nils-herrmann/clean_scirepeval huggingface dataset:
Characterizing the Use of Images by State-Sponsored Troll Accounts on Twitter

Anecdotal evidence has emerged suggesting that state-sponsored organizations, like the Russian Internet Research Agency, have exploited mainstream social. Their primary goal is apparently to conduct information warfare operations to manipulate public opinion using accounts disguised as "normal" people. To increase engagement and credibility of their posts, these accounts regularly share images. However, the use of images by state-sponsored accounts has yet to be examined by the research community. 
In this work, we address this gap by analyzing a ground truth dataset of 1.8M images posted to Twitter by called Russian trolls. More specifically, we analyze the content of the images, as well as the posting activity of the accounts. Among other things, we find that image posting activity of Russian trolls is tightly coupled with real-world events, and that their targets, as well as the content shared, changed over time. When looking at the interplay between domains that shared the same images as state-sponsored trolls, we find clear cut differences in the origin and/or spread of images across the Web. Overall, our findings provide new insight into how state-sponsored trolls operate, and specifically how they use imagery to achieve their goals.
Gromov-Wasserstein Learning for Graph Matching and Node Embedding

A novel Gromov-Wasserstein learning framework is proposed to jointly match (align) graphs and learn embedding vectors for the associated graph nodes. Using Gromov-Wasserstein discrepancy, we measure the dissimilarity between two graphs and find their correspondence, according to the learned optimal transport. The node embeddings associated with the two graphs are learned under the guidance of the optimal transport, the distance of which not only reflects the topological structure of each graph but also yields the correspondence across the graphs. These two learning steps are mutually-beneficial, and are unified here by minimizing the Gromov-Wasserstein discrepancy with structural regularizers. This framework leads to an optimization problem that is solved by a proximal point method. We apply the proposed method to matching problems in real-world networks, and demonstrate its superior performance compared to alternative approaches.
Instance-Level Microtubule Tracking

We propose a new method of instance-level microtubule (MT) tracking in time-lapse image series using recurrent attention. Our novel deep learning algorithm segments individual MTs at each frame. Segmentation results from successive frames are used to assign correspondences among MTs. This ultimately generates a distinct path trajectory for each MT through the frames. Based on these trajectories, we estimate MT velocities. To validate our proposed technique, we conduct experiments using real and simulated data. We use statistics derived from real time-lapse series of MT gliding assays to simulate realistic MT time-lapse image series in our simulated data. This data set is employed as pre-training and hyperparameter optimization for our network before training on the real data. Our experimental results show that the proposed supervised learning algorithm improves the precision for MT instance velocity estimation drastically to 71.3% from the baseline result (29.3%). We also demonstrate how the inclusion of temporal information into our deep network can reduce the false negative rates from 67.8% (baseline) down to 28.7% (proposed). Our findings in this work are expected to help biologists characterize the spatial arrangement of MTs, specifically the effects of MT-MT interactions.
FARSA: Fully Automated Roadway Safety Assessment

This paper addresses the task of road safety assessment. An emerging approach for conducting such assessments in the United States is through the US Road Assessment Program (usRAP), which rates roads from highest risk (1 star) to lowest (5 stars). Obtaining these ratings requires manual, fine-grained labeling of roadway features in streetlevel panoramas, a slow and costly process. We propose to automate this process using a deep convolutional neural network that directly estimates the star rating from a street-level panorama, requiring milliseconds per image at test time. Our network also estimates many other roadlevel attributes, including curvature, roadside hazards, and the type of median. To support this, we incorporate taskspecific attention layers so the network can focus on the panorama regions that are most useful for a particular task. We evaluated our approach on a large dataset of real-world images from two US states. We found that incorporating additional tasks, and using a semi-supervised training approach, significantly reduced overfitting problems, allowed us to optimize more layers of the network, and resulted in higher accuracy.
A Probabilistic Approach to Nonparametric Local Volatility

The local volatility model is a widely used for pricing and hedging financial derivatives. While its main appeal is its capability of reproducing any given surface of observed option prices---it provides a perfect fit---the essential component is a latent function which can be uniquely determined only in the limit of infinite data. To (re)construct this function, numerous calibration methods have been suggested involving steps of interpolation and extrapolation, most often of parametric form and with point-estimate representations. We look at the calibration problem in a probabilistic framework with a nonparametric approach based on a Gaussian process prior. This immediately gives a way of encoding prior beliefs about the local volatility function and a hypothesis model which is highly flexible yet not prone to over-fitting. Besides providing a method for calibrating a (range of) point-estimate(s), we draw posterior inference from the distribution over local volatility. This leads to a better understanding of uncertainty associated with the calibration in particular, and with the model in general. Further, we infer dynamical properties of local volatility by augmenting the hypothesis space with a time dimension. Ideally, this provides predictive distributions not only locally, but also for entire surfaces forward in time. We apply our approach to S&P 500 market data.
Path Spaces of Higher Inductive Types in Homotopy Type Theory

