nils-herrmann/clean_scirepeval huggingface dataset:
Maximizing Kepler science return per telemetered pixel: Detailed models of the focal plane in the two-wheel era

Kepler's immense photometric precision to date was maintained through satellite stability and precise pointing. In this white paper, we argue that image modeling--fitting the Kepler-downlinked raw pixel data--can vastly improve the precision of Kepler in pointing-degraded two-wheel mode. We argue that a non-trivial modeling effort may permit continuance of photometry at 10-ppm-level precision. We demonstrate some baby steps towards precise models in both data-driven (flexible) and physics-driven (interpretably parameterized) modes. We demonstrate that the expected drift or jitter in positions in the two-weel era will help with constraining calibration parameters. In particular, we show that we can infer the device flat-field at higher than pixel resolution; that is, we can infer pixel-to-pixel variations in intra-pixel sensitivity. These results are relevant to almost any scientific goal for the repurposed mission; image modeling ought to be a part of any two-wheel repurpose for the satellite. We make other recommendations for Kepler operations, but fundamentally advocate that the project stick with its core mission of finding and characterizing Earth analogs.
Human Genome Variation and the Concept of Genotype Networks

Genotype networks are a concept used in systems biology to study sets of genotypes having the same phenotype, and the ability of these to bring forth novel phenotypes. In the past they have been applied to determine the genetic heterogeneity, and stability to mutations, of systems such as metabolic networks and RNA folds. Recently, they have been the base for reconciling the neutralist and selectionist views on evolution. Here, we adapted this concept to the study of population genetics data. Specifically, we applied genotype networks to the human 1000 genomes dataset, and analyzed networks composed of short haplotypes of Single Nucleotide Variants (SNV). The result is a scan of how properties related to genetic heterogeneity and stability to mutations are distributed along the human genome. We found that genes involved in acquired immunity, such as some HLA and MHC genes, tend to have the most heterogeneous and connected networks, and that coding regions tend to be more heterogeneous and stable to mutations than non-coding regions. We also found, using coalescent simulations, that regions under selection have more extended and connected networks. The application of the concept of genotype networks can provide a new opportunity to understand the evolutionary processes that shaped our genome. Learning how the genotype space of each region of our genome has been explored during the evolutionary history of the human species can lead to a better understanding on how selective pressures and neutral factors have shaped genetic diversity within populations and among individuals. Combined with the availability of larger datasets of sequencing data, genotype networks represent a new approach to the study of human genetic diversity that looks to the whole genome, and goes beyond the classical division between selection and neutrality methods.
MAGNETIC SHIELDING OF EXOMOONS BEYOND THE CIRCUMPLANETARY HABITABLE EDGE

With most planets and planetary candidates detected in the stellar habitable zone (HZ) being super-Earths and gas giants rather than Earth-like planets, we naturally wonder if their moons could be habitable. The first detection of such an exomoon has now become feasible, and due to observational biases it will be at least twice as massive as Mars. However, formation models predict that moons can hardly be as massive as Earth. Hence, a giant planet's magnetosphere could be the only possibility for such a moon to be shielded from cosmic and stellar high-energy radiation. Yet, the planetary radiation belt could also have detrimental effects on exomoon habitability. Here we synthesize models for the evolution of the magnetic environment of giant planets with thresholds from the runaway greenhouse (RG) effect to assess the habitability of exomoons. For modest eccentricities, we find that satellites around Neptune-sized planets in the center of the HZ around K dwarf stars will either be in an RG state and not be habitable, or they will be in wide orbits where they will not be affected by the planetary magnetosphere. Saturn-like planets have stronger fields, and Jupiter-like planets could coat close-in habitable moons soon after formation. Moons at distances between about 5 and 20 planetary radii from a giant planet can be habitable from an illumination and tidal heating point of view, but still the planetary magnetosphere would critically influence their habitability.
Black holes with massive graviton hair

