nils-herrmann/clean_scirepeval huggingface dataset:
Model Agnostic Contrastive Explanations for Structured Data

Recently, a method [7] was proposed to generate contrastive explanations for differentiable models such as deep neural networks, where one has complete access to the model. In this work, we propose a method, Model Agnostic Contrastive Explanations Method (MACEM), to generate contrastive explanations for \emph{any} classification model where one is able to \emph{only} query the class probabilities for a desired input. This allows us to generate contrastive explanations for not only neural networks, but models such as random forests, boosted trees and even arbitrary ensembles that are still amongst the state-of-the-art when learning on structured data [13]. Moreover, to obtain meaningful explanations we propose a principled approach to handle real and categorical features leading to novel formulations for computing pertinent positives and negatives that form the essence of a contrastive explanation. A detailed treatment of the different data types of this nature was not performed in the previous work, which assumed all features to be positive real valued with zero being indicative of the least interesting value. We part with this strong implicit assumption and generalize these methods so as to be applicable across a much wider range of problem settings. We quantitatively and qualitatively validate our approach over 5 public datasets covering diverse domains.
Consensus Clustering: An Embedding Perspective, Extension and Beyond

Consensus clustering fuses diverse basic partitions (i.e., clustering results obtained from conventional clustering methods) into an integrated one, which has attracted increasing attention in both academic and industrial areas due to its robust and effective performance. Tremendous research efforts have been made to thrive this domain in terms of algorithms and applications. Although there are some survey papers to summarize the existing literature, they neglect to explore the underlying connection among different categories. Differently, in this paper we aim to provide an embedding prospective to illustrate the consensus mechanism, which transfers categorical basic partitions to other representations (e.g., binary coding, spectral embedding, etc) for the clustering purpose. To this end, we not only unify two major categories of consensus clustering, but also build an intuitive connection between consensus clustering and graph embedding. Moreover, we elaborate several extensions of classical consensus clustering from different settings and problems. Beyond this, we demonstrate how to leverage consensus clustering to address other tasks, such as constrained clustering, domain adaptation, feature selection, and outlier detection. Finally, we conclude this survey with future work in terms of interpretability, learnability and theoretical analysis.
Multi-objective Bayesian Optimization using Pareto-frontier Entropy

This paper studies an entropy-based multi-objective Bayesian optimization (MBO). The entropy search is successful approach to Bayesian optimization. However, for MBO, existing entropy-based methods ignore trade-off among objectives or introduce unreliable approximations. We propose a novel entropy-based MBO called Pareto-frontier entropy search (PFES) by considering the entropy of Pareto-frontier, which is an essential notion of the optimality of the multi-objective problem. Our entropy can incorporate the trade-off relation of the optimal values, and further, we derive an analytical formula without introducing additional approximations or simplifications to the standard entropy search setting. We also show that our entropy computation is practically feasible by using a recursive decomposition technique which has been known in studies of the Pareto hyper-volume computation. Besides the usual MBO setting, in which all the objectives are simultaneously observed, we also consider the "decoupled" setting, in which the objective functions can be observed separately. PFES can easily adapt to the decoupled setting by considering the entropy of the marginal density for each output dimension. This approach incorporates dependency among objectives conditioned on Pareto-frontier, which is ignored by the existing method. Our numerical experiments show effectiveness of PFES through several benchmark datasets.
Achieving Fairness in Determining Medicaid Eligibility through Fairgroup Construction

Effective complements to human judgment, artificial intelligence techniques have started to aid human decisions in complicated social problems across the world. In the context of United States for instance, automated ML/DL classification models offer complements to human decisions in determining Medicaid eligibility. However, given the limitations in ML/DL model design, these algorithms may fail to leverage various factors for decision making, resulting in improper decisions that allocate resources to individuals who may not be in the most need. In view of such an issue, we propose in this paper the method of \textit{fairgroup construction}, based on the legal doctrine of \textit{disparate impact}, to improve the fairness of regressive classifiers. Experiments on American Community Survey dataset demonstrate that our method could be easily adapted to a variety of regressive classification models to boost their fairness in deciding Medicaid Eligibility, while maintaining high levels of classification accuracy.
Decision-Making in Reinforcement Learning

In this research work, probabilistic decision-making approaches are studied, e.g. Bayesian and Boltzmann strategies, along with various deterministic exploration strategies, e.g. greedy, epsilon-Greedy and random approaches. In this research work, a comparative study has been done between probabilistic and deterministic decision-making approaches, the experiments are performed in OpenAI gym environment, solving Cart Pole problem. This research work discusses about the Bayesian approach to decision-making in deep reinforcement learning, and about dropout, how it can reduce the computational cost. All the exploration approaches are compared. It also discusses about the importance of exploration in deep reinforcement learning, and how improving exploration strategies may help in science and technology. This research work shows how probabilistic decision-making approaches are better in the long run as compared to the deterministic approaches. When there is uncertainty, Bayesian dropout approach proved to be better than all other approaches in this research work.
Knowledge Hypergraphs: Extending Knowledge Graphs Beyond Binary Relations

