Program: 29930
Project: 29930
Buggy source:
private void modifyInitialDomainXml(DomainConfig domainConfig) throws GlassFishException {
  BootstrapProperties bootstrapProperties=new BootstrapProperties();
  bootstrapProperties.setInstallRoot(domainConfig.getInstallRoot());
  GlassFishRuntime runtime=GlassFishRuntime.bootstrap(bootstrapProperties);
  File domDir=new File(domainConfig.getDomainRoot(),domainConfig.getDomainName());
  File configDir=new File(domDir,"String_Node_Str");
  GlassFishProperties glassFishProperties=new GlassFishProperties();
  glassFishProperties.setConfigFileURI(new File(configDir,"String_Node_Str").toURI().toString());
  glassFishProperties.setConfigFileReadOnly(false);
  glassFishProperties.setProperty(StartupContext.STARTUP_MODULESTARTUP_NAME,"String_Node_Str");
  glassFishProperties.setProperty("String_Node_Str",domainConfig.getDomainName());
  GlassFish glassfish=runtime.newGlassFish(glassFishProperties);
  glassfish.start();
  com.sun.enterprise.config.serverbeans.Server serverConfig=glassfish.getService(com.sun.enterprise.config.serverbeans.Server.class,"String_Node_Str");
  Config config=glassfish.getService(Config.class,serverConfig.getConfigRef());
  DomainContext ctx=new DomainContext();
  ctx.setDomainType("String_Node_Str");
  ctx.setLogger(LogDomains.getLogger(DomainInitializer.class,LogDomains.SERVER_LOGGER));
  Habitat habitat=glassfish.getService(Habitat.class);
  Collection<DomainInitializer> inits=habitat.getAllByContract(DomainInitializer.class);
  if (inits.isEmpty()) {
    logger.info(strings.get("String_Node_Str"));
  }
  for (  DomainInitializer inhabitant : habitat.getAllByContract(DomainInitializer.class)) {
    logger.info(strings.get("String_Node_Str",inhabitant.getClass()));
    Container newContainerConfig=inhabitant.getInitialConfig(ctx);
    config.getContainers().add(newContainerConfig);
  }
  glassfish.dispose();
}

Fixed version (ground truth):
private void modifyInitialDomainXml(DomainConfig domainConfig) throws GlassFishException {
  BootstrapProperties bootstrapProperties=new BootstrapProperties();
  bootstrapProperties.setInstallRoot(domainConfig.getInstallRoot());
  GlassFishRuntime runtime=GlassFishRuntime.bootstrap(bootstrapProperties);
  File domDir=new File(domainConfig.getDomainRoot(),domainConfig.getDomainName());
  File configDir=new File(domDir,"String_Node_Str");
  GlassFishProperties glassFishProperties=new GlassFishProperties();
  glassFishProperties.setConfigFileURI(new File(configDir,"String_Node_Str").toURI().toString());
  glassFishProperties.setConfigFileReadOnly(false);
  glassFishProperties.setProperty(StartupContext.STARTUP_MODULESTARTUP_NAME,"String_Node_Str");
  glassFishProperties.setProperty(SystemPropertyConstants.INSTANCE_ROOT_PROPERTY,domDir.getAbsolutePath());
  glassFishProperties.setProperty("String_Node_Str",domainConfig.getDomainName());
  GlassFish glassfish=runtime.newGlassFish(glassFishProperties);
  glassfish.start();
  com.sun.enterprise.config.serverbeans.Server serverConfig=glassfish.getService(com.sun.enterprise.config.serverbeans.Server.class,"String_Node_Str");
  Config config=glassfish.getService(Config.class,serverConfig.getConfigRef());
  DomainContext ctx=new DomainContext();
  ctx.setDomainType("String_Node_Str");
  ctx.setLogger(LogDomains.getLogger(DomainInitializer.class,LogDomains.SERVER_LOGGER));
  Habitat habitat=glassfish.getService(Habitat.class);
  Collection<DomainInitializer> inits=habitat.getAllByContract(DomainInitializer.class);
  if (inits.isEmpty()) {
    logger.info(strings.get("String_Node_Str"));
  }
  for (  DomainInitializer inhabitant : habitat.getAllByContract(DomainInitializer.class)) {
    logger.info(strings.get("String_Node_Str",inhabitant.getClass()));
    Container newContainerConfig=inhabitant.getInitialConfig(ctx);
    try {
      ConfigSupport.apply((new ConfigCode(){
        @Override @SuppressWarnings("String_Node_Str") public Object run(        ConfigBeanProxy... objects) throws PropertyVetoException, TransactionFailure {
          ((Config)objects[0]).getContainers().add((Container)objects[1]);
          return Boolean.TRUE;
        }
      }
),new ConfigBeanProxy[]{config,newContainerConfig});
    }
 catch (    TransactionFailure e) {
      logger.severe(strings.get("String_Node_Str",inhabitant.getClass()));
    }
  }
  glassfish.dispose();
}