Program: 9530
Project: 9530
Buggy source:
/** 
 * @param args
 * @throws IOException 
 * @throws JWNLException 
 * @throws InterruptedException 
 * @throws ClassNotFoundException 
 * @throws SQLException 
 */
public static void main(String[] args) throws IOException, JWNLException, InterruptedException, ClassNotFoundException, SQLException {
  System.out.println("String_Node_Str");
  long startInitTime=System.currentTimeMillis();
  BasicTemplator btemplator=new BasicTemplator();
  SQLiteIndex myindex=new SQLiteIndex();
  WordNet wordnet=new WordNet();
  StanfordLemmatizer lemmatiser=new StanfordLemmatizer();
  long stopInitTime=System.currentTimeMillis();
  System.out.println("String_Node_Str" + (stopInitTime - startInitTime) + "String_Node_Str");
  boolean schleife=true;
  boolean doing=true;
  while (schleife == true) {
    BufferedReader in=new BufferedReader(new InputStreamReader(System.in));
    String line;
    doing=true;
    try {
      System.out.println("String_Node_Str");
      System.out.println("String_Node_Str");
      line=in.readLine();
      if (line.contains("String_Node_Str")) {
        schleife=false;
        System.out.println("String_Node_Str");
        System.exit(0);
      }
      if (line.contains("String_Node_Str") && schleife == true) {
        TimeZone.setDefault(TimeZone.getTimeZone("String_Node_Str"));
        line="String_Node_Str";
        ArrayList<queryInformation> list_of_structs=new ArrayList<queryInformation>();
        list_of_structs=generateStruct(line,true);
        long startTime=System.currentTimeMillis();
        int anzahl=0;
        int anzahl_query_with_answers=0;
        int yago_querys=0;
        for (        queryInformation qi : list_of_structs) {
          anzahl=anzahl + 1;
          System.out.println("String_Node_Str");
          if (qi.getId() == "String_Node_Str" || qi.getId() == null)           System.out.println("String_Node_Str");
          String question=qi.getQuery();
          ArrayList<String> answers=MainInterface.startQuestioning(question,btemplator,myindex,wordnet,lemmatiser);
          qi.setResult(answers);
        }
        String systemid="String_Node_Str";
        systemid=createXML(list_of_structs);
        String filename_for_evaluation="String_Node_Str" + systemid.replace("String_Node_Str","String_Node_Str") + "String_Node_Str";
        String execute="String_Node_Str" + filename_for_evaluation + "String_Node_Str";
        System.out.println("String_Node_Str" + execute);
        Runtime r=Runtime.getRuntime();
        Process p=r.exec(execute);
        String open_file="String_Node_Str" + systemid.replace("String_Node_Str","String_Node_Str") + "String_Node_Str";
        execute="String_Node_Str" + open_file;
        p=r.exec(execute);
      }
 else       if (schleife == true && doing == true) {
        long startTime=System.currentTimeMillis();
        queryInformation result=new queryInformation(line,"String_Node_Str","String_Node_Str",false,false,false,"String_Node_Str",false);
        MainInterface.startQuestioning(line,btemplator,myindex,wordnet,lemmatiser);
        ArrayList<String> ergebnis=result.getResult();
        Set<String> setString=new HashSet<String>();
        for (        String i : ergebnis) {
          setString.add(i);
        }
        for (        String z : setString) {
          System.out.println(z);
        }
        long endTime=System.currentTimeMillis();
        System.out.println("String_Node_Str" + (endTime - startTime) + "String_Node_Str");
      }
    }
 catch (    IOException e) {
      e.printStackTrace();
    }
  }
}

Fixed version (ground truth):
/** 
 * @param args
 * @throws IOException 
 * @throws JWNLException 
 * @throws InterruptedException 
 * @throws ClassNotFoundException 
 * @throws SQLException 
 */
public static void main(String[] args) throws IOException, JWNLException, InterruptedException, ClassNotFoundException, SQLException {
  System.out.println("String_Node_Str");
  long startInitTime=System.currentTimeMillis();
  BasicTemplator btemplator=new BasicTemplator();
  SQLiteIndex myindex=new SQLiteIndex();
  WordNet wordnet=new WordNet();
  StanfordLemmatizer lemmatiser=new StanfordLemmatizer();
  long stopInitTime=System.currentTimeMillis();
  System.out.println("String_Node_Str" + (stopInitTime - startInitTime) + "String_Node_Str");
  boolean schleife=true;
  boolean doing=true;
  while (schleife == true) {
    BufferedReader in=new BufferedReader(new InputStreamReader(System.in));
    String line;
    doing=true;
    try {
      System.out.println("String_Node_Str");
      System.out.println("String_Node_Str");
      line=in.readLine();
      if (line.contains("String_Node_Str")) {
        schleife=false;
        System.out.println("String_Node_Str");
        System.exit(0);
      }
      if (line.contains("String_Node_Str") && schleife == true) {
        TimeZone.setDefault(TimeZone.getTimeZone("String_Node_Str"));
        line="String_Node_Str";
        line="String_Node_Str";
        ArrayList<queryInformation> list_of_structs=new ArrayList<queryInformation>();
        list_of_structs=generateStruct(line,true);
        long startTime=System.currentTimeMillis();
        int anzahl=0;
        int anzahl_query_with_answers=0;
        int yago_querys=0;
        for (        queryInformation qi : list_of_structs) {
          anzahl=anzahl + 1;
          System.out.println("String_Node_Str");
          if (qi.getId() == "String_Node_Str" || qi.getId() == null)           System.out.println("String_Node_Str");
          String question=qi.getQuery();
          ArrayList<String> answers=MainInterface.startQuestioning(question,btemplator,myindex,wordnet,lemmatiser);
          qi.setResult(answers);
        }
        String systemid="String_Node_Str";
        systemid=createXML(list_of_structs);
        String filename_for_evaluation="String_Node_Str" + systemid.replace("String_Node_Str","String_Node_Str") + "String_Node_Str";
        String execute="String_Node_Str" + filename_for_evaluation + "String_Node_Str";
        System.out.println("String_Node_Str" + execute);
        Runtime r=Runtime.getRuntime();
        Process p=r.exec(execute);
        String open_file="String_Node_Str" + systemid.replace("String_Node_Str","String_Node_Str") + "String_Node_Str";
        execute="String_Node_Str" + open_file;
        p=r.exec(execute);
      }
 else       if (schleife == true && doing == true) {
        long startTime=System.currentTimeMillis();
        queryInformation result=new queryInformation(line,"String_Node_Str","String_Node_Str",false,false,false,"String_Node_Str",false);
        MainInterface.startQuestioning(line,btemplator,myindex,wordnet,lemmatiser);
        ArrayList<String> ergebnis=result.getResult();
        Set<String> setString=new HashSet<String>();
        for (        String i : ergebnis) {
          setString.add(i);
        }
        for (        String z : setString) {
          System.out.println(z);
        }
        long endTime=System.currentTimeMillis();
        System.out.println("String_Node_Str" + (endTime - startTime) + "String_Node_Str");
      }
    }
 catch (    IOException e) {
      e.printStackTrace();
    }
  }
}