Program: 3322
Project: 3322
Buggy source:
public boolean tryShortCircuit(INDArrayIndex... indexes){
  int pointIndex=0;
  int interval=0;
  int newAxis=0;
  int numAll=0;
  int numSpecified=0;
  for (int i=0; i < indexes.length; i++) {
    if (indexes[i] instanceof PointIndex) {
      pointIndex++;
    }
    if (indexes[i] instanceof SpecifiedIndex)     numSpecified++;
 else     if (indexes[i] instanceof IntervalIndex && !(indexes[i] instanceof NDArrayIndexAll))     interval++;
 else     if (indexes[i] instanceof NewAxis)     newAxis++;
 else     if (indexes[i] instanceof NDArrayIndexAll)     numAll++;
  }
  if (numSpecified < 1 && interval < 1 && newAxis < 1 && pointIndex > 0 && numAll > 0) {
    int minDimensions=Math.max(arr.rank() - pointIndex,2);
    int[] shape=new int[minDimensions];
    Arrays.fill(shape,1);
    int[] stride=new int[minDimensions];
    Arrays.fill(stride,arr.elementStride());
    int[] offsets=new int[minDimensions];
    int offset=0;
    int currIndex=0;
    int arrIndex=0;
    for (int i=0; i < indexes.length; i++) {
      if (indexes[i] instanceof NDArrayIndexAll) {
        shape[currIndex]=arr.size(arrIndex);
        stride[currIndex]=arr.stride(arrIndex);
        currIndex++;
        arrIndex++;
      }
 else {
        offset+=indexes[i].offset() * arr.stride(i);
        arrIndex++;
      }
    }
    if (arr.isMatrix() && indexes[0] instanceof PointIndex) {
      shape=ArrayUtil.reverseCopy(shape);
      stride=ArrayUtil.reverseCopy(stride);
    }
    this.strides=stride;
    this.shapes=shape;
    this.offsets=offsets;
    this.offset=offset;
    return true;
  }
 else   if (numSpecified < 1 && interval > 0 && newAxis < 1 && pointIndex < 1 && numAll > 0) {
    int minDimensions=Math.max(arr.rank(),2);
    int[] shape=new int[minDimensions];
    Arrays.fill(shape,1);
    int[] stride=new int[minDimensions];
    Arrays.fill(stride,arr.elementStride());
    int[] offsets=new int[minDimensions];
    for (int i=0; i < shape.length; i++) {
      if (indexes[i] instanceof NDArrayIndexAll) {
        shape[i]=arr.size(i);
        stride[i]=arr.stride(i);
        offsets[i]=indexes[i].offset();
      }
 else       if (indexes[i] instanceof IntervalIndex) {
        shape[i]=indexes[i].length();
        stride[i]=indexes[i].stride() * arr.stride(i);
        offsets[i]=indexes[i].offset();
      }
    }
    this.shapes=shape;
    this.strides=stride;
    this.offsets=offsets;
    this.offset=0;
    for (int i=0; i < indexes.length; i++) {
      offset+=offsets[i] * (stride[i] / indexes[i].stride());
    }
    return true;
  }
 else   if (numSpecified < 1 && interval < 1 && newAxis < 1 && pointIndex < 1 && numAll > 0) {
    int minDimensions=Math.max(arr.rank(),2) + newAxis;
    int[] shape=new int[minDimensions];
    Arrays.fill(shape,1);
    int[] stride=new int[minDimensions];
    Arrays.fill(stride,arr.elementStride());
    int[] offsets=new int[minDimensions];
    int prependNewAxes=0;
    boolean allFirst=false;
    int shapeAxis=0;
    for (int i=0; i < indexes.length; i++) {
      if (indexes[i] instanceof NewAxis) {
        if (allFirst) {
          shape[i]=1;
          stride[i]=0;
        }
 else {
          prependNewAxes++;
        }
      }
 else {
        if (i == 0)         allFirst=true;
        shape[i]=arr.size(shapeAxis + prependNewAxes);
        stride[i]=arr.stride(shapeAxis + prependNewAxes);
        shapeAxis++;
      }
    }
    return true;
  }
  return false;
}

Fixed version (ground truth):