The study of equality types is central to homotopy type theory. Characterizing these types is often tricky, and various strategies, such as the encode-decode method, have been developed. We prove a theorem about equality types of coequalizers and pushouts, reminiscent of an induction principle and without any restrictions on the truncation levels. This result makes it possible to reason directly about certain equality types and to streamline existing proofs by eliminating the necessity of auxiliary constructions. To demonstrate this, we give a very short argument for the calculation of the fundamental group of the circle (Licata and Shulman ), and for the fact that pushouts preserve embed-dings. Further, our development suggests a higher version of the Seifert-van Kampen theorem, and the set-truncation operator maps it to the standard Seifert-van Kampen theorem (due to Favonia and Shulman ). We provide a formalization of the main technical results in the proof assistant Lean.
Learning a Generative Model of Cancer Metastasis

We introduce a Unified Disentanglement Network (UFDN) trained on The Cancer Genome Atlas (TCGA). We demonstrate that the UFDN learns a biologically relevant latent space of gene expression data by applying our network to two classification tasks of cancer status and cancer type. Our UFDN specific algorithms perform comparably to random forest methods. The UFDN allows for continuous, partial interpolation between distinct cancer types. Furthermore, we perform an analysis of differentially expressed genes between skin cutaneous melanoma(SKCM) samples and the same samples interpolated into glioblastoma (GBM). We demonstrate that our interpolations learn relevant metagenes that recapitulate known glioblastoma mechanisms and suggest possible starting points for investigations into the metastasis of SKCM into GBM.
Pancake making and surface coating: Optimal control of a gravity-driven liquid film

This paper investigates the flow of a solidifying liquid film on a solid surface subject to a complex kinematics, a process relevant to pancake making and surface coating. The flow is modeled using the lubrication approximation, with a gravity force whose magnitude and direction depend on the time-dependent orientation of the surface. Solidification is modeled with a temperature-dependent viscosity. Because the flow eventually ceases as the liquid film becomes very viscous, the key question this study aims to address is: what is the optimal surface kinematics for spreading the liquid layer uniformly? Two methods are proposed to tackle this problem. In the first one, the surface kinematics is assumed a priori to be harmonic and parameterized. The optimal parameters are inferred using the Monte-Carlo method. This ``brute-force'' approach leads to a moderate improvement of the film uniformity compared to the reference case when no motion is imposed to the surface. The second method is formulated as an optimal control problem, constrained by the governing partial differential equation, and solved with an adjoint equation. Key benefits of this method are that no assumption is made on the form of the control, and that significant improvement in thickness uniformity are achieved with a comparatively smaller number of evaluations of the objective function.
Good Similar Patches for Image Denoising

Patch-based denoising algorithms like BM3D have achieved outstanding performance. An important idea for the success of these methods is to exploit the recurrence of similar patches in an input image to estimate the underlying image structures. However, in these algorithms, the similar patches used for denoising are obtained via Nearest Neighbour Search (NNS) and are sometimes not optimal. First, due to the existence of noise, NNS can select similar patches with similar noise patterns to the reference patch. Second, the unreliable noisy pixels in digital images can bring a bias to the patch searching process and result in a loss of color fidelity in the final denoising result. We observe that given a set of good similar patches, their distribution is not necessarily centered at the noisy reference patch and can be approximated by a Gaussian component. Based on this observation, we present a patch searching method that clusters similar patch candidates into patch groups using Gaussian Mixture Model-based clustering, and selects the patch group that contains the reference patch as the final patches for denoising. We also use an unreliable pixel estimation algorithm to pre-process the input noisy images to further improve the patch searching. Our experiments show that our approach can better capture the underlying patch structures and can consistently enable the state-of-the-art patch-based denoising algorithms, such as BM3D, LPCA and PLOW, to better denoise images by providing them with patches found by our approach while without modifying these algorithms.
Learning Mutually Local-Global U-Nets For High-Resolution Retinal Lesion Segmentation In Fundus Images

