-- DBMS: bigquery
CREATE TABLE `isb-cgc.GDC_metadata.rel18_fileData_active`
(
  dbName STRING OPTIONS(description="Referring to the default/main database at the GDC. In this table, this field is always current."),
  file_gdc_id STRING OPTIONS(description="Unique GDC identifier for this file (corresponds to the file_barcode)  --  this can be used to access more information from the GDC data portal like this: https://portal.gdc.cancer.gov/files/c21b332c-06c6-4403-9032-f91c8f407ba4"),
  `access` STRING OPTIONS(description="Data accessibility policy (open or controlled)"),
  acl STRING OPTIONS(description="Access Control List -- if access is controlled, this field contains the dbGaP accession, eg phs000179"),
  analysis_input_file_gdc_ids STRING OPTIONS(description="GDC file UUIDs for input file(s)"),
  analysis_workflow_link STRING OPTIONS(description="Link to GDC workflow on github"),
  analysis_workflow_type STRING OPTIONS(description="Workflow name eg  STAR 2-Pass  "),
  archive_gdc_id STRING OPTIONS(description="GDC archive UUID"),
  archive_revision INT64 OPTIONS(description="Archive revision number"),
  archive_state STRING OPTIONS(description="Archive state"),
  archive_submitter_id STRING OPTIONS(description="Original archive submitter name, eg  nationwidechildrens.org_BRCA.bio.Level_1.56"),
  associated_entities__case_gdc_id STRING OPTIONS(description="GDC case uuid for associated case(s)"),
  associated_entities__entity_gdc_id STRING OPTIONS(description="GDC entity uuid for associated entity(ies)"),
  associated_entities__entity_submitter_id STRING OPTIONS(description="Submitter id for associated entity(ies)"),
  associated_entities__entity_type STRING OPTIONS(description="Associated entity type, eg   aliquot   or   case  "),
  case_gdc_id STRING OPTIONS(description="GDC unique identifier"),
  project_dbgap_accession_number STRING OPTIONS(description="Program dbGaP accession number, eg phs000188"),
  project_disease_type STRING OPTIONS(description="The type of disease studied by the project; eg. Sarcoma,  Breast Invasive Carcinoma,Acute Lymphoblastic Leukemia, etc"),
  project_name STRING OPTIONS(description="Project Name; frequently the same as or similar to the project disease type eg   Acute Lymphoblastic Leukemia - Phase II   or   Breast Invasive Carcinoma   etc"),
  program_dbgap_accession_number STRING OPTIONS(description="Program dbGaP accession number, eg phs000178"),
  program_name STRING OPTIONS(description="Program name, eg TCGA or TARGET"),
  project_short_name STRING OPTIONS(description="Project name abbreviation; the program name appended with a project name abbreviation; eg. TCGA-OV, etc."),
  created_datetime STRING OPTIONS(description="Timestamp of creation, eg 2016-10-27T21:58:12.297090-05:10"),
  data_category STRING OPTIONS(description="Category description of the underlying data, eg Clinical, Raw Sequencing Data, Simple Nucleotide Variation, Transcriptome Profiling  , etc"),
  data_format STRING OPTIONS(description="File format of the underlying data, eg BCR XML, BAM"),
  data_type STRING OPTIONS(description="Experimental source of the data type, eg Tissue slide image, RNA-Seq"),
  downstream_analyses__output_file_gdc_ids STRING OPTIONS(description="Semicolon-separated list of GDC file UUIDs"),
