Program: 5527
Project: 5527
Buggy source:
public int setup(MSP430Core cpu,ArrayList<IOUnit> ioUnits){
  Multiplier mp=new Multiplier(cpu,cpu.memory,0);
  for (int i=0x130, n=0x13f; i < n; i++) {
    cpu.memOut[i]=mp;
    cpu.memIn[i]=mp;
  }
  USCI usciA0=new USCI(cpu,0,cpu.memory,this);
  USCI usciB0=new USCI(cpu,1,cpu.memory,this);
  USCI usciA1=new USCI(cpu,2,cpu.memory,this);
  USCI usciB1=new USCI(cpu,3,cpu.memory,this);
  for (int i=0, n=8; i < n; i++) {
    cpu.memOut[0x60 + i]=usciA0;
    cpu.memIn[0x60 + i]=usciA0;
    cpu.memOut[0x68 + i]=usciB0;
    cpu.memIn[0x68 + i]=usciB0;
    cpu.memOut[0xd0 + i]=usciA1;
    cpu.memIn[0xd0 + i]=usciA1;
    cpu.memOut[0xd8 + i]=usciB1;
    cpu.memIn[0xd8 + i]=usciB1;
  }
  cpu.setIO(0x118,usciB0,true);
  cpu.setIO(0x11a,usciB0,true);
  cpu.setIO(0x17c,usciB1,true);
  cpu.setIO(0x17e,usciB1,true);
  ioUnits.add(usciA0);
  ioUnits.add(usciB0);
  ioUnits.add(usciA1);
  ioUnits.add(usciB1);
  cpu.memOut[6]=usciA1;
  cpu.memIn[6]=usciA1;
  cpu.memOut[7]=usciA1;
  cpu.memIn[7]=usciA1;
  ioUnits.add(new IOPort(cpu,1,4,cpu.memory,0x20));
  ioUnits.add(new IOPort(cpu,2,1,cpu.memory,0x28));
  for (int i=0, n=8; i < n; i++) {
    cpu.memOut[0x20 + i]=ioUnits.get(0);
    cpu.memOut[0x28 + i]=ioUnits.get(1);
    cpu.memIn[0x20 + i]=ioUnits.get(0);
    cpu.memIn[0x28 + i]=ioUnits.get(1);
  }
  for (int i=0, n=2; i < n; i++) {
    IOPort p=new IOPort(cpu,(3 + i),0,cpu.memory,0x18 + i * 4);
    ioUnits.add(p);
    cpu.memOut[0x18 + i * 4]=p;
    cpu.memOut[0x19 + i * 4]=p;
    cpu.memOut[0x1a + i * 4]=p;
    cpu.memOut[0x1b + i * 4]=p;
    cpu.memIn[0x18 + i * 4]=p;
    cpu.memIn[0x19 + i * 4]=p;
    cpu.memIn[0x1a + i * 4]=p;
    cpu.memIn[0x1b + i * 4]=p;
  }
  for (int i=0, n=2; i < n; i++) {
    IOPort p=new IOPort(cpu,(5 + i),0,cpu.memory,0x30 + i * 4);
    ioUnits.add(p);
    cpu.memOut[0x30 + i * 4]=p;
    cpu.memOut[0x31 + i * 4]=p;
    cpu.memOut[0x32 + i * 4]=p;
    cpu.memOut[0x33 + i * 4]=p;
    cpu.memIn[0x30 + i * 4]=p;
    cpu.memIn[0x31 + i * 4]=p;
    cpu.memIn[0x32 + i * 4]=p;
    cpu.memIn[0x33 + i * 4]=p;
  }
  return 4 + 6;
}

Fixed version (ground truth):
public int setup(MSP430Core cpu,ArrayList<IOUnit> ioUnits){
  Multiplier mp=new Multiplier(cpu,cpu.memory,0);
  for (int i=0x130, n=0x13f; i < n; i++) {
    cpu.memOut[i]=mp;
    cpu.memIn[i]=mp;
  }
  USCI usciA0=new USCI(cpu,0,cpu.memory,this);
  USCI usciB0=new USCI(cpu,1,cpu.memory,this);
  USCI usciA1=new USCI(cpu,2,cpu.memory,this);
  USCI usciB1=new USCI(cpu,3,cpu.memory,this);
  for (int i=0, n=8; i < n; i++) {
    cpu.memOut[0x60 + i]=usciA0;
    cpu.memIn[0x60 + i]=usciA0;
    cpu.memOut[0x68 + i]=usciB0;
    cpu.memIn[0x68 + i]=usciB0;
    cpu.memOut[0xd0 + i]=usciA1;
    cpu.memIn[0xd0 + i]=usciA1;
    cpu.memOut[0xd8 + i]=usciB1;
    cpu.memIn[0xd8 + i]=usciB1;
  }
  cpu.setIO(0x118,usciB0,true);
  cpu.setIO(0x11a,usciB0,true);
  cpu.setIO(0x17c,usciB1,true);
  cpu.setIO(0x17e,usciB1,true);
  ioUnits.add(usciA0);
  ioUnits.add(usciB0);
  ioUnits.add(usciA1);
  ioUnits.add(usciB1);
  cpu.memOut[6]=usciA1;
  cpu.memIn[6]=usciA1;
  cpu.memOut[7]=usciA1;
  cpu.memIn[7]=usciA1;
  IOPort io1;
  IOPort io2;
  ioUnits.add(io1=new IOPort(cpu,1,4,cpu.memory,0x20));
  ioUnits.add(io2=new IOPort(cpu,2,1,cpu.memory,0x28));
  for (int i=0, n=8; i < n; i++) {
    cpu.memOut[0x20 + i]=io1;
    cpu.memOut[0x28 + i]=io2;
    cpu.memIn[0x20 + i]=io1;
    cpu.memIn[0x28 + i]=io2;
  }
  for (int i=0, n=2; i < n; i++) {
    IOPort p=new IOPort(cpu,(3 + i),0,cpu.memory,0x18 + i * 4);
    ioUnits.add(p);
    cpu.memOut[0x18 + i * 4]=p;
    cpu.memOut[0x19 + i * 4]=p;
    cpu.memOut[0x1a + i * 4]=p;
    cpu.memOut[0x1b + i * 4]=p;
    cpu.memIn[0x18 + i * 4]=p;
    cpu.memIn[0x19 + i * 4]=p;
    cpu.memIn[0x1a + i * 4]=p;
    cpu.memIn[0x1b + i * 4]=p;
  }
  for (int i=0, n=2; i < n; i++) {
    IOPort p=new IOPort(cpu,(5 + i),0,cpu.memory,0x30 + i * 4);
    ioUnits.add(p);
    cpu.memOut[0x30 + i * 4]=p;
    cpu.memOut[0x31 + i * 4]=p;
    cpu.memOut[0x32 + i * 4]=p;
    cpu.memOut[0x33 + i * 4]=p;
    cpu.memIn[0x30 + i * 4]=p;
    cpu.memIn[0x31 + i * 4]=p;
    cpu.memIn[0x32 + i * 4]=p;
    cpu.memIn[0x33 + i * 4]=p;
  }
  return 4 + 6;
}