-- DBMS: bigquery
CREATE TABLE `isb-cgc-bq.HTAN_versioned.accessory_manifest_r5`
(
  Data_Type STRING OPTIONS(description="Types of data associated with the content. Fill out Other Data Type Specified, if not on the list."),
  HTAN_Parent_Biospecimen_ID STRING OPTIONS(description="HTAN Biospecimen Identifier (eg HTANx_yyy_zzz) indicating the biospecimen(s) from which these files were derived; multiple parent biospecimen should be comma-separated"),
  HTAN_Center_ID STRING OPTIONS(description="List of HTAN Center ID(s) associated with the content presented/published."),
  Accessory_Description STRING OPTIONS(description="Free text field containing description of accessory file(s)"),
  Id STRING OPTIONS(description="Unique identifier of entity e.g. a96059eb-81af-4b24-ae50-9242c0d8f819"),
  Accessory_associated_HTAN_Parent_Data_File_ID STRING OPTIONS(description="HTAN Data File Identifier(s) of the files associated with the accessory content. Should be comma-separated lists."),
  Component STRING OPTIONS(description="Category of metadata (e.g. Diagnosis, Biospecimen, scRNA-seq Level 1, etc.); provide the same one for all items/rows."),
  Accessory_Synapse_ID STRING OPTIONS(description="Synapse ID of folder containing accessory files"),
  Dataset_Name STRING OPTIONS(description="Name of a dataset (e.g. a Synapse folder)"),
  HTAN_Center STRING OPTIONS(description="Name of HTAN Center e.g. HTAN HTAPP"),
  Manifest_Id STRING OPTIONS(description="Synapse ID of manifest containing file annotation"),
  Manifest_Version INT64 OPTIONS(description="Latest version of metadata manifest"),
  entityId STRING OPTIONS(description="Synapse ID of entity"),
  Data_Release STRING OPTIONS(description="Inclusion in HTAN Data Release e.g. Release 1.0")
)
OPTIONS(
  friendly_name="HTAN ACCESSORY FOLDER METADATA R5 VERSIONED",
  description="This table contains the metadata for Synapse folders containing HTAN Accessory files. Data was extracted from HTAN Synapse projects in April 2024 and corresponds to HTAN Data Release 5.1. More details: see https://data.humantumoratlas.org/standards",
  labels=[("access", "open"), ("data_type", "file_metadata"), ("program", "htan"), ("source", "htan"), ("category", "metadata"), ("status", "current")]
);

INSERT INTO `isb-cgc-bq.HTAN_versioned.accessory_manifest_r5` (Data_Type, HTAN_Parent_Biospecimen_ID, HTAN_Center_ID, Accessory_Description, Id, Accessory_associated_HTAN_Parent_Data_File_ID, Component, Accessory_Synapse_ID, Dataset_Name, HTAN_Center, Manifest_Id, Manifest_Version, entityId, Data_Release) VALUES ('CODEX', 'HTA1_213_6752303,HTA1_213_6752303,HTA1_213_6752303,HTA1_313_932303,HTA1_313_932303,HTA1_313_932303,HTA1_330_1082309,HTA1_330_1082309,HTA1_330_1082309,HTA1_364_1321303,HTA1_364_1321303,HTA1_364_1321303,HTA1_514_6760308,HTA1_514_6760308,HTA1_514_6760308,HTA1_783_4081303,HTA1_783_4081303,HTA1_783_4081303,HTA1_812_8239308,HTA1_812_8239308,HTA1_812_8239308,HTA1_853_4381303,HTA1_853_4381303,HTA1_853_4381303,HTA1_878_7149309,HTA1_878_7149309,HTA1_878_7149309,HTA1_880_7179308,HTA1_880_7179308,HTA1_880_7179308,HTA1_917_4531308,HTA1_917_4531308,HTA1_917_4531308,HTA1_982_7629308,HTA1_982_7629308,HTA1_982_7629308,HTA1_997_7789303,HTA1_997_7789303,HTA1_997_7789303,HTA1_514_6760308,HTA1_812_8239308,HTA1_878_7149309,HTA1_982_7629308,HTA1_997_7789303,HTA1_213_6752303,HTA1_313_932303,HTA1_330_1082309,HTA1_364_1321303,HTA1_783_4081303,HTA1_853_4381303,HTA1_880_7179308,HTA1_917_4531308', 