seq4repair_space>--git-dir=" + ( GitRemoteSyncConnection . gitDir ) ) + "<seq2seq4repair_space>--work-tree=." ; private static final String remotePushBranch = "ptp-push" ; private final IRemoteConnection connection ; private final SyncFileFilter fileFilter ; private final String localDirectory ; private final String remoteDirectory ; private Git git ; private TransportGitSsh transport ; private Map < IPath , String [ ] > FileToMergePartsMap = new HashMap < IPath , String [ ] > ( ) ; public GitRemoteSyncConnection ( IRemoteConnection conn , String localDir , String remoteDir , SyncFileFilter filter , IProgressMonitor monitor ) throws RemoteSyncException { } private RemoteConfig buildRemoteConfig ( StoredConfig config ) { } private Git buildRepo ( IProgressMonitor monitor ) throws IOException , RemoteExecutionException , RemoteSyncException { } private boolean doRemoteInit ( IProgressMonitor monitor ) throws IOException , RemoteExecutionException , RemoteSyncException { } private boolean prepareRemoteForCommit ( IProgressMonitor monitor , boolean includeUntrackedFiles ) throws RemoteSyncException { } private void commitRemoteFiles ( IProgressMonitor monitor ) throws RemoteSyncException { } private void deleteRemoteFiles ( Set < String > filesToDelete , IProgressMonitor monitor ) throws IOException , RemoteExecutionException , RemoteSyncException { } private List < String > stringToList ( String command ) { } private void addRemoteFiles ( Set < String > filesToAdd , IProgressMonitor monitor ) throws IOException , RemoteExecutionException , RemoteSyncException { } private void getRemoteFileStatus ( Set < String > filesToAdd , Set < String > filesToDelete , IProgressMonitor monitor , boolean includeUntrackedFiles ) throws IOException , RemoteExecutionException , RemoteSyncException { } private void getFileStatus ( Set < String > filesToAdd , Set < String > filesToDelete , boolean includeUntrackedFiles ) throws RemoteSyncException { } public class PTPSession implements RemoteSession { private final URIish uri ; public PTPSession ( URIish uri ) { } public Process exec ( String command , int timeout ) throws TransportException { } public void disconnect ( ) { } } private void buildTransport ( RemoteConfig remoteConfig ) { } private URIish buildURI ( ) { } public void close ( ) { } private boolean doCommit ( ) throws RemoteSyncException { } private void readMergeConflictFiles ( ) throws RemoteSyncException { } public IRemoteConnection getConnection ( ) { } public String getLocalDirectory ( ) { } public String getRemoteDirectory ( ) { } public void syncLocalToRemote ( IProgressMonitor monitor ) throws RemoteSyncException { } public void syncRemoteToLocal ( IProgressMonitor monitor , boolean includeUntrackedFiles ) throws RemoteSyncException { } public void sync ( IProgressMonitor monitor , boolean includeUntrackedFiles ) throws RemoteSyncException { } public Set < IPath > getMergeConflictFiles ( ) { } public String [ ] getMergeConflictParts ( IFile localFile ) { <START_BUG> return FileToMergePartsMap . get ( localFile . getLocation ( ) ) ; <END_BUG> } }

Fix:
return FileToMergePartsMap . get ( localFile . getFullPath ( ) . removeFirstSegments ( 1 ) ) ;