Program: 175082
Project: 175082
Buggy source:
@Override public boolean executeFromConsole(){
  try {
    SarImageReader sar=(SarImageReader)SumoPlatform.getApplication().getCurrentImageReader();
    ImageLayer layer=LayerManager.getIstanceManager().getCurrentImageLayer();
    if (layer != null && commandLine.length >= 3) {
      String arg0=commandLine[1];
      String arg1=commandLine[2];
      String arg2=commandLine[3];
      if (arg0.equalsIgnoreCase("String_Node_Str")) {
        if (commandLine.length == 2 && arg1.equalsIgnoreCase("String_Node_Str")) {
          runBBAnalysis();
        }
 else {
          int row=Integer.parseInt(arg1);
          int col=Integer.parseInt(arg2);
          yy=layer.getRealTileSizeY() * row;
          xx=layer.getRealTileSizeX() * col;
          tileSizeY=layer.getRealTileSizeY();
          tileSizeX=layer.getRealTileSizeY();
          String direction="String_Node_Str";
          if (commandLine.length == 5)           direction=commandLine[4];
          BlackBorderAnalysis borderAn=new BlackBorderAnalysis(sar,layer.getRealTileSizeX(),layer.getRealTileSizeY(),null);
          int[] threshs=borderAn.analyse(row,col,direction.equalsIgnoreCase("String_Node_Str"));
          List<Geometry> points=new ArrayList<>();
          GeometryFactory gf=new GeometryFactory();
          for (int i=0; i < threshs.length; i++) {
            int offset=threshs[i];
            if (direction.equalsIgnoreCase("String_Node_Str")) {
              if (xx < (sar.getWidth() / 2)) {
                Point p=gf.createPoint(new Coordinate(xx + offset,yy + i));
                points.add(p);
              }
            }
 else {
            }
          }
          GeometryImage giPoint=new GeometryImage(arg2,points);
          SimpleGeometryLayer offset=new SimpleGeometryLayer(layer,"String_Node_Str" + row + "String_Node_Str"+ col,giPoint);
          offset.setColor(Color.ORANGE);
          offset.setWidth(2.0f);
          LayerManager.addLayerInThread(offset);
          com.vividsolutions.jts.geom.Polygon box=JTSUtil.createPolygon(xx,yy,layer.getRealTileSizeX(),layer.getRealTileSizeY());
          List<Geometry> geoms=new ArrayList<>();
          geoms.add(box);
          GeometryImage gi=new GeometryImage(arg2,geoms);
          SimpleGeometryLayer sgl=new SimpleGeometryLayer(layer,"String_Node_Str" + row + "String_Node_Str"+ col,gi);
          sgl.setColor(Color.ORANGE);
          sgl.setWidth(2.0f);
          LayerManager.addLayerInThread(sgl);
        }
      }
 else       if (arg0.equalsIgnoreCase("String_Node_Str")) {
        int row=Integer.parseInt(arg1);
        int col=Integer.parseInt(arg2);
        Float hh=1.5f;
        Float hv=1.5f;
        Float vh=1.5f;
        Float vv=1.5f;
        Float buffer=0.0f;
        if (commandLine.length >= 5) {
          buffer=Float.parseFloat(commandLine[4]);
          if (commandLine.length > 5) {
            hh=Float.parseFloat(commandLine[5]);
            hv=Float.parseFloat(commandLine[6]);
            vh=Float.parseFloat(commandLine[7]);
            vv=Float.parseFloat(commandLine[8]);
          }
        }
        MaskVectorLayer coastlineMask=null;
        MaskVectorLayer iceMasks=null;
        for (        ILayer l : LayerManager.getIstanceManager().getChilds(layer)) {
          if (l instanceof IMask) {
            if (((MaskVectorLayer)l).getMaskType() == MaskVectorLayer.COASTLINE_MASK) {
              coastlineMask=(MaskVectorLayer)l;
            }