public boolean tryShortCircuit(INDArrayIndex... indexes){
  int pointIndex=0;
  int interval=0;
  int newAxis=0;
  int numAll=0;
  int numSpecified=0;
  for (int i=0; i < indexes.length; i++) {
    if (indexes[i] instanceof PointIndex) {
      pointIndex++;
    }
    if (indexes[i] instanceof SpecifiedIndex)     numSpecified++;
 else     if (indexes[i] instanceof IntervalIndex && !(indexes[i] instanceof NDArrayIndexAll))     interval++;
 else     if (indexes[i] instanceof NewAxis)     newAxis++;
 else     if (indexes[i] instanceof NDArrayIndexAll)     numAll++;
  }
  if (numSpecified < 1 && interval < 1 && newAxis < 1 && pointIndex > 0 && numAll > 0) {
    int minDimensions=Math.max(arr.rank() - pointIndex,2);
    int[] shape=new int[minDimensions];
    Arrays.fill(shape,1);
    int[] stride=new int[minDimensions];
    Arrays.fill(stride,arr.elementStride());
    int[] offsets=new int[minDimensions];
    int offset=0;
    int currIndex=0;
    int arrIndex=0;
    for (int i=0; i < indexes.length; i++) {
      if (indexes[i] instanceof NDArrayIndexAll) {
        shape[currIndex]=arr.size(arrIndex);
        stride[currIndex]=arr.stride(arrIndex);
        currIndex++;
        arrIndex++;
      }
 else {
        offset+=indexes[i].offset() * arr.stride(i);
        arrIndex++;
      }
    }
    if (arr.isMatrix() && indexes[0] instanceof PointIndex) {
      shape=ArrayUtil.reverseCopy(shape);
      stride=ArrayUtil.reverseCopy(stride);
    }
    this.strides=stride;
    this.shapes=shape;
    this.offsets=offsets;
    this.offset=offset;
    return true;
  }
 else   if (numSpecified < 1 && interval > 0 && newAxis < 1 && pointIndex < 1 && numAll > 0) {
    int minDimensions=Math.max(arr.rank(),2);
    int[] shape=new int[minDimensions];
    Arrays.fill(shape,1);
    int[] stride=new int[minDimensions];
    Arrays.fill(stride,arr.elementStride());
    int[] offsets=new int[minDimensions];
    for (int i=0; i < shape.length; i++) {
      if (indexes[i] instanceof NDArrayIndexAll) {
        shape[i]=arr.size(i);
        stride[i]=arr.stride(i);
        offsets[i]=indexes[i].offset();
      }
 else       if (indexes[i] instanceof IntervalIndex) {
        shape[i]=indexes[i].length();
        stride[i]=indexes[i].stride() * arr.stride(i);
        offsets[i]=indexes[i].offset();
      }
    }
    this.shapes=shape;
    this.strides=stride;
    this.offsets=offsets;
    this.offset=0;
    for (int i=0; i < indexes.length; i++) {
      offset+=offsets[i] * (stride[i] / indexes[i].stride());
    }
    return true;
  }
 else   if (numSpecified < 1 && interval < 1 && newAxis < 1 && pointIndex < 1 && numAll > 0) {
    int minDimensions=Math.max(arr.rank(),2) + newAxis;
    int[] shape=new int[minDimensions];
    Arrays.fill(shape,1);
    int[] stride=new int[minDimensions];
    Arrays.fill(stride,arr.elementStride());
    int[] offsets=new int[minDimensions];
    int prependNewAxes=0;
    boolean allFirst=false;
    int shapeAxis=0;
    for (int i=0; i < indexes.length; i++) {
      if (indexes[i] instanceof NewAxis) {
        if (allFirst) {
          shape[i]=1;
          stride[i]=0;
        }
 else {
          prependNewAxes++;
        }
      }
 else {
        if (i == 0)         allFirst=true;
        shape[i]=arr.size(shapeAxis + prependNewAxes);
        stride[i]=arr.stride(shapeAxis + prependNewAxes);
        shapeAxis++;
      }
    }
    this.shapes=shape;
    this.strides=stride;
    this.offsets=offsets;
    return true;
  }
  return false;
}