Diabetic retinopathy is the most important complication of diabetes. Early diagnosis of retinal lesions helps to avoid visual loss or blindness. Due to high-resolution and small-size lesion regions, applying existing methods, such as U-Nets, to perform segmentation on fundus photography is very challenging. Although downsampling the input images could simplify the problem, it loses detailed information. Conducting patch-level analysis helps reaching fine-scale segmentation yet usually leads to misunderstanding as the lack of context information. In this paper, we propose an efficient network that combines them together, not only being aware of local details but also taking fully use of the context perceptions. This is implemented by integrating the decoder parts of a global-level U-net and a patch-level one. The two streams are jointly optimized, ensuring that they are enhanced mutually. Experimental results demonstrate our new framework significantly outperforms existing patch-based and global-based methods, especially when the lesion regions are scattered and small-scaled.
A Tail-Index Analysis of Stochastic Gradient Noise in Deep Neural Networks

The gradient noise (GN) in the stochastic gradient descent (SGD) algorithm is often considered to be Gaussian in the large data regime by assuming that the classical central limit theorem (CLT) kicks in. This assumption is often made for mathematical convenience, since it enables SGD to be analyzed as a stochastic differential equation (SDE) driven by a Brownian motion. We argue that the Gaussianity assumption might fail to hold in deep learning settings and hence render the Brownian motion-based analyses inappropriate. Inspired by non-Gaussian natural phenomena, we consider the GN in a more general context and invoke the generalized CLT (GCLT), which suggests that the GN converges to a heavy-tailed $\alpha$-stable random variable. Accordingly, we propose to analyze SGD as an SDE driven by a Levy motion. Such SDEs can incur `jumps', which force the SDE transition from narrow minima to wider minima, as proven by existing metastability theory. To validate the $\alpha$-stable assumption, we conduct extensive experiments on common deep learning architectures and show that in all settings, the GN is highly non-Gaussian and admits heavy-tails. We further investigate the tail behavior in varying network architectures and sizes, loss functions, and datasets. Our results open up a different perspective and shed more light on the belief that SGD prefers wide minima.
Kernel Change-point Detection with Auxiliary Deep Generative Models

Detecting the emergence of abrupt property changes in time series is a challenging problem. Kernel two-sample test has been studied for this task which makes fewer assumptions on the distributions than traditional parametric approaches. However, selecting kernels is non-trivial in practice. Although kernel selection for two-sample test has been studied, the insufficient samples in change point detection problem hinder the success of those developed kernel selection algorithms. In this paper, we propose KL-CPD, a novel kernel learning framework for time series CPD that optimizes a lower bound of test power via an auxiliary generative model. With deep kernel parameterization, KL-CPD endows kernel two-sample test with the data-driven kernel to detect different types of change-points in real-world applications. The proposed approach significantly outperformed other state-of-the-art methods in our comparative evaluation of benchmark datasets and simulation studies.
Accelerated Experimental Design for Pairwise Comparisons

Pairwise comparison labels are more informative and less variable than class labels, but generating them poses a challenge: their number grows quadratically in the dataset size. We study a natural experimental design objective, namely, D-optimality, that can be used to identify which $K$ pairwise comparisons to generate. This objective is known to perform well in practice, and is submodular, making the selection approximable via the greedy algorithm. A na\"ive greedy implementation has $O(N^2d^2K)$ complexity, where $N$ is the dataset size, $d$ is the feature space dimension, and $K$ is the number of generated comparisons. We show that, by exploiting the inherent geometry of the dataset--namely, that it consists of pairwise comparisons--the greedy algorithm's complexity can be reduced to $O(N^2(K+d)+N(dK+d^2) +d^2K).$ We apply the same acceleration also to the so-called lazy greedy algorithm. When combined, the above improvements lead to an execution time of less than 1 hour for a dataset with $10^8$ comparisons; the na\"ive greedy algorithm on the same dataset would require more than 10 days to terminate.
Probabilistic symmetry and invariant neural networks

In an effort to improve the performance of deep neural networks in data-scarce, non-i.i.d., or unsupervised settings, much recent research has been devoted to encoding invariance under symmetry transformations into neural network architectures. We treat the neural network input and output as random variables, and consider group invariance from the perspective of probabilistic symmetry. Drawing on tools from probability and statistics, we establish a link between functional and probabilistic symmetry, and obtain generative functional representations of joint and conditional probability distributions that are invariant or equivariant under the action of a compact group. Those representations completely characterize the structure of neural networks that can be used to model such distributions and yield a general program for constructing invariant stochastic or deterministic neural networks. We develop the details of the general program for exchangeable sequences and arrays, recovering a number of recent examples as special cases.
Theory of Minds: Understanding Behavior in Groups Through Inverse Planning

