nils-herrmann/clean_scirepeval huggingface dataset:
Effects of Bidens pilosa L. var. radiata Scherff on experimental gastric lesion

Bidens pilosa L. var. radiata Scherff (BP) is a plant used as a traditional folk medicine. BP, cultivated with only green manure on Miyako Island, Okinawa prefecture, was processed to powder and is referred to as MMBP. We have reported that MMBP has antioxidant, anti-inflammatory, and anti-allergy properties. In this study, we investigated the effects of MMBP on several experimental gastric lesions induced by HCl/EtOH, a non-steroidal anti-inflammatory drug, or cold-restraint stress, comparing these results with those of rutin or anti-ulcerogenic drugs (cimetidine or sucralfate) based on the lesion index and hemorrhage from the gastric lesions. Orally administered MMBP prevented the progression of the gastric lesions. Moreover, treatment with MMBP, rutin, or sucralfate, which had potent antioxidative activity, inhibited increases in the levels of thiobarbituric acid reactive substances (TBARS) in the gastric mucosal lesions. The inhibition of the gastric mucosal TBARS content by MMBP may have been due to the antioxidant effects of MMBP. These results indicate that MMBP prevents the progression of acute gastric mucosal lesions, possibly by suppressing oxidative stress in the gastric mucosa.
Forensic analysis of xbox one and playstation 4 gaming consoles

This paper highlights the challenges faced due to non-availability of trusted specialized forensic tools for conducting investigation on gaming consoles. We have developed a framework to examine existing state-of-the-art forensic acquisition and analysis tools by exploring their applicability to eighth generation gaming consoles such as the Xbox One and PlayStation 4. The framework is used to validate the acquired images, compare the retrieved artifacts before and after restoring the console to the factory settings, and to conduct network forensics on both devices. The paper reveals the need of specialized forensic tools for forensic analysis of these devices.
Stealthy Deception Attacks Against SCADA Systems

SCADA protocols for Industrial Control Systems (ICS) are vulnerable to network attacks such as session hijacking. Hence, research focuses on network anomaly detection based on meta–data (message sizes, timing, command sequence), or on the state values of the physical process. In this work we present a class of semantic network-based attacks against SCADA systems that are undetectable by the above mentioned anomaly detection. After hijacking the communication channels between the Human Machine Interface (HMI) and Programmable Logic Controllers (PLCs), our attacks cause the HMI to present a fake view of the industrial process, deceiving the human operator into taking manual actions. Our most advanced attack also manipulates the messages generated by the operator’s actions, reversing their semantic meaning while causing the HMI to present a view that is consistent with the attempted human actions. The attacks are totaly stealthy because the message sizes and timing, the command sequences, and the data values of the ICS’s state all remain legitimate. We implemented and tested several attack scenarios in the test lab of our local electric company, against a real HMI and real PLCs, separated by a commercial-grade firewall. We developed a real-time security assessment tool, that can simultaneously manipulate the communication to multiple PLCs and cause the HMI to display a coherent system–wide fake view. Our tool is configured with message-manipulating rules written in an ICS Attack Markup Language (IAML) we designed. Our semantic attacks all successfully fooled the operator and brought the system to states of blackout and possible equipment damage.
Automatic rock climbing route inference using wearables

Rock climbing is a relatively new, but highly popular sport. In the current state of the art, there is no technology that can record climbing routes and statistics about a climber's exercises. Taking photographs of routes is the state of art method of sharing descriptions of climbing routes with other climbing enthusiasts. We propose to automatically track climbing routes using wearable devices placed on the hands and feet of a climber. Each wearable device has an IMU sensor and a barometer on it. In addition, the devices on the hands have EMG sensors on them. The combination of these sensors can detect when a person makes contact with a hold, and the relative position of the hold contacted with respect to the current hold, and the type of hold. A map of the route, including annotations of the hand hold and foot holds used by the climber, can be inferred by performing dead reckoning based navigation for each of the devices.
An Expectation-Maximization Algorithm Based Kalman Smoother Approach for Event-Related Desynchronization (ERD) Estimation from EEG