'HTA1', 'Auxiliary files for the CODEX experiment', 'eae659c7-4b37-4cd9-a560-fee1a1250d8f', NULL, 'AccessoryManifest', 'syn25556417', 'codex_auxiliary_files', 'HTAN HTAPP', 'syn57432617', 2, 'syn25556417', 'Release 5.1'), ('CODEX', 'HTA1_213_6752303,HTA1_213_6752303,HTA1_213_6752303,HTA1_313_932303,HTA1_313_932303,HTA1_313_932303,HTA1_330_1082309,HTA1_330_1082309,HTA1_330_1082309,HTA1_364_1321303,HTA1_364_1321303,HTA1_364_1321303,HTA1_514_6760308,HTA1_514_6760308,HTA1_514_6760308,HTA1_783_4081303,HTA1_783_4081303,HTA1_783_4081303,HTA1_812_8239308,HTA1_812_8239308,HTA1_812_8239308,HTA1_853_4381303,HTA1_853_4381303,HTA1_853_4381303,HTA1_878_7149309,HTA1_878_7149309,HTA1_878_7149309,HTA1_880_7179308,HTA1_880_7179308,HTA1_880_7179308,HTA1_917_4531308,HTA1_917_4531308,HTA1_917_4531308,HTA1_982_7629308,HTA1_982_7629308,HTA1_982_7629308,HTA1_997_7789303,HTA1_997_7789303,HTA1_997_7789303,HTA1_514_6760308,HTA1_812_8239308,HTA1_878_7149309,HTA1_982_7629308,HTA1_997_7789303,HTA1_213_6752303,HTA1_313_932303,HTA1_330_1082309,HTA1_364_1321303,HTA1_783_4081303,HTA1_853_4381303,HTA1_880_7179308,HTA1_917_4531308', 'HTA1', 'Auxiliary files for the CODEX experiment', 'b01c747b-9574-496a-843c-d552c33bb98b', NULL, 'AccessoryManifest', 'syn25843156', 'codex_auxiliary_files_neuroblastoma', 'HTAN HTAPP', 'syn57432651', 2, 'syn25843156', 'Release 5.1'), ('MERFISH', 'HTA1_313_932304, HTA1_514_6760309, HTA1_812_8239304, HTA1_853_4381304, HTA1_878_7149310, HTA1_880_7179309, HTA1_917_4531309, HTA1_982_7629304, HTA1_944_7479603, HTA1_944_7479604, HTA1_944_7479605, HTA1_982_7629309', 'HTA1', 'HTAPP MERFISH Auxiliary Files', 'b5f2d38c-7dcb-449a-9fef-f50d6501c5d5', 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'AccessoryManifest', 'syn25485809', 'merfish_auxiliary_files', 'HTAN HTAPP', 'syn54063809', 6, 'syn25485809', 'Release 5.1'), ('MIBI', 'HTA1_853_43814013,HTA1_853_43814014,HTA1_225_45604011,HTA1_225_45604012,HTA1_225_45604013,HTA1_225_45604014,HTA1_225_45604015,HTA1_519_40804011,HTA1_519_40804012,HTA1_519_40804013,HTA1_519_40804014,HTA1_519_40804015,HTA1_519_67624011,HTA1_519_67624012,HTA1_519_67624013,HTA1_519_67624014,HTA1_519_67624015,HTA1_516_41004011,HTA1_516_41004012,HTA1_516_41004013,HTA1_516_41004014,HTA1_516_41004015,HTA1_516_41004016,HTA1_516_67614011,HTA1_313_9324011,HTA1_313_9324012,HTA1_364_13214012,HTA1_364_13214013,HTA1_254_5714011,HTA1_254_5714012,HTA1_254_5714013,HTA1_254_5714014,HTA1_254_5714015,HTA1_254_5714016,HTA1_330_10824011,HTA1_330_10824012,HTA1_330_10824013,HTA1_330_10824014,HTA1_514_67604011,HTA1_514_67604012,HTA1_514_67604013,HTA1_997_77894011,HTA1_997_77894012,HTA1_997_77894013,HTA1_997_77894014,HTA1_997_77894015,HTA1_880_71794013,HTA1_880_71794014,HTA1_880_71794015,HTA1_917_45314011,HTA1_917_45314012,HTA1_917_45314013,HTA1_917_45314014,HTA1_917_45314015,HTA1_880_71804011,HTA1_880_71804