Human social behavior is structured by relationships. We form teams, groups, tribes, and alliances at all scales of human life. These structures guide multi-agent cooperation and competition, but when we observe others these underlying relationships are typically unobservable and hence must be inferred. Humans make these inferences intuitively and flexibly, often making rapid generalizations about the latent relationships that underlie behavior from just sparse and noisy observations. Rapid and accurate inferences are important for determining who to cooperate with, who to compete with, and how to cooperate in order to compete. Towards the goal of building machine-learning algorithms with human-like social intelligence, we develop a generative model of multiagent action understanding based on a novel representation for these latent relationships called Composable Team Hierarchies (CTH). This representation is grounded in the formalism of stochastic games and multi-agent reinforcement learning. We use CTH as a target for Bayesian inference yielding a new algorithm for understanding behavior in groups that can both infer hidden relationships as well as predict future actions for multiple agents interacting together. Our algorithm rapidly recovers an underlying causal model of how agents relate in spatial stochastic games from just a few observations. The patterns of inference made by this algorithm closely correspond with human judgments and the algorithm makes the same rapid generalizations that people do.
WALL-E: An Efficient Reinforcement Learning Research Framework

There are two halves to RL systems: experience collection time and policy learning time. For a large number of samples in rollouts, experience collection time is the major bottleneck. Thus, it is necessary to speed up the rollout generation time with multi-process architecture support. Our work, dubbed WALL-E, utilizes multiple rollout samplers running in parallel to rapidly generate experience. Due to our parallel samplers, we experience not only faster convergence times, but also higher average reward thresholds. For example, on the MuJoCo HalfCheetah-v2 task, with $N = 10$ parallel sampler processes, we are able to achieve much higher average return than those from using only a single process architecture.
CRDN: Cascaded Residual Dense Networks for Dynamic MR Imaging with Edge-enhanced Loss Constraint

Dynamic magnetic resonance (MR) imaging has generated great research interest, as it can provide both spatial and temporal information for clinical diagnosis. However, slow imaging speed or long scanning time is still one of the challenges for dynamic MR imaging. Most existing methods reconstruct Dynamic MR images from incomplete k-space data under the guidance of compressed sensing (CS) or low rank theory, which suffer from long iterative reconstruction time. Recently, deep learning has shown great potential in accelerating dynamic MR. Our previous work proposed a dynamic MR imaging method with both k-space and spatial prior knowledge integrated via multi-supervised network training. Nevertheless, there was still a certain degree of smooth in the reconstructed images at high acceleration factors. In this work, we propose cascaded residual dense networks for dynamic MR imaging with edge-enhance loss constraint, dubbed as CRDN. Specifically, the cascaded residual dense networks fully exploit the hierarchical features from all the convolutional layers with both local and global feature fusion. We further utilize the total variation (TV) loss function, which has the edge enhancement properties, for training the networks.
Fast High-Dimensional Kernel Filtering

The bilateral and nonlocal means filters are instances of kernel-based filters that are popularly used in image processing. It was recently shown that fast and accurate bilateral filtering of grayscale images can be performed using a low-rank approximation of the kernel matrix. More specifically, based on the eigendecomposition of the kernel matrix, the overall filtering was approximated using spatial convolutions, for which efficient algorithms are available. Unfortunately, this technique cannot be scaled to high-dimensional data such as color and hyperspectral images. This is simply because one needs to compute/store a large matrix and perform its eigendecomposition in this case. We show how this problem can be solved using the Nystr$\ddot{\text{o}}$m method, which is generally used for approximating the eigendecomposition of large matrices. The resulting algorithm can also be used for nonlocal means filtering. We demonstrate the effectiveness of our proposal for bilateral and nonlocal means filtering of color and hyperspectral images. In particular, our method is shown to be competitive with state-of-the-art fast algorithms, and moreover, it comes with a theoretical guarantee on the approximation error.
Cold-start playlist recommendation with multitask learning

Playlist recommendation involves producing a set of songs that a user might enjoy. We investigate this problem in three cold-start scenarios: (i) cold playlists, where we recommend songs to form new personalised playlists for an existing user; (ii) cold users, where we recommend songs to form new playlists for a new user; and (iii) cold songs, where we recommend newly released songs to extend users’ existing playlists. We propose a flexible multitask learning method to deal with all three settings. The method learns from user-curated playlists, and encourages songs in a playlist to be ranked higher than those that are not by minimising a bipartite ranking loss. Inspired by an equivalence between bipartite ranking and binary classification, we show how one can efficiently approximate an optimal solution of the multitask learning objective by minimising a classification loss. Empirical results on two real playlist datasets show the proposed approach has good performance for cold-start playlist recommendation.