No-hair theorems exclude the existence of nontrivial scalar and massive vector hair outside four-dimensional, static, asymptotically flat black-hole spacetimes. We show, by explicitly building nonlinear solutions, that black holes can support massive graviton hair in theories of massive gravity. These hairy solutions are, most likely, the generic end state of the recently discovered monopole instability of Schwarzschild black holes in massive graviton theories.
Nuclear binding energies from a BPS Skyrme model

Recently, within the space of generalized Skyrme models, a BPS submodel was identified which reproduces some bulk properties of nuclear matter already on a classical level and, as such, constitutes a promising field theory candidate for the detailed and reliable description of nuclei and hadrons. Here we extend and further develop these investigations by applying the model to the calculation of nuclear binding energies. Concretely, we calculate these binding energies by including the classical soliton energies, the excitation energies from the collective coordinate quantization of spin and isospin, the electrostatic Coulomb energies and a small explicit isospin symmetry breaking, which accounts for the mass difference between proton and neutron. The integrability properties of the BPS Skyrme model allow, in fact, for an analytical calculation of all contributions, which may then be compared with the semi-empirical mass formula. We find that for heavier nuclei, where the model is expected to be more accurate on theoretical grounds, the resulting binding energies are already in excellent agreement with their physical values. This result provides further strong evidence for the viability of the BPS Skyrme model as a distinguished starting point and lowest order approximation for the detailed quantitative investigation of nuclear and hadron physics.
Signatures of Dark Matter Scattering Inelastically Off Nuclei

Direct dark matter detection focuses on elastic scattering of dark matter particles off nuclei. In this study, we explore inelastic scattering where the nucleus is excited to a low-lying state of 10-100 keV, with subsequent prompt de-excitation. We calculate the inelastic structure factors for the odd-mass xenon isotopes based on state-of-the-art large-scale shell-model calculations with chiral effective field theory WIMP-nucleon currents. For these cases, we find that the inelastic channel is comparable to or can dominate the elastic channel for momentum transfers around 150 MeV. We calculate the inelastic recoil spectra in the standard halo model, compare these to the elastic case, and discuss the expected signatures in a xenon detector, along with implications for existing and future experiments. The combined information from elastic and inelastic scattering will allow to determine the dominant interaction channel within one experiment. In addition, the two channels probe different regions of the dark matter velocity distribution and can provide insight into the dark halo structure. The allowed recoil energy domain and the recoil energy at which the integrated inelastic rates start to dominate the elastic channel depend on the mass of the dark matter particle, thus providing a potential handle to constrain its mass.
Comment on Coherent Electron Cooling

An interesting method proposed in  coheren t electron cooling (CEC) of ion beams in a storage ring of the Large Hadron Collider (LHC). The authors est ima ed that theirs method, in contrast to the other  traditional methods of cooling, is an efficient coo ling procedure for the proton beam at high energy. As the subject of beam cooling is important for practi cal applications, we decided to compare the method described in  with the one described earlier in . In the method proposed in , a uniform cylind rical electron and ion beams pass along the modulat ory section with the same speed. Heavy ions attract the electrons so that at the exit of the modulator sec tion, the electron beam has enhanced charge density aroun d each ion. Sequentially, the electron beam is sepa rated from the ion one and enters the undulator, wh ere each region with its high charge density emits a coherent undulator radiation (CUR). Emitted along t he beam axis, CUR, passing through the front part o f the moving beam, modulates its density and, in turn , this density modulation radiates a CUR superimposed on the previously emitted wave. In this case CUR becomes amplified as well as the density modulation of electron beam. This section is essentiall y free-electron laser (FEL) in a mode of self-amp lified stimulated emission (SASE). As a result, at the out put of the FEL in the direction of its axis CUR has the form of a wave packet (wavelet) with length min , 1 λ K and the electron beam density modulation at the
Pluto's Atmosphere Does Not Collapse

Combining stellar occultation observations probing Pluto's atmosphere from 1988 to 2013 and models of energy balance between Pluto's surface and atmosphere, we conclude that Pluto's atmosphere does not collapse at any point in its 248-year orbit. The occultation results show an increasing atmospheric pressure with time in the current epoch, a trend present only in models with a high thermal inertia and a permanent N2 ice cap at Pluto's north rotational pole.
Just in Time to Flip Your Classroom.

