-- DBMS: snowflake
create or replace TABLE MASKED_SOMATIC_MUTATION_HG38_GDC_R34 (
	"project_short_name" VARCHAR(16777216),
	"case_barcode" VARCHAR(16777216),
	"primary_site" VARCHAR(16777216),
	"Hugo_Symbol" VARCHAR(16777216),
	"Entrez_Gene_Id" NUMBER(38,0),
	"Center" VARCHAR(16777216),
	"NCBI_Build" VARCHAR(16777216),
	"Chromosome" VARCHAR(16777216),
	"Start_Position" NUMBER(38,0),
	"End_Position" NUMBER(38,0),
	"Strand" VARCHAR(16777216),
	"Variant_Classification" VARCHAR(16777216),
	"Variant_Type" VARCHAR(16777216),
	"Reference_Allele" VARCHAR(16777216),
	"Tumor_Seq_Allele1" VARCHAR(16777216),
	"Tumor_Seq_Allele2" VARCHAR(16777216),
	"dbSNP_RS" VARCHAR(16777216),
	"dbSNP_Val_Status" VARCHAR(16777216),
	"Tumor_Aliquot_Barcode" VARCHAR(16777216),
	"Matched_Norm_Aliquot_Barcode" VARCHAR(16777216),
	"Match_Norm_Seq_Allele1" VARCHAR(16777216),
	"Match_Norm_Seq_Allele2" VARCHAR(16777216),
	"Tumor_Validation_Allele1" VARCHAR(16777216),
	"Tumor_Validation_Allele2" VARCHAR(16777216),
	"Match_Norm_Validation_Allele1" VARCHAR(16777216),
	"Match_Norm_Validation_Allele2" VARCHAR(16777216),
	"Verification_Status" VARCHAR(16777216),
	"Validation_Status" VARCHAR(16777216),
	"Mutation_Status" VARCHAR(16777216),
	"Sequencing_Phase" VARCHAR(16777216),
	"Sequence_Source" VARCHAR(16777216),
	"Validation_Method" VARCHAR(16777216),
	"Score" VARCHAR(16777216),
	"BAM_File" VARCHAR(16777216),
	"Sequencer" VARCHAR(16777216),
	"Tumor_Aliquot_UUID" VARCHAR(16777216),
	"Matched_Norm_Aliquot_UUID" VARCHAR(16777216),
	"HGVSc" VARCHAR(16777216),
	"HGVSp" VARCHAR(16777216),
	"HGVSp_Short" VARCHAR(16777216),
	"Transcript_ID" VARCHAR(16777216),
	"Exon_Number" VARCHAR(16777216),
	"t_depth" NUMBER(38,0),
	"t_ref_count" NUMBER(38,0),
	"t_alt_count" NUMBER(38,0),
	"n_depth" NUMBER(38,0),
	"n_ref_count" VARCHAR(16777216),
	"n_alt_count" VARCHAR(16777216),
	"all_effects" VARCHAR(16777216),
	"Allele" VARCHAR(16777216),
	"Gene" VARCHAR(16777216),
	"Feature" VARCHAR(16777216),
	"Feature_type" VARCHAR(16777216),
	"One_Consequence" VARCHAR(16777216),
	"Consequence" VARCHAR(16777216),
	"cDNA_position" VARCHAR(16777216),
	"CDS_position" VARCHAR(16777216),
	"Protein_position" VARCHAR(16777216),
	"Amino_acids" VARCHAR(16777216),
	"Codons" VARCHAR(16777216),
	"Existing_variation" VARCHAR(16777216),
	DISTANCE VARCHAR(16777216),
	TRANSCRIPT_STRAND VARCHAR(16777216),
	SYMBOL VARCHAR(16777216),
	SYMBOL_SOURCE VARCHAR(16777216),
	HGNC_ID VARCHAR(16777216),