We consider the problem of event-related desynchronization (ERD) estimation. In existing approaches, model parameters are usually found manually through experimentation, a tedious task that often leads to suboptimal estimates. We propose an expectation-maximization (EM) algorithm for model parameter estimation that is fully automatic and gives optimal estimates. Further, we apply a Kalman smoother to obtain ERD estimates. Results show that the EM algorithm significantly improves the performance of the Kalman smoother. Application of the proposed approach to the motor-imagery EEG data shows that useful ERD patterns can be obtained even without careful selection of frequency bands.
Designing omnidirectional bifilar Helix Antenna for circular polarization

In this paper it is shown that bifilar of a Quadrifilar Helix Antenna (QHA) when designed in side-fed configuration at a given diameter and length of helical arm, effectively becomes equivalent to combination of a loop and a dipole antenna. The vertical and horizontal electric fields caused by these equivalent antennas can be made to vary by changing the turn angle of the bifilar. It is shown how the variation in horizontal and vertical electric field dominance is seen until perfect circular polarization is achieved when two fields are equal at a certain turn angle where area of the loop equals product of pitch of helix and radian length i.e. equivalent dipole length. The antenna is low profile and does not require ground plane and thus can be used in high speed aerodynamic and platform bodies made of composite material where metallic ground is unavailable. Additionally not requiring ground plane increases the isolation between the antennas with stable radiation pattern and hence can be used in MIMO systems.
Characterizing Motherese: On the Computational Structure of Child-Directed Language

We report a quantitative analysis of the cross-utterance coordination observed in child-directed language, where successive utterances often overlap in a manner that makes their constituent structure more prominent, and describe the application of a recently published unsupervised algorithm for grammar induction to the largest available corpus of such language, producing a grammar capable of accepting and generating novel wellformed sentences. We also introduce a new corpus-based method for assessing the precision and recall of an automatically acquired generative grammar without recourse to human judgment. The present work sets the stage for the eventual development of more powerful unsupervised algorithms for language acquisition, which would make use of the coordination structures present in natural child-directed speech.
Fluid and electrolytes in the aged.

To review the physiological changes in fluid and electrolytes that occur in aging.



Data collected for this review were identified from a MEDLINE database search of the English-language literature. The indexing terms were fluids, intravenous fluids, fluid resuscitation, fluid management, perioperative, electrolytes, aged, elderly, hemodynamics, hyponatremia, hypernatremia, hypocalcemia, hypercalcemia, hypomagnesemia, hypermagnesemia, hypophosphatemia, hypokalemia, and hyperkalemia. Relevant references from articles obtained by means of the above search terms were also used.



All pertinent studies were included. Only articles that were case presentations or did not specifically address the topic were excluded.



The fastest-growing segment of the population in the United States is individuals 65 years or older. It is imperative that health care professionals review the physiological changes that manifest during the aging process. Fluids and electrolytes are important perioperative factors that undergo age-related changes. These changes include impaired thirst perception; decreased glomerular filtration rate; alterations in hormone levels, including antidiuretic hormone, atrial natriuretic peptide, and aldosterone; decreased urinary concentrating ability; and limitations in excretion of water, sodium, potassium, and acid.



There are age-related alterations in the homeostatic mechanisms used to maintain electrolyte and water balance. Health care providers must familiarize themselves with these alterations to guide treatment of this growing population.
Better Alternatives to OSPF Routing

The current standard for intra-domain network routing, Open Shortest Path First (OSPF), suffers from a number of problems-the tunable parameters (the weights) are hard to optimize, the chosen paths are not robust under changes in traffic or network state, and some network links are over-used at the expense of others. We present prototypical scenarios that illustrate these problems. Then we propose several variants of a protocol to eliminate or alleviate them and demonstrate the improvements in performance under those scenarios. We also prove that these protocols never perform significantly worse than OSPF and show that for at least a limited class of network topologies, it is possible to find efficiently the optimal weight settings. Some of the problems with OSPF are well known; indeed, there are several routing protocols that perform better than OSPF in routing quality (i.e., in terms of congestion, delay, etc.). OSPF’s popularity persists in part because of its efficiency with respect to several resource bounds. In contrast, many competing protocols that provide routing superior to OSPF are computationally prohibitive. Motivated by this consideration, we designed our protocols not only to achieve better routing quality than OSPF, but also to use resources in amount comparable with OSPF with respect to offline broadcast communication, size of and time to compute routing tables, packet delivery latency, and packet header structure and size.
Assessing stochastic algorithms for large scale nonlinear least squares problems using extremal probabilities of linear combinations of gamma random variables

