Program: 80228
Project: 80228
Buggy source:
@Override public void applyInitialRegistryDefinitions(URL amWebURI,URL agentOpsURI,URL agentStatusURI,ServiceRecord serviceRecord) throws IOException {
  super.applyInitialRegistryDefinitions(amWebURI,agentOpsURI,agentStatusURI,serviceRecord);
  try {
    URL restURL=new URL(agentOpsURI,SLIDER_PATH_AGENTS);
    URL agentStatusURL=new URL(agentStatusURI,SLIDER_PATH_AGENTS);
    serviceRecord.addInternalEndpoint(new Endpoint(CustomRegistryConstants.AGENT_SECURE_REST_API,ProtocolTypes.PROTOCOL_REST,restURL.toURI()));
    serviceRecord.addInternalEndpoint(new Endpoint(CustomRegistryConstants.AGENT_ONEWAY_REST_API,ProtocolTypes.PROTOCOL_REST,agentStatusURL.toURI()));
  }
 catch (  URISyntaxException e) {
    throw new IOException(e);
  }
  Component client=null;
  for (  Component component : getMetaInfo().getApplication().getComponents()) {
    if (component.getCategory().equals("String_Node_Str")) {
      client=component;
      break;
    }
  }
  if (client == null) {
    log.info("String_Node_Str");
    return;
  }
  ConfTreeOperations appConf=getAmState().getAppConfSnapshot();
  MapOperations clientOperations=appConf.getOrAddComponent(client.getName());
  appConf.resolve();
  if (!clientOperations.getOptionBool(AgentKeys.AM_CONFIG_GENERATION,false)) {
    log.info("String_Node_Str");
    return;
  }
  Map<String,Map<String,String>> configurations=new TreeMap<String,Map<String,String>>();
  Map<String,String> tokens=null;
  try {
    tokens=getStandardTokenMap(appConf,client.getName(),client.getName());
  }
 catch (  SliderException e) {
    throw new IOException(e);
  }
  for (  ConfigFile configFile : getMetaInfo().getComponentConfigFiles(client.getName())) {
    addNamedConfiguration(configFile.getDictionaryName(),appConf.getGlobalOptions().options,configurations,tokens,null,client.getName());
    if (appConf.getComponent(client.getName()) != null) {
      addNamedConfiguration(configFile.getDictionaryName(),appConf.getComponent(client.getName()).options,configurations,tokens,null,client.getName());
    }
  }
  dereferenceAllConfigs(configurations);
  for (  ConfigFile configFile : getMetaInfo().getComponentConfigFiles(client.getName())) {
    ConfigFormat configFormat=ConfigFormat.resolve(configFile.getType());
    Map<String,String> config=configurations.get(configFile.getDictionaryName());
    ConfigUtils.prepConfigForTemplateOutputter(configFormat,config,fileSystem,getClusterName(),new File(configFile.getFileName()).getName());
    PublishedConfiguration publishedConfiguration=new PublishedConfiguration(configFile.getDictionaryName(),config.entrySet());
    getAmState().getPublishedSliderConfigurations().put(configFile.getDictionaryName(),publishedConfiguration);
    log.info("String_Node_Str",configFile.getDictionaryName());
  }
}

Fixed version (ground truth):
@Override public void applyInitialRegistryDefinitions(URL amWebURI,URL agentOpsURI,URL agentStatusURI,ServiceRecord serviceRecord) throws IOException {
  super.applyInitialRegistryDefinitions(amWebURI,agentOpsURI,agentStatusURI,serviceRecord);
  try {
    URL restURL=new URL(agentOpsURI,SLIDER_PATH_AGENTS);
    URL agentStatusURL=new URL(agentStatusURI,SLIDER_PATH_AGENTS);
    serviceRecord.addInternalEndpoint(new Endpoint(CustomRegistryConstants.AGENT_SECURE_REST_API,ProtocolTypes.PROTOCOL_REST,restURL.toURI()));
    serviceRecord.addInternalEndpoint(new Endpoint(CustomRegistryConstants.AGENT_ONEWAY_REST_API,ProtocolTypes.PROTOCOL_REST,agentStatusURL.toURI()));
  }
 catch (  URISyntaxException e) {
    throw new IOException(e);
  }
  Component client=null;
  for (  Component component : getMetaInfo(null).getApplication().getComponents()) {
    if (component.getCategory().equals("String_Node_Str")) {
      client=component;
      break;
    }
  }
  if (client == null) {
    log.info("String_Node_Str");
    return;
  }
  ConfTreeOperations appConf=getAmState().getAppConfSnapshot();
  MapOperations clientOperations=appConf.getOrAddComponent(client.getName());
  appConf.resolve();
  if (!clientOperations.getOptionBool(AgentKeys.AM_CONFIG_GENERATION,false)) {
    log.info("String_Node_Str");
    return;
  }
  Map<String,Map<String,String>> configurations=new TreeMap<String,Map<String,String>>();
  Map<String,String> tokens=null;
  try {
    tokens=getStandardTokenMap(appConf,client.getName(),client.getName());
  }
 catch (  SliderException e) {
    throw new IOException(e);
  }
  for (  ConfigFile configFile : getMetaInfo(null).getComponentConfigFiles(client.getName())) {
    addNamedConfiguration(configFile.getDictionaryName(),appConf.getGlobalOptions().options,configurations,tokens,null,client.getName(),client.getName());
    if (appConf.getComponent(client.getName()) != null) {
      addNamedConfiguration(configFile.getDictionaryName(),appConf.getComponent(client.getName()).options,configurations,tokens,null,client.getName(),client.getName());
    }
  }
  dereferenceAllConfigs(configurations);
  for (  ConfigFile configFile : getMetaInfo(null).getComponentConfigFiles(client.getName())) {
    ConfigFormat configFormat=ConfigFormat.resolve(configFile.getType());
    Map<String,String> config=configurations.get(configFile.getDictionaryName());
    ConfigUtils.prepConfigForTemplateOutputter(configFormat,config,fileSystem,getClusterName(),new File(configFile.getFileName()).getName());
    PublishedConfiguration publishedConfiguration=new PublishedConfiguration(configFile.getDictionaryName(),config.entrySet());
    getAmState().getPublishedSliderConfigurations().put(configFile.getDictionaryName(),publishedConfiguration);
    log.info("String_Node_Str",configFile.getDictionaryName());
  }
}