nils-herrmann/clean_scirepeval huggingface dataset:
The urban stream syndrome: current knowledge and the search for a cure

The term ‘‘urban stream syndrome’’ describes the consistently observed ecological degradation of streams draining urban land. This paper reviews recent literature to describe symptoms of the syndrome, explores mechanisms driving the syndrome, and identifies appropriate goals and methods for ecological restoration of urban streams. Symptoms of the urban stream syndrome include a flashier hydrograph, elevated concentrations of nutrients and contaminants, altered channel morphology, and reduced biotic richness, with increased dominance of tolerant species. More research is needed before generalizations can be made about urban effects on stream ecosystem processes, but reduced nutrient uptake has been consistently reported. The mechanisms driving the syndrome are complex and interactive, but most impacts can be ascribed to a few major large-scale sources, primarily urban stormwater runoff delivered to streams by hydraulically efficient drainage systems. Other stressors, such as combined or sanitary sewer overflows, wastewater treatment plant effluents, and legacy pollutants (long-lived pollutants from earlier land uses) can obscure the effects of stormwater runoff. Most research on urban impacts to streams has concentrated on correlations between instream ecological metrics and total catchment imperviousness. Recent research shows that some of the variance in such relationships can be explained by the distance between the stream reach and urban land, or by the hydraulic efficiency of stormwater drainage. The mechanisms behind such patterns require experimentation at the catchment scale to identify the best management approaches to conservation and restoration of streams in urban catchments. Remediation of stormwater impacts is most likely to be achieved through widespread application of innovative approaches to drainage design. Because humans dominate urban ecosystems, research on urban stream ecology will require a broadening of stream ecological research to integrate with social, behavioral, and economic research.
Intelligence and brain size in 100 postmortem brains: sex, lateralization and age factors.

The neural basis of variation in human intelligence is not well delineated. Numerous studies relating measures of brain size such as brain weight, head circumference, CT or MRI brain volume to different intelligence test measures, with variously defined samples of subjects have yielded inconsistent findings with correlations from approximately 0 to 0.6, with most correlations approximately 0.3 or 0.4. The study of intelligence in relation to postmortem cerebral volume is not available to date. We report the results of such a study on 100 cases (58 women and 42 men) having prospectively obtained Full Scale Wechsler Adult Intelligence Scale scores. Ability correlated with cerebral volume, but the relationship depended on the realm of intelligence studied, as well as the sex and hemispheric functional lateralization of the subject. General verbal ability was positively correlated with cerebral volume and each hemisphere's volume in women and in right-handed men accounting for 36% of the variation in verbal intelligence. There was no evidence of such a relationship in non-right-handed men, indicating that at least for verbal intelligence, functional asymmetry may be a relevant factor in structure-function relationships in men, but not in women. In women, general visuospatial ability was also positively correlated with cerebral volume, but less strongly, accounting for approximately 10% of the variance. In men, there was a non-significant trend of a negative correlation between visuospatial ability and cerebral volume, suggesting that the neural substrate of visuospatial ability may differ between the sexes. Analyses of additional research subjects used as test cases provided support for our regression models. In men, visuospatial ability and cerebral volume were strongly linked via the factor of chronological age, suggesting that the well-documented decline in visuospatial intelligence with age is related, at least in right-handed men, to the decrease in cerebral volume with age. We found that cerebral volume decreased only minimally with age in women. This leaves unknown the neural substrate underlying the visuospatial decline with age in women. Body height was found to account for 1-4% of the variation in cerebral volume within each sex, leaving the basis of the well-documented sex difference in cerebral volume unaccounted for. With finer testing instruments of specific cognitive abilities and measures of their associated brain regions, it is likely that stronger structure-function relationships will be observed. Our results point to the need for responsibility in the consideration of the possible use of brain images as intelligence tests.
Abnormal quantitative EEG scores identify patients with complicated idiopathic generalised epilepsy

To investigate the relationship between quantitative EEG (QEEG) scores and "complicating factors" (psychopathology, true pharmacoresistance, neurological symptoms) in idiopathic generalised epilepsy (IGE).