This article considers stochastic algorithms for efficiently solving a class of large scale non-linear least squares (NLS) problems which frequently arise in applications. We propose eight variants of a practical randomized algorithm where the uncertainties in the major stochastic steps are quantified. Such stochastic steps involve approximating the NLS objective function using Monte-Carlo methods, and this is equivalent to the estimation of the trace of corresponding symmetric positive semi-definite (SPSD) matrices. For the latter, we prove tight necessary and sufficient conditions on the sample size (which translates to cost) to satisfy the prescribed probabilistic accuracy. We show that these conditions are practically computable and yield small sample sizes. They are then incorporated in our stochastic algorithm to quantify the uncertainty in each randomized step. The bounds we use are applications of more general results regarding extremal tail probabilities of linear combinations of gamma distributed random variables. We derive and prove new results concerning the maximal and minimal tail probabilities of such linear combinations, which can be considered independently of the rest of this paper.
A case of hydroa vacciniforme.

Hydroa vacciniforme (HV) is a rare and chronic pediatric disorder that is characterized by photosensitivity and recurrent vesicles that heal with vacciniforme scarring. The pathogenesis of HV is unknown; no chromosome abnormality has been identified. HV patients have no abnormal laboratory results, so the diagnosis of HV is based on identifying the associated histological findings in a biopsy specimen and using repetitive ultraviolet phototesting to reproduce the characteristic vesicles on a patient's skin. Herein, we present a case of HV in a 7-year-old female who was diagnosed with HV according to histopathology and ultraviolet phototesting.
Pixel Deconvolutional Networks

Deconvolutional layers have been widely used in a variety of deep models for up-sampling, including encoder-decoder networks for semantic segmentation and deep generative models for unsupervised learning. One of the key limitations of deconvolutional operations is that they result in the so-called checkerboard problem. This is caused by the fact that no direct relationship exists among adjacent pixels on the output feature map. To address this problem, we propose the pixel deconvolutional layer (PixelDCL) to establish direct relationships among adjacent pixels on the up-sampled feature map. Our method is based on a fresh interpretation of the regular deconvolution operation. The resulting PixelDCL can be used to replace any deconvolutional layer in a plug-and-play manner without compromising the fully trainable capabilities of original models. The proposed PixelDCL may result in slight decrease in efficiency, but this can be overcome by an implementation trick. Experimental results on semantic segmentation demonstrate that PixelDCL can consider spatial features such as edges and shapes and yields more accurate segmentation outputs than deconvolutional layers. When used in image generation tasks, our PixelDCL can largely overcome the checkerboard problem suffered by regular deconvolution operations.
3D Pose Estimation and 3D Model Retrieval for Objects in the Wild

We propose a scalable, efficient and accurate approach to retrieve 3D models for objects in the wild. Our contribution is twofold. We first present a 3D pose estimation approach for object categories which significantly outperforms the state-of-the-art on Pascal3D+. Second, we use the estimated pose as a prior to retrieve 3D models which accurately represent the geometry of objects in RGB images. For this purpose, we render depth images from 3D models under our predicted pose and match learned image descriptors of RGB images against those of rendered depth images using a CNN-based multi-view metric learning approach. In this way, we are the first to report quantitative results for 3D model retrieval on Pascal3D+, where our method chooses the same models as human annotators for 50% of the validation images on average. In addition, we show that our method, which was trained purely on Pascal3D+, retrieves rich and accurate 3D models from ShapeNet given RGB images of objects in the wild.
Printed atmospheric spark gaps as ESD-protection

