nils-herrmann/clean_scirepeval huggingface dataset:
Exemplary Design of a DICOM Structured Report Template for CBIR Integration into Radiological Routine

The large and continuously growing amount of medical image data demands access methods with regards to content rather than simple text-based queries. The potential benefits of content-based image retrieval (CBIR) systems for computer-aided diagnosis (CAD) are evident and have been approved. Still, CBIR is not a well-established part of daily routine of radiologists. We have already presented a concept of CBIR integration for the radiology workflow in accordance with the Integrating the Healthcare Enterprise (IHE) framework. The retrieval result is composed as a Digital Imaging and Communication in Medicine (DICOM) Structured Reporting (SR) document. The use of DICOM SR provides interchange with PACS archive and image viewer. It offers the possibility of further data mining and automatic interpretation of CBIR results. However, existing standard templates do not address the domain of CBIR. We present a design of a SR template customized for CBIR. Our approach is based on the DICOM standard templates and makes use of the mammography and chest CAD SR templates. Reuse of approved SR sub-trees promises a reliable design which is further adopted to the CBIR domain. We analyze the special CBIR requirements and integrate the new concept of similar images into our template. Our approach also includes the new concept of a set of selected images for defining the processed images for CBIR. A commonly accepted pre-defined template for the presentation and exchange of results in a standardized format promotes the widespread application of CBIR in radiological routine.
On semi-supervised linear regression in covariate shift problems

Semi-supervised learning approaches are trained using the full training (labeled) data and available testing (unlabeled) data. Demonstrations of the value of training with unlabeled data typically depend on a smoothness assumption relating the conditional expectation to high density regions of the marginal distribution and an inherent missing completely at random assumption for the labeling. So-called covariate shift poses a challenge for many existing semi-supervised or supervised learning techniques. Covariate shift models allow the marginal distributions of the labeled and unlabeled feature data to differ, but the conditional distribution of the response given the feature data is the same. An example of this occurs when a complete labeled data sample and then an unlabeled sample are obtained sequentially, as it would likely follow that the distributions of the feature data are quite different between samples. The value of using unlabeled data during training for the elastic net is justified geometrically in such practical covariate shift problems. The approach works by obtaining adjusted coefficients for unlabeled prediction which recalibrate the supervised elastic net to compromise: (i) maintaining elastic net predictions on the labeled data with (ii) shrinking unlabeled predictions to zero. Our approach is shown to dominate linear supervised alternatives on unlabeled response predictions when the unlabeled feature data are concentrated on a low dimensional manifold away from the labeled data and the true coefficient vector emphasizes directions away from this manifold. Large variance of the supervised predictions on the unlabeled set is reduced more than the increase in squared bias when the unlabeled responses are expected to be small, so an improved compromise within the bias-variance tradeoff is the rationale for this performance improvement. Performance is validated on simulated and real data.
Examining a hate speech corpus for hate speech detection and popularity prediction

As research on hate speech becomes more and more relevant every day, most of it is still focused on hate speech detection. By attempting to replicate a hate speech detection experiment performed on an existing Twitter corpus annotated for hate speech, we highlight some issues that arise from doing research in the field of hate speech, which is essentially still in its infancy. We take a critical look at the training corpus in order to understand its biases, while also using it to venture beyond hate speech detection and investigate whether it can be used to shed light on other facets of research, such as popularity of hate tweets.
ShapeOp—A Robust and Extensible Geometric Modelling Paradigm

We present ShapeOp, a robust and extensible geometric modelling paradigm. ShapeOp builds on top of the state-of-the-art physics solver (Bouaziz et al 2014). We discuss the main theoretical advantages of the underlying solver and how this influences our modelling paradigm. We provide an efficient open-source C++ implementation (www.shapeop.org) together with scripting interfaces to enable ShapeOp in Rhino/Grasshopper and potentially other tools. This implementation can also act as a template for future integration of computer graphics research. To evaluate the potential of ShapeOp we present various examples using our implementation and discuss potential implications on the design process.
Mobile Shopping Consumers' Behavior: An Exploratory Study and Review

