Program: 95678
Project: 95678
Buggy source:
public static ArrayList<ItemStack> getPlantFruits(ItemSeeds seed,World world,int x,int y,int z,int gain,int meta){
  int nr=(int)(Math.ceil((gain + 0.00) / 3));
  Block plant=getPlant(seed);
  ArrayList<ItemStack> items=new ArrayList<ItemStack>();
  if (plant == Blocks.nether_wart) {
    items.add(new ItemStack(seed,1,0));
  }
 else   if (plant instanceof BlockModPlant) {
    items.addAll(((BlockModPlant)plant).getFruit(nr,world.rand));
  }
 else   if (ModIntegration.LoadedMods.natura && getPlantDomain(seed).equalsIgnoreCase("String_Node_Str")) {
    items.add(new ItemStack(NContent.plantItem,nr,meta * 3));
  }
 else   if (ModIntegration.LoadedMods.harvestcraft && getPlantDomain(seed).equalsIgnoreCase("String_Node_Str")) {
    items.add(new ItemStack(getPlant(seed).getItemDropped(7,new Random(),0),nr));
  }
 else   if (ModIntegration.LoadedMods.chococraft && seed instanceof ItemGysahlSeeds) {
    items.add(ChococraftHelper.getFruit(gain,nr));
  }
 else {
    int harvestMeta=7;
    if (ModIntegration.LoadedMods.plantMegaPack && getPlantDomain(seed).equalsIgnoreCase("String_Node_Str")) {
      harvestMeta=PlantMegaPackHelper.getTextureIndex(seed,harvestMeta);
    }
    ArrayList<ItemStack> defaultDrops=plant.getDrops(world,x,y,z,harvestMeta,0);
    for (    ItemStack drop : defaultDrops) {
      if (!(drop.getItem() instanceof ItemSeeds) && drop.getItem() != null) {
        boolean add=true;
        for (        ItemStack item : items) {
          if (item.getItem() == drop.getItem() && item.getItemDamage() == drop.getItemDamage()) {
            add=false;
          }
        }
        if (add) {
          items.add(new ItemStack(drop.getItem(),nr,drop.getItemDamage()));
        }
      }
    }
  }
  return items;
}

Fixed version (ground truth):
public static ArrayList<ItemStack> getPlantFruits(ItemSeeds seed,World world,int x,int y,int z,int gain,int meta){
  int nr=(int)(Math.ceil((gain + 0.00) / 3));
  Block plant=getPlant(seed);
  ArrayList<ItemStack> items=new ArrayList<ItemStack>();
  if (plant == Blocks.nether_wart) {
    LogHelper.debug("String_Node_Str");
    items.add(new ItemStack(seed,nr,0));
  }
 else   if (plant instanceof BlockModPlant) {
    LogHelper.debug("String_Node_Str");
    items.addAll(((BlockModPlant)plant).getFruit(nr,world.rand));
  }
 else   if (ModIntegration.LoadedMods.natura && getPlantDomain(seed).equalsIgnoreCase("String_Node_Str")) {
    LogHelper.debug("String_Node_Str");
    items.add(new ItemStack(NContent.plantItem,nr,meta * 3));
  }
 else   if (ModIntegration.LoadedMods.chococraft && seed instanceof ItemGysahlSeeds) {
    LogHelper.debug("String_Node_Str");
    items.add(ChococraftHelper.getFruit(gain,nr));
  }
 else   if (ModIntegration.LoadedMods.psychedelicraft && plant instanceof IvTilledFieldPlant) {
    LogHelper.debug("String_Node_Str");
  }
 else {
    LogHelper.debug("String_Node_Str");
    addFruitsFromOreDict(items,seed,meta,world.rand,nr);
  }
  if (items.size() == 0) {
    LogHelper.debug("String_Node_Str");
    int harvestMeta=7;
    if (ModIntegration.LoadedMods.plantMegaPack && getPlantDomain(seed).equalsIgnoreCase("String_Node_Str")) {
      harvestMeta=PlantMegaPackHelper.getTextureIndex(seed,harvestMeta);
    }
    addFruitsFromPlant(items,plant,world,x,y,z,harvestMeta,nr);
  }
  return items;
}