	BIOTYPE VARCHAR(16777216),
	CANONICAL VARCHAR(16777216),
	CCDS VARCHAR(16777216),
	ENSP VARCHAR(16777216),
	SWISSPROT VARCHAR(16777216),
	TREMBL VARCHAR(16777216),
	UNIPARC VARCHAR(16777216),
	UNIPROT_ISOFORM VARCHAR(16777216),
	"RefSeq" VARCHAR(16777216),
	MANE VARCHAR(16777216),
	APPRIS VARCHAR(16777216),
	FLAGS VARCHAR(16777216),
	SIFT VARCHAR(16777216),
	"PolyPhen" VARCHAR(16777216),
	EXON VARCHAR(16777216),
	INTRON VARCHAR(16777216),
	DOMAINS VARCHAR(16777216),
	"ThousG_AF" FLOAT,
	"ThousG_AFR_AF" FLOAT,
	"ThousG_AMR_AF" FLOAT,
	"ThousG_EAS_AF" FLOAT,
	"ThousG_EUR_AF" FLOAT,
	"ThousG_SAS_AF" FLOAT,
	ESP_AA_AF FLOAT,
	ESP_EA_AF FLOAT,
	"gnomAD_AF" FLOAT,
	"gnomAD_AFR_AF" FLOAT,
	"gnomAD_AMR_AF" FLOAT,
	"gnomAD_ASJ_AF" FLOAT,
	"gnomAD_EAS_AF" FLOAT,
	"gnomAD_FIN_AF" FLOAT,
	"gnomAD_NFE_AF" FLOAT,
	"gnomAD_OTH_AF" FLOAT,
	"gnomAD_SAS_AF" FLOAT,
	MAX_AF FLOAT,
	MAX_AF_POPS VARCHAR(16777216),
	"gnomAD_non_cancer_AF" FLOAT,
	"gnomAD_non_cancer_AFR_AF" FLOAT,
	"gnomAD_non_cancer_AMI_AF" FLOAT,
	"gnomAD_non_cancer_AMR_AF" FLOAT,
	"gnomAD_non_cancer_ASJ_AF" FLOAT,
	"gnomAD_non_cancer_EAS_AF" FLOAT,
	"gnomAD_non_cancer_FIN_AF" FLOAT,
	"gnomAD_non_cancer_MID_AF" FLOAT,
	"gnomAD_non_cancer_NFE_AF" FLOAT,
	"gnomAD_non_cancer_OTH_AF" FLOAT,
	"gnomAD_non_cancer_SAS_AF" FLOAT,
	"gnomAD_non_cancer_MAX_AF_adj" FLOAT,
	"gnomAD_non_cancer_MAX_AF_POPS_adj" VARCHAR(16777216),
	CLIN_SIG VARCHAR(16777216),
	SOMATIC VARCHAR(16777216),
	PUBMED VARCHAR(16777216),
	TRANSCRIPTION_FACTORS VARCHAR(16777216),
	MOTIF_NAME VARCHAR(16777216),
	MOTIF_POS VARCHAR(16777216),
	HIGH_INF_POS VARCHAR(16777216),
	MOTIF_SCORE_CHANGE VARCHAR(16777216),
	"miRNA" VARCHAR(16777216),
	IMPACT VARCHAR(16777216),
	PICK VARCHAR(16777216),
	VARIANT_CLASS VARCHAR(16777216),
	TSL VARCHAR(16777216),
	HGVS_OFFSET VARCHAR(16777216),
	PHENO VARCHAR(16777216),
	GENE_PHENO VARCHAR(16777216),
	CONTEXT VARCHAR(16777216),
	"tumor_submitter_uuid" VARCHAR(16777216),
	"normal_submitter_uuid" VARCHAR(16777216),
	"case_id" VARCHAR(16777216),
	GDC_FILTER VARCHAR(16777216),
	COSMIC VARCHAR(16777216),
	"hotspot" BOOLEAN,
	"RNA_Support" VARCHAR(16777216),
	"RNA_depth" VARCHAR(16777216),
	"RNA_ref_count" VARCHAR(16777216),
	"RNA_alt_count" VARCHAR(16777216),
	"callers" VARCHAR(16777216),
	"file_gdc_id" VARCHAR(16777216),
	"muse" VARCHAR(16777216),
	"mutect2" VARCHAR(16777216),
	"pindel" VARCHAR(16777216),
	"somaticsniper" VARCHAR(16777216),
	"varscan2" VARCHAR(16777216),
	"sample_barcode_tumor" VARCHAR(16777216),
