-- DBMS: bigquery
CREATE TABLE `isb-cgc.GDC_metadata.rel24_fileData_active`
(
  dbName STRING OPTIONS(description="Referring to the default/main database at the GDC. In this table, this field is always current."),
  file_gdc_id STRING OPTIONS(description="Unique GDC identifier for this file (corresponds to the file_barcode)  --  this can be used to access more information from the GDC data portal like this: https://portal.gdc.cancer.gov/files/c21b332c-06c6-4403-9032-f91c8f407ba4"),
  `access` STRING OPTIONS(description="Data accessibility policy (open or controlled)"),
  acl STRING OPTIONS(description="Access Control List -- if access is controlled, this field contains the dbGaP accession, eg phs000179"),
  analysis_input_file_gdc_ids STRING OPTIONS(description="GDC file UUIDs for input file(s)"),
  analysis_workflow_link STRING OPTIONS(description="Link to GDC workflow on github"),
  analysis_workflow_type STRING OPTIONS(description="Workflow name eg  STAR 2-Pass  "),
  archive_gdc_id STRING OPTIONS(description="GDC archive UUID"),
  archive_revision INT64 OPTIONS(description="Archive revision number"),
  archive_state STRING OPTIONS(description="Archive state"),
  archive_submitter_id STRING OPTIONS(description="Original archive submitter name, eg  nationwidechildrens.org_BRCA.bio.Level_1.56"),
  associated_entities__case_gdc_id STRING OPTIONS(description="GDC case uuid for associated case(s)"),
  associated_entities__entity_gdc_id STRING OPTIONS(description="GDC entity uuid for associated entity(ies)"),
  associated_entities__entity_submitter_id STRING OPTIONS(description="Submitter id for associated entity(ies)"),
  associated_entities__entity_type STRING OPTIONS(description="Associated entity type, eg   aliquot   or   case  "),
  case_gdc_id STRING OPTIONS(description="GDC unique identifier"),
  project_dbgap_accession_number STRING OPTIONS(description="Program dbGaP accession number, eg phs000188"),
  project_disease_type STRING OPTIONS(description="The type of disease studied by the project; eg. Sarcoma,  Breast Invasive Carcinoma,Acute Lymphoblastic Leukemia, etc"),
  project_name STRING OPTIONS(description="Project Name; frequently the same as or similar to the project disease type eg   Acute Lymphoblastic Leukemia - Phase II   or   Breast Invasive Carcinoma   etc"),
  program_dbgap_accession_number STRING OPTIONS(description="Program dbGaP accession number, eg phs000178"),
  program_name STRING OPTIONS(description="Program name, eg TCGA or TARGET"),
  project_short_name STRING OPTIONS(description="Project name abbreviation; the program name appended with a project name abbreviation; eg. TCGA-OV, etc."),
  created_datetime STRING OPTIONS(description="Timestamp of creation, eg 2016-10-27T21:58:12.297090-05:10"),
  data_category STRING OPTIONS(description="Category description of the underlying data, eg Clinical, Raw Sequencing Data, Simple Nucleotide Variation, Transcriptome Profiling  , etc"),
  data_format STRING OPTIONS(description="File format of the underlying data, eg BCR XML, BAM"),
  data_type STRING OPTIONS(description="Experimental source of the data type, eg Tissue slide image, RNA-Seq"),
  downstream_analyses__output_file_gdc_ids STRING OPTIONS(description="Semicolon-separated list of GDC file UUIDs"),
  downstream_analyses__workflow_link STRING OPTIONS(description="Name of GDC workflow, eg VarScan2 Annotation (if applicable, NULL where no information is available)"),
  downstream_analyses__workflow_type STRING OPTIONS(description="Name of GDC workflow, eg VarScan2 Annotation (if applicable, NULL where no information is available)"),
  experimental_strategy STRING OPTIONS(description="Experimental strategy used to generate data (where applicable) e.g. WXS, RNA-Seq"),
  file_name STRING OPTIONS(description="Name of file at the GDC"),
  file_size INT64 OPTIONS(description="The size of the file measured in bytes"),
  file_id STRING OPTIONS(description="GDC file identifier. This is a duplicate of file_gdc_id field found in some tables. "),
  index_file_gdc_id STRING OPTIONS(description="Where available, GDC file uuid for index file "),
  index_file_name STRING OPTIONS(description="Where available, GDC file name for index file "),
  index_file_size INT64 OPTIONS(description="Where available, size of the index file in bytes "),
  md5sum STRING OPTIONS(description="Md5sum for GDC data file"),
  platform STRING OPTIONS(description="Platform used to generate this data, eg  Illumina  , or  Affymetrix SNP 6.10"),
  file_state STRING OPTIONS(description="File state -- either live or submitted"),
  file_submitter_id STRING OPTIONS(description="Original submitter file id (eg CGHub analysis_id)"),
