Program: 30046
Project: 30046
Buggy source:
private void ensureKeyPairForInstanceAlias() throws IOException, NoSuchAlgorithmException, CertificateException, KeyStoreException, UnrecoverableKeyException, ProcessManagerException {
  final KeyStore ks=sslUtils().getKeyStore();
  if (ks.containsAlias(SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS)) {
    return;
  }
  final File keyStoreFile=serverEnv.getJKS();
  final File trustStoreFile=new File(serverEnv.getConfigDirPath(),"String_Node_Str");
  final String pw=masterPassword();
  final char[] pwChar=pw.toCharArray();
  ProcessManager pm=new ProcessManager(new String[]{"String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str",keyStoreFile.getAbsolutePath(),"String_Node_Str",SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS,"String_Node_Str",getCertificateDN(),"String_Node_Str","String_Node_Str","String_Node_Str",pw,"String_Node_Str",pw});
  pm.execute();
  if (pm.getExitValue() != 0) {
    final String err=pm.getStdout();
    throw new RuntimeException(err);
  }
  final File tempCertFile=new File(serverEnv.getConfigDirPath(),"String_Node_Str");
  tempCertFile.deleteOnExit();
  pm=new ProcessManager(new String[]{"String_Node_Str","String_Node_Str","String_Node_Str",keyStoreFile.getAbsolutePath(),"String_Node_Str",SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS,"String_Node_Str",pw,"String_Node_Str",pw,"String_Node_Str",tempCertFile.getAbsolutePath()});
  pm.execute();
  if (pm.getExitValue() != 0) {
    throw new RuntimeException(pm.getStderr());
  }
  pm=new ProcessManager(new String[]{"String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str",pw,"String_Node_Str",pw,"String_Node_Str",trustStoreFile.getAbsolutePath(),"String_Node_Str",tempCertFile.getAbsolutePath(),"String_Node_Str",SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS});
  pm.execute();
  tempCertFile.delete();
  if (pm.getExitValue() != 0) {
    throw new RuntimeException(pm.getStderr());
  }
  reload(sslUtils().getKeyStore(),keyStoreFile,pw);
  reload(sslUtils().getTrustStore(),serverEnv.getTrustStore(),pw);
}

Fixed version (ground truth):
private void ensureKeyPairForInstanceAlias() throws IOException, NoSuchAlgorithmException, CertificateException, KeyStoreException, UnrecoverableKeyException, ProcessManagerException {
  final KeyStore ks=sslUtils().getKeyStore();
  if (ks.containsAlias(SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS)) {
    return;
  }
  final File keyStoreFile=serverEnv.getJKS();
  final File trustStoreFile=new File(serverEnv.getConfigDirPath(),"String_Node_Str");
  final String pw=masterPassword();
  ProcessManager pm=new ProcessManager(new String[]{"String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str",keyStoreFile.getAbsolutePath(),"String_Node_Str",SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS,"String_Node_Str",getCertificateDN(),"String_Node_Str","String_Node_Str","String_Node_Str",pw,"String_Node_Str",pw});
  pm.execute();
  if (pm.getExitValue() != 0) {
    final String err=pm.getStdout();
    throw new RuntimeException(err);
  }
  final File tempCertFile=new File(serverEnv.getConfigDirPath(),"String_Node_Str");
  tempCertFile.deleteOnExit();
  pm=new ProcessManager(new String[]{"String_Node_Str","String_Node_Str","String_Node_Str",keyStoreFile.getAbsolutePath(),"String_Node_Str",SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS,"String_Node_Str",pw,"String_Node_Str",pw,"String_Node_Str",tempCertFile.getAbsolutePath()});
  pm.execute();
  if (pm.getExitValue() != 0) {
    throw new RuntimeException(pm.getStderr());
  }
  pm=new ProcessManager(new String[]{"String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str","String_Node_Str",pw,"String_Node_Str",pw,"String_Node_Str",trustStoreFile.getAbsolutePath(),"String_Node_Str",tempCertFile.getAbsolutePath(),"String_Node_Str",SecureAdmin.Duck.DEFAULT_INSTANCE_ALIAS});
  pm.execute();
  if (!tempCertFile.delete()) {
    logger.log(Level.FINE,"String_Node_Str",tempCertFile.getAbsolutePath());
  }
  if (pm.getExitValue() != 0) {
    throw new RuntimeException(pm.getStderr());
  }
  reload(sslUtils().getKeyStore(),keyStoreFile,pw);
  reload(sslUtils().getTrustStore(),serverEnv.getTrustStore(),pw);
}