Printed atmospheric spark gaps as ESD-protection on PCBs are examined. At first an introduction to the physic behind spark gaps. Afterward the time lag (response time) vs. voltage is measured with high load impedance. The dependable clamp voltage (will be defined later) is measured as a function of the load impedance and the local field in the air gap is simulated with FIT simulation software. At last the observed results are discussed on the basic of the physic and the simulations.
Validation of Platelet Counting Accuracy With the Celltac F Automated
Hematology Analyzer

Rapid and accurate analysis of platelet count plays an important role in evaluating hemorrhagic status. Therefore, we evaluated platelet counting performance of a hematology analyzer, Celltac F (MEK-8222, Nihon Kohden Corporation, Tokyo, Japan), that features easy use with low reagent consumption and high throughput while occupying minimal space in the clinical laboratory. All blood samples were anticoagulated with dipotassium ethylenediaminetetraacetic acid (EDTA-2K). The samples were stored at room temperature (18(;)C-22(;)C) and tested within 4 hours of phlebotomy. We evaluated the counting ability of the Celltac F hematology analyzer by comparing it with the platelet counts obtained by the flow cytometry method that ISLH and ICSH recommended, and also the manual visual method by Unopette (Becton Dickinson Vacutainer Systems). The ICSH/ISLH reference method is based on the fact that platelets can be stained with monoclonal antibodies to CD41 and/or CD61. The dilution ratio was optimized after the precision, coincidence events, and debris counts were confirmed by the reference method. Good correlation of platelet count between the Celltac F and the ICSH/ISLH reference method (r = 0.99, and the manual visual method (r= 0.93) were obtained. The regressions were y = 0.90 x+9.0 and y=1.11x+8.4, respectively. We conclude that the Celltac F hematology analyzer for platelet counting was well suited to the ICSH/ISLH reference method for rapidness and reliability.
Design and antagonistic control of a tendon-driven Minimally Invasive Surgical robotic tool

This article is concerned with the design, implementation and control of a redundant robotic tool for Minimal Invasive Surgical (MIS) operations. The robotic tool is modular, comprised of identical stages of dual rotational Degrees of Freedom (DoF). An antagonistic tendon-driven mechanism using two DC-motors in a puller-follower configuration is used for each DoF. The inherent Coulomb friction is compensated using an adaptive scheme while varying the follower's reaction. Preliminary experimental results are provided to investigate the efficiency of the robot in typical surgical manoeuvres.
Fractional flow reserve versus angiography for guiding percutaneous coronary intervention.

In patients with multivessel coronary artery disease who are undergoing percutaneous coronary intervention (PCI), coronary angiography is the standard method for guiding the placement of the stent. It is unclear whether routine measurement of fractional flow reserve (FFR; the ratio of maximal blood flow in a stenotic artery to normal maximal flow), in addition to angiography, improves outcomes.



In 20 medical centers in the United States and Europe, we randomly assigned 1005 patients with multivessel coronary artery disease to undergo PCI with implantation of drug-eluting stents guided by angiography alone or guided by FFR measurements in addition to angiography. Before randomization, lesions requiring PCI were identified on the basis of their angiographic appearance. Patients assigned to angiography-guided PCI underwent stenting of all indicated lesions, whereas those assigned to FFR-guided PCI underwent stenting of indicated lesions only if the FFR was 0.80 or less. The primary end point was the rate of death, nonfatal myocardial infarction, and repeat revascularization at 1 year.



The mean (+/-SD) number of indicated lesions per patient was 2.7+/-0.9 in the angiography group and 2.8+/-1.0 in the FFR group (P=0.34). The number of stents used per patient was 2.7+/-1.2 and 1.9+/-1.3, respectively (P<0.001). The 1-year event rate was 18.3% (91 patients) in the angiography group and 13.2% (67 patients) in the FFR group (P=0.02). Seventy-eight percent of the patients in the angiography group were free from angina at 1 year, as compared with 81% of patients in the FFR group (P=0.20).