With advocates like Sal Khan and Bill Gates,1 flipped classrooms are attracting an increasing amount of media and research attention.2 We had heard Khan's TED talk and were aware of the concept of inverted pedagogies in general. Yet it really hit home when we accidentally flipped our classroom. Our objective was to better prepare our students for class. We set out to effectively move some of our course content outside of class and decided to tweak the Just-in-Time Teaching approach (JiTT).3 To our surprise, this tweak—which we like to call the flip-JiTT—ended up completely flipping our classroom. What follows is narrative of our experience and a procedure that any teacher can use to extend JiTT to a flipped classroom.
Shortest Paths in Microseconds

Computing shortest paths is a fundamental primitive for several social network applications including socially-sensitive ranking, location-aware search, social auctions and social network privacy. Since these applications compute paths in response to a user query, the goal is to minimize latency while maintaining feasible memory requirements. We present ASAP, a system that achieves this goal by exploiting the structure of social networks. 
ASAP preprocesses a given network to compute and store a partial shortest path tree (PSPT) for each node. The PSPTs have the property that for any two nodes, each edge along the shortest path is with high probability contained in the PSPT of at least one of the nodes. We show that the structure of social networks enable the PSPT of each node to be an extremely small fraction of the entire network; hence, PSPTs can be stored efficiently and each shortest path can be computed extremely quickly. 
For a real network with 5 million nodes and 69 million edges, ASAP computes a shortest path for most node pairs in less than 49 microseconds per pair. ASAP, unlike any previous technique, also computes hundreds of paths (along with corresponding distances) between any node pair in less than 100 microseconds. Finally, ASAP admits efficient implementation on distributed programming frameworks like MapReduce.
Cluster SIMS Microscope Mode Mass Spectrometry Imaging

Microscope mode imaging for secondary ion mass spectrometry is a technique with the promise of simultaneous high spatial resolution and high speed imaging of biomolecules from complex surfaces. Technological developments such as new position-sensitive detectors, in combination with polyatomic primary ion sources, are required to exploit the full potential of microscope mode mass spectrometry imaging, i.e. to efficiently push the limits of ultra-high spatial resolution, sample throughput and sensitivity. In this work, a C60 primary source is combined with a commercial mass microscope for microscope mode secondary ion mass spectrometry imaging. The detector setup is a pixelated detector from the Medipix/Timepix family with high-voltage post-acceleration capabilities. The mass spectral and imaging performance of the system is tested with various benchmark samples and thin tissue sections. We show that the high secondary ion yield (with respect to traditional monatomic primary ion sources) of the C60 primary ion source and the increased sensitivity of the high voltage detector setup improve microscope mode secondary ion mass spectrometry imaging. The analysis time and the signal-to-noise ratio are improved compared to other microscope mode imaging systems, all at high spatial resolution. We have demonstrated the unique capabilities of a C60 ion microscope with a Timepix detector for high spatial resolution microscope mode secondary ion mass spectrometry imaging.
Pervasive liquid metal based direct writing electronics with roller-ball pen

A roller-ball pen enabled direct writing electronics via room temperature liquid metal ink was proposed. With the rolling to print mechanism, the metallic inks were smoothly written on flexible polymer substrate to form conductive tracks and electronic devices. The contact angle analyzer and scanning electron microscope were implemented to disclose several unique inner properties of the obtained electronics. An ever high writing resolution with line width and thickness as 200 μm and 80 μm, respectively was realized. Further, with the administration of external writing pressure, GaIn24.5 droplets embody increasing wettability on polymer which demonstrates the pervasive adaptability of the roller-ball pen electronics.
Calibration of RAVE distances to a large sample of Hipparcos stars