Knowledge graphs store facts using relations between two entities. In this work, we address the question of link prediction in knowledge hypergraphs where relations are defined on any number of entities. While techniques exist (such as reification) that convert non-binary relations into binary ones, we show that current embedding-based methods for knowledge graph completion do not work well out of the box for knowledge graphs obtained through these techniques. To overcome this, we introduce HSimplE and HypE, two embedding-based methods that work directly with knowledge hypergraphs. In both models, the prediction is a function of the relation embedding, the entity embeddings and their corresponding positions in the relation. We also develop public datasets, benchmarks and baselines for hypergraph prediction and show experimentally that the proposed models are more effective than the baselines.
Promotion of Answer Value Measurement With Domain Effects in Community Question Answering Systems

In the area of community question answering (CQA), answer selection and answer ranking are two tasks which are applied to help users quickly access valuable answers. Existing solutions mainly exploit the syntactic or semantic correlation between a question and its related answers (Q&A), where the multifacet domain effects in CQA are still underexplored. In this paper, we propose a unified model, enhanced attentive recurrent neural network (EARNN), for both answer selection and answer ranking tasks by taking full advantages of both Q&A semantics and multifacet domain effects (i.e., topic effects and timeliness). Specifically, we develop a serialized long short-term memory to learn the unified representations of Q&A, where two attention mechanisms at either sentence level or word level are designed for capturing the deep effects of topics. Meanwhile, the emphasis of Q&A can be automatically distinguished. Furthermore, we design a time-sensitive ranking function to model the timeliness in CQA. To effectively train EARNN, a question-dependent pairwise learning strategy is also developed. Finally, we conduct extensive experiments on a real-world dataset from Quora. Experimental results validate the effectiveness and interpretability of our proposed EARNN model.
Temporally Coherent Full 3D Mesh Human Pose Recovery from Monocular Video

Advances in Deep Learning have recently made it possible to recover full 3D meshes of human poses from individual images. However, extension of this notion to videos for recovering temporally coherent poses still remains unexplored. A major challenge in this regard is the lack of appropriately annotated video data for learning the desired deep models. Existing human pose datasets only provide 2D or 3D skeleton joint annotations, whereas the datasets are also recorded in constrained environments. We first contribute a technique to synthesize monocular action videos with rich 3D annotations that are suitable for learning computational models for full mesh 3D human pose recovery. Compared to the existing methods which simply "texture-map" clothes onto the 3D human pose models, our approach incorporates Physics based realistic cloth deformations with the human body movements. The generated videos cover a large variety of human actions, poses, and visual appearances, whereas the annotations record accurate human pose dynamics and human body surface information. Our second major contribution is an end-to-end trainable Recurrent Neural Network for full pose mesh recovery from monocular video. Using the proposed video data and LSTM based recurrent structure, our network explicitly learns to model the temporal coherence in videos and imposes geometric consistency over the recovered meshes. We establish the effectiveness of the proposed model with quantitative and qualitative analysis using the proposed and benchmark datasets.
Automated Machine Learning with Monte-Carlo Tree Search (Extended Version)

The AutoML approach aims to deliver peak performance from a machine learning  portfolio on the dataset at hand. A Monte-Carlo Tree Search Algorithm Selection and Configuration (Mosaic) approach is presented to tackle this mixed (combinatorial and continuous) expensive optimization problem on the structured search space of ML pipelines. Extensive lesion studies are conducted to independently assess and compare: i) the optimization processes based on Bayesian Optimization or Monte Carlo Tree Search (MCTS); ii) its warm-start initialization based on meta-features or random runs; iii) the ensembling of the solutions gathered along the search. Mosaic is assessed on the OpenML 100 benchmark and the Scikit-learn portfolio, with statistically significant gains over AutoSkLearn, winner of all former AutoML challenges.
Equivariant Grothendieck–Riemann–Roch theorem via formal deformation theory

We use the formalism of traces in higher categories to prove a common generalization of the holomorphic Atiyah-Bott fixed point formula and the Grothendieck-Riemann-Roch theorem. The proof is quite different from the original one proposed by Grothendieck et al.: it relies on the interplay between self dualities of quasiand indcoherent sheaves on X and formal deformation theory of Gaitsgory-Rozenblyum. In particular, we give a description of the Todd class in terms of the difference of two formal group structures on the derived loop scheme LX. The equivariant case is reduced to the non-equivariant one by a variant of the Atiyah-Bott localization theorem.
Dark Matter Search in Missing Energy Events with NA64.

