Program: 40481
Project: 40481
Buggy source:
public CounterTextFileParser(String path,String pokemonName,PokemonRepository pokemonRepository){
  try {
    System.out.println("String_Node_Str" + pokemonName + "String_Node_Str");
    final InputStream inputStream=CounterTextFileParser.class.getResourceAsStream(path + "String_Node_Str" + pokemonName.toLowerCase()+ "String_Node_Str");
    final InputStreamReader inputStreamReader=new InputStreamReader(inputStream);
    BufferedReader br=new BufferedReader(inputStreamReader);
    String line=br.readLine();
    if (!line.contains("String_Node_Str")) {
      throw new IllegalStateException("String_Node_Str");
    }
    boolean supreme=true;
    br.readLine();
    while (line != null) {
      line=br.readLine();
      if (line == null) {
        break;
      }
      line=br.readLine();
      if (line == null) {
        break;
      }
      String counterPokemonName=line.trim();
      if (counterPokemonName != null && counterPokemonName.length() > 0) {
        Set<String> moves=new HashSet<>();
        while (((line=br.readLine()) != null) && !(line.equals("String_Node_Str"))) {
          final String trimmedLine=line.trim();
          final Pokemon pokemon=pokemonRepository.getPokemon(trimmedLine);
          if (pokemon != null) {
            break;
          }
          if ((!trimmedLine.contains("String_Node_Str")) && (!trimmedLine.contains("String_Node_Str"))) {
            moves.add(trimmedLine);
          }
          if (trimmedLine.contains("String_Node_Str")) {
            line=br.readLine();
            supreme=false;
            break;
          }
        }
        CounterPokemon counterPokemon=new CounterPokemon(counterPokemonName,moves);
        if (supreme) {
          System.out.println("String_Node_Str" + counterPokemon);
          bestCounters.add(counterPokemon);
        }
 else {
          System.out.println("String_Node_Str" + counterPokemon);
          goodCounters.add(counterPokemon);
        }
      }
    }
  }
 catch (  Throwable e) {
    throw new RuntimeException(e.getMessage());
  }
}

Fixed version (ground truth):
public CounterTextFileParser(String path,String pokemonName,PokemonRepository pokemonRepository){
  try {
    System.out.println("String_Node_Str" + pokemonName + "String_Node_Str");
    final InputStream inputStream=CounterTextFileParser.class.getResourceAsStream(path + "String_Node_Str" + pokemonName.toLowerCase()+ "String_Node_Str");
    final InputStreamReader inputStreamReader=new InputStreamReader(inputStream);
    BufferedReader br=new BufferedReader(inputStreamReader);
    String line=br.readLine();
    if (!line.contains("String_Node_Str")) {
      throw new IllegalStateException("String_Node_Str");
    }
    boolean supreme=true;
    boolean supremeDone=false;
    br.readLine();
    while (line != null) {
      line=br.readLine();
      if (line == null) {
        break;
      }
      line=br.readLine();
      if (line == null) {
        break;
      }
      String counterPokemonName=line.trim();
      final Pokemon p=pokemonRepository.getByName(counterPokemonName);
      if (p == null) {
        throw new IllegalStateException("String_Node_Str" + counterPokemonName);
      }
      if (counterPokemonName != null && counterPokemonName.length() > 0) {
        Set<String> moves=new HashSet<>();
        while (((line=br.readLine()) != null) && !(line.equals("String_Node_Str"))) {
          final String trimmedLine=line.trim();
          final Pokemon pokemon=pokemonRepository.getPokemon(trimmedLine);
          if (pokemon != null) {
            break;
          }
          if ((!trimmedLine.contains("String_Node_Str")) && (!trimmedLine.contains("String_Node_Str")) && (!trimmedLine.contains("String_Node_Str"))) {
            moves.add(trimmedLine);
          }
          if (trimmedLine.contains("String_Node_Str")) {
            line=br.readLine();
            supremeDone=true;
            break;
          }
        }
        CounterPokemon counterPokemon=new CounterPokemon(counterPokemonName,moves);
        if (supreme) {
          System.out.println("String_Node_Str" + counterPokemon);
          bestCounters.add(counterPokemon);
        }
 else {
          System.out.println("String_Node_Str" + counterPokemon);
          goodCounters.add(counterPokemon);
        }
        if (supremeDone) {
          supreme=false;
        }
      }
    }
  }
 catch (  Throwable e) {
    throw new RuntimeException(e.getMessage());
  }
}