Program: 152575
Project: 152575
Buggy source:
public void Run(String name,int width,int height,File file){
  if (!file.exists() || !file.isDirectory()) {
    System.out.println("String_Node_Str" + file.getPath() + "String_Node_Str");
    return;
  }
  List<File> imageFiles=new ArrayList<File>();
  GetImageFiles(file,imageFiles);
  Map<BufferedImage,String> imageMap=new TreeMap<BufferedImage,String>(new BufferedImageComparator());
  for (  File f : imageFiles) {
    try {
      BufferedImage image=ImageIO.read(f);
      if (image.getWidth() > width || image.getHeight() > height) {
        System.out.println("String_Node_Str" + f.getPath() + "String_Node_Str"+ image.getWidth()+ "String_Node_Str"+ image.getHeight()+ "String_Node_Str"+ width+ "String_Node_Str"+ height+ "String_Node_Str");
        return;
      }
      String path=f.getPath().substring(0,f.getPath().lastIndexOf("String_Node_Str")).replace("String_Node_Str","String_Node_Str");
      imageMap.put(image,path);
    }
 catch (    IOException e) {
      System.out.println("String_Node_Str" + f.getAbsoluteFile() + "String_Node_Str");
    }
  }
  List<Texture> textures=new ArrayList<Texture>();
  textures.add(new Texture(width,height));
  for (  Map.Entry<BufferedImage,String> e : imageMap.entrySet()) {
    boolean added=false;
    for (    Texture texture : textures) {
      if (texture.AddImage(e.getKey(),e.getValue())) {
        added=true;
        break;
      }
    }
    if (!added) {
      Texture texture=new Texture(width,height);
      texture.AddImage(e.getKey(),e.getValue());
      textures.add(texture);
    }
  }
  int count=0;
  for (  Texture texture : textures) {
    texture.Write(name + (++count));
  }
}

Fixed version (ground truth):
public void Run(String name,int width,int height,File file){
  if (!file.exists() || !file.isDirectory()) {
    System.out.println("String_Node_Str" + file.getPath() + "String_Node_Str");
    return;
  }
  List<File> imageFiles=new ArrayList<File>();
  GetImageFiles(file,imageFiles);
  System.out.println("String_Node_Str" + imageFiles.size() + "String_Node_Str");
  Set<ImageName> imageNameSet=new TreeSet<ImageName>(new ImageNameComparator());
  for (  File f : imageFiles) {
    try {
      BufferedImage image=ImageIO.read(f);
      if (image.getWidth() > width || image.getHeight() > height) {
        System.out.println("String_Node_Str" + f.getPath() + "String_Node_Str"+ image.getWidth()+ "String_Node_Str"+ image.getHeight()+ "String_Node_Str"+ width+ "String_Node_Str"+ height+ "String_Node_Str");
        return;
      }
      String path=f.getPath().substring(0,f.getPath().lastIndexOf("String_Node_Str")).replace("String_Node_Str","String_Node_Str");
      imageNameSet.add(new ImageName(image,path));
    }
 catch (    IOException e) {
      System.out.println("String_Node_Str" + f.getAbsoluteFile() + "String_Node_Str");
    }
  }
  List<Texture> textures=new ArrayList<Texture>();
  textures.add(new Texture(width,height));
  int count=0;
  for (  ImageName imageName : imageNameSet) {
    boolean added=false;
    System.out.println("String_Node_Str" + imageName.name + "String_Node_Str"+ (++count)+ "String_Node_Str");
    for (    Texture texture : textures) {
      if (texture.AddImage(imageName.image,imageName.name)) {
        added=true;
        break;
      }
    }
    if (!added) {
      Texture texture=new Texture(width,height);
      texture.AddImage(imageName.image,imageName.name);
      textures.add(texture);
    }
  }
  count=0;
  for (  Texture texture : textures) {
    System.out.println("String_Node_Str" + name + (++count));
    texture.Write(name + count);
  }
}