Routine measurement of FFR in patients with multivessel coronary artery disease who are undergoing PCI with drug-eluting stents significantly reduces the rate of the composite end point of death, nonfatal myocardial infarction, and repeat revascularization at 1 year.
An Improved Integrality Gap for the Calinescu-Karloff-Rabani Relaxation for Multiway Cut

We construct an improved integrality gap instance for the Călinescu-Karloff-Rabani LP relaxation of the Multiway Cut problem. In particular, for k > 3 terminals, our instance has an integrality ratio of 6/(5+ 1 k−1 )−ε, for every constant ε > 0. For every k > 4, our result improves upon a long-standing lower bound of 8/(7 + 1 k−1 ) by Freund and Karloff [FK00]. Due to Manokaran et al.’s result [MNRS08], our integrality gap also implies Unique Games hardness of approximating Multiway Cut of the same ratio.
Auto-WEKA: combined selection and hyperparameter optimization of classification algorithms

Many different machine learning algorithms exist; taking into account each algorithm's hyperparameters, there is a staggeringly large number of possible alternatives overall. We consider the problem of simultaneously selecting a learning algorithm and setting its hyperparameters, going beyond previous work that attacks these issues separately. We show that this problem can be addressed by a fully automated approach, leveraging recent innovations in Bayesian optimization. Specifically, we consider a wide range of feature selection techniques (combining 3 search and 8 evaluator methods) and all classification approaches implemented in WEKA's standard distribution, spanning 2 ensemble methods, 10 meta-methods, 27 base classifiers, and hyperparameter settings for each classifier. On each of 21 popular datasets from the UCI repository, the KDD Cup 09, variants of the MNIST dataset and CIFAR-10, we show classification performance often much better than using standard selection and hyperparameter optimization methods. We hope that our approach will help non-expert users to more effectively identify machine learning algorithms and hyperparameter settings appropriate to their applications, and hence to achieve improved performance.
Patent Foramen Ovale Closure or Antiplatelet Therapy for Cryptogenic Stroke.

The efficacy of closure of a patent foramen ovale (PFO) in the prevention of recurrent stroke after cryptogenic stroke is uncertain. We investigated the effect of PFO closure combined with antiplatelet therapy versus antiplatelet therapy alone on the risks of recurrent stroke and new brain infarctions.



In this multinational trial involving patients with a PFO who had had a cryptogenic stroke, we randomly assigned patients, in a 2:1 ratio, to undergo PFO closure plus antiplatelet therapy (PFO closure group) or to receive antiplatelet therapy alone (antiplatelet-only group). Imaging of the brain was performed at the baseline screening and at 24 months. The coprimary end points were freedom from clinical evidence of ischemic stroke (reported here as the percentage of patients who had a recurrence of stroke) through at least 24 months after randomization and the 24-month incidence of new brain infarction, which was a composite of clinical ischemic stroke or silent brain infarction detected on imaging.



We enrolled 664 patients (mean age, 45.2 years), of whom 81% had moderate or large interatrial shunts. During a median follow-up of 3.2 years, clinical ischemic stroke occurred in 6 of 441 patients (1.4%) in the PFO closure group and in 12 of 223 patients (5.4%) in the antiplatelet-only group (hazard ratio, 0.23; 95% confidence interval [CI], 0.09 to 0.62; P=0.002). The incidence of new brain infarctions was significantly lower in the PFO closure group than in the antiplatelet-only group (22 patients [5.7%] vs. 20 patients [11.3%]; relative risk, 0.51; 95% CI, 0.29 to 0.91; P=0.04), but the incidence of silent brain infarction did not differ significantly between the study groups (P=0.97). Serious adverse events occurred in 23.1% of the patients in the PFO closure group and in 27.8% of the patients in the antiplatelet-only group (P=0.22). Serious device-related adverse events occurred in 6 patients (1.4%) in the PFO closure group, and atrial fibrillation occurred in 29 patients (6.6%) after PFO closure.



Among patients with a PFO who had had a cryptogenic stroke, the risk of subsequent ischemic stroke was lower among those assigned to PFO closure combined with antiplatelet therapy than among those assigned to antiplatelet therapy alone; however, PFO closure was associated with higher rates of device complications and atrial fibrillation.