Program: 90032
Project: 90032
Buggy source:
/** 
 * Uploads the job directory to the archive location.
 * @param jobId The job id.
 * @throws GenieException if there is any problem
 */
public void processJobDir(final String jobId) throws GenieException {
  try {
    log.debug("String_Node_Str");
    final Job job=this.jobSearchService.getJob(jobId);
    final String jobWorkingDir=this.baseWorkingDir + JobConstants.FILE_PATH_DELIMITER + jobId;
    if (StringUtils.isNotBlank(job.getArchiveLocation())) {
      final String localArchiveFile=jobWorkingDir + JobConstants.FILE_PATH_DELIMITER + "String_Node_Str"+ jobId+ "String_Node_Str";
      final CommandLine commandLine=new CommandLine("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument(localArchiveFile);
      commandLine.addArgument("String_Node_Str");
      executor.setWorkingDirectory(new File(jobWorkingDir));
      executor.execute(commandLine);
      this.genieFileTransferService.putFile(localArchiveFile,job.getArchiveLocation());
      if (deleteArchiveFile) {
        try {
          new File(localArchiveFile).delete();
        }
 catch (        Exception e) {
          log.error("String_Node_Str",jobId,e);
          this.archiveFileDeletionFailure.increment();
        }
      }
    }
    if (deleteDependencies) {
      try {
        final String applicationsDependenciesRegex=jobWorkingDir + JobConstants.FILE_PATH_DELIMITER + "String_Node_Str";
        final CommandLine deleteCommand=new CommandLine("String_Node_Str");
        deleteCommand.addArgument("String_Node_Str");
        deleteCommand.addArgument("String_Node_Str");
        deleteCommand.addArgument(applicationsDependenciesRegex);
        executor.execute(deleteCommand);
      }
 catch (      Exception e) {
        log.error("String_Node_Str",jobId,e);
        this.deleteDependenciesFailure.increment();
      }
    }
  }
 catch (  Exception e) {
    log.error("String_Node_Str",jobId,e);
    this.archivalFailureRate.increment();
  }
}

Fixed version (ground truth):
/** 
 * Uploads the job directory to the archive location.
 * @param jobId The job id.
 * @throws GenieException if there is any problem
 */
public void processJobDir(final String jobId) throws GenieException {
  try {
    log.debug("String_Node_Str");
    final Job job=this.jobSearchService.getJob(jobId);
    final String jobWorkingDir=this.baseWorkingDir + JobConstants.FILE_PATH_DELIMITER + jobId;
    if (deleteDependencies) {
      try {
        log.debug("String_Node_Str");
        final String applicationsDependenciesRegex=jobWorkingDir + JobConstants.FILE_PATH_DELIMITER + "String_Node_Str";
        final CommandLine deleteCommand=new CommandLine("String_Node_Str");
        deleteCommand.addArgument("String_Node_Str");
        deleteCommand.addArgument("String_Node_Str");
        deleteCommand.addArgument(applicationsDependenciesRegex);
        log.debug("String_Node_Str",deleteCommand.toString());
        executor.execute(deleteCommand);
      }
 catch (      Exception e) {
        log.error("String_Node_Str",jobId,e);
        this.deleteDependenciesFailure.increment();
      }
    }
    if (StringUtils.isNotBlank(job.getArchiveLocation())) {
      log.debug("String_Node_Str");
      final String localArchiveFile=jobWorkingDir + JobConstants.FILE_PATH_DELIMITER + "String_Node_Str"+ jobId+ "String_Node_Str";
      final CommandLine commandLine=new CommandLine("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument("String_Node_Str");
      commandLine.addArgument(localArchiveFile);
      commandLine.addArgument("String_Node_Str");
      executor.setWorkingDirectory(new File(jobWorkingDir));
      log.debug("String_Node_Str",commandLine.toString());
      executor.execute(commandLine);
      this.genieFileTransferService.putFile(localArchiveFile,job.getArchiveLocation());
      if (deleteArchiveFile) {
        log.debug("String_Node_Str");
        try {
          new File(localArchiveFile).delete();
        }
 catch (        Exception e) {
          log.error("String_Node_Str",jobId,e);
          this.archiveFileDeletionFailure.increment();
        }
      }
    }
  }
 catch (  Exception e) {
    log.error("String_Node_Str",jobId,e);
    this.archivalFailureRate.increment();
  }
}