Program: 63728
Project: 63728
Buggy source:
@Override public boolean workCycle(){
  if (tryAddPending())   return false;
  if (!pendingProducts.isEmpty()) {
    setErrorState(EnumErrorCode.NOSPACE);
    return false;
  }
  FluidHelper.drainContainers(tankManager,this,SLOT_CAN);
  ItemStack can=getStackInSlot(SLOT_CAN);
  if (ForestryItem.honeyDrop.isItemEqual(can) && resourceTank.fill(Fluids.HONEY.get(Defaults.FLUID_PER_HONEY_DROP),false) == Defaults.FLUID_PER_HONEY_DROP) {
    setInventorySlotContents(SLOT_CAN,InvTools.depleteItem(can));
    resourceTank.fill(Fluids.HONEY.get(Defaults.FLUID_PER_HONEY_DROP),true);
  }
  ItemStack stackToAnalyze=getStackInSlot(SLOT_ANALYZE);
  if (analyzeTime > 0 && stackToAnalyze != null && AlleleManager.alleleRegistry.isIndividual(stackToAnalyze)) {
    analyzeTime--;
    if (analyzeTime > 0) {
      setErrorState(EnumErrorCode.OK);
      return true;
    }
    IIndividual individual=AlleleManager.alleleRegistry.getIndividual(stackToAnalyze);
    if (individual == null)     return false;
    individual.analyze();
    NBTTagCompound nbttagcompound=new NBTTagCompound();
    individual.writeToNBT(nbttagcompound);
    stackToAnalyze.setTagCompound(nbttagcompound);
    pendingProducts.push(stackToAnalyze);
    setInventorySlotContents(SLOT_ANALYZE,null);
    sendNetworkUpdate();
    return true;
  }
  analyzeTime=0;
  if (stackToAnalyze != null)   return false;
  if (resourceTank.getFluidAmount() < HONEY_REQUIRED) {
    setErrorState(EnumErrorCode.NORESOURCE);
    return false;
  }
  for (  IInvSlot slot : InventoryIterator.getIterable(invInput)) {
    ItemStack inputStack=slot.getStackInSlot();
    if (inputStack == null || !AlleleManager.alleleRegistry.isIndividual(inputStack))     continue;
    IIndividual individual=AlleleManager.alleleRegistry.getIndividual(inputStack);
    if (individual.isAnalyzed()) {
      pendingProducts.push(inputStack);
      slot.setStackInSlot(null);
      continue;
    }
    setInventorySlotContents(SLOT_ANALYZE,inputStack);
    slot.setStackInSlot(null);
    resourceTank.drain(HONEY_REQUIRED,true);
    analyzeTime=TIME_TO_ANALYZE;
    sendNetworkUpdate();
    return true;
  }
  setErrorState(EnumErrorCode.NOTHINGANALYZE);
  return false;
}

Fixed version (ground truth):
@Override public boolean workCycle(){
  ItemStack stackToAnalyze=getStackInSlot(SLOT_ANALYZE);
  if (analyzeTime > 0 && stackToAnalyze != null && AlleleManager.alleleRegistry.isIndividual(stackToAnalyze)) {
    analyzeTime--;
    if (analyzeTime > 0) {
      setErrorState(EnumErrorCode.OK);
      return true;
    }
    IIndividual individual=AlleleManager.alleleRegistry.getIndividual(stackToAnalyze);
    if (individual == null)     return false;
    individual.analyze();
    NBTTagCompound nbttagcompound=new NBTTagCompound();
    individual.writeToNBT(nbttagcompound);
    stackToAnalyze.setTagCompound(nbttagcompound);
    pendingProducts.push(stackToAnalyze);
    setInventorySlotContents(SLOT_ANALYZE,null);
    sendNetworkUpdate();
    return true;
  }
  analyzeTime=0;
  if (stackToAnalyze != null)   return false;
  if (getErrorState() != EnumErrorCode.OK)   return false;
  IInvSlot slot=getInputSlot();
  ItemStack inputStack=slot.getStackInSlot();
  setInventorySlotContents(SLOT_ANALYZE,inputStack);
  slot.setStackInSlot(null);
  resourceTank.drain(HONEY_REQUIRED,true);
  analyzeTime=TIME_TO_ANALYZE;
  sendNetworkUpdate();
  return true;
}