 else             if (((MaskVectorLayer)l).getMaskType() == MaskVectorLayer.ICE_MASK) {
              iceMasks=(MaskVectorLayer)l;
            }
          }
        }
        MaskGeometries mg=null;
        IMask bufferedMask=null;
        if (coastlineMask != null) {
          bufferedMask=FactoryLayer.createMaskLayer(coastlineMask.getName(),coastlineMask.getType(),0,((MaskVectorLayer)coastlineMask).getGeometriclayer(),coastlineMask.getMaskType());
          mg=new MaskGeometries("String_Node_Str",bufferedMask.getGeometries(),bufferedMask.getName());
        }
        MaskGeometries ice=null;
        IMask iceMask=null;
        if (iceMasks != null) {
          iceMask=FactoryLayer.createMaskLayer(iceMasks.getName(),iceMasks.getType(),0,((MaskVectorLayer)iceMasks).getGeometriclayer(),iceMasks.getMaskType());
          ice=new MaskGeometries("String_Node_Str",iceMask.getGeometries(),bufferedMask.getName());
        }
        VDSAnalysis analysis=new VDSAnalysis(sar,mg,ice,Float.parseFloat(sar.getENL()),new Float[]{hh,hv,vh,vv},layer.getRealTileSizeX(),layer.getRealTileSizeY(),layer.getHorizontalTilesImage(),layer.getVerticalTilesImage());
        analysis.setAnalyseSingleTile(true);
        analysis.setxTileToAnalyze(col);
        analysis.setyTileToAnalyze(row);
        proc=new AnalysisProcess(sar,Float.parseFloat(sar.getENL()),analysis,0,0,null);
        proc.addProcessListener(this);
        proc.call();
        yy=layer.getRealTileSizeY() * row;
        xx=layer.getRealTileSizeX() * col;
        tileSizeY=layer.getRealTileSizeY();
        tileSizeX=layer.getRealTileSizeX();
      }
    }
  }
 catch (  Exception e) {
    logger.error(e.getMessage());
    return false;
  }
 finally {
  }
  return true;
}

Fixed version (ground truth):
@Override public boolean executeFromConsole(){
  try {
    SarImageReader sar=(SarImageReader)SumoPlatform.getApplication().getCurrentImageReader();
    ImageLayer layer=LayerManager.getIstanceManager().getCurrentImageLayer();
    if (layer != null && commandLine.length >= 3) {
      String arg0=commandLine[1];
      String arg1=commandLine[2];
      String arg2=commandLine[3];
      if (arg0.equalsIgnoreCase("String_Node_Str")) {
        if (commandLine.length == 2 && arg1.equalsIgnoreCase("String_Node_Str")) {
          runBBAnalysis();
        }
 else {
          int row=Integer.parseInt(arg1);
          int col=Integer.parseInt(arg2);
          yy=layer.getRealTileSizeY() * row;
          xx=layer.getRealTileSizeX() * col;
          tileSizeY=layer.getRealTileSizeY();
          tileSizeX=layer.getRealTileSizeY();
          String direction="String_Node_Str";
          if (commandLine.length == 5)           direction=commandLine[4];
          BlackBorderAnalysis borderAn=new BlackBorderAnalysis(sar,layer.getRealTileSizeX(),layer.getRealTileSizeY(),null);
          int[] threshs=borderAn.analyse(row,col,direction.equalsIgnoreCase("String_Node_Str"));
          List<Geometry> points=new ArrayList<>();
          GeometryFactory gf=new GeometryFactory();
          for (int i=0; i < threshs.length; i++) {
            int offset=threshs[i];
            if (direction.equalsIgnoreCase("String_Node_Str")) {
              if (xx < (sar.getWidth() / 2)) {
                Point p=gf.createPoint(new Coordinate(xx + offset,yy + i));
                points.add(p);
              }
            }
 else {
            }
          }
          GeometryImage giPoint=new GeometryImage(arg2,points);