A magnitude limited population of 18 808 Hipparcos stars is used to calibrate distances for 52 794 RAVE stars, including dwarfs, giants, and pre-main sequence stars. I give treatments for a number of types of bias affecting calculation, including bias from the non-linear relationship between the quantity of interest (e.g., distance or distance modulus) and the measured quantity (parallax or visual magnitude), the Lutz-Kelker bias, and bias due to variation in density of the stellar population. The use of a magnitude bound minimises the Malmquist and the Lutz-Kelker bias, and avoids a measurement bias resulting from the greater accuracy of Hipparcos parallaxes for brighter stars. The calibration is applicable to stars in 2MASS when there is some way to determine stellar class with reasonable confidence. For RAVE this is possible for hot dwarfs and using $\log g $. The accuracy of the calibration is tested against Hipparcos stars with better than 2% parallax errors, and by comparison of the RAVE velocity distribution with that of Hipparcos, and is found to improve upon previous estimates of luminosity distance. An estimate of the LSR from RAVE data, (U_{0}, V_{0}, W_{0}) = (14.9 \pm 1.7, 15.3 \pm 0.4, 6.9 \pm 0.1) km\,s^{-1} shows excellent agreement with the current best estimate from XHIP. The RAVE velocity distribution confirms the alignment of stellar motions with spiral structure.
Interferometry with relativistic electrons

We propose an experiment to test the influence of Lorentz contraction on the interference pattern of a beam of electrons. The electron beam is split and recombined by two pairs of bi-chromatic laser pulses, using a variation of the Kapitza-Dirac effect. Between the pairs the electrons are accelerated to relativistic speed. We show that Lorentz contraction of the distance between two partial beams will then lead to a reduction of fringe visibility. The connection of the proposal to Bell's spaceship paradox is discussed.
A quasi-periodic oscillation in the blazar J1359+4011

The Owens Valley Radio Observatory 40-m telescope has been monitoring the 15-GHz radio flux density of over 1200 blazars since 2008. The 15-GHz light curve of the flat spectrum radio quasar J1359+4011 shows a strong and persistent quasi-periodic oscillation. The time-scale of the oscillation varies between 120 and 150 d over an ∼4 year time span. We interpret this as the active galactic nucleus mass-scaled analogue of low-frequency quasi-periodic oscillations from Galactic microquasars or as evidence of modulation of the accretion flow by thermal instabilities in the ‘inner’ accretion disc.
Molecular quantum magnetism in LiZn2Mo3O8.

Inelastic neutron scattering at low temperatures T≤30  K from a powder of LiZn2Mo3O8 demonstrates this triangular-lattice antiferromagnet hosts collective magnetic excitations from spin-1/2 Mo3O13 molecules. Apparently gapless (Δ<0.2  meV) and extending at least up to 2.5 meV, the low-energy magnetic scattering cross section is surprisingly broad in momentum space and involves one-third of the spins present above 100 K. The data are compatible with the presence of valence bonds involving nearest-neighbor and next-nearest-neighbor spins forming a disordered or dynamic state.
An on-chip diamond optical parametric oscillator

Efficient, on-chip optical nonlinear processes are of great interest for the development of compact, robust, low-power consuming systems for applications in spectroscopy, metrology, sensing and classical and quantum optical information processing. Diamond holds promise for these applications, owing to its exceptional properties. However, although significant progress has been made in the development of an integrated diamond photonics platform, optical nonlinearities in diamond have not been explored much apart from Raman processes in bulk samples. Here, we demonstrate optical parametric oscillations (OPO) via four wave mixing (FWM) in single crystal diamond (SCD) optical networks on-chip consisting of waveguide-coupled microring resonators. Threshold powers as low as 20mW are enabled by ultra-high quality factor (1*10^6) diamond ring resonators operating at telecom wavelengths, and up to 20 new wavelengths are generated from a single-frequency pump laser. We also report the inferred nonlinear refractive index due to the third-order nonlinearity in diamond at telecom wavelengths.
Collider signatures of low scale supersymmetry breaking: A Snowmass 2013 White Paper