012,HTA1_880_71804013,HTA1_880_71804014,HTA1_880_71804015,HTA1_982_76294011,HTA1_982_76294012,HTA1_982_76294013,HTA1_890_73004014,HTA1_890_73004015,HTA1_870_70904011,HTA1_870_70904012,HTA1_870_70904013,HTA1_870_70904014,HTA1_562_25814011,HTA1_562_25814012,HTA1_562_25814013,HTA1_562_25814014,HTA1_562_26034011,HTA1_562_26034012,HTA1_562_26034013,HTA1_562_26034014,HTA1_562_26034015,HTA1_752_40514011,HTA1_752_40514012,HTA1_752_40514013,HTA1_752_40514014,HTA1_783_40814011,HTA1_783_40814012,HTA1_783_40814013', 'HTA1', 'Contains the csv panel files which indicate the channel names and antibodies used to generate the channel; the pptx slides files contain the H&E images and MIBI specialized slides pictures to inidcate the exact location of acqusition over tissue sections; the xlsx spreadsheet contain the paramters used for data extraction and processing from the raw files plust per FOV evaluation of the image quality', '37dcdad1-9886-4f40-9221-e8a5d1dbc925', 'HTA1_853_43814013,HTA1_853_43814014,HTA1_225_45604011,HTA1_225_45604012,HTA1_225_45604013,HTA1_225_45604014,HTA1_225_45604015,HTA1_519_40804011,HTA1_519_40804012,HTA1_519_40804013,HTA1_519_40804014,HTA1_519_40804015,HTA1_519_67624011,HTA1_519_67624012,HTA1_519_67624013,HTA1_519_67624014,HTA1_519_67624015,HTA1_516_41004011,HTA1_516_41004012,HTA1_516_41004013,HTA1_516_41004014,HTA1_516_41004015,HTA1_516_41004016,HTA1_516_67614011,HTA1_313_9324011,HTA1_313_9324012,HTA1_364_13214012,HTA1_364_13214013,HTA1_254_5714011,HTA1_254_5714012,HTA1_254_5714013,HTA1_254_5714014,HTA1_254_5714015,HTA1_254_5714016,HTA1_330_10824011,HTA1_330_10824012,HTA1_330_10824013,HTA1_330_10824014,HTA1_514_67604011,HTA1_514_67604012,HTA1_514_67604013,HTA1_997_77894011,HTA1_997_77894012,HTA1_997_77894013,HTA1_997_77894014,HTA1_997_77894015,HTA1_880_71794013,HTA1_880_71794014,HTA1_880_71794015,HTA1_917_45314011,HTA1_917_45314012,HTA1_917_45314013,HTA1_917_45314014,HTA1_917_45314015,HTA1_880_71804011,HTA1_880_71804012,HTA1_880_71804013,HTA1_880_71804014,HTA1_880_71804015,HTA1_982_76294011,HTA1_982_76294012,HTA1_982_76294013,HTA1_890_73004014,HTA1_890_73004015,HTA1_870_70904011,HTA1_870_70904012,HTA1_870_70904013,HTA1_870_70904014,HTA1_562_25814011,HTA1_562_25814012,HTA1_562_25814013,HTA1_562_25814014,HTA1_562_26034011,HTA1_562_26034012,HTA1_562_26034013,HTA1_562_26034014,HTA1_562_26034015,HTA1_752_40514011,HTA1_752_40514012,HTA1_752_40514013,HTA1_752_40514014,HTA1_783_40814011,HTA1_783_40814012,HTA1_783_40814013, HTA1_102_114011,HTA1_102_114012,HTA1_102_114013,HTA1_116_314011,HTA1_116_314012,HTA1_116_314013,HTA1_120_414011,HTA1_120_414012,HTA1_120_414013,HTA1_125_714011,HTA1_125_714012,HTA1_125_714013,HTA1_130_914011,HTA1_130_914012,HTA1_130_914013,HTA1_136_1024011,HTA1_136_1024012,HTA1_136_1024013,HTA1_141_1114011,HTA1_141_1114012,HTA1_141_1114013,HTA1_148_1414011,HTA1_148_1414012,HTA1_148_1414013,HTA1_204_66014011,HTA1_204_66014012,HTA1_204_66014013,HTA1_656_34814011,HTA1_656_34814012,HTA1_656_34814013,HTA1_672_85094011,HTA1_672_85094012,HTA1_672_85094013', 'AccessoryManifest', 'syn25544054', 'mibi_auxiliary_files', 'HTAN HTAPP', 'syn54063809', 6, 'syn25544054', 'Release 5.1');