Roberta weights are not initialized loading the bare Roberta
Author: ZahraAbbasiantaeb
Pull request: no
Labels: name: wontfix

## Environment info
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- `transformers` version: '3.4.0'
- Platform: Colab 
- Python version:
- PyTorch version (GPU?):
- Tensorflow version (GPU?): 2.3.0
- Using GPU in script?: yes
- Using distributed or parallel set-up in script?: no

### Who can help
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 albert, bert, GPT2, XLM: @LysandreJik 
 tokenizers: @mfuntowicz
 Trainer: @sgugger
 Speed and Memory Benchmarks: @patrickvonplaten
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 Translation: @sshleifer
 Summarization: @sshleifer
 TextGeneration: @TevenLeScao 
 examples/distillation: @VictorSanh
 nlp datasets: [different repo](https://github.com/huggingface/nlp)
 rust tokenizers: [different repo](https://github.com/huggingface/tokenizers)
 Text Generation: @TevenLeScao
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 Longformer/Reformer: @patrickvonplaten
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 examples/token-classification: @stefan-it
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## Information

Model I am using (Bert, XLNet ...):

The problem arises when using:
* [x] the official example scripts: (give details below)
* [*] my own modified scripts: (give details below)

class ROBERTA(transformers.TFRobertaModel):

    def __init__(self, config, *inputs, **kwargs):
        super(ROBERTA, self).__init__(config, *inputs, **kwargs)
        self.roberta.call = tf.function(self.roberta.call)

def build_model():

    # Define inputs (token_ids, mask_ids, seg_ids)
    input_size = 2 * Each_seq_length + 4
    token_inputs = tf.keras.layers.Input(shape=(input_size,), name='word_inputs', dtype='int32')
    
    # Load model and collect encodings

    roberta = ROBERTA.from_pretrained('roberta-base')
    print(roberta.config)
    roberta_encodings = roberta(token_inputs, training=True)[0]

    # Keep [CLS] token encoding
    doc_encoding = tf.squeeze(roberta_encodings[:, 0:1, :], axis=1)

   # Apply dropout
    doc_encoding = tf.keras.layers.Dropout(0.1)(doc_encoding)

    # Final output (projection) layer
    # predicted_labels, log_probs = CF_model(0.5, 8)(doc_encoding)
    
    # In the case of one layer for prediction
    # outputs = tf.keras.layers.Dense(1, activation='sigmoid', name='outputs')(doc_encoding)

    # Wrap-up model
    model = tf.keras.models.Model(inputs=[token_inputs], outputs=[outputs])
    model.compile(optimizer=tf.keras.optimizers.Adam(lr=4e-6, epsilon=1e-8), loss=tf.keras.losses.BinaryCrossentropy())

    return model



The tasks I am working on is:
* [ ] an official GLUE/SQUaD task: (give the name)
* [*] my own task or dataset: (give details below)
## To reproduce
sentence-pair classification

Steps to reproduce the behavior:

1.
2.
3.