A search for sub-GeV dark matter production mediated by a new vector boson A^{'}, called a dark photon, is performed by the NA64 experiment in missing energy events from 100 GeV electron interactions in an active beam dump at the CERN SPS. From the analysis of the data collected in the years 2016, 2017, and 2018 with 2.84×10^{11} electrons on target no evidence of such a process has been found. The most stringent constraints on the A^{'} mixing strength with photons and the parameter space for the scalar and fermionic dark matter in the mass range ≲0.2  GeV are derived, thus demonstrating the power of the active beam dump approach for the dark matter search.
Enriching Ontology-based Data Access with Provenance (Extended Version)

Ontology-based data access (OBDA) is a popular paradigm for querying heterogeneous data sources by connecting them through mappings to an ontology. In OBDA, it is often difficult to reconstruct why a tuple occurs in the answer of a query. We address this challenge by enriching OBDA with provenance semirings, taking inspiration from database theory. In particular, we investigate the problems of (i) deciding whether a provenance annotated OBDA instance entails a provenance annotated conjunctive query, and (ii) computing a polynomial representing the provenance of a query entailed by a provenance annotated OBDA instance. Differently from pure databases, in our case these polynomials may be infinite. To regain finiteness, we consider idempotent semirings, and study the complexity in the case of DL-Lite ontologies. We implement Task (ii) in a state-of-the-art OBDA system and show the practical feasibility of the approach through an extensive evaluation against two popular benchmarks.
Siamese recurrent networks learn first-order logic reasoning and exhibit zero-shot compositional generalization

Can neural nets learn logic? We approach this classic question with current methods, and demonstrate that recurrent neural networks can learn to recognize first order logical entailment relations between expressions. We define an artificial language in first-order predicate logic, generate a large dataset of sample 'sentences', and use an automatic theorem prover to infer the relation between random pairs of such sentences. We describe a Siamese neural architecture trained to predict the logical relation, and experiment with recurrent and recursive networks. Siamese Recurrent Networks are surprisingly successful at the entailment recognition task, reaching near perfect performance on novel sentences (consisting of known words), and even outperforming recursive networks. We report a series of experiments to test the ability of the models to perform compositional generalization. In particular, we study how they deal with sentences of unseen length, and sentences containing unseen words. We show that set-ups using LSTMs and GRUs obtain high scores on these tests, demonstrating a form of compositionality.
Learning to Transfer: Unsupervised Meta Domain Translation

Unsupervised domain translation has recently achieved impressive performance with Generative Adversarial Network (GAN) and sufficient (unpaired) training data. However, existing domain translation frameworks form in a disposable way where the learning experiences are ignored and the obtained model cannot be adapted to a new coming domain. In this work, we take on unsupervised domain translation problems from a meta-learning perspective. We propose a model called Meta-Translation GAN (MT-GAN) to find good initialization of translation models. In the meta-training procedure, MT-GAN is explicitly trained with a primary translation task and a synthesized dual translation task. A cycle-consistency meta-optimization objective is designed to ensure the generalization ability. We demonstrate effectiveness of our model on ten diverse two-domain translation tasks and multiple face identity translation tasks. We show that our proposed approach significantly outperforms the existing domain translation methods when each domain contains no more than ten training samples.
Are Anchor Points Really Indispensable in Label-Noise Learning?

In label-noise learning, \textit{noise transition matrix}, denoting the probabilities that clean labels flip into noisy labels, plays a central role in building \textit{statistically consistent classifiers}. Existing theories have shown that the transition matrix can be learned by exploiting \textit{anchor points} (i.e., data points that belong to a specific class almost surely). However, when there are no anchor points, the transition matrix will be poorly learned, and those current consistent classifiers will significantly degenerate. In this paper, without employing anchor points, we propose a \textit{transition-revision} ($T$-Revision) method to effectively learn transition matrices, leading to better classifiers. Specifically, to learn a transition matrix, we first initialize it by exploiting data points that are similar to anchor points, having high \textit{noisy class posterior probabilities}. Then, we modify the initialized matrix by adding a \textit{slack variable}, which can be learned and validated together with the classifier by using noisy data. Empirical results on benchmark-simulated and real-world label-noise datasets demonstrate that without using exact anchor points, the proposed method is superior to the state-of-the-art label-noise learning methods.
Perceptual Evaluation of Adversarial Attacks for CNN-based Image Classification

