Program: 98802
Project: 98802
Buggy source:
/** 
 * Bootstrapping javadoc application to save users having to remember all the arguments.
 * @param args the path to locate the source code and the path to the compiled classes
 * @throws IOException          if there are problems traversing the source code hierarchy
 * @throws InterruptedException if the spawned javadoc process is interrupted
 */
public static void main(String[] args) throws IOException, InterruptedException {
  String sourcePath=args[0];
  String classPath=args[1];
  List<String> command=Lists.newArrayList("String_Node_Str","String_Node_Str",System.getProperty("String_Node_Str") + "String_Node_Str" + classPath,"String_Node_Str",System.getProperty("String_Node_Str"),"String_Node_Str","String_Node_Str",DomainObjectDocletCleaner.class.getCanonicalName());
  if (args.length > 2) {
    Collections.addAll(command,Arrays.copyOfRange(args,2,args.length));
  }
  command.addAll(listFileNames(new File(sourcePath)));
  Process process=Runtime.getRuntime().exec(command.toArray(new String[command.size()]));
  BufferedReader processOutput=new BufferedReader(new InputStreamReader(process.getInputStream()));
  BufferedReader processError=new BufferedReader(new InputStreamReader(process.getErrorStream()));
  String line;
  while ((line=processOutput.readLine()) != null) {
    System.out.println("String_Node_Str" + line);
  }
  while ((line=processError.readLine()) != null) {
    System.out.println("String_Node_Str" + line);
  }
  process.destroy();
  if (process.exitValue() == 0) {
    System.out.println("String_Node_Str");
  }
 else {
    System.out.println("String_Node_Str");
    System.out.println("String_Node_Str" + Joiner.on("String_Node_Str").join(args));
  }
}

Fixed version (ground truth):
/** 
 * Bootstrapping javadoc application to save users having to remember all the arguments.
 * @param args the path to locate the source code and the path to the compiled classes
 * @throws IOException          if there are problems traversing the source code hierarchy
 * @throws InterruptedException if the spawned javadoc process is interrupted
 */
public static void main(String[] args) throws IOException, InterruptedException {
  String sourcePath=args[0];
  String classPath=args[1];
  List<String> command=Lists.newArrayList("String_Node_Str","String_Node_Str",System.getProperty("String_Node_Str") + "String_Node_Str" + classPath,"String_Node_Str",System.getProperty("String_Node_Str"),"String_Node_Str","String_Node_Str",DomainObjectDocletCleaner.class.getCanonicalName());
  if (args.length > 2) {
    Collections.addAll(command,Arrays.copyOfRange(args,2,args.length));
  }
  command.addAll(listFileNames(new File(sourcePath)));
  System.out.println("String_Node_Str" + Joiner.on("String_Node_Str").join(command) + "String_Node_Str");
  Process process=Runtime.getRuntime().exec(command.toArray(new String[command.size()]));
  BufferedReader processOutput=new BufferedReader(new InputStreamReader(process.getInputStream()));
  BufferedReader processError=new BufferedReader(new InputStreamReader(process.getErrorStream()));
  String stdout="String_Node_Str", stderr=null;
  while (stdout != null || stderr != null) {
    stdout=processOutput.readLine();
    stderr=processError.readLine();
    if (stdout != null)     System.out.println("String_Node_Str" + stdout);
    if (stderr != null)     System.out.println("String_Node_Str" + stderr);
  }
  process.destroy();
  if (process.exitValue() == 0) {
    System.out.println("String_Node_Str");
  }
 else {
    System.out.println("String_Node_Str");
    System.out.println("String_Node_Str" + Joiner.on("String_Node_Str").join(args));
  }
}