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## Expected behavior
previously, just the 'lm_head' layers were not initialized but now, using the same script more weights are not initialized including the encoder layers. Following error:
Some layers from the model checkpoint at roberta-base were not used when initializing ROBERTA: ['lm_head', 'encoder/layer_._3/attention/self/value/bias:0', 'encoder/layer_._10/attention/self/value/bias:0', 'encoder/layer_._10/attention/self/key/kernel:0', 'pooler/dense/bias:0', 'encoder/layer_._9/attention/self/query/kernel:0', 'encoder/layer_._10/attention/self/query/kernel:0', 'encoder/layer_._7/attention/output/dense/bias:0', 'embeddings/position_embeddings/embeddings:0', 'encoder/layer_._6/intermediate/dense/kernel:0', 'encoder/layer_._11/intermediate/dense/kernel:0', 'encoder/layer_._8/intermediate/dense/bias:0', 'encoder/layer_._10/attention/self/value/kernel:0', 'encoder/layer_._7/output/dense/bias:0', 'encoder/layer_._6/attention/self/value/bias:0', 'encoder/layer_._8/attention/output/dense/kernel:0', 'encoder/layer_._10/intermediate/dense/kernel:0', 'encoder/layer_._5/attention/self/value/kernel:0', 'encoder/layer_._6/attention/output/LayerNorm/gamma:0', 'encoder/layer_._7/attention/self/query/kernel:0', 'encoder/layer_._6/attention/self/query/kernel:0', 'encoder/layer_._6/attention/self/key/bias:0', 'encoder/layer_._8/attention/output/LayerNorm/gamma:0', 'encoder/layer_._2/output/dense/kernel:0', 'encoder/layer_._11/intermediate/dense/bias:0', 'encoder/layer_._6/output/dense/kernel:0', 'encoder/layer_._2/intermediate/dense/kernel:0', 'encoder/layer_._3/intermediate/dense/kernel:0', 'encoder/layer_._10/output/LayerNorm/beta:0', 'encoder/layer_._6/attention/self/query/bias:0', 'encoder/layer_._6/attention/output/LayerNorm/beta:0', 'encoder/layer_._9/attention/self/value/bias:0', 'encoder/layer_._8/attention/self/query/kernel:0', 'encoder/layer_._0/output/LayerNorm/gamma:0', 'encoder/layer_._11/attention/output/dense/bias:0', 'encoder/layer_._7/attention/self/value/bias:0', 'encoder/layer_._0/attention/output/dense/kernel:0', 'encoder/layer_._9/intermediate/dense/bias:0', 'encoder/layer_._2/attention/self/query/kernel:0', 'encoder/layer_._0/attention/self/key/bias:0', 'encoder/layer_._8/attention/output/LayerNorm/beta:0', 'encoder/layer_._1/attention/self/value/kernel:0', 'encoder/layer_._6/output/LayerNorm/gamma:0', 'encoder/layer_._1/attention/output/dense/bias:0', 'encoder/layer_._3/attention/self/query/bias:0', 'encoder/layer_._3/output/dense/bias:0', 'encoder/layer_._1/attention/self/key/kernel:0', 'encoder/layer_._8/attention/self/key/kernel:0', 'encoder/layer_._9/intermediate/dense/kernel:0', 'encoder/layer_._3/output/dense/kernel:0', 'encoder/layer_._2/output/LayerNorm/beta:0', 'encoder/layer_._7/attention/self/key/bias:0', 'encoder/layer_._5/attention/self/key/kernel:0', 'encoder/layer_._5/attention/self/query/bias:0', 'encoder/layer_._2/attention/output/dense/bias:0', 'encoder/layer_._4/intermediate/dense/kernel:0', 'encoder/layer_._1/intermediate/dense/bias:0', 'encoder/layer_._4/attention/self/value/kernel:0', 'encoder/layer_._11/attention/self/key/bias:0', 'encoder/layer_._5/output/dense/kernel:0', 'encoder/layer_._1/output/dense/bias:0', 'encoder/layer_._0/attention/self/value/bias:0', 'encoder/layer_._6/attention/self/key/kernel:0', 'encoder/layer_._9/attention/self/key/bias:0', 'encoder/layer_._7/output/LayerNorm/gamma:0', 'encoder/layer_._8/attention/output/dense/bias:0', 'encoder/layer_._10/attention/output/dense/bias:0', 'encoder/layer_._0/intermediate/dense/kernel:0', 'encoder/layer_._5/intermediate/dense/kernel:0', 'encoder/layer_._11/attention/self/value/kernel:0', 'encoder/layer_._8/attention/self/key/bias:0', 'encoder/layer_._8/output/dense/bias:0', 'encoder/layer_._8/intermediate/dense/kernel:0', 'encoder/layer_._7/attention/output/LayerNorm/beta:0', 'encoder/layer_._2/output/dense/bias:0', 'encoder/layer_._3/attention/output/dense/bias:0', 'encoder/layer_._0/output/dense/bias:0', 'encoder/layer_._9/attention/self/key/kernel:0', 'encoder/layer_._11/output/dense/bias:0', 'encoder/layer_._7/attention/self/query/bias:0', 'encoder/layer_._10/attention/self/key/bias:0', 'encoder/layer_._2/attention/output/dense/kernel:0', 'encoder/layer_._2/attention/self/query/bias:0', 'encoder/layer_._9/attention/output/dense/kernel:0', 'encoder/layer_._9/attention/output/LayerNorm/gamma:0', 'encoder/layer_._9/output/LayerNorm/gamma:0', 'encoder/layer_._0/attention/output/LayerNorm/beta:0', 'encoder/layer_._1/intermediate/dense/kernel:0', 