35 newly referred, newly diagnosed, unmedicated IGE patients were collected in a prospective and random manner. Standard neuro-psychiatric and EEG examination was done. The patients were treated and controlled at regular visits. After 2 years of follow-up, clinical data were summarised and were compared to QEEG results. Clinical target items were neurologic and psychiatric abnormalities, proven pharmacoresistance. Patients with at least one of these items were labelled "complicated", whereas patients without these additional handicap were labelled as "uncomplicated". The 12 QEEG target variables were: Z-transformed absolute power values for three (anterior, central, posterior) brain regions and four frequency bands (1.5-3.5; 3.5-7.5; 7.5-12.5; 12.5-25.0 Hz). QEEG scores outside the +/- 2.5 Z range were accepted as abnormal. The overall QEEG result was classified as normal (0-2 abnormal scores), or pathological (3 or more abnormal scores). Clinical and QEEG results were correlated.



All patients with psychopathology showed 4-8 positive pathological scores (power excess not confined to a single cortical region or frequency band). The two patients with pure pharmacoresistance showed pathological negative values (delta power deficit) all over the scalp. Statistically significant (P < 0.001) association was found between patients with uncomplicated IGE and normal QEEG, and between complicated IGE and pathological QEEG. Patients with neurological items had normal QEEG.



Higher degree of cortical dysfunction (as assessed in the clinical setting) is reflected by higher degree of QEEG abnormalities. QEEG analysis can differentiate between IGE patients with or without psychopathology. Forecasting psychopathology may be the practical application of the findings.
Chlorhexidine gluconate bathing to reduce methicillin-resistant Staphylococcus aureus acquisition.

Methicillin-resistant Staphylococcus aureus (MRSA) is a virulent organism causing substantial morbidity and mortality in intensive care units. Chlorhexidine gluconate, a topical antiseptic solution, is effective against a wide spectrum of gram-positive and gram-negative bacteria, including MRSA.  To examine the impact of a bathing protocol using chlorhexidine gluconate and bath basin management on MRSA acquisition in 5 adult intensive care units and to examine the cost differences between chlorhexidine bathing by using the bath-basin method versus using prepackaged chlorhexidine-impregnated washcloths.



The protocol used a 4-oz bottle of 4% chlorhexidine gluconate soap in a bath basin of warm water. Patients in 3 intensive care units underwent active surveillance for MRSA acquisition; patients in 2 other units were monitored for a new positive culture for MRSA at any site 48 hours after admission.



Before the protocol, 132 patients acquired MRSA in 34333 patient days (rate ratio, 3.84). Afterwards, 109 patients acquired MRSA in 41376 patient days (rate ratio, 2.63). The rate ratio difference is 1.46 (95% CI, 1.12-1.90; P = .003). The chlorhexidine soap and bath basin method cost $3.18 as compared with $5.52 for chlorhexidine-impregnated wipes (74% higher).



The chlorhexidine bathing protocol is easy to implement, cost-effective, and led to decreased unit-acquired MRSA rates in a variety of adult intensive care units.
Prevalence of unrecognized depression and associated factors among patients attending medical outpatient department in Adare Hospital, Hawassa, Ethiopia

