Bump gitpython from 3.1.32 to 3.1.41 in /examples/research_projects/distillation
Author: dependabot[bot]
Pull request: yes
Labels: name: dependencies

name: python

Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.32 to 3.1.41.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a href="https://github.com/gitpython-developers/GitPython/releases">gitpython's releases</a>.</em></p>
<blockquote>
<h2>3.1.41 - fix Windows security issue</h2>
<p>The details about the Windows security issue <a href="https://github.com/gitpython-developers/GitPython/security/advisories/GHSA-2mqj-m65w-jghx">can be found in this advisory</a>.</p>
<p>Special thanks go to <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> who reported the issue and fixed it in a single stroke, while being responsible for an incredible amount of improvements that he contributed over the last couple of months ❤️.</p>
<h2>What's Changed</h2>
<ul>
<li>Add <code>__all__</code> in git.exc by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1719">gitpython-developers/GitPython#1719</a></li>
<li>Set submodule update cadence to weekly by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1721">gitpython-developers/GitPython#1721</a></li>
<li>Never modify sys.path by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1720">gitpython-developers/GitPython#1720</a></li>
<li>Bump git/ext/gitdb from <code>8ec2390</code> to <code>ec58b7e</code> by <a href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1722">gitpython-developers/GitPython#1722</a></li>
<li>Revise comments, docstrings, some messages, and a bit of code by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1725">gitpython-developers/GitPython#1725</a></li>
<li>Use zero-argument super() by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1726">gitpython-developers/GitPython#1726</a></li>
<li>Remove obsolete note in _iter_packed_refs by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1727">gitpython-developers/GitPython#1727</a></li>
<li>Reorganize test_util and make xfail marks precise by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1729">gitpython-developers/GitPython#1729</a></li>
<li>Clarify license and make module top comments more consistent by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1730">gitpython-developers/GitPython#1730</a></li>
<li>Deprecate compat.is_<!-- raw HTML omitted -->, rewriting all uses by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1732">gitpython-developers/GitPython#1732</a></li>
<li>Revise and restore some module docstrings by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1735">gitpython-developers/GitPython#1735</a></li>
<li>Make the rmtree callback Windows-only by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1739">gitpython-developers/GitPython#1739</a></li>
<li>List all non-passing tests in test summaries by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1740">gitpython-developers/GitPython#1740</a></li>
<li>Document some minor subtleties in test_util.py by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1749">gitpython-developers/GitPython#1749</a></li>
<li>Always read metadata files as UTF-8 in setup.py by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1748">gitpython-developers/GitPython#1748</a></li>
<li>Test native Windows on CI by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1745">gitpython-developers/GitPython#1745</a></li>
<li>Test macOS on CI by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1752">gitpython-developers/GitPython#1752</a></li>
<li>Let close_fds be True on all platforms by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1753">gitpython-developers/GitPython#1753</a></li>
<li>Fix IndexFile.from_tree on Windows by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1751">gitpython-developers/GitPython#1751</a></li>
<li>Remove unused TASKKILL fallback in AutoInterrupt by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1754">gitpython-developers/GitPython#1754</a></li>
<li>Don't return with operand when conceptually void by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1755">gitpython-developers/GitPython#1755</a></li>
<li>Group .gitignore entries by purpose by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1758">gitpython-developers/GitPython#1758</a></li>
<li>Adding dubious ownership handling by <a href="https://github.com/marioaag"><code>@​marioaag</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1746">gitpython-developers/GitPython#1746</a></li>
<li>Avoid brittle assumptions about preexisting temporary files in tests by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1759">gitpython-developers/GitPython#1759</a></li>
<li>Overhaul noqa directives by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1760">gitpython-developers/GitPython#1760</a></li>
<li>Clarify some Git.execute kill_after_timeout limitations by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1761">gitpython-developers/GitPython#1761</a></li>
