Program: 96857
Project: 96857
Buggy source:
private List<DispoAnnotationData> copyCoverageData(ArtifactReadable source,DispoItem dest,OperationReport report){
  boolean madeChange=false;
  List<String> covearageItems=source.getAttributeValues(CoverageUtil.Item);
  Map<String,Discrepancy> textToDiscrepancyMap=getTextToDiscrepancyMap(dest);
  List<DispoAnnotationData> annotations=dest.getAnnotationsList();
  PropertyStore store=new PropertyStore();
  for (  String covearageItem : covearageItems) {
    try {
      store.load(covearageItem);
    }
 catch (    Exception ex) {
      throw new OseeCoreException(ex);
    }
    if (!store.getId().equals(PROPERTY_STORE_ID)) {
      report.addEntry("String_Node_Str",String.format("String_Node_Str",store.getId()),ERROR);
    }
    String textFromCoverage=store.get("String_Node_Str").trim();
    String lineNumberFromCoverage=store.get("String_Node_Str");
    String resolutionFromCoverage=store.get("String_Node_Str").trim();
    Discrepancy matchedDiscrepancy=textToDiscrepancyMap.get(textFromCoverage);
    if (!resolutionFromCoverage.equalsIgnoreCase("String_Node_Str") && !resolutionFromCoverage.equalsIgnoreCase("String_Node_Str") && matchedDiscrepancy != null) {
      madeChange=true;
      DispoAnnotationData newAnnotation=new DispoAnnotationData();
      newAnnotation.setId(GUID.create());
      newAnnotation.setIsDefault(false);
      newAnnotation.setResolutionType(resolutionFromCoverage);
      newAnnotation.setIsResolutionValid(true);
      newAnnotation.setIndex(annotations.size());
      newAnnotation.setLocationRefs(lineNumberFromCoverage);
      newAnnotation.setCustomerNotes(textFromCoverage);
      newAnnotation.setResolution("String_Node_Str");
      newAnnotation.setDeveloperNotes("String_Node_Str");
      dispoConnector.connectAnnotation(newAnnotation,dest.getDiscrepanciesList());
      annotations.add(newAnnotation.getIndex(),newAnnotation);
    }
 else     if (matchedDiscrepancy == null) {
      report.addEntry(source.getName(),String.format("String_Node_Str",covearageItem),WARNING);
    }
  }
  if (madeChange) {
    return annotations;
  }
 else {
    return Collections.emptyList();
  }
}

Fixed version (ground truth):
private List<DispoAnnotationData> copyCoverageData(ArtifactReadable source,DispoItem dest,OperationReport report){
  boolean madeChange=false;
  List<String> covearageItems=source.getAttributeValues(CoverageUtil.Item);
  Map<String,Discrepancy> textToDiscrepancyMap=getTextToDiscrepancyMap(dest);
  List<DispoAnnotationData> annotations=dest.getAnnotationsList();
  PropertyStore store=new PropertyStore();
  for (  String covearageItem : covearageItems) {
    try {
      store.load(covearageItem);
    }
 catch (    Exception ex) {
      throw new OseeCoreException(ex);
    }
    if (!store.getId().equals(PROPERTY_STORE_ID)) {
      report.addEntry("String_Node_Str",String.format("String_Node_Str",store.getId()),ERROR);
    }
    String textFromCoverage=store.get("String_Node_Str").trim();
    String lineNumberFromCoverage=store.get("String_Node_Str");
    String resolutionFromCoverage=store.get("String_Node_Str").trim();
    String rationale=store.get("String_Node_Str").trim();
    if (!Strings.isValid(rationale)) {
      rationale="String_Node_Str";
    }
    Discrepancy matchedDiscrepancy=textToDiscrepancyMap.get(textFromCoverage);
    if (!resolutionFromCoverage.equalsIgnoreCase("String_Node_Str") && !resolutionFromCoverage.equalsIgnoreCase("String_Node_Str") && matchedDiscrepancy != null) {
      madeChange=true;
      boolean isReplace=false;
      DispoAnnotationData annotationToUpdate=findAnnotation(matchedDiscrepancy.getText(),annotations);
      if (annotationToUpdate == null) {
        annotationToUpdate=new DispoAnnotationData();
        annotationToUpdate.setId(GUID.create());
        annotationToUpdate.setIndex(annotations.size());
        annotationToUpdate.setLocationRefs(lineNumberFromCoverage);
        annotationToUpdate.setCustomerNotes(textFromCoverage);
      }
      if (!annotationToUpdate.getResolutionType().equals(DispoStrings.Test_Unit_Resolution) && !annotationToUpdate.getResolutionType().equals(DispoStrings.Exception_Handling_Resolution)) {
        annotationToUpdate.setIsDefault(false);
        annotationToUpdate.setResolutionType(resolutionFromCoverage);
        annotationToUpdate.setIsResolutionValid(true);
        annotationToUpdate.setResolution(rationale);
        annotationToUpdate.setDeveloperNotes("String_Node_Str");
        dispoConnector.connectAnnotation(annotationToUpdate,dest.getDiscrepanciesList());
        if (isReplace) {
          annotations.set(annotationToUpdate.getIndex(),annotationToUpdate);
        }
 else {
          annotations.add(annotationToUpdate.getIndex(),annotationToUpdate);
        }
      }
    }
 else     if (matchedDiscrepancy == null) {
      report.addEntry(source.getName(),String.format("String_Node_Str",covearageItem),WARNING);
    }
  }
  if (madeChange) {
    return annotations;
  }
 else {
    return Collections.emptyList();
  }
}