Program: 165723
Project: 165723
Buggy source:
private void checkStateServer(){
  tickCounter++;
  ticks--;
  if (ticks < 0) {
    lastRfGained=rfGained;
    lastRfLost=rfLost;
    lastRfPerTick=(rfGained - rfLost) / 100;
    lastPearlsLost=pearlsLost;
    lastPearlsLaunched=pearlsLaunched;
    lastChargeCounter=chargeCounter;
    lastPearlArrivedAt=pearlArrivedAt;
    ticks=100;
    rfGained=0;
    rfLost=0;
    pearlsLaunched=0;
    pearlsLost=0;
    chargeCounter=0;
    pearlArrivedAt=-2;
  }
  handlePearls();
  handleSendingEnergy();
  if (chargingMode == CHARGE_HOLDING) {
    if (random.nextInt(1000) <= EndergenicConfiguration.chanceLost) {
      log("String_Node_Str");
      discardPearl("String_Node_Str");
    }
  }
  boolean pulse=(powerLevel > 0) && !prevIn;
  prevIn=powerLevel > 0;
  if (pulse) {
    if (chargingMode == CHARGE_IDLE) {
      log("String_Node_Str");
      startCharging();
      return;
    }
 else     if (chargingMode == CHARGE_HOLDING) {
      log("String_Node_Str");
      firePearl();
      return;
    }
  }
  if (chargingMode == CHARGE_IDLE) {
    return;
  }
  if (chargingMode == CHARGE_HOLDING) {
    int rf=EndergenicConfiguration.rfToHoldPearl;
    rf=(int)(rf * (3.0f - getInfusedFactor()) / 3.0f);
    int rfStored=getEnergyStored(EnumFacing.DOWN);
    if (rfStored < rf) {
      log("String_Node_Str" + rfStored + "String_Node_Str"+ rf+ "String_Node_Str");
      discardPearl("String_Node_Str");
    }
 else {
      int rfExtracted=storage.extractEnergy(rf,false);
      log("String_Node_Str" + rfExtracted + "String_Node_Str");
      rfLost+=rfExtracted;
    }
    return;
  }
  markDirty();
  chargingMode++;
  if (chargingMode >= 16) {
    log("String_Node_Str");
    chargingMode=CHARGE_IDLE;
  }
}

Fixed version (ground truth):
public void checkStateServer(){
  tickCounter++;
  ticks--;
  if (ticks < 0) {
    lastRfGained=rfGained;
    lastRfLost=rfLost;
    lastRfPerTick=(rfGained - rfLost) / 100;
    lastPearlsLost=pearlsLost;
    lastPearlsLaunched=pearlsLaunched;
    lastChargeCounter=chargeCounter;
    lastPearlArrivedAt=pearlArrivedAt;
    ticks=100;
    rfGained=0;
    rfLost=0;
    pearlsLaunched=0;
    pearlsLost=0;
    chargeCounter=0;
    pearlArrivedAt=-2;
  }
  handlePearls();
  handleSendingEnergy();
  if (chargingMode == CHARGE_HOLDING) {
    if (random.nextInt(1000) <= EndergenicConfiguration.chanceLost) {
      log("String_Node_Str");
      discardPearl("String_Node_Str");
    }
  }
  boolean pulse=(powerLevel > 0) && !prevIn;
  prevIn=powerLevel > 0;
  if (pulse) {
    if (chargingMode == CHARGE_IDLE) {
      log("String_Node_Str");
      startCharging();
      return;
    }
 else     if (chargingMode == CHARGE_HOLDING) {
      log("String_Node_Str");
      firePearl();
      return;
    }
  }
  if (chargingMode == CHARGE_IDLE) {
    return;
  }
  if (chargingMode == CHARGE_HOLDING) {
    int rf=EndergenicConfiguration.rfToHoldPearl;
    rf=(int)(rf * (3.0f - getInfusedFactor()) / 3.0f);
    int rfStored=getEnergyStored(EnumFacing.DOWN);
    if (rfStored < rf) {
      log("String_Node_Str" + rfStored + "String_Node_Str"+ rf+ "String_Node_Str");
      discardPearl("String_Node_Str");
    }
 else {
      int rfExtracted=storage.extractEnergy(rf,false);
      log("String_Node_Str" + rfExtracted + "String_Node_Str");
      rfLost+=rfExtracted;
    }
    return;
  }
  markDirty();
  chargingMode++;
  if (chargingMode >= 16) {
    log("String_Node_Str");
    chargingMode=CHARGE_IDLE;
  }
}