Program: 113073
Project: 113073
Buggy source:
/** 
 * This function will continue to read from the BlockingQueue until isTerminated is true and the queue is empty.
 */
@SuppressWarnings({"String_Node_Str","String_Node_Str"}) @Override public void run(){
  Map<PrimaryIndex,IndexWriter> indexWriters=new HashMap<PrimaryIndex,IndexWriter>();
  try {
    LOGGER.debug("String_Node_Str");
    while (true) {
      GeoWaveData<?> geowaveData=readQueue.poll(100,TimeUnit.MILLISECONDS);
      if (geowaveData == null) {
        if (isTerminated && readQueue.size() == 0) {
          break;
        }
        continue;
      }
      final WritableDataAdapter adapter=runData.getDataAdapter(geowaveData);
      if (adapter == null) {
        LOGGER.warn("String_Node_Str" + geowaveData.getValue());
        continue;
      }
      for (      final ByteArrayId indexId : geowaveData.getIndexIds()) {
        PrimaryIndex index=specifiedPrimaryIndexes.get(indexId);
        if (index == null) {
          index=requiredIndexMap.get(indexId);
          if (index == null) {
            LOGGER.warn("String_Node_Str" + indexId.getString() + "String_Node_Str"+ geowaveData.getValue());
            continue;
          }
        }
        if (!indexWriters.containsKey(index)) {
          indexWriters.put(index,runData.getIndexWriter(index));
        }
        IndexWriter writer=indexWriters.get(index);
        writer.write(adapter,geowaveData.getValue());
      }
    }
  }
 catch (  Exception e) {
    LOGGER.error("String_Node_Str",e);
    throw new RuntimeException("String_Node_Str",e);
  }
 finally {
    for (    Entry<PrimaryIndex,IndexWriter> writerEntry : indexWriters.entrySet()) {
      try {
        runData.releaseIndexWriter(writerEntry.getKey(),writerEntry.getValue());
      }
 catch (      Exception e) {
        LOGGER.warn(String.format("String_Node_Str",writerEntry.getKey()),e);
      }
    }
    LOGGER.debug("String_Node_Str");
  }
}

Fixed version (ground truth):
/** 
 * This function will continue to read from the BlockingQueue until isTerminated is true and the queue is empty.
 */
@SuppressWarnings({"String_Node_Str","String_Node_Str"}) @Override public void run(){
  Map<PrimaryIndex,IndexWriter> indexWriters=new HashMap<PrimaryIndex,IndexWriter>();
  int count=0;
  try {
    if (LOGGER.isDebugEnabled()) {
      LOGGER.debug(String.format("String_Node_Str",this.getId()));
    }
    while (true) {
      GeoWaveData<?> geowaveData=readQueue.poll(100,TimeUnit.MILLISECONDS);
      if (geowaveData == null) {
        if (isTerminated && readQueue.size() == 0) {
          break;
        }
        if (LOGGER.isDebugEnabled()) {
          LOGGER.debug(String.format("String_Node_Str",this.getId()));
        }
        continue;
      }
      final WritableDataAdapter adapter=runData.getDataAdapter(geowaveData);
      if (adapter == null) {
        LOGGER.warn(String.format("String_Node_Str",geowaveData.getValue(),this.getId()));
        continue;
      }
      for (      final ByteArrayId indexId : geowaveData.getIndexIds()) {
        PrimaryIndex index=specifiedPrimaryIndexes.get(indexId);
        if (index == null) {
          index=requiredIndexMap.get(indexId);
          if (index == null) {
            LOGGER.warn(String.format("String_Node_Str",indexId.getString(),geowaveData.getValue(),this.getId()));
            continue;
          }
        }
        if (!indexWriters.containsKey(index)) {
          indexWriters.put(index,runData.getIndexWriter(index));
        }
        IndexWriter writer=indexWriters.get(index);
        writer.write(adapter,geowaveData.getValue());
        count++;
      }
    }
  }
 catch (  Exception e) {
    LOGGER.error("String_Node_Str",e);
    throw new RuntimeException("String_Node_Str",e);
  }
 finally {
    for (    Entry<PrimaryIndex,IndexWriter> writerEntry : indexWriters.entrySet()) {
      try {
        runData.releaseIndexWriter(writerEntry.getKey(),writerEntry.getValue());
      }
 catch (      Exception e) {
        LOGGER.warn(String.format("String_Node_Str",writerEntry.getKey()),e);
      }
    }
    if (LOGGER.isDebugEnabled()) {
      LOGGER.debug(String.format("String_Node_Str",this.getId(),count));
    }
    isFinished=true;
  }
}