We consider the possibility that supersymmetry is broken at a low scale, within one order of magnitude above the TeV scale. In such a case, the degrees of freedom associated with the spontaneous breaking of supersymmetry, the goldstino fermion and its scalar superpartner (the sgoldstino), can have significant interactions with the Standard Model particles and their superpartners. We discuss some characteristic processes, involving the goldstino and the sgoldstino, and the collider signatures they give rise to. These signatures involve scalar resonances in the di-photon, di-jet, di-boson and di-tau channels, the possible relation between these resonances and deviations in the Higgs couplings as well as exotic Higgs decays in the monophoton+MET and the four photon channels.
Highly efficient coupling from an optical fiber to a nanoscale silicon optomechanical cavity

We demonstrate highly efficient coupling of light from an optical fiber to a silicon photonic crystal optomechanical cavity. The fiber-to-cavity coupling utilizes a compact (L ≈ 25 μm) intermediate adiabatic coupler. The optical coupling is lithographically controlled, broadband, relatively insensitive to fiber misalignment and allows for light to be transferred from an optical fiber to, in principle, any photonic chip with refractive index greater than that of the optical fiber. Here we demonstrate single-sided cavity coupling with a total fiber-to-cavity optical power coupling efficiency of 85%.
Understanding shape entropy through local dense packing

Many natural systems are structured by the ordering of repeated, distinct shapes. Understanding how this happens is difficult because shape affects structure in two ways. One is how the shape of a cell or nanoparticle, for example, affects its surface, chemical, or other intrinsic properties. The other is an emergent, entropic effect that arises from the geometry of the shape itself, which we term “shape entropy,” and is not well understood. In this paper, we determine how shape entropy affects structure. We quantify the mechanism and determine when shape entropy competes with intrinsic shape effects. Our results show that in a wide class of systems, shape affects bulk structure because crowded particles optimize their local packing. Entropy drives the phase behavior of colloids ranging from dense suspensions of hard spheres or rods to dilute suspensions of hard spheres and depletants. Entropic ordering of anisotropic shapes into complex crystals, liquid crystals, and even quasicrystals was demonstrated recently in computer simulations and experiments. The ordering of shapes appears to arise from the emergence of directional entropic forces (DEFs) that align neighboring particles, but these forces have been neither rigorously defined nor quantified in generic systems. Here, we show quantitatively that shape drives the phase behavior of systems of anisotropic particles upon crowding through DEFs. We define DEFs in generic systems and compute them for several hard particle systems. We show they are on the order of a few times the thermal energy (kBT) at the onset of ordering, placing DEFs on par with traditional depletion, van der Waals, and other intrinsic interactions. In experimental systems with these other interactions, we provide direct quantitative evidence that entropic effects of shape also contribute to self-assembly. We use DEFs to draw a distinction between self-assembly and packing behavior. We show that the mechanism that generates directional entropic forces is the maximization of entropy by optimizing local particle packing. We show that this mechanism occurs in a wide class of systems and we treat, in a unified way, the entropy-driven phase behavior of arbitrary shapes, incorporating the well-known works of Kirkwood, Onsager, and Asakura and Oosawa.
Curing Black Hole Singularities with Local Scale Invariance

We show that Weyl-invariant dilaton gravity provides a description of black holes without classical space-time singularities. Singularities appear due to the ill behaviour of gauge fixing conditions, one example being the gauge in which theory is classically equivalent to standard General Relativity. The main conclusions of our analysis are as follows: (1) singularities signal a phase transition from broken to unbroken phase of Weyl symmetry; (2) instead of a singularity, there is a “baby universe” or a white hole inside a black hole; (3) in the baby universe scenario, there is a critical mass after which reducing mass makes the black hole larger as viewed by outside observers; (4) if a black hole could be connected with white hole through the “singularity,” this would require breakdown of (classical) geometric description; (5) the singularity of Schwarzschild BH solution is nongeneric and so it is dangerous to rely on it in deriving general results. Our results may have important consequences for resolving issues related to information loss puzzle. Though quantum effects are still crucial and may change the proposed classical picture, a position of building quantum theory around essentially regular classical solutions normally provides a much better starting point.