'encoder/layer_._1/output/dense/kernel:0', 'encoder/layer_._1/attention/self/key/bias:0', 'encoder/layer_._2/attention/self/value/kernel:0', 'encoder/layer_._9/attention/self/value/kernel:0', 'encoder/layer_._10/intermediate/dense/bias:0', 'encoder/layer_._4/intermediate/dense/bias:0', 'encoder/layer_._6/output/LayerNorm/beta:0', 'encoder/layer_._7/output/LayerNorm/beta:0', 'encoder/layer_._11/attention/self/query/bias:0', 'encoder/layer_._0/intermediate/dense/bias:0', 'encoder/layer_._11/attention/output/dense/kernel:0', 'encoder/layer_._5/attention/self/query/kernel:0', 'encoder/layer_._8/attention/self/value/kernel:0', 'encoder/layer_._11/output/LayerNorm/beta:0', 'encoder/layer_._9/output/dense/bias:0', 'encoder/layer_._4/output/dense/bias:0', 'encoder/layer_._2/attention/self/key/bias:0', 'encoder/layer_._3/attention/self/query/kernel:0', 'encoder/layer_._4/attention/output/LayerNorm/gamma:0', 'encoder/layer_._1/attention/output/LayerNorm/beta:0', 'encoder/layer_._1/output/LayerNorm/beta:0', 'encoder/layer_._10/attention/output/LayerNorm/beta:0', 'encoder/layer_._3/attention/self/value/kernel:0', 'encoder/layer_._10/attention/self/query/bias:0', 'encoder/layer_._3/attention/self/key/bias:0', 'pooler/dense/kernel:0', 'encoder/layer_._1/attention/self/value/bias:0', 'encoder/layer_._7/attention/self/key/kernel:0', 'encoder/layer_._1/attention/output/dense/kernel:0', 'encoder/layer_._4/attention/self/key/kernel:0', 'encoder/layer_._8/output/dense/kernel:0', 'encoder/layer_._3/attention/output/LayerNorm/gamma:0', 'encoder/layer_._0/attention/self/value/kernel:0', 'encoder/layer_._3/attention/self/key/kernel:0', 'encoder/layer_._0/attention/self/query/kernel:0', 'encoder/layer_._3/intermediate/dense/bias:0', 'encoder/layer_._7/output/dense/kernel:0', 'encoder/layer_._10/output/dense/kernel:0', 'encoder/layer_._7/intermediate/dense/bias:0', 'embeddings/word_embeddings/weight:0', 'encoder/layer_._3/attention/output/LayerNorm/beta:0', 'encoder/layer_._0/attention/self/key/kernel:0', 'encoder/layer_._4/output/dense/kernel:0', 'encoder/layer_._5/output/LayerNorm/gamma:0', 'encoder/layer_._9/attention/output/dense/bias:0', 'encoder/layer_._0/attention/output/dense/bias:0', 'encoder/layer_._5/attention/output/LayerNorm/gamma:0', 'encoder/layer_._9/attention/output/LayerNorm/beta:0', 'encoder/layer_._11/output/LayerNorm/gamma:0', 'encoder/layer_._11/attention/output/LayerNorm/gamma:0', 'encoder/layer_._6/intermediate/dense/bias:0', 'encoder/layer_._2/attention/output/LayerNorm/gamma:0', 'encoder/layer_._5/output/dense/bias:0', 'encoder/layer_._0/output/dense/kernel:0', 'encoder/layer_._6/attention/output/dense/kernel:0', 'encoder/layer_._6/attention/output/dense/bias:0', 'encoder/layer_._1/attention/self/query/kernel:0', 'encoder/layer_._0/attention/self/query/bias:0', 'encoder/layer_._11/attention/self/value/bias:0', 'encoder/layer_._2/intermediate/dense/bias:0', 'embeddings/LayerNorm/beta:0', 'encoder/layer_._4/attention/output/dense/kernel:0', 'encoder/layer_._3/output/LayerNorm/beta:0', 'encoder/layer_._8/output/LayerNorm/gamma:0', 'encoder/layer_._10/attention/output/dense/kernel:0', 'encoder/layer_._11/output/dense/kernel:0', 'encoder/layer_._2/attention/output/LayerNorm/beta:0', 'encoder/layer_._7/attention/output/dense/kernel:0', 'encoder/layer_._9/attention/self/query/bias:0', 'encoder/layer_._4/attention/self/key/bias:0', 'encoder/layer_._2/output/LayerNorm/gamma:0', 'encoder/layer_._0/attention/output/LayerNorm/gamma:0', 'encoder/layer_._1/attention/output/LayerNorm/gamma:0', 'encoder/layer_._1/attention/self/query/bias:0', 'encoder/layer_._5/attention/output/LayerNorm/beta:0', 'encoder/layer_._10/output/dense/bias:0', 'encoder/layer_._8/output/LayerNorm/beta:0', 'encoder/layer_._5/output/LayerNorm/beta:0', 'embeddings/token_type_embeddings/embeddings:0', 'encoder/layer_._5/attention/output/dense/bias:0', 'encoder/layer_._4/output/LayerNorm/beta:0', 'encoder/layer_._4/attention/self/query/kernel:0', 'encoder/layer_._5/attention/output/dense/kernel:0', 'encoder/layer_._7/attention/self/value/kernel:0', 'encoder/layer_._7/intermediate/dense/kernel:0', 'encoder/layer_._11/attention/self/key/kernel:0', 'encoder/layer_._3/output/LayerNorm/gamma:0', 'encoder/layer_._10/output/LayerNorm/gamma:0', 'encoder/layer_._8/attention/self/query/bias:0', 'encoder/layer_._3/attention/output/dense/kernel:0', 'encoder/layer_._4/output/LayerNorm/gamma:0', 'encoder/layer_._10/attention/output/LayerNorm/gamma:0', 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