	"sample_barcode_normal" VARCHAR(16777216),
	"aliquot_barcode_tumor" VARCHAR(16777216),
	"aliquot_barcode_normal" VARCHAR(16777216)
);

INSERT INTO "TCGA_MITELMAN"."TCGA_VERSIONED"."MASKED_SOMATIC_MUTATION_HG38_GDC_R34" (CLIN_SIG, gnomAD_NFE_AF, all_effects, Sequencing_Phase, Exon_Number, UNIPARC, Tumor_Aliquot_Barcode, mutect2, n_ref_count, Sequence_Source, Verification_Status, GDC_FILTER, Tumor_Seq_Allele1, Center, aliquot_barcode_tumor, HGVSp, RNA_alt_count, gnomAD_non_cancer_EAS_AF, primary_site, EXON, pindel, Tumor_Validation_Allele1, Feature, Validation_Status, TRANSCRIPT_STRAND, ThousG_EAS_AF, ThousG_AFR_AF, Reference_Allele, ESP_EA_AF, MOTIF_SCORE_CHANGE, CANONICAL, Matched_Norm_Aliquot_Barcode, Protein_position, cDNA_position, gnomAD_non_cancer_AF, gnomAD_non_cancer_MID_AF, PolyPhen, n_alt_count, ENSP, CCDS, SYMBOL, Tumor_Aliquot_UUID, gnomAD_non_cancer_AMI_AF, Strand, IMPACT, SIFT, gnomAD_non_cancer_FIN_AF, Entrez_Gene_Id, HGVSp_Short, gnomAD_SAS_AF, dbSNP_RS, gnomAD_AF, NCBI_Build, HGVSc, Match_Norm_Seq_Allele1, ThousG_AF, SOMATIC, tumor_submitter_uuid, varscan2, PHENO, muse, case_barcode, ThousG_EUR_AF, file_gdc_id, VARIANT_CLASS, SWISSPROT, Start_Position, gnomAD_non_cancer_NFE_AF, Chromosome, DOMAINS, gnomAD_non_cancer_OTH_AF, Gene, PUBMED, gnomAD_AMR_AF, hotspot, MOTIF_NAME, normal_submitter_uuid, aliquot_barcode_normal, BAM_File, Tumor_Seq_Allele2, gnomAD_non_cancer_AMR_AF, case_id, t_depth, Sequencer, CDS_position, callers, Match_Norm_Validation_Allele2, gnomAD_non_cancer_AFR_AF, ThousG_SAS_AF, gnomAD_non_cancer_MAX_AF_POPS_adj, gnomAD_EAS_AF, gnomAD_OTH_AF, gnomAD_AFR_AF, Tumor_Validation_Allele2, End_Position, t_alt_count, gnomAD_ASJ_AF, RNA_depth, MOTIF_POS, miRNA, Validation_Method, Transcript_ID, CONTEXT, Feature_type, BIOTYPE, One_Consequence, TSL, MANE, Amino_acids, SYMBOL_SOURCE, GENE_PHENO, TRANSCRIPTION_FACTORS, HGNC_ID, PICK, COSMIC, HGVS_OFFSET, Variant_Classification, ThousG_AMR_AF, MAX_AF_POPS, gnomAD_non_cancer_ASJ_AF, UNIPROT_ISOFORM, FLAGS, n_depth, sample_barcode_normal, Existing_variation, RNA_Support, project_short_name, ESP_AA_AF, RNA_ref_count, sample_barcode_tumor, gnomAD_non_cancer_MAX_AF_adj, APPRIS, DISTANCE, MAX_AF, Hugo_Symbol, Consequence, Matched_Norm_Aliquot_UUID, Variant_Type, gnomAD_FIN_AF, RefSeq, INTRON, Match_Norm_Validation_Allele1, Score, t_ref_count, gnomAD_non_cancer_SAS_AF, Allele, Codons, TREMBL, dbSNP_Val_Status, somaticsniper, Match_Norm_Seq_Allele2, HIGH_INF_POS, Mutation_Status) VALUES (NULL, NULL, 'SIPA1L2,missense_variant,p.R1139I,ENST00000674749,,c.3416G>T,MODERATE,,deleterious(0.01),possibly_damaging(0.498),-1;SIPA1L2,missense_variant,p.R1139I,ENST00000674635,NM_020808.5,c.3416G>T,MODERATE,,deleterious(0),benign(0.006),-1;SIPA1L2,missense_variant,p.R1139I,ENST00000675407,,c.3416G>T,MODERATE,,deleterious(0.01),possibly_damaging(0.498),-1;SIPA1L2,missense_variant,p.R1139I,ENST00000676213,,c.3416G>T,MODERATE,YES,deleterious(0.01),benign(0.378),-1;SIPA1L2,missense_variant,p.R1139I,ENST00000366630,,c.3416G>T,MODERATE,,deleterious(0),benign(0.006),-1;SIPA1L2,missense_variant,p.R1139I,ENST00000675685,NM_001377488.1,c.3416G>T,MODERATE,,deleterious(0.01),possibly_damaging(0.498),-1;SIPA1L2,missense_variant,p.R1139I,ENST00000262861,,c.3416G>T,MODERATE,,deleterious(0),benign(0.006),-1;SIPA1L2,missense_variant,p.R213I,ENST00000308942,,c.638G>T,MODERATE,,deleterious(0.01),possibly_damaging(0.753),-1;SIPA1L2,3_prime_UTR_variant,,ENST00000674801,,c.*1038G>T,MODIFIER,,,,-1', NULL, '10/21', 'UPI00001D7D6A', 'TCGA-B5-A0JY-01A-11D-A10B-09', 'Yes', NULL, NULL, NULL, NULL, 'C', 'WUGSC', 'TCGA-B5-A0JY-01A-11D-A10B-09', 'p.Arg1139Ile', NULL, NULL, 'Corpus uteri', '10/21', 'No', NULL, 'ENST00000262861', NULL, '-1', NULL, NULL, 'C', NULL, NULL, NULL, 'TCGA-B5-A0JY-10A-01D-A10O-09', '1139/1722', '3643/6555', NULL, NULL, 'benign(0.006)', NULL, 'ENSP00000262861', 'CCDS41474.1', 'SIPA1L2', '5b7c3959-a2be-493e-abe2-ab19eecb946f', NULL, '+', 'MODERATE', 'deleterious(0)', NULL, 57568, 'p.R1139I', NULL, NULL, NULL, 'GRCh38', 'c.3416G>T', NULL, NULL, '1', 'c12dd9a6-5939-483c-9ced-c34dd3bd3d6d', 'Yes', '1', 'Yes', 'TCGA-B5-A0JY', NULL, '6bdadc76-9ea5-4cc2-8999-6e3d27d91a5f', 'SNV', 'Q9P2F8.158', 232443623, NULL, 'chr1', 'PANTHER:PTHR15711;PANTHER:PTHR15711:SF7', NULL, 'ENSG00000116991', NULL, NULL, False, NULL, '911820f0-d3ec-4d51-82a6-de0dae8d69a6', 'TCGA-B5-A0JY-10A-01D-A10O-09', NULL, 'A', NULL, '61935424-44d0-4211-81c1-c925e436eac5', 221, NULL, '3416/5169', 'muse;mutect2;varscan2', NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 232443623, 69, NULL, NULL, NULL, NULL, NULL, 'ENST00000262861', 'GTGGTCTCCAG', 'Transcript', 'protein_coding', 'missense_variant', '1', NULL, 'R/I', 'HGNC', NULL, NULL, 'HGNC:23800', NULL, 'COSM4869771;COSM905573', NULL, 'Missense_Mutation', NULL, NULL, NULL, 'Q9P2F8-1', NULL, 169, 'TCGA-B5-A0JY-10A', 'COSV53385903', 'Unknown', 'TCGA-UCEC', NULL, NULL, 