Program: 89496
Project: 89496
Buggy source:
@Override @SuppressWarnings("String_Node_Str") @DB public <M>List<M> customSearchIncludingRemoved(SearchCriteria<M> sc,final Filter filter){
  String clause=sc != null ? sc.getWhereClause() : null;
  if (clause != null && clause.length() == 0) {
    clause=null;
  }
  final StringBuilder str=createPartialSelectSql(sc,clause != null);
  if (clause != null) {
    str.append(clause);
  }
  Collection<JoinBuilder<SearchCriteria<?>>> joins=null;
  if (sc != null) {
    joins=sc.getJoins();
    if (joins != null) {
      addJoins(str,joins);
    }
  }
  List<Object> groupByValues=addGroupBy(str,sc);
  addFilter(str,filter);
  final String sql=str.toString();
  final Transaction txn=Transaction.currentTxn();
  PreparedStatement pstmt=null;
  try {
    pstmt=txn.prepareAutoCloseStatement(sql);
    int i=0;
    if (clause != null) {
      for (      final Pair<Attribute,Object> value : sc.getValues()) {
        prepareAttribute(++i,pstmt,value.first(),value.second());
      }
    }
    if (joins != null) {
      i=addJoinAttributes(i,pstmt,joins);
    }
    if (groupByValues != null) {
      for (      Object value : groupByValues) {
        pstmt.setObject(i++,value);
      }
    }
    ResultSet rs=pstmt.executeQuery();
    SelectType st=sc.getSelectType();
    ArrayList<M> results=new ArrayList<M>();
    List<Field> fields=sc.getSelectFields();
    while (rs.next()) {
      if (st == SelectType.Entity) {
        results.add((M)toEntityBean(rs,false));
      }
 else       if (st == SelectType.Fields || st == SelectType.Result) {
        M m=sc.getResultType().newInstance();
        for (int j=1; j <= fields.size(); j++) {
          setField(m,fields.get(j - 1),rs,j);
        }
        results.add(m);
      }
 else       if (st == SelectType.Single) {
        results.add(getObject(sc.getResultType(),rs,1));
      }
    }
    return results;
  }
 catch (  final SQLException e) {
    throw new CloudRuntimeException("String_Node_Str" + pstmt,e);
  }
catch (  final Throwable e) {
    throw new CloudRuntimeException("String_Node_Str" + pstmt,e);
  }
}

Fixed version (ground truth):
@Override @SuppressWarnings("String_Node_Str") public <M>List<M> customSearchIncludingRemoved(SearchCriteria<M> sc,final Filter filter){
  String clause=sc != null ? sc.getWhereClause() : null;
  if (clause != null && clause.length() == 0) {
    clause=null;
  }
  final StringBuilder str=createPartialSelectSql(sc,clause != null);
  if (clause != null) {
    str.append(clause);
  }
  Collection<JoinBuilder<SearchCriteria<?>>> joins=null;
  if (sc != null) {
    joins=sc.getJoins();
    if (joins != null) {
      addJoins(str,joins);
    }
  }
  List<Object> groupByValues=addGroupBy(str,sc);
  addFilter(str,filter);
  final String sql=str.toString();
  final Transaction txn=Transaction.currentTxn();
  PreparedStatement pstmt=null;
  try {
    pstmt=txn.prepareAutoCloseStatement(sql);
    int i=0;
    if (clause != null) {
      for (      final Pair<Attribute,Object> value : sc.getValues()) {
        prepareAttribute(++i,pstmt,value.first(),value.second());
      }
    }
    if (joins != null) {
      i=addJoinAttributes(i,pstmt,joins);
    }
    if (groupByValues != null) {
      for (      Object value : groupByValues) {
        pstmt.setObject(i++,value);
      }
    }
    ResultSet rs=pstmt.executeQuery();
    SelectType st=sc.getSelectType();
    ArrayList<M> results=new ArrayList<M>();
    List<Field> fields=sc.getSelectFields();
    while (rs.next()) {
      if (st == SelectType.Entity) {
        results.add((M)toEntityBean(rs,false));
      }
 else       if (st == SelectType.Fields || st == SelectType.Result) {
        M m=sc.getResultType().newInstance();
        for (int j=1; j <= fields.size(); j++) {
          setField(m,fields.get(j - 1),rs,j);
        }
        results.add(m);
      }
 else       if (st == SelectType.Single) {
        results.add(getObject(sc.getResultType(),rs,1));
      }
    }
    return results;
  }
 catch (  final SQLException e) {
    throw new CloudRuntimeException("String_Node_Str" + pstmt,e);
  }
catch (  final Throwable e) {
    throw new CloudRuntimeException("String_Node_Str" + pstmt,e);
  }
}