Program: 7074
Project: 7074
Buggy source:
public static void main(String[] args){
  try {
    Flags flags=new FlagsParser().parseArgument(args);
    File config=new File(flags.getConfig());
    Set<FileInfo> fileSet=new LinkedHashSet<FileInfo>();
    List<Module> modules=new LinkedList<Module>();
    String serverAddress=flags.getServer();
    if (flags.hasWork()) {
      if (!config.exists()) {
        throw new RuntimeException("String_Node_Str" + flags.getConfig());
      }
      Reader configReader=new java.io.FileReader(flags.getConfig());
      ConfigurationParser configParser=new ConfigurationParser(config.getParentFile(),configReader);
      PluginLoader pluginLoader=new PluginLoader();
      configParser.parse();
      fileSet=configParser.getFilesList();
      if (serverAddress == null || serverAddress.length() == 0) {
        serverAddress=configParser.getServer();
      }
      modules.addAll(pluginLoader.load(configParser.getPlugins()));
    }
    if (serverAddress == null || serverAddress.length() == 0) {
      if (flags.getPort() == -1) {
        throw new RuntimeException("String_Node_Str");
      }
      serverAddress=String.format("String_Node_Str","String_Node_Str",flags.getPort());
    }
    if (flags.getTestOutput().length() > 0) {
      modules.add(new XmlClientModule(System.out));
    }
 else {
      modules.add(new PrintStreamClientModule(System.out));
    }
    Injector injector=Guice.createInjector(new JsTestDriverModule(flags,fileSet,modules,serverAddress));
    injector.getInstance(ActionRunner.class).runActions();
  }
 catch (  CmdLineException e) {
    System.err.println(e.getMessage());
  }
catch (  Exception e) {
    System.err.println(e);
    System.exit(1);
  }
}

Fixed version (ground truth):
public static void main(String[] args){
  try {
    Flags flags=new FlagsParser().parseArgument(args);
    File config=new File(flags.getConfig());
    Set<FileInfo> fileSet=new LinkedHashSet<FileInfo>();
    List<Module> modules=new LinkedList<Module>();
    String serverAddress=flags.getServer();
    if (flags.hasWork()) {
      if (!config.exists()) {
        throw new RuntimeException("String_Node_Str" + flags.getConfig());
      }
      Reader configReader=new java.io.FileReader(config);
      ConfigurationParser configParser=new ConfigurationParser(config.getParentFile(),configReader);
      PluginLoader pluginLoader=new PluginLoader();
      configParser.parse();
      fileSet=configParser.getFilesList();
      if (serverAddress == null || serverAddress.length() == 0) {
        serverAddress=configParser.getServer();
      }
      modules.addAll(pluginLoader.load(configParser.getPlugins()));
    }
    if (serverAddress == null || serverAddress.length() == 0) {
      if (flags.getPort() == -1) {
        throw new RuntimeException("String_Node_Str");
      }
      serverAddress=String.format("String_Node_Str","String_Node_Str",flags.getPort());
    }
    if (flags.getTestOutput().length() > 0) {
      modules.add(new XmlClientModule(System.out));
    }
 else {
      modules.add(new PrintStreamClientModule(System.out));
    }
    Injector injector=Guice.createInjector(new JsTestDriverModule(flags,fileSet,modules,serverAddress));
    injector.getInstance(ActionRunner.class).runActions();
  }
 catch (  CmdLineException e) {
    System.err.println(e.getMessage());
  }
catch (  Exception e) {
    System.err.println(e);
    System.exit(1);
  }
}