  downstream_analyses__workflow_link STRING OPTIONS(description="Name of GDC workflow, eg VarScan2 Annotation (if applicable, NULL where no information is available)"),
  downstream_analyses__workflow_type STRING OPTIONS(description="Name of GDC workflow, eg VarScan2 Annotation (if applicable, NULL where no information is available)"),
  experimental_strategy STRING OPTIONS(description="Experimental strategy used to generate data (where applicable) e.g. WXS, RNA-Seq"),
  file_name STRING OPTIONS(description="Name of file at the GDC"),
  file_size INT64 OPTIONS(description="The size of the file measured in bytes"),
  file_id STRING OPTIONS(description="GDC file identifier. This is a duplicate of file_gdc_id field found in some tables. "),
  index_file_gdc_id STRING OPTIONS(description="Where available, GDC file uuid for index file "),
  index_file_name STRING OPTIONS(description="Where available, GDC file name for index file "),
  index_file_size INT64 OPTIONS(description="Where available, size of the index file in bytes "),
  md5sum STRING OPTIONS(description="Md5sum for GDC data file"),
  platform STRING OPTIONS(description="Platform used to generate this data, eg  Illumina  , or  Affymetrix SNP 6.10"),
  file_state STRING OPTIONS(description="File state -- either live or submitted"),
  file_submitter_id STRING OPTIONS(description="Original submitter file id (eg CGHub analysis_id)"),
  file_type STRING OPTIONS(description="File Type  -- eg aligned_reads, simple_somatic_mutation, gene_expression, etc"),
  updated_datetime STRING OPTIONS(description="Timestamp of latest update, eg 2017-03-04T16:37:26.081298-06:00")
)
OPTIONS(
  friendly_name="FILE DATA ACTIVE REL18",
  description="Data was generated from file metadata information from the GDC active archive release 18, downloaded July 12, 2019. \nMore details: https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-180",
  labels=[("access", "open"), ("data_type", "file_metadata"), ("source", "gdc"), ("reference_genome_0", "hg38"), ("status", "archived"), ("category", "metadata")]
);

INSERT INTO `isb-cgc.GDC_metadata.rel18_fileData_active` (dbName, file_gdc_id, access, acl, analysis_input_file_gdc_ids, analysis_workflow_link, analysis_workflow_type, archive_gdc_id, archive_revision, archive_state, archive_submitter_id, associated_entities__case_gdc_id, associated_entities__entity_gdc_id, associated_entities__entity_submitter_id, associated_entities__entity_type, case_gdc_id, project_dbgap_accession_number, project_disease_type, project_name, program_dbgap_accession_number, program_name, project_short_name, created_datetime, data_category, data_format, data_type, downstream_analyses__output_file_gdc_ids, downstream_analyses__workflow_link, downstream_analyses__workflow_type, experimental_strategy, file_name, file_size, file_id, index_file_gdc_id, index_file_name, index_file_size, md5sum, platform, file_state, file_submitter_id, file_type, updated_datetime) VALUES ('active', 'b0f5ee1c-2e21-40a6-b335-9aae0b7f4e9f', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'ebc460c2-df88-4dc0-a2c0-aca8072b75ad', 'a5a0ea68-b7ce-4a1e-a161-64785d585c60', 'TCGA-AN-A0AR-01A-01-BSA', 'slide', 'ebc460c2-df88-4dc0-a2c0-aca8072b75ad', NULL, 'Breast Invasive Carcinoma', 'Breast Invasive Carcinoma', 'phs000178', 'TCGA', 'TCGA-BRCA', '2018-02-23T14:05:58.356965-06:00', 'Biospecimen', 