'TCGA-B5-A0JY-01A', NULL, 'P2', NULL, NULL, 'SIPA1L2', 'missense_variant', 'ccebab6c-dffb-431e-9bce-bdd0c824ebf4', 'SNP', NULL, NULL, NULL, NULL, NULL, 152, NULL, 'A', 'aGa/aTa', NULL, NULL, 'No', NULL, NULL, 'Somatic'), (NULL, NULL, 'NAV2,missense_variant,p.K535Q,ENST00000396085,NM_182964.6,c.1603A>C,MODERATE,,deleterious(0),probably_damaging(0.948),1;NAV2,missense_variant,p.K535Q,ENST00000349880,NM_145117.5,c.1603A>C,MODERATE,,deleterious(0),possibly_damaging(0.876),1;NAV2,missense_variant,p.K558Q,ENST00000527559,,c.1672A>C,MODERATE,YES,deleterious(0),probably_damaging(0.999),1;NAV2,missense_variant,p.K535Q,ENST00000540292,,c.1603A>C,MODERATE,,deleterious(0),probably_damaging(0.997),1;NAV2,missense_variant,p.K471Q,ENST00000360655,NM_001111018.2,c.1411A>C,MODERATE,,deleterious(0),possibly_damaging(0.849),1;NAV2,missense_variant,p.K558Q,ENST00000396087,NM_001244963.2,c.1672A>C,MODERATE,,deleterious(0),possibly_damaging(0.711),1;NAV2,downstream_gene_variant,,ENST00000528008,,,MODIFIER,,,,1', NULL, '8/41', 'UPI00001E0580', 'TCGA-B5-A0JY-01A-11D-A10B-09', 'Yes', NULL, NULL, NULL, NULL, 'A', 'WUGSC', 'TCGA-B5-A0JY-01A-11D-A10B-09', 'p.Lys558Gln', NULL, NULL, 'Corpus uteri', '8/41', 'No', NULL, 'ENST00000396087', NULL, '1', NULL, NULL, 'A', NULL, NULL, NULL, 'TCGA-B5-A0JY-10A-01D-A10O-09', '558/2488', '1771/7882', NULL, NULL, 'possibly_damaging(0.711)', NULL, 'ENSP00000379396', 'CCDS58126.1', 'NAV2', '5b7c3959-a2be-493e-abe2-ab19eecb946f', NULL, '+', 'MODERATE', 'deleterious(0)', NULL, 89797, 'p.K558Q', NULL, NULL, NULL, 'GRCh38', 'c.1672A>C', NULL, NULL, '1', 'c12dd9a6-5939-483c-9ced-c34dd3bd3d6d', 'Yes', '1', 'Yes', 'TCGA-B5-A0JY', NULL, '6bdadc76-9ea5-4cc2-8999-6e3d27d91a5f', 'SNV', 'Q8IVL1.144', 19933847, NULL, 'chr11', 'PANTHER:PTHR12784;PANTHER:PTHR12784:SF6;MobiDB_lite:mobidb-lite', NULL, 'ENSG00000166833', NULL, NULL, False, NULL, '911820f0-d3ec-4d51-82a6-de0dae8d69a6', 'TCGA-B5-A0JY-10A-01D-A10O-09', NULL, 'C', NULL, '61935424-44d0-4211-81c1-c925e436eac5', 159, NULL, '1672/7467', 'muse;mutect2;varscan2', NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 19933847, 67, NULL, NULL, NULL, NULL, NULL, 'ENST00000396087', 'CAAAAAAGTCC', 'Transcript', 'protein_coding', 'missense_variant', '5', NULL, 'K/Q', 'HGNC', NULL, NULL, 'HGNC:15997', NULL, 'COSM925854', NULL, 'Missense_Mutation', NULL, NULL, NULL, 'Q8IVL1-1', NULL, 78, 'TCGA-B5-A0JY-10A', 'COSV62318420', 'Unknown', 'TCGA-UCEC', NULL, NULL, 