Program: 137308
Project: 137308
Buggy source:
@Override protected void saveAnalysis() throws DataprofilerCoreException {
  for (  Domain domain : this.analysisItem.getAnalysis().getParameters().getDataFilter()) {
    domain.setName(this.analysisItem.getAnalysis().getName());
  }
  IRepositoryViewObject reposObject=null;
  getAnalysisHandler().clearAnalysis();
  List<RepositoryNode> columnListAANode=anaColumnCompareViewer.getColumnListA();
  List<RepositoryNode> columnListBBNode=anaColumnCompareViewer.getColumnListB();
  AnalysisBuilder anaBuilder=new AnalysisBuilder();
  anaBuilder.setAnalysis(this.analysisItem.getAnalysis());
  Connection tdDataProvider=null;
  for (int i=0; i < columnListAANode.size(); i++) {
    if (columnListBBNode.size() > i) {
      ColumnDependencyIndicator indicator=ColumnsetFactory.eINSTANCE.createColumnDependencyIndicator();
      TdColumn columnA=(TdColumn)((MetadataColumnRepositoryObject)columnListAANode.get(i).getObject()).getTdColumn();
      TdColumn columnB=(TdColumn)((MetadataColumnRepositoryObject)columnListBBNode.get(i).getObject()).getTdColumn();
      indicator.setColumnA(columnA);
      indicator.setColumnB(columnB);
      indicator.setIndicatorDefinition(DefinitionHandler.getInstance().getFDRuleDefaultIndicatorDefinition());
      analysisItem.getAnalysis().getResults().getIndicators().add(indicator);
      anaBuilder.addElementToAnalyze(columnA,indicator);
      anaBuilder.addElementToAnalyze(columnB,indicator);
    }
  }
  if (columnListAANode.size() > 0) {
    reposObject=columnListAANode.get(0).getObject();
    tdDataProvider=((ConnectionItem)reposObject.getProperty().getItem()).getConnection();
    analysisItem.getAnalysis().getContext().setConnection(tdDataProvider);
    TypedReturnCode<Dependency> rc=DependenciesHandler.getInstance().setDependencyOn(analysisItem.getAnalysis(),tdDataProvider);
    if (!rc.isOk()) {
      log.info("String_Node_Str" + analysisItem.getAnalysis().getFileName());
    }
  }
 else {
    deleteConnectionDependency(analysisItem);
  }
  this.saveNumberOfConnectionsPerAnalysis();
  ReturnCode saved=new ReturnCode(false);
  this.nameText.setText(analysisItem.getAnalysis().getName());
  saved=ElementWriterFactory.getInstance().createAnalysisWrite().save(analysisItem,true);
  logSaved(saved);
  anaColumnCompareViewer.setDirty(false);
  dataFilterComp.setDirty(false);
}

Fixed version (ground truth):
@Override protected void saveAnalysis() throws DataprofilerCoreException {
  for (  Domain domain : this.analysisItem.getAnalysis().getParameters().getDataFilter()) {
    domain.setName(this.analysisItem.getAnalysis().getName());
  }
  IRepositoryViewObject reposObject=null;
  getAnalysisHandler().clearAnalysis();
  List<RepositoryNode> columnListAANode=anaColumnCompareViewer.getColumnListA();
  List<RepositoryNode> columnListBBNode=anaColumnCompareViewer.getColumnListB();
  AnalysisBuilder anaBuilder=new AnalysisBuilder();
  anaBuilder.setAnalysis(this.analysisItem.getAnalysis());
  Connection tdDataProvider=null;
  for (int i=0; i < columnListAANode.size(); i++) {
    if (columnListBBNode.size() > i) {
      ColumnDependencyIndicator indicator=ColumnsetFactory.eINSTANCE.createColumnDependencyIndicator();
      TdColumn columnA=(TdColumn)((MetadataColumnRepositoryObject)columnListAANode.get(i).getObject()).getTdColumn();
      TdColumn columnB=(TdColumn)((MetadataColumnRepositoryObject)columnListBBNode.get(i).getObject()).getTdColumn();
      indicator.setColumnA(columnA);
      indicator.setColumnB(columnB);
      indicator.setIndicatorDefinition(DefinitionHandler.getInstance().getFDRuleDefaultIndicatorDefinition());
      analysisItem.getAnalysis().getResults().getIndicators().add(indicator);
      anaBuilder.addElementToAnalyze(columnA,indicator);
      anaBuilder.addElementToAnalyze(columnB,indicator);
    }
  }
  if (columnListAANode.size() > 0) {
    reposObject=columnListAANode.get(0).getObject();
    tdDataProvider=((ConnectionItem)reposObject.getProperty().getItem()).getConnection();
    analysisItem.getAnalysis().getContext().setConnection(tdDataProvider);
    TypedReturnCode<Dependency> rc=DependenciesHandler.getInstance().setDependencyOn(analysisItem.getAnalysis(),tdDataProvider);
    if (!rc.isOk()) {
      log.info("String_Node_Str" + analysisItem.getAnalysis().getFileName());
    }
  }
 else {
    analysisItem.getAnalysis().getContext().setConnection(null);
  }
  this.saveNumberOfConnectionsPerAnalysis();
  ReturnCode saved=new ReturnCode(false);
  this.nameText.setText(analysisItem.getAnalysis().getName());
  saved=ElementWriterFactory.getInstance().createAnalysisWrite().save(analysisItem,true);
  logSaved(saved);
  anaColumnCompareViewer.setDirty(false);
  dataFilterComp.setDirty(false);
}