Program: 179636
Project: 179636
Buggy source:
@Override protected List<?> doInBackground(List<?>... params){
  @SuppressWarnings("String_Node_Str") List<Annotation> items=((List<Annotation>)params[0]);
  this.publishProgress(items.size());
  int counter=0;
  if (items.size() > 0) {
    SQLiteDatabase db=this.db.getWritableDatabase();
    if (fullInsert)     db.insert("String_Node_Str",null,con.getContentValues());
    HashMap<String,Integer> lines=new HashMap<String,Integer>();
    if (!fullInsert) {
      HashMap<Integer,String> l=DataProvider.getInstance(null).getProgramLines();
      for (      Integer i : l.keySet()) {
        lines.put(l.get(i),i);
      }
    }
    try {
      db.beginTransaction();
      for (      Annotation annotation : items) {
        if (!lines.containsKey(annotation.getProgramLine())) {
          ContentValues cv=new ContentValues();
          cv.put("String_Node_Str",annotation.getProgramLine());
          cv.put("String_Node_Str",con.getCid());
          int key=(int)db.replace("String_Node_Str",null,cv);
          lines.put(annotation.getProgramLine(),key);
        }
        this.publishProgress(counter++);
        annotation.setLid(lines.get(annotation.getProgramLine()));
        if (this.isCancelled()) {
          Log.d("String_Node_Str","String_Node_Str");
          db.endTransaction();
          return null;
        }
      }
      for (      Annotation annotation : items) {
        ContentValues cv=annotation.getContentValues();
        cv.put("String_Node_Str",con.getCid());
        db.replaceOrThrow("String_Node_Str",null,cv);
        this.publishProgress(counter++);
        if (this.isCancelled()) {
          Log.d("String_Node_Str","String_Node_Str");
          db.endTransaction();
          return null;
        }
      }
      db.setTransactionSuccessful();
    }
 catch (    SQLException e) {
      Log.e("String_Node_Str","String_Node_Str",e);
    }
    db.endTransaction();
  }
  return null;
}

Fixed version (ground truth):
@Override protected List<?> doInBackground(List<?>... params){
  @SuppressWarnings("String_Node_Str") List<Annotation> items=((List<Annotation>)params[0]);
  this.publishProgress(items.size());
  int counter=0;
  if (items.size() > 0) {
    SQLiteDatabase db=this.db.getWritableDatabase();
    db.replace("String_Node_Str",null,con.getContentValues());
    HashMap<String,Integer> lines=new HashMap<String,Integer>();
    if (!fullInsert) {
      HashMap<Integer,String> l=DataProvider.getInstance(null).getProgramLines();
      for (      Integer i : l.keySet()) {
        lines.put(l.get(i),i);
      }
    }
    try {
      db.beginTransaction();
      for (      Annotation annotation : items) {
        if (!lines.containsKey(annotation.getProgramLine())) {
          ContentValues cv=new ContentValues();
          cv.put("String_Node_Str",annotation.getProgramLine());
          cv.put("String_Node_Str",con.getCid());
          int key=(int)db.replace("String_Node_Str",null,cv);
          lines.put(annotation.getProgramLine(),key);
        }
        this.publishProgress(counter++);
        annotation.setLid(lines.get(annotation.getProgramLine()));
        if (this.isCancelled()) {
          Log.d("String_Node_Str","String_Node_Str");
          db.endTransaction();
          return null;
        }
      }
      for (      Annotation annotation : items) {
        ContentValues cv=annotation.getContentValues();
        cv.put("String_Node_Str",con.getCid());
        db.replaceOrThrow("String_Node_Str",null,cv);
        this.publishProgress(counter++);
        if (this.isCancelled()) {
          Log.d("String_Node_Str","String_Node_Str");
          db.endTransaction();
          return null;
        }
      }
      db.setTransactionSuccessful();
    }
 catch (    SQLException e) {
      Log.e("String_Node_Str","String_Node_Str",e);
    }
    db.endTransaction();
  }
  return null;
}