Depression is an illness that involves the body, mood, and thoughts and that affects the way a person eats, sleeps, feels about him or herself and thinks about things. Depression is one of the most common mental disorders affecting 121 million people in the world, and it frequently goes unrecognized among patients. It is estimated that 5%-10% of the population at any given time is suffering from identifiable depression needing psychiatric or psychosocial intervention. An institution-based cross-sectional study design was implemented to determine the magnitude and associated factors of unrecognized depression among patients attending the adult medical outpatient department in Adare Hospital, Hawassa, Southern Nations, Nationalities, and Peoples' Region, Ethiopia, among 326 patients selected using systematic random sampling technique. Data were collected using the interviewer-administered technique. A structured questionnaire was used to collect data on sociodemographic characteristics and other independent variables. Depression was assessed using the Patient Health Questionnaire 9. Data were entered and ana-lyzed using SPSS 20. The level of significance was determined at P<0.05. About 326 patients were interviewed, of whom 186 (57.1%) were males. The mean age of participant was 34 with standard deviation of ±13.1 years. Current substance users accounted for 106 (32.5%) of the total participants. Of 326 respondents, 80 (24.5%) had significant depressive symptoms, while the detection rate of depression by the clinician was 0%. Depression was associated with female sex (adjusted odds ratio [AOR] =1.63 [1.14-2.34]), age >60 years (AOR =4.14 [1.87-9.14]), being divorced (AOR =3.13 [1.70-5.76]), and having an average monthly income <750 ETB (AOR =1.92 [1.119-3.195]). The findings of this study revealed that the prevalence of depression among patients attending general medical outpatient department was highly underrecognized and unmanaged. On the basis of these results, we recommended that health-care providers perform a thorough assessment to address common mental disorders, especially depression, and suggest that training to recognize and manage depression appropriately be given.
Robotic surgery update

Minimally invasive surgical techniques have revolutionized the field of surgery. Telesurgical manipulators (robots) and new information technologies strive to improve upon currently available minimally invasive techniques and create new possibilities. A retrospective review of all robotic cases at a single academic medical center from August 2000 until November 2002 was conducted. A comprehensive literature evaluation on robotic surgical technology was also performed. Robotic technology is safely and effectively being applied at our institution. Robotic and information technologies have improved upon minimally invasive surgical techniques and created new opportunities not attainable in open surgery. Robotic technology offers many benefits over traditional minimal access techniques and has been proven safe and effective. Further research is needed to better define the optimal application of this technology. Credentialing and educational requirements also need to be delineated.
A Survey on Radiation Pattern Reconfigurable Antennas

In recent years, the study of radiation pattern reconfigurable antennas has made great progress. Radiation pattern reconfigurable antennas have more advantages and better prospects compared with conventional antennas. They can be used to avoid noisy environments, maneuver away from electronic jamming, improve system gain and security, save energy by directing signals only towards the intended direction, and increase the number of subscribers by having a broad pattern in the wireless communication system. The latest researches of the radiation pattern reconfigurable antennas are analyzed and summarized in this paper to present the characteristics and classification. The trend of radiation pattern reconfigurable antennas' development is given at the end of the paper.
WU-NEAT: A clinically validated, open- source MATLAB toolbox for limited-channel neonatal EEG analysis

Limited-channel EEG research in neonates is hindered by lack of open, accessible analytic tools. To overcome this limitation, we have created the Washington University- Neonatal EEG Analysis Toolbox (WU-NEAT), containing two of the most commonly used tools, provided in an open-source, clinically-validated package running within MATLAB.  The first algorithm is the amplitude-integrated EEG (aEEG), which is generated by filtering, rectifying and time-compressing the original EEG recording, with subsequent semi-logarithmic display. The second algorithm is the spectral edge frequency (SEF), calculated as the critical frequency below which a user- defined proportion of the EEG spectral power is located. The aEEG algorithm was validated by three experienced reviewers. Reviewers evaluated aEEG recordings of fourteen preterm/term infants, displayed twice in random order, once using a reference algorithm and again using the WU-NEAT aEEG algorithm. Using standard methodology, reviewers assigned a background pattern classification. Inter/intra-rater reliability was assessed. For the SEF, calculations were made using the same fourteen recordings, first with the reference and then with the WU-NEAT algorithm. Results were compared using Pearson's correlation coefficient.  For the aEEG algorithm, intra- and inter-rater reliability was 100% and 98%, respectively. For the SEF, the mean (SD) Pearson correlation coefficient between algorithms was 0.96 (0.04).  We have demonstrated a clinically-validated toolbox for generating the aEEG as well as calculating the SEF from EEG data. Open-source access will enable widespread use of common analytic algorithms which are device-independent and not subject to obsolescence, thereby facilitating future collaborative research in neonatal EEG.
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts

Electronic patient records remain a rather unexplored, but potentially rich data source for discovering correlations between diseases. We describe a general approach for gathering phenotypic descriptions of patients from medical records in a systematic and non-cohort dependent manner. By extracting phenotype information from the free-text in such records we demonstrate that we can extend the information contained in the structured record data, and use it for producing fine-grained patient stratification and disease co-occurrence statistics. The approach uses a dictionary based on the International Classification of Disease ontology and is therefore in principle language independent. As a use case we show how records from a Danish psychiatric hospital lead to the identification of disease correlations, which subsequently can be mapped to systems biology frameworks.
PENS-wheel (self balancing one-wheel vehicle) mechanical design and sensor system

Many electrical vehicles have been developed recently, and one of them is the vehicle type with the self-balancing capability. Portability also one of issue related to the development of electric vehicles. This paper presents one wheeled self-balancing electric vehicle namely PENS-Wheel. Since it only consists of one motor as its actuator, it becomes more portable than any other self-balancing vehicle types. This paper discusses on the implementation of Kalman filter for filtering the tilt sensor used by the self-balancing controller, mechanical design, and fabrication of the vehicle. The vehicle is designed based on the principle of the inverted pendulum by utilizing motor's torque on the wheel to maintain its upright position. The sensor system uses IMU which combine accelerometer and gyroscope data to get the accurate pitch angle of the vehicle. The paper presents the effects of Kalman filter parameters including noise variance of the accelerometer, noise variance of the gyroscope, and the measurement noise to the response of the sensor output. Finally, we present the result of the proposed filter and compare it with proprietary filter algorithm from InvenSense, Inc. running on Digital Motion Processor (DMP) inside the MPU6050 chip. The result of the filter algorithm implemented in the vehicle shows that it is capable in delivering comparable performance with the proprietary one.
Wellbeing and resilience: mechanisms of transmission of health and risk in parents with complex mental health problems and their offspring—The WARM Study

The WARM study is a longitudinal cohort study following infants of mothers with schizophrenia, bipolar disorder, depression and control from pregnancy to infant 1 year of age.



Children of parents diagnosed with complex mental health problems including schizophrenia, bipolar disorder and depression, are at increased risk of developing mental health problems compared to the general population. Little is known regarding the early developmental trajectories of infants who are at ultra-high risk and in particular the balance of risk and protective factors expressed in the quality of early caregiver-interaction.



We are establishing a cohort of pregnant women with a lifetime diagnosis of schizophrenia, bipolar disorder, major depressive disorder and a non-psychiatric control group. Factors in the parents, the infant and the social environment will be evaluated at 1, 4, 16 and 52 weeks in terms of evolution of very early indicators of developmental risk and resilience focusing on three possible environmental transmission mechanisms: stress, maternal caregiver representation, and caregiver-infant interaction.



The study will provide data on very early risk developmental status and associated psychosocial risk factors, which will be important for developing targeted preventive interventions for infants of parents with severe mental disorder.
A Computer Network Attack Taxonomy and Ontology

Computer network attacks differ in the motivation of the entity behind the attack, the execution and the end result. The diversity of attacks has a consequence that no standard classification exists. The benefit of automated classification of attacks, means that an attack could be mitigated accordingly. The authors extend a previous, initial taxonomy of computer network attacks which forms the basis of a proposed network attack ontology in this paper. The objective of this ontology is to automate the classification of a network attack during its early stages. Most published taxonomies present an attack from either the attacker's or defender's point of view. The authors’ taxonomy presents both these points of view. The framework for an ontology was developed using a core class, the "Attack Scenario", which can be used to characterize and classify computer network attacks.
15th Scandinavian Symposium and Workshops on Algorithm Theory, SWAT 2016, June 22-24, 2016, Reykjavik, Iceland