          SimpleGeometryLayer offset=new SimpleGeometryLayer(layer,"String_Node_Str" + row + "String_Node_Str"+ col,giPoint);
          offset.setColor(Color.ORANGE);
          offset.setWidth(2.0f);
          LayerManager.addLayerInThread(offset);
          com.vividsolutions.jts.geom.Polygon box=JTSUtil.createPolygon(xx,yy,layer.getRealTileSizeX(),layer.getRealTileSizeY());
          List<Geometry> geoms=new ArrayList<>();
          geoms.add(box);
          GeometryImage gi=new GeometryImage(arg2,geoms);
          SimpleGeometryLayer sgl=new SimpleGeometryLayer(layer,"String_Node_Str" + row + "String_Node_Str"+ col,gi);
          sgl.setColor(Color.ORANGE);
          sgl.setWidth(2.0f);
          LayerManager.addLayerInThread(sgl);
        }
      }
 else       if (arg0.equalsIgnoreCase("String_Node_Str")) {
        int row=Integer.parseInt(arg1);
        int col=Integer.parseInt(arg2);
        Float hh=1.5f;
        Float hv=1.5f;
        Float vh=1.5f;
        Float vv=1.5f;
        Float buffer=0.0f;
        if (commandLine.length >= 5) {
          buffer=Float.parseFloat(commandLine[4]);
          if (commandLine.length > 5) {
            hh=Float.parseFloat(commandLine[5]);
            hv=Float.parseFloat(commandLine[6]);
            vh=Float.parseFloat(commandLine[7]);
            vv=Float.parseFloat(commandLine[8]);
          }
        }
        MaskVectorLayer coastlineMask=null;
        MaskVectorLayer iceMasks=null;
        for (        ILayer l : LayerManager.getIstanceManager().getChilds(layer)) {
          if (l instanceof IMask) {
            if (((MaskVectorLayer)l).getMaskType() == MaskVectorLayer.COASTLINE_MASK) {
              coastlineMask=(MaskVectorLayer)l;
            }
 else             if (((MaskVectorLayer)l).getMaskType() == MaskVectorLayer.ICE_MASK) {
              iceMasks=(MaskVectorLayer)l;
            }
          }
        }
        MaskGeometries mg=null;
        IMask bufferedMask=null;
        if (coastlineMask != null) {
          bufferedMask=FactoryLayer.createMaskLayer(coastlineMask.getName(),coastlineMask.getType(),0,((MaskVectorLayer)coastlineMask).getGeometriclayer(),coastlineMask.getMaskType());
          mg=new MaskGeometries("String_Node_Str",bufferedMask.getGeometries(),bufferedMask.getName());
        }
        MaskGeometries ice=null;
        IMask iceMask=null;
        if (iceMasks != null) {
          iceMask=FactoryLayer.createMaskLayer(iceMasks.getName(),iceMasks.getType(),0,((MaskVectorLayer)iceMasks).getGeometriclayer(),iceMasks.getMaskType());
          ice=new MaskGeometries("String_Node_Str",iceMask.getGeometries(),bufferedMask.getName());
        }
        yy=layer.getRealTileSizeY() * row;
        xx=layer.getRealTileSizeX() * col;
        tileSizeY=layer.getRealTileSizeY();
        tileSizeX=layer.getRealTileSizeX();
        VDSAnalysis analysis=new VDSAnalysis(sar,mg,ice,Float.parseFloat(sar.getENL()),new Float[]{hh,hv,vh,vv},layer.getRealTileSizeX(),layer.getRealTileSizeY(),layer.getHorizontalTilesImage(),layer.getVerticalTilesImage());
        analysis.setAnalyseSingleTile(true);
        analysis.setxTileToAnalyze(col);
        analysis.setyTileToAnalyze(row);
        proc=new AnalysisProcess(sar,Float.parseFloat(sar.getENL()),analysis,0,0,null);
        proc.addProcessListener(this);
        proc.call();
      }
    }
  }
 catch (  Exception e) {
    logger.error(e.getMessage());
    return false;
  }
 finally {
  }
  return true;
}