Program: 98297
Project: 98297
Buggy source:
private void addRecipes(){
  GameRegistry.addRecipe(new ItemStack(chocoboSaddleItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem,Character.valueOf('-'),Item.silk});
  GameRegistry.addRecipe(new ItemStack(chocoboSaddleItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addShapelessRecipe(new ItemStack(chocoboSaddleItem,1),new Object[]{Item.saddle,new ItemStack(chocoboFeatherItem,1)});
  GameRegistry.addRecipe(new ItemStack(chocoboSaddleBagsItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoboPackBagsItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('C'),Block.cloth,Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem,Character.valueOf('-'),Item.silk});
  GameRegistry.addRecipe(new ItemStack(chocopediaItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('B'),Item.book,Character.valueOf('F'),chocoboFeatherItem,Character.valueOf('I'),new ItemStack(Item.dyePowder,1,0),Character.valueOf('L'),new ItemStack(Item.dyePowder,1,4),Character.valueOf('G'),Item.goldNugget});
  GameRegistry.addShapelessRecipe(new ItemStack(chocoboWhistleItem,1),new Object[]{chocoboFeatherItem,new ItemStack(Item.ingotGold,1)});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlSeedsItem,3),new Object[]{new ItemStack(gysahlGreenBlock,1)});
  GameRegistry.addRecipe(new ItemStack(gysahlCakeItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('G'),gysahlGreenBlock,Character.valueOf('M'),Item.bucketMilk,Character.valueOf('S'),Item.sugar,Character.valueOf('W'),Item.wheat,Character.valueOf('E'),Item.egg});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlPinkItem,1),new Object[]{new ItemStack(gysahlGreenBlock,1),new ItemStack(Item.dyePowder,1,9)});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlRedItem,1),new Object[]{new ItemStack(gysahlGreenBlock,1),new ItemStack(Item.dyePowder,1,1)});
  GameRegistry.addRecipe(new ItemStack(chocoDisguiseHelmetItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoDisguisePlateItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoDisguiseLegsItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoDisguiseBootsItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addShapelessRecipe(new ItemStack(strawBlock,4),new Object[]{new ItemStack(Item.wheat,1)});
  GameRegistry.addRecipe(new ItemStack(Item.arrow,4),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('F'),Item.flint,Character.valueOf('S'),Item.stick,Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addShapelessRecipe(new ItemStack(Item.writableBook,1),new Object[]{new ItemStack(Item.book,1),new ItemStack(Item.dyePowder,1,0),new ItemStack(chocoboFeatherItem,1)});
}

Fixed version (ground truth):
private void addRecipes(){
  GameRegistry.addRecipe(new ItemStack(chocoboSaddleItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem,Character.valueOf('-'),Item.silk});
  GameRegistry.addRecipe(new ItemStack(chocoboSaddleItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addShapelessRecipe(new ItemStack(chocoboSaddleItem,1),new Object[]{Item.saddle,new ItemStack(chocoboFeatherItem,1)});
  GameRegistry.addRecipe(new ItemStack(chocoboSaddleBagsItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoboPackBagsItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('C'),Block.cloth,Character.valueOf('X'),Item.leather,Character.valueOf('Y'),chocoboFeatherItem,Character.valueOf('-'),Item.silk});
  GameRegistry.addRecipe(new ItemStack(chocopediaItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('B'),Item.book,Character.valueOf('F'),chocoboFeatherItem,Character.valueOf('I'),new ItemStack(Item.dyePowder,1,0),Character.valueOf('L'),new ItemStack(Item.dyePowder,1,4),Character.valueOf('G'),Item.goldNugget});
  GameRegistry.addShapelessRecipe(new ItemStack(chocoboWhistleItem,1),new Object[]{chocoboFeatherItem,new ItemStack(Item.ingotGold,1)});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlSeedsItem,3),new Object[]{new ItemStack(gysahlGreenBlock,1)});
  GameRegistry.addRecipe(new ItemStack(gysahlCakeItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('G'),gysahlGreenBlock,Character.valueOf('M'),Item.bucketMilk,Character.valueOf('S'),Item.sugar,Character.valueOf('W'),Item.wheat,Character.valueOf('E'),Item.egg});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlPicklesRawItem,2),new Object[]{new ItemStack(gysahlGreenBlock,1),new ItemStack(Item.sugar,1)});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlPinkItem,1),new Object[]{new ItemStack(gysahlGreenBlock,1),new ItemStack(Item.dyePowder,1,9)});
  GameRegistry.addShapelessRecipe(new ItemStack(gysahlRedItem,1),new Object[]{new ItemStack(gysahlGreenBlock,1),new ItemStack(Item.dyePowder,1,1)});
  GameRegistry.addRecipe(new ItemStack(chocoDisguiseHelmetItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoDisguisePlateItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoDisguiseLegsItem,1),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addRecipe(new ItemStack(chocoDisguiseBootsItem,1),new Object[]{"String_Node_Str","String_Node_Str",Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addShapelessRecipe(new ItemStack(strawBlock,4),new Object[]{new ItemStack(Item.wheat,1)});
  GameRegistry.addRecipe(new ItemStack(Item.arrow,4),new Object[]{"String_Node_Str","String_Node_Str","String_Node_Str",Character.valueOf('F'),Item.flint,Character.valueOf('S'),Item.stick,Character.valueOf('Y'),chocoboFeatherItem});
  GameRegistry.addShapelessRecipe(new ItemStack(Item.writableBook,1),new Object[]{new ItemStack(Item.book,1),new ItemStack(Item.dyePowder,1,0),new ItemStack(chocoboFeatherItem,1)});
}