We consider a lowerand upper-bounded generalization of the classical facility location problem, where each facility has a capacity (upper bound) that limits the number of clients it can serve and a lower bound on the number of clients it must serve if it is opened. We develop an LP rounding framework that exploits a Voronoi diagram-based clustering approach to derive the first bicriteria constant approximation algorithm for this problem with non-uniform lower bounds and uniform upper bounds. This naturally leads to the the first LP-based approximation algorithm for the lower bounded facility location problem (with non-uniform lower bounds). We also demonstrate the versatility of our framework by extending this and presenting the first constant approximation algorithm for some connected variant of the problems in which the facilities are required to be connected as well.
An Interval Type-2 Fuzzy Logic Toolbox for Control Applications

This paper presents the development and design of a graphical user interface and a command line programming toolbox for construction, edition and observation of interval type-2 fuzzy inference systems. The interval type-2 fuzzy logic system toolbox (IT2FLS), is an environment for interval type-2 fuzzy logic inference system development. Tools that cover the different phases of the fuzzy system design process, from the initial description phase, to the final implementation phase, build the toolbox. The toolbox's best qualities are the capacity to develop complex systems and the flexibility that permits the user to extend the availability of functions for working with the use of type-2 fuzzy operators, linguistic variables, interval type-2 membership functions, defuzzification methods and the evaluation of interval type-2 fuzzy inference systems.
Reproductive biology of the greyfin croaker Pennahia anea in the northern South China Sea

The greyfin croaker Pennahia anea is one of the most common croakers currently on retail sale in Hong Kong, but there are no regional studies on its biology or fishery. The reproductive biology of the species, based on 464 individuals obtained from local wet markets, was studied over 16 months (January 2008–April 2009) using gonadosomatic index (GSI) and gonad histology. Sizes used in this study ranged from 8.0 to 19.0 cm in standard length (SL). Both the larger and smaller size classes were missing from samples, implying that they are infrequently caught in the fishery. Based on GSI data, the approximate minimum sizes for male and female maturation were 12 cm SL. The size at 50% maturity for females was 14.3 cm SL, while all males in the samples were mature. Both GSI and gonad histology suggest that spawning activity occurred from March–April to June, with a peak in May. Since large croakers are declining in the local and regional fisheries, small species such as P. anea are becoming important, although they are mostly taken as bycatch. In view of unmanaged fishing pressure, and given the decline in large croakers and sizes of P. anea presently caught, proper management of the species is suggested.
High-frequency characterization of through package vias formed by focused electrical-discharge in thin glass interposers

This paper presents the modeling, design, fabrication and characterization, up to 30 GHz, of low loss and high aspect-ratio 55 μm diameter through package vias (TPVs) in 300 μm thick glass interposers. These TPVs were fabricated using a novel, high-throughput, focused electrical discharge method and low cost panel-based double-side metallization processes. Such a glass interposer is targeted at two emerging applications, (a) large 30 mm to 60 mm body size 2.5D interposers to achieve 28.8 Gbps logic-memory bandwidth and (b) 3D interposers for mm wave applications at 28 GHz local multipoint distribution service (LMDS) for future 5G networks. Accurate measurement of the electrical performance of fine pitch metallized through vias in glass up to 30 GHz and beyond is critical for both these high performance interposer applications. In this paper, two novel characterization methods are applied: 1) the short-circuit-and-open-circuit method and 2) the dual-via-chain method. The resistance and the inductance of a single via are extracted by using a short-circuit structure along with an open-circuit structure. At 10 GHz, the values for the series resistance and inductance have average values of 0.1 Ω and 160 pH respectively. Long dual-via chains were designed to evaluate their performance in insertion loss, delay and eye diagram. The insertion loss achieved with the longest dual-via chain was found to be less than 1 dB/cm up to 30 GHz with only a 6.2 ps delay in the TPVs, and the simulations indicate a wide open eye.