'SVS', 'Slide Image', NULL, NULL, NULL, 'Tissue Slide', 'TCGA-AN-A0AR-01A-01-BSA.a5a0ea68-b7ce-4a1e-a161-64785d585c60.svs', 507810985, 'b0f5ee1c-2e21-40a6-b335-9aae0b7f4e9f', NULL, NULL, NULL, '3c7f4d999c8bb62ccdd54dc6cb9f4ce0', NULL, 'released', 'TCGA-AN-A0AR-01A-01-BSA_slide_image', 'slide_image', '2019-05-17T23:21:18.237724+00:00'), ('active', 'b97f0a1f-5867-44c0-ac30-b50f8632ede3', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, '37242f5a-25ae-4b1f-9ce6-09ce1dc92539', 'ceda7977-d676-40a2-8f5a-98aa2870d4fe', 'TCGA-E2-A15L-11A-01-TSA', 'slide', '37242f5a-25ae-4b1f-9ce6-09ce1dc92539', NULL, 'Breast Invasive Carcinoma', 'Breast Invasive Carcinoma', 'phs000178', 'TCGA', 'TCGA-BRCA', '2018-02-23T14:05:58.356965-06:00', 'Biospecimen', 'SVS', 'Slide Image', NULL, NULL, NULL, 'Tissue Slide', 'TCGA-E2-A15L-11A-01-TSA.ceda7977-d676-40a2-8f5a-98aa2870d4fe.svs', 74726193, 'b97f0a1f-5867-44c0-ac30-b50f8632ede3', NULL, NULL, NULL, 'f55ada634495ff0ba120e6ea35357528', NULL, 'released', 'TCGA-E2-A15L-11A-01-TSA_slide_image', 'slide_image', '2019-05-17T23:21:18.237724+00:00'), ('active', '2d9b6d17-3c98-488f-aebc-19e472b06362', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, '97862b8e-9f76-4b19-a865-156a9c00fb1e', 'ce729044-526a-43d5-bf00-8a0d393e1fab', 'TCGA-EW-A6SC-01A-01-TS1', 'slide', '97862b8e-9f76-4b19-a865-156a9c00fb1e', NULL, 'Breast Invasive Carcinoma', 'Breast Invasive Carcinoma', 'phs000178', 'TCGA', 'TCGA-BRCA', '2018-02-23T14:05:58.356965-06:00', 'Biospecimen', 'SVS', 'Slide Image', NULL, NULL, NULL, 'Tissue Slide', 'TCGA-EW-A6SC-01A-01-TS1.CE729044-526A-43D5-BF00-8A0D393E1FAB.svs', 128492771, '2d9b6d17-3c98-488f-aebc-19e472b06362', NULL, NULL, NULL, 'ed26e620d81c6d853a9ba4cb232abff3', NULL, 'released', 'TCGA-EW-A6SC-01A-01-TS1_slide_image', 'slide_image', '2019-05-17T23:21:18.237724+00:00'), ('active', '3c6d4c94-b8fa-4460-918d-24927ea19ce0', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, 'cf0e7e4e-b857-4db5-9ae2-551a899f77be', '93b120d1-e962-4dcd-b4ce-c2d8e019c8e0', 'TCGA-AN-A0XP-01A-01-BSA', 'slide', 'cf0e7e4e-b857-4db5-9ae2-551a899f77be', NULL, 'Breast Invasive Carcinoma', 'Breast Invasive Carcinoma', 'phs000178', 'TCGA', 'TCGA-BRCA', '2018-02-23T14:05:58.356965-06:00', 'Biospecimen', 'SVS', 'Slide Image', NULL, NULL, NULL, 'Tissue Slide', 'TCGA-AN-A0XP-01A-01-BSA.93b120d1-e962-4dcd-b4ce-c2d8e019c8e0.svs', 134455247, '3c6d4c94-b8fa-4460-918d-24927ea19ce0', NULL, NULL, NULL, '95000c44e30988cafa42a06b6f22f072', NULL, 'released', 'TCGA-AN-A0XP-01A-01-BSA_slide_image', 'slide_image', '2019-05-17T23:21:18.237724+00:00'), ('active', '70e9ca17-a138-4361-9d8f-26a49bc3f037', 'open', 'open', NULL, NULL, NULL, NULL, NULL, NULL, NULL, '0772cdbe-8b0d-452b-8df1-bd70d1306363', '010d7af0-073a-48aa-a257-10583b33c6f7', 'TCGA-BH-A0W4-01A-01-BSA', 'slide', '0772cdbe-8b0d-452b-8df1-bd70d1306363', NULL, 'Breast Invasive Carcinoma', 'Breast Invasive Carcinoma', 'phs000178', 'TCGA', 'TCGA-BRCA', '2018-02-23T14:05:58.356965-06:00', 'Biospecimen', 'SVS', 'Slide Image', NULL, NULL, NULL, 'Tissue Slide', 'TCGA-BH-A0W4-01A-01-BSA.010d7af0-073a-48aa-a257-10583b33c6f7.svs', 160392113, '70e9ca17-a138-4361-9d8f-26a49bc3f037', NULL, NULL, NULL, '5dfa480f7c6b0d2acc2c2fe07641eab7', NULL, 'released', 'TCGA-BH-A0W4-01A-01-BSA_slide_image', 'slide_image', '2019-05-17T23:21:18.237724+00:00');