Buggy code:
public class SAEEvaluationServiceImpl implements ApplicationContextAware { private AdverseEventRecommendedReportDao adverseEventRecommendedReportDao ; private StudyDao studyDao ; private TreatmentAssignmentDao treatmentAssignmentDao ; private ParticipantDao participantDao ; private StudyParticipantAssignmentDao studyParticipantAssignmentDao ; private SAEAdverseEventReportingPeriodConverter reportingPeriodConverter ; private ReportDefinitionDao reportDefinitionDao ; private NowFactory nowFactory ; private AdverseEventManagementServiceImpl adverseEventManagementService ; private EvaluationService evaluationService ; private ApplicationContext applicationContext ; private MessageSource messageSource ; private AdverseEventConverter converter ; private RecommendedActionService recommendedActionService ; private enum RequestType { SaveEvaluate , Evaluate ; } private static String DEF_ERR_MSG = "Error<seq2seq4repair_space>evaluating<seq2seq4repair_space>adverse<seq2seq4repair_space>events<seq2seq4repair_space>with<seq2seq4repair_space>SAE<seq2seq4repair_space>rules" ; private static Log logger = LogFactory . getLog ( SAEEvaluationServiceImpl . class ) ; public SaveAndEvaluateAEsOutputMessage saveAndProcessAdverseEvents ( SaveAndEvaluateAEsInputMessage saveAndEvaluateAEsInputMessage ) throws CaaersFault { } public EvaluateAEsOutputMessage processAdverseEvents ( EvaluateAEsInputMessage evaluateAEsInputMessage ) throws CaaersFault { } public EvaluateAEsOutputMessage processAdverseEvents ( String studyId , AdverseEvents adverseEvents , StudyParticipantAssignment assignment , String tacCode ) throws CaaersFault { } private TreatmentAssignment resolveTreatmentAssignment ( String tacCode , Study study ) { } private AEsOutputMessage fireSAERules ( AdverseEventReportingPeriod reportingPeriod , Study study , Map < AdverseEvent , AdverseEventResult > mapAE2DTO , SAEEvaluationServiceImpl . RequestType requestType , AEsOutputMessage response ) throws CaaersFault { } private void populateActionTextAndDueDate ( AEsOutputMessage response ) { } private void refreshReportIndexMap ( Map < Integer , ExpeditedAdverseEventReport > aeReportIndexMap ) { } private void findRecommendedActions ( EvaluationResultDTO evaluationResult , AdverseEventReportingPeriod reportingPeriod , SaveAndEvaluateAEsOutputMessage response ) { } private ReportTableRow findApplicableRow ( List < ReportTableRow > applicableRows , String reportName ) { } private List < ReportTableRow > findPreSelectedRows ( List < ReportTableRow > applicableRows ) { } private boolean isAnyInGroupChecked ( ReportTableRow row , List < ReportTableRow > preselectedRows ) { } private RecommendedActions returnActionFromRow ( ReportTableRow row , List < ReportTableRow > preselectedRows ) { } private boolean findMatchingRecommendedRow ( Map < Integer , List < ReportTableRow > > recommendedReportTableMap , ReportTableRow ignoredRow ) { } private List < ReportTableRow > getListOfIgnoredRows ( Map < Integer , List < ReportTableRow > > recommendedReportTableMap ) { } private boolean isMatchedIgnoredRow ( List < ReportTableRow > ignoredRows , ReportTableRow recommRow ) { } private void findMatchingRecommendations ( List < ReportTableRow > applicableRows , List < ReportTableRow > recommRows , List < RecommendedActions > recommendedActions , List < ReportTableRow > ignoredRows ) { } public AdverseEventResult findAdverseEvent ( AdverseEvent thatAe , Map < AdverseEvent , AdverseEventResult > mapAE2DTO ) { } private String constructLinkToReport ( int studyId , int participantId , int rpId ) { } private AEsOutputMessage createResponseObject ( SAEEvaluationServiceImpl . RequestType requestType ) { } public AdverseEventConverter getConverter ( ) { } public void setConverter ( AdverseEventConverter converter ) { } private Study fetchStudy ( String identifier ) { } private void manageAdverseEventRecommendedReports ( SAEEvaluationServiceImpl . RequestType