Program: 97524
Project: 97524
Buggy source:
public synchronized void installLatestBundles(SubMonitor subMonitor){
  final SubMonitor master=SubMonitor.convert(subMonitor,100);
  final List<BundleInfoLite> bundles=managedArea.getLatestBundles();
  Collection<Bundle> bundlesToRefresh=new ArrayList<Bundle>();
  for (  BundleInfoLite info : bundles) {
    if (!info.isInstalled()) {
      try {
        List<BundleInfoLite> uninstallList=managedArea.getByBundleName(info.getSymbolicName());
        if (uninstallList.size() > 1) {
          for (          BundleInfoLite toUninstall : uninstallList) {
            if (toUninstall.isInstalled()) {
              Bundle bundle=toUninstall.uninstall();
              bundlesToRefresh.add(bundle);
            }
          }
        }
      }
 catch (      BundleException e) {
        OseeLog.log(WorkspaceBundleLoadCoordinator.class,Level.WARNING,e);
      }
    }
  }
  if (wiring != null && bundlesToRefresh.size() > 0) {
    wiring.refreshBundles(bundlesToRefresh,new FrameworkListener(){
      @Override public void frameworkEvent(      FrameworkEvent event){
        if (FrameworkEvent.PACKAGES_REFRESHED == event.getType()) {
          startBundles(bundles,master.newChild(80));
          waitForViewsToBeRegistered(master.newChild(15));
          PlatformUI.getWorkbench().getDisplay().asyncExec(new Runnable(){
            @Override public void run(){
              restoreStateFromMemento(master.newChild(5));
            }
          }
);
        }
      }
    }
);
  }
 else {
    startBundles(bundles,master.newChild(80));
    waitForViewsToBeRegistered(master.newChild(15));
    final SubMonitor restore=master.newChild(5);
    PlatformUI.getWorkbench().getDisplay().asyncExec(new Runnable(){
      @Override public void run(){
        restoreStateFromMemento(restore);
      }
    }
);
  }
}

Fixed version (ground truth):
public synchronized void installLatestBundles(SubMonitor subMonitor){
  final SubMonitor master=SubMonitor.convert(subMonitor,100);
  final List<BundleInfoLite> bundles=managedArea.getLatestBundles();
  Collection<Bundle> bundlesToRefresh=new ArrayList<Bundle>();
  for (  BundleInfoLite info : bundles) {
    if (!info.isInstalled()) {
      try {
        List<BundleInfoLite> uninstallList=managedArea.getByBundleName(info.getSymbolicName());
        if (uninstallList.size() > 1) {
          for (          BundleInfoLite toUninstall : uninstallList) {
            if (toUninstall.isInstalled()) {
              closeUpdatedViews(uninstallList);
              Bundle bundle=toUninstall.uninstall();
              bundlesToRefresh.add(bundle);
            }
          }
        }
      }
 catch (      BundleException e) {
        OseeLog.log(WorkspaceBundleLoadCoordinator.class,Level.WARNING,e);
      }
    }
  }
  if (wiring != null && bundlesToRefresh.size() > 0) {
    final Object waitForLoad=new Object();
    wiring.refreshBundles(bundlesToRefresh,new FrameworkListener(){
      @Override public void frameworkEvent(      FrameworkEvent event){
        if (FrameworkEvent.PACKAGES_REFRESHED == event.getType()) {
          startBundles(bundles,master.newChild(80));
          waitForViewsToBeRegistered(master.newChild(15));
          PlatformUI.getWorkbench().getDisplay().asyncExec(new Runnable(){
            @Override public void run(){
              restoreStateFromMemento(master.newChild(5));
            }
          }
);
synchronized (waitForLoad) {
            waitForLoad.notifyAll();
          }
        }
      }
    }
);
synchronized (waitForLoad) {
      try {
        waitForLoad.wait(20000);
      }
 catch (      InterruptedException e) {
      }
    }
  }
 else {
    startBundles(bundles,master.newChild(80));
    waitForViewsToBeRegistered(master.newChild(15));
    final SubMonitor restore=master.newChild(5);
    PlatformUI.getWorkbench().getDisplay().asyncExec(new Runnable(){
      @Override public void run(){
        restoreStateFromMemento(restore);
      }
    }
);
  }
}