  file_type STRING OPTIONS(description="File Type  -- eg aligned_reads, simple_somatic_mutation, gene_expression, etc"),
  updated_datetime STRING OPTIONS(description="Timestamp of latest update, eg 2017-03-04T16:37:26.081298-06:00")
)
OPTIONS(
  friendly_name="FILE DATA ACTIVE REL24",
  description="Data was generated from file metadata information from the GDC active archive release 24, downloaded May 2020. \nMore details: https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-240\nThis table has been deprecated, please see isb-cgc-bq.GDC_case_file_metadata.fileData_active_current for the most current table.",
  labels=[("access", "open"), ("data_type", "file_metadata"), ("source", "gdc"), ("status", "deprecated"), ("category", "metadata")]
);

INSERT INTO `isb-cgc.GDC_metadata.rel24_fileData_active` (dbName, file_gdc_id, access, acl, analysis_input_file_gdc_ids, analysis_workflow_link, analysis_workflow_type, archive_gdc_id, archive_revision, archive_state, archive_submitter_id, associated_entities__case_gdc_id, associated_entities__entity_gdc_id, associated_entities__entity_submitter_id, associated_entities__entity_type, case_gdc_id, project_dbgap_accession_number, project_disease_type, project_name, program_dbgap_accession_number, program_name, project_short_name, created_datetime, data_category, data_format, data_type, downstream_analyses__output_file_gdc_ids, downstream_analyses__workflow_link, downstream_analyses__workflow_type, experimental_strategy, file_name, file_size, file_id, index_file_gdc_id, index_file_name, index_file_size, md5sum, platform, file_state, file_submitter_id, file_type, updated_datetime) VALUES ('active', 'a80b4622-3b38-4395-915a-9850ed8de659', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'multi', 'multi', 'multi', 'case', 'multi', 'phs001179', NULL, 'Foundation Medicine Adult Cancer Clinical Dataset (FM-AD)', NULL, 'FM', 'FM-AD', '2018-10-25T12:28:33.672509-05:00', 'Clinical', 'TSV', 'Clinical Supplement', NULL, NULL, NULL, NULL, 'FM-AD_Clinical.Breast.tsv', 859456, 'a80b4622-3b38-4395-915a-9850ed8de659', NULL, NULL, NULL, 'e0461a3115256052ee6daf7d78a20467', NULL, 'released', 'FM-AD_Clinical.Breast', 'clinical_supplement', '2019-09-18T22:25:13.124579+00:00'), ('active', '3b2d07af-c1eb-44f3-8680-9f79857214ed', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'multi', 'multi', 'multi', 'case', 'multi', 'phs001179', NULL, 'Foundation Medicine Adult Cancer Clinical Dataset (FM-AD)', NULL, 'FM', 'FM-AD', '2018-10-25T12:53:26.945714-05:00', 'Clinical', 'TSV', 'Clinical Supplement', NULL, NULL, NULL, NULL, 'FM-AD_Clinical.Other_And_Unspecified_Urinary_Organs.tsv', 5441, '3b2d07af-c1eb-44f3-8680-9f79857214ed', NULL, NULL, NULL, '1a8740eb4ed6b87b5965f6fa99a0dc48', NULL, 'released', 'FM-AD_Clinical.Other_And_Unspecified_Urinary_Organs', 'clinical_supplement', '2019-09-18T22:25:13.124579+00:00'), ('active', '778e0fd8-5273-4ea2-a884-7670b286f97f', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'multi', 'multi', 'multi', 'case', 'multi', 'phs001179', NULL, 'Foundation Medicine Adult Cancer Clinical Dataset (FM-AD)', NULL, 'FM', 'FM-AD', '2018-10-25T12:28:09.962237-05:00', 'Clinical', 'TSV', 'Clinical Supplement', NULL, NULL, NULL, NULL, 'FM-AD_Clinical.Adrenal_Gland.tsv', 21761, '778e0fd8-5273-4ea2-a884-7670b286f97f', NULL, NULL, NULL, '4250c31f212fc39c0cacdca9a14e12c2', NULL, 'released', 'FM-AD_Clinical.Adrenal_Gland', 'clinical_supplement', '2019-09-18T22:25:13.124579+00:00'), ('active', '299201c3-c664-4925-a58c-f9fb64f3ff9e', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'multi', 'multi', 'multi', 'case', 'multi', 'phs001179', NULL, 'Foundation Medicine Adult Cancer Clinical Dataset (FM-AD)', NULL, 'FM', 'FM-AD', '2018-10-25T12:51:20.393014-05:00', 'Clinical', 'TSV', 'Clinical Supplement', NULL, NULL, NULL, NULL, 'FM-AD_Clinical.Eye_And_Adnexa.tsv', 11030, '299201c3-c664-4925-a58c-f9fb64f3ff9e', NULL, NULL, NULL, 'f0cd6e3294380162f7691269bf9539ec', NULL, 'released', 'FM-AD_Clinical.Eye_And_Adnexa', 'clinical_supplement', '2019-09-18T22:25:13.124579+00:00'), ('active', '7820a666-0803-4992-b26f-6e655cd91534', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'multi', 'multi', 'multi', 'case', 'multi', 'phs001179', NULL, 'Foundation Medicine Adult Cancer Clinical Dataset (FM-AD)', NULL, 'FM', 'FM-AD', '2018-10-25T12:51:38.361575-05:00', 'Clinical', 'TSV', 'Clinical Supplement', NULL, NULL, NULL, NULL, 'FM-AD_Clinical.Kidney.tsv', 137177, '7820a666-0803-4992-b26f-6e655cd91534', NULL, NULL, NULL, '9cf2aa9fa1119b6c48d7eceabc8203f9', NULL, 'released', 'FM-AD_Clinical.Kidney', 'clinical_supplement', '2019-09-18T22:25:13.124579+00:00');