Deep neural networks (DNNs) have recently achieved state-of-the-art performance and provide significant progress in many machine learning tasks, such as image classification, speech processing, natural language processing, etc. However, recent studies have shown that DNNs are vulnerable to adversarial attacks. For instance, in the image classification domain, adding small imperceptible perturbations to the input image is sufficient to fool the DNN and to cause misclassification. The perturbed image, called adversarial example, should be visually as close as possible to the original image. However, all the works proposed in the literature for generating adversarial examples have used the Lp norms (L0, L2 and L∞) as distance metrics to quantify the similarity between the original image and the adversarial example. Nonetheless, the Lp norms do not correlate with human judgment, making them not suitable to reliably assess the perceptual similarity/fidelity of adversarial examples. In this paper, we present a database for visual fidelity assessment of adversarial examples. We describe the creation of the database and evaluate the performance of fifteen state-of-the-art full-reference (FR) image fidelity assessment metrics that could substitute Lp norms. The database as well as subjective scores are publicly available to help designing new metrics for adversarial examples and to facilitate future research
Robust Learning Under Label Noise With Iterative Noise-Filtering

We consider the problem of training a model under the presence of label noise. Current approaches identify samples with potentially incorrect labels and reduce their influence on the learning process by either assigning lower weights to them or completely removing them from the training set. In the first case the model however still learns from noisy labels; in the latter approach, good training data can be lost. In this paper, we propose an iterative semi-supervised mechanism for robust learning which excludes noisy labels but is still able to learn from the corresponding samples. To this end, we add an unsupervised loss term that also serves as a regularizer against the remaining label noise. We evaluate our approach on common classification tasks with different noise ratios. Our robust models outperform the state-of-the-art methods by a large margin. Especially for very large noise ratios, we achieve up to 20 % absolute improvement compared to the previous best model.
Lung cancer screening with low-dose CT scans using a deep learning approach

Lung cancer is the leading cause of cancer deaths. Early detection through low-dose computed tomography (CT) screening has been shown to significantly reduce mortality but suffers from a high false positive rate that leads to unnecessary diagnostic procedures. Quantitative image analysis coupled to deep learning techniques has the potential to reduce this false positive rate. We conducted a computational analysis of 1449 low-dose CT studies drawn from the National Lung Screening Trial (NLST) cohort. We applied to this cohort our newly developed algorithm, DeepScreener, which is based on a novel deep learning approach. The algorithm, after the training process using about 3000 CT studies, does not require lung nodule annotations to conduct cancer prediction. The algorithm uses consecutive slices and multi-task features to determine whether a nodule is likely to be cancer, and a spatial pyramid to detect nodules at different scales. We find that the algorithm can predict a patient's cancer status from a volumetric lung CT image with high accuracy (78.2%, with area under the Receiver Operating Characteristic curve (AUC) of 0.858). Our preliminary framework ranked 16th of 1972 teams (top 1%) in the Data Science Bowl 2017 (DSB2017) competition, based on the challenge datasets. We report here the application of DeepScreener on an independent NLST test set. This study indicates that the deep learning approach has the potential to significantly reduce the false positive rate in lung cancer screening with low-dose CT scans.
Natural Image Noise Dataset

Convolutional neural networks have been the focus of research aiming to solve image denoising problems, but their performance remains unsatisfactory for most applications. These networks are trained with synthetic noise distributions that do not accurately reflect the noise captured by image sensors. Some datasets of clean-noisy image pairs have been introduced but they are usually meant for benchmarking or specific applications. We introduce a dataset [NIND] of DSLR-like images with varying levels of ISO noise which is large enough to train models for blind denoising over a wide range of noise. We demonstrate a denoising model trained with the NIND and show that it significantly outperforms BM3D on ISO noise from unseen images, even when generalizing to images from a different type of camera. The Natural Image Noise Dataset is published on Wikimedia Commons such that it remains open for curation and contributions. We expect that this dataset will prove useful for future image denoising applications.
Learning to Generate Grounded Image Captions without Localization Supervision

When generating a sentence description for an image, it frequently remains unclear how well the generated caption is grounded in the image or if the model hallucinates based on priors in the dataset and/or the language model. The most common way of relating image regions with words in caption models is through an attention mechanism over the regions that is used as input to predict the next word. The model must therefore learn to predict the attention without knowing the word it should localize. In this work, we propose a novel cyclical training regimen that forces the model to localize each word in the image after the sentence decoder generates it and then reconstruct the sentence from the localized image region(s) to match the ground-truth. The initial decoder and the proposed reconstructor share parameters during training and are learned jointly with the localizer, allowing the model to regularize the attention mechanism. Our proposed framework only requires learning one extra fully-connected layer (the localizer), a layer that can be removed at test time. We show that our model significantly improves grounding accuracy without relying on grounding supervision or introducing extra computation during inference.