requestType , EvaluationResultDTO dto ) { <START_BUG> Map < AdverseEvent , List < ReportDefinition > > adverseEventReportDefinitionMap = dto . getAdverseEventRecommendedReportsMap ( ) ; <END_BUG> for ( Map . Entry < AdverseEvent , List < ReportDefinition > > entry : adverseEventReportDefinitionMap . entrySet ( ) ) { AdverseEvent ae = entry . getKey ( ) ; List < ReportDefinition > rds = entry . getValue ( ) ; if ( ( rds != null ) && ( ( rds . size ( ) ) > 0 ) ) { Iterator < ReportDefinition > reportDefinitionIterator = rds . iterator ( ) ; while ( reportDefinitionIterator . hasNext ( ) ) { ReportDefinition reportDefinition = reportDefinitionIterator . next ( ) ; AdverseEventRecommendedReport aeRecomReport ; List < AdverseEventRecommendedReport > dbAeRecomReports = adverseEventRecommendedReportDao . searchAdverseEventRecommendedReportsByAdverseEvent ( ae ) ; if ( ( dbAeRecomReports != null ) && ( ! ( dbAeRecomReports . isEmpty ( ) ) ) ) { aeRecomReport = dbAeRecomReports . get ( 0 ) ; if ( ( ! ( reportDefinition . getOrganization ( ) . equals ( aeRecomReport . getReportDefinition ( ) . getOrganization ( ) ) ) ) || ( ! ( reportDefinition . getGroup ( ) . equals ( aeRecomReport . getReportDefinition ( ) . getGroup ( ) ) ) ) ) { aeRecomReport . setAeReported ( false ) ; } } else { aeRecomReport = new AdverseEventRecommendedReport ( ) ; aeRecomReport . setAdverseEvent ( ae ) ; aeRecomReport . setAeReported ( false ) ; } aeRecomReport . setReportDefinition ( reportDefinition ) ; aeRecomReport . setDueDate ( reportDefinition . getExpectedDueDate ( ae . getGradedDate ( ) ) ) ; adverseEventRecommendedReportDao . save ( aeRecomReport ) ; } } else { List < AdverseEventRecommendedReport > dbAeRecomReports = adverseEventRecommendedReportDao . searchAdverseEventRecommendedReportsByAdverseEvent ( ae ) ; if ( ( dbAeRecomReports != null ) && ( ! ( dbAeRecomReports . isEmpty ( ) ) ) ) { AdverseEventRecommendedReport aeRecomReport = dbAeRecomReports . get ( 0 ) ; adverseEventRecommendedReportDao . delete ( aeRecomReport ) ; } } } } public ParticipantDao getParticipantDao ( ) { } public void setParticipantDao ( ParticipantDao participantDao ) { } public AdverseEventManagementServiceImpl getAdverseEventManagementService ( ) { } public void setAdverseEventManagementService ( AdverseEventManagementServiceImpl adverseEventManagementService ) { } public void setApplicationContext ( ApplicationContext applicationContext ) throws BeansException { } public StudyDao getStudyDao ( ) { } public void setStudyDao ( StudyDao studyDao ) { } public TreatmentAssignmentDao getTreatmentAssignmentDao ( ) { } public void setTreatmentAssignmentDao ( TreatmentAssignmentDao treatmentAssignmentDao ) { } public EvaluationService getAdverseEventEvaluationService ( ) { } public void setAdverseEventEvaluationService ( EvaluationService evaluationService ) { } public MessageSource getMessageSource ( ) { } public void setMessageSource ( MessageSource messageSource ) { } public StudyParticipantAssignmentDao getStudyParticipantAssignmentDao ( ) { } public void setStudyParticipantAssignmentDao ( StudyParticipantAssignmentDao studyParticipantAssignmentDao ) { } public SAEAdverseEventReportingPeriodConverter getReportingPeriodConverter ( ) { } public void setReportingPeriodConverter ( SAEAdverseEventReportingPeriodConverter reportingPeriodConverter ) { } public RecommendedActionService getRecommendedActionService ( ) { } public void setRecommendedActionService ( RecommendedActionService recommendedActionService ) { } public void setAdverseEventRecommendedReportDao ( AdverseEventRecommendedReportDao adverseEventRecommendedReportDao ) { } public void setNowFactory ( NowFactory nowFactory ) { } public void setReportDefinitionDao ( ReportDefinitionDao reportDefinitionDao ) { } }

Fix:
Map < AdverseEvent , List < ReportDefinition > > adverseEventReportDefinitionMap = evaluationService . getAdverseEventRecommendedReportsMap ( ) ;