Program: 159085
Project: 159085
Buggy source:
@Override public boolean apply(Game game,Ability source){
  Permanent permanent=game.getPermanent(this.sourceId);
  if (affectedObjectsSet) {
    permanent=affectedObjectList.get(0).getPermanent(game);
  }
 else {
    permanent=game.getPermanent(this.sourceId);
  }
  if (permanent == null) {
    discard();
    return false;
  }
  permanent.setName(target.getName());
  permanent.getColor().setColor(target.getColor());
  permanent.getManaCost().clear();
  permanent.getManaCost().add(target.getManaCost());
  permanent.getCardType().clear();
  for (  CardType type : target.getCardType()) {
    permanent.getCardType().add(type);
  }
  permanent.getSubtype().clear();
  for (  String type : target.getSubtype()) {
    permanent.getSubtype().add(type);
  }
  permanent.getSupertype().clear();
  for (  String type : target.getSupertype()) {
    permanent.getSupertype().add(type);
  }
  permanent.removeAllAbilities(source.getSourceId(),game);
  for (  Ability ability : target.getAbilities()) {
    permanent.addAbility(ability,getSourceId(),game,false);
  }
  permanent.getPower().setValue(target.getPower().getValue());
  permanent.getToughness().setValue(target.getToughness().getValue());
  if (target instanceof Permanent) {
    Permanent targetPermanent=(Permanent)target;
    permanent.setTransformed(targetPermanent.isTransformed());
    permanent.setSecondCardFace(targetPermanent.getSecondCardFace());
    permanent.setFlipCard(targetPermanent.isFlipCard());
    permanent.setFlipCardName(targetPermanent.getFlipCardName());
  }
  if (target instanceof PermanentCard) {
    permanent.setCardNumber(((PermanentCard)target).getCard().getCardNumber());
    permanent.setExpansionSetCode(((PermanentCard)target).getCard().getExpansionSetCode());
  }
 else   if (target instanceof PermanentToken || target instanceof Card) {
    permanent.setCardNumber(((Card)target).getCardNumber());
    permanent.setExpansionSetCode(((Card)target).getExpansionSetCode());
  }
  permanent.setCopy(true);
  return true;
}

Fixed version (ground truth):
@Override public boolean apply(Game game,Ability source){
  Permanent permanent;
  if (affectedObjectsSet) {
    permanent=affectedObjectList.get(0).getPermanent(game);
  }
 else {
    permanent=game.getPermanent(this.sourceId);
  }
  if (permanent == null) {
    discard();
    return false;
  }
  permanent.setName(target.getName());
  permanent.getColor().setColor(target.getColor());
  permanent.getManaCost().clear();
  permanent.getManaCost().add(target.getManaCost());
  permanent.getCardType().clear();
  for (  CardType type : target.getCardType()) {
    permanent.getCardType().add(type);
  }
  permanent.getSubtype().clear();
  for (  String type : target.getSubtype()) {
    permanent.getSubtype().add(type);
  }
  permanent.getSupertype().clear();
  for (  String type : target.getSupertype()) {
    permanent.getSupertype().add(type);
  }
  permanent.removeAllAbilities(source.getSourceId(),game);
  for (  Ability ability : target.getAbilities()) {
    permanent.addAbility(ability,getSourceId(),game,false);
  }
  permanent.getPower().setValue(target.getPower().getValue());
  permanent.getToughness().setValue(target.getToughness().getValue());
  if (target instanceof Permanent) {
    Permanent targetPermanent=(Permanent)target;
    permanent.setTransformed(targetPermanent.isTransformed());
    permanent.setSecondCardFace(targetPermanent.getSecondCardFace());
    permanent.setFlipCard(targetPermanent.isFlipCard());
    permanent.setFlipCardName(targetPermanent.getFlipCardName());
  }
  if (target instanceof PermanentCard) {
    permanent.setCardNumber(((PermanentCard)target).getCard().getCardNumber());
    permanent.setExpansionSetCode(((PermanentCard)target).getCard().getExpansionSetCode());
  }
 else   if (target instanceof PermanentToken || target instanceof Card) {
    permanent.setCardNumber(((Card)target).getCardNumber());
    permanent.setExpansionSetCode(((Card)target).getExpansionSetCode());
  }
  permanent.setCopy(true);
  return true;
}