Program: 38117
Project: 38117
Buggy source:
@Override public Response execute(){
  DatabaseAccessor db=null;
  ProcessHandler processHandler;
  try {
    db=initDB();
    processHandler=new ProcessHandler();
switch (processtype) {
case PutProcessCommand.CMD_RAW_TO_PROFILE:
      Genome g=db.getGenomeRelease(genomeVersion);
    if (g == null) {
      return new ErrorResponse(HttpStatusCode.BAD_REQUEST,"String_Node_Str" + genomeVersion);
    }
 else {
      String genomeFolderPath=g.folderPath;
      String genomeFilePrefix=g.getFilePrefix();
      if (genomeFilePrefix == null) {
        return processError(db,"String_Node_Str" + genomeFilePrefix,"String_Node_Str" + "String_Node_Str");
      }
      if (genomeFolderPath == null) {
        return processError(db,"String_Node_Str" + genomeFolderPath,"String_Node_Str" + "String_Node_Str");
      }
      parameters[1]=genomeFolderPath + genomeFilePrefix;
    }
  try {
    processHandler.executeProcess(PutProcessCommand.CMD_RAW_TO_PROFILE,parameters,filepaths.getKey(),filepaths.getValue());
  }
 catch (  ProcessException e) {
    return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
  }
break;
case PutProcessCommand.CMD_CANCEL_PROCESS:
try {
processHandler.executeProcess(CMD_CANCEL_PROCESS,parameters,null,null);
return new MinimalResponse(HttpStatusCode.OK);
}
 catch (ProcessException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
default :
return processError(db,"String_Node_Str","String_Node_Str" + "String_Node_Str");
}
}
 catch (SQLException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
catch (IOException e1) {
return processError(db,e1.getMessage(),"String_Node_Str" + "String_Node_Str");
}
try {
if (!db.isConnected()) {
db=initDB();
}
db.addGeneratedProfiles(expid,filepaths.getValue(),filepaths.getKey(),metadata,genomeVersion,username,false);
}
 catch (SQLException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
catch (IOException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
db.close();
Debug.log(username + "String_Node_Str" + "String_Node_Str"+ processtype+ "String_Node_Str"+ expid+ "String_Node_Str"+ "String_Node_Str"+ metadata+ "String_Node_Str"+ "String_Node_Str"+ parameters+ "String_Node_Str"+ "String_Node_Str"+ genomeVersion+ "String_Node_Str"+ "String_Node_Str"+ PID+ "String_Node_Str");
return new ProcessResponse(HttpStatusCode.OK,"String_Node_Str" + "String_Node_Str" + processtype + "String_Node_Str"+ expid+ "String_Node_Str"+ "String_Node_Str"+ metadata+ "String_Node_Str"+ "String_Node_Str"+ parameters+ "String_Node_Str"+ "String_Node_Str"+ genomeVersion+ "String_Node_Str"+ "String_Node_Str"+ PID+ "String_Node_Str");
}

Fixed version (ground truth):
@Override public Response execute(){
  DatabaseAccessor db=null;
  ProcessHandler processHandler;
  try {
    db=initDB();
    processHandler=new ProcessHandler();
switch (processtype) {
case PutProcessCommand.CMD_RAW_TO_PROFILE:
      Genome g=db.getGenomeRelease(genomeVersion);
    if (g == null) {
      return new ErrorResponse(HttpStatusCode.BAD_REQUEST,"String_Node_Str" + genomeVersion);
    }
 else {
      String genomeFolderPath=g.folderPath;
      String genomeFilePrefix=g.getFilePrefix();
      if (genomeFilePrefix == null) {
        return processError(db,"String_Node_Str" + genomeFilePrefix,"String_Node_Str" + "String_Node_Str");
      }
      if (genomeFolderPath == null) {
        return processError(db,"String_Node_Str" + genomeFolderPath,"String_Node_Str" + "String_Node_Str");
      }
      parameters[1]=genomeFolderPath + genomeFilePrefix;
    }
  try {
    processHandler.executeProcess(PutProcessCommand.CMD_RAW_TO_PROFILE,parameters,filepaths.getKey(),filepaths.getValue());
  }
 catch (  ProcessException e) {
    return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
  }
break;
case PutProcessCommand.CMD_CANCEL_PROCESS:
try {
processHandler.executeProcess(CMD_CANCEL_PROCESS,parameters,null,null);
return new MinimalResponse(HttpStatusCode.OK);
}
 catch (ProcessException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
default :
return processError(db,"String_Node_Str","String_Node_Str" + "String_Node_Str");
}
}
 catch (SQLException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
catch (IOException e1) {
return processError(db,e1.getMessage(),"String_Node_Str" + "String_Node_Str");
}
try {
if (!db.isConnected()) {
db=initDB();
}
db.addGeneratedProfiles(expid,filepaths.getValue(),filepaths.getKey(),metadata,genomeVersion,username,false);
}
 catch (SQLException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
catch (IOException e) {
return processError(db,e.getMessage(),"String_Node_Str" + "String_Node_Str");
}
db.close();
Debug.log(username + "String_Node_Str" + "String_Node_Str"+ processtype+ "String_Node_Str"+ expid+ "String_Node_Str"+ "String_Node_Str"+ metadata+ "String_Node_Str"+ "String_Node_Str"+ arrayToString(parameters,parameters.length)+ "String_Node_Str"+ "String_Node_Str"+ genomeVersion+ "String_Node_Str"+ "String_Node_Str"+ PID+ "String_Node_Str");
return new ProcessResponse(HttpStatusCode.OK,"String_Node_Str" + "String_Node_Str" + processtype + "String_Node_Str"+ expid+ "String_Node_Str"+ "String_Node_Str"+ metadata+ "String_Node_Str"+ "String_Node_Str"+ arrayToString(parameters,parameters.length)+ "String_Node_Str"+ "String_Node_Str"+ genomeVersion+ "String_Node_Str"+ "String_Node_Str"+ PID+ "String_Node_Str");
}