<li>Bump actions/setup-python from 4 to 5 by <a href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1763">gitpython-developers/GitPython#1763</a></li>
<li>Don't install black on Cygwin by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1766">gitpython-developers/GitPython#1766</a></li>
<li>Extract all &quot;import gc&quot; to module level by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1765">gitpython-developers/GitPython#1765</a></li>
<li>Extract remaining local &quot;import gc&quot; to module level by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1768">gitpython-developers/GitPython#1768</a></li>
<li>Replace xfail with gc.collect in TestSubmodule.test_rename by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1767">gitpython-developers/GitPython#1767</a></li>
<li>Enable CodeQL by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1769">gitpython-developers/GitPython#1769</a></li>
<li>Replace some uses of the deprecated mktemp function by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1770">gitpython-developers/GitPython#1770</a></li>
<li>Bump github/codeql-action from 2 to 3 by <a href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1773">gitpython-developers/GitPython#1773</a></li>
<li>Run some Windows environment variable tests only on Windows by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1774">gitpython-developers/GitPython#1774</a></li>
<li>Fix TemporaryFileSwap regression where file_path could not be Path by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1776">gitpython-developers/GitPython#1776</a></li>
<li>Improve hooks tests by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1777">gitpython-developers/GitPython#1777</a></li>
<li>Fix if items of Index is of type PathLike by <a href="https://github.com/stegm"><code>@​stegm</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1778">gitpython-developers/GitPython#1778</a></li>
<li>Better document IterableObj.iter_items and improve some subclasses by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1780">gitpython-developers/GitPython#1780</a></li>
<li>Revert &quot;Don't install black on Cygwin&quot; by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1783">gitpython-developers/GitPython#1783</a></li>
<li>Add missing pip in $PATH on Cygwin CI by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1784">gitpython-developers/GitPython#1784</a></li>
<li>Shorten Iterable docstrings and put IterableObj first by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1785">gitpython-developers/GitPython#1785</a></li>
<li>Fix incompletely revised Iterable/IterableObj docstrings by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1786">gitpython-developers/GitPython#1786</a></li>
<li>Pre-deprecate setting Git.USE_SHELL by <a href="https://github.com/EliahKagan"><code>@​EliahKagan</code></a> in <a href="https://redirect.github.com/gitpython-developers/GitPython/pull/1782">gitpython-developers/GitPython#1782</a></li>
</ul>
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</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/f28873828496a6632b3a99101e3582ad164e9bb9"><code>f288738</code></a> bump patch level</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/ef3192cc414f2fd9978908454f6fd95243784c7f"><code>ef3192c</code></a> Merge pull request <a href="https://redirect.github.com/gitpython-developers/GitPython/issues/1792">#1792</a> from EliahKagan/popen</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/1f3caa31f1b63908235e341418a0804ed37a320a"><code>1f3caa3</code></a> Further clarify comment in test_hook_uses_shell_not_from_cwd</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/3eb7c2ab82e6dbe101ff916fca29d539cc2793af"><code>3eb7c2a</code></a> Move safer_popen from git.util to git.cmd</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/c551e916c7b9e2d623b9d76f3352849a707d9bbe"><code>c551e91</code></a> Extract shared logic for using Popen safely on Windows</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/15ebb258d4eebd9bf0f38780570d57e0b968b8de"><code>15ebb25</code></a> Clarify comment in test_hook_uses_shell_not_from_cwd</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/f44524a9a9c8122b9b98d6e5797e1dfc3211c0b7"><code>f44524a</code></a> Avoid spurious &quot;location may have moved&quot; on Windows</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/a42ea0a38c489caf9969836141120d760d3754b4"><code>a42ea0a</code></a> Cover absent/no-distro bash.exe in hooks &quot;not from cwd&quot; test</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/7751436b94d96ce0978b301681b851edd6efed63"><code>7751436</code></a> Extract venv management from test_installation</li>
<li><a href="https://github.com/gitpython-developers/GitPython/commit/66ff4c177accfb4f21d3eb476381d248d99fd8b5"><code>66ff4c1</code></a> Omit CWD in search for bash.exe to run hooks on Windows</li>
<li>Additional commits viewable in <a href="https://github.com/gitpython-developers/GitPython/compare/3.1.32...3.1.41">compare view</a></li>
</ul>
</details>
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