'TCGA-B5-A0JY-01A', NULL, NULL, NULL, NULL, 'NAV2', 'missense_variant', 'ccebab6c-dffb-431e-9bce-bdd0c824ebf4', 'SNP', NULL, 'NM_001244963.2', NULL, NULL, NULL, 91, NULL, 'C', 'Aag/Cag', NULL, NULL, 'No', NULL, NULL, 'Somatic'), (NULL, NULL, 'PCDHAC2,missense_variant,p.V660L,ENST00000289269,NM_018899.6,c.1978G>T,MODERATE,YES,deleterious(0.02),possibly_damaging(0.644),1;PCDHAC2,missense_variant,p.V660L,ENST00000615316,NM_031883.2,c.1978G>T,MODERATE,,deleterious(0.04),possibly_damaging(0.646),1;PCDHAC1,intron_variant,,ENST00000253807,NM_018898.5,c.2434-10205G>T,MODIFIER,YES,,,1;PCDHA13,intron_variant,,ENST00000289272,NM_018904.3,c.2395-10205G>T,MODIFIER,YES,,,1;PCDHA10,intron_variant,,ENST00000307360,NM_018901.4,c.2389-10205G>T,MODIFIER,YES,,,1;PCDHA1,intron_variant,,ENST00000394633,NM_031411.3,c.1603-10205G>T,MODIFIER,,,,1;PCDHA12,intron_variant,,ENST00000398631,NM_018903.4,c.2368-10205G>T,MODIFIER,YES,,,1;PCDHA11,intron_variant,,ENST00000398640,NM_018902.5,c.2392-10205G>T,MODIFIER,YES,,,1;PCDHA13,intron_variant,,ENST00000409494,,c.2395-10205G>T,MODIFIER,,,,1;PCDHA1,intron_variant,,ENST00000504120,NM_018900.4,c.2395-10205G>T,MODIFIER,YES,,,1;PCDHA10,intron_variant,,ENST00000506939,NM_031860.3,c.1600-10205G>T,MODIFIER,,,,1;PCDHA4,intron_variant,,ENST00000512229,,c.2386-10205G>T,MODIFIER,,,,1;PCDHA3,intron_variant,,ENST00000522353,NM_018906.3,c.2395-10205G>T,MODIFIER,YES,,,1;PCDHA7,intron_variant,,ENST00000525929,NM_018910.3,c.2356-10205G>T,MODIFIER,YES,,,1;PCDHA2,intron_variant,,ENST00000526136,NM_018905.3,c.2389-10205G>T,MODIFIER,YES,,,1;PCDHA6,intron_variant,,ENST00000527624,NM_031849.3,c.1603-10205G>T,MODIFIER,,,,1;PCDHA6,intron_variant,,ENST00000529310,NM_018909.4,c.2395-10205G>T,MODIFIER,YES,,,1;PCDHA5,intron_variant,,ENST00000529619,,c.2353-10205G>T,MODIFIER,,,,1;PCDHA5,intron_variant,,ENST00000529859,NM_018908.3,c.2353-10205G>T,MODIFIER,YES,,,1;PCDHA4,intron_variant,,ENST00000530339,NM_018907.4,c.2386-10205G>T,MODIFIER,YES,,,1;PCDHA8,intron_variant,,ENST00000531613,NM_018911.3,c.2395-10205G>T,MODIFIER,YES,,,1;PCDHA9,intron_variant,,ENST00000532602,NM_031857.2,c.2395-10205G>T,MODIFIER,YES,,,1;PCDHA11,intron_variant,,ENST00000617408,,c.278-10205G>T,MODIFIER,,,,1;PCDHA10,intron_variant,,ENST00000673459,,c.*114-10205G>T,MODIFIER,,,,1;PCDHA12,intron_variant,,ENST00000673403,,c.2368-10205G>T,MODIFIER,,,,1;AC010223.1,upstream_gene_variant,,ENST00000625092,,,MODIFIER,YES,,,-1', 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