Mobile Technology is creating a range of tremendous opportunities and new revenue streams for businesses across industry sectors through the delivery of chargeable mobile products and services via the deployment of innovative value-added solutions that exploit the commercial benefits of mobility. To keep up with the pace of change, companies increasingly want to understand the behavioral attitude of the modern mobile consumer. The aim of this paper is to find out users’ reaction towards different parameters that would influence their intention to utilize their mobile devices in order to purchase products and services online focusing on the current Greek reality. The extant literature focuses on understanding the factors that might affect consumers’ behavior intention to adopt m-shopping; these studies are mostly based on behavioral intention theories, such as Technology Acceptance Model, Diffusion of Innovation and Unified Theory of Acceptance and Use of Technology. In this study, new theoretical constructs are combined with existing evidence in order to extend the Technology Acceptance Model as it was initially established by Davis and later further enriched by other researchers. The proposed model includes behavioral intention, mobile skillfulness, enjoyment, anxiety, perceived usefulness, perceived ease of use, trust, relationship drivers, and innovativeness.
Leveraging stereopsis for saliency analysis

Stereopsis provides an additional depth cue and plays an important role in the human vision system. This paper explores stereopsis for saliency analysis and presents two approaches to stereo saliency detection from stereoscopic images. The first approach computes stereo saliency based on the global disparity contrast in the input image. The second approach leverages domain knowledge in stereoscopic photography. A good stereoscopic image takes care of its disparity distribution to avoid 3D fatigue. Particularly, salient content tends to be positioned in the stereoscopic comfort zone to alleviate the vergence-accommodation conflict. Accordingly, our method computes stereo saliency of an image region based on the distance between its perceived location and the comfort zone. Moreover, we consider objects popping out from the screen salient as these objects tend to catch a viewer's attention. We build a stereo saliency analysis benchmark dataset that contains 1000 stereoscopic images with salient object masks. Our experiments on this dataset show that stereo saliency provides a useful complement to existing visual saliency analysis and our method can successfully detect salient content from images that are difficult for monocular saliency analysis methods.
Deterministic compressed-sensing matrices: Where Toeplitz meets Golay

Recently, the statistical restricted isometry property (STRIP) has been formulated to analyze the performance of deterministic sampling matrices for compressed sensing. In this paper, a class of deterministic matrices which satisfy STRIP with overwhelming probability are proposed, by taking advantage of concentration inequalities using Stein's method. These matrices, called orthogonal symmetric Toeplitz matrices (OSTM), guarantee successful recovery of all but an exponentially small fraction of K-sparse signals. Such matrices are deterministic, Toeplitz, and easy to generate. We derive the STRIP performance bound by exploiting the specific properties of OSTM, and obtain the near-optimal bound by setting the underlying sign sequence of OSTM as the Golay sequence. Simulation results show that these deterministic sensing matrices can offer reconstruction performance similar to that of random matrices.
Information extraction: Evaluating named entity recognition from classical Malay documents

Natural Language Processing (NLP) is an important field of research in Computer Science. NLP is the process of analyzing texts based on a set of theories and technologies, and recent studies focused more on Information Extraction (IE). In Information Extraction, there are few steps or commonly known as task to be followed, which are named entity recognition, relation detection and classification, temporal and event processing, and template filling. Recent researches in Malay languages mainly focused on newspaper articles and since this research experiment is experimenting on classical documents, there is a need to identify the best way to extract noun from existing methods. This paper proposes to conduct a research about extracting nouns from Malay classical documents. The result shows that experiment using the Noun Extraction using Morphological Rules (Verb, Adjective and Noun Affixes) that has 77.61% chances of identifying a noun to contribute to the existing Malay noun list. As there is not any existing completed Malay noun list or dictionary that can be used as a guide, the results extracted still need to be judged by the language experts.
Sentiment Analysis of Citations Using Word2vec

Citation sentiment analysis is an important task in scientific paper analysis. Existing machine learning techniques for citation sentiment analysis are focusing on labor-intensive feature engineering, which requires large annotated corpus. As an automatic feature extraction tool, word2vec has been successfully applied to sentiment analysis of short texts. In this work, I conducted empirical research with the question: how well does word2vec work on the sentiment analysis of citations? The proposed method constructed sentence vectors (sent2vec) by averaging the word embeddings, which were learned from Anthology Collections (ACL-Embeddings). I also investigated polarity-specific word embeddings (PS-Embeddings) for classifying positive and negative citations. The sentence vectors formed a feature space, to which the examined citation sentence was mapped to. Those features were input into classifiers (support vector machines) for supervised classification. Using 10-cross-validation scheme, evaluation was conducted on a set of annotated citations. The results showed that word embeddings are effective on classifying positive and negative citations. However, hand-crafted features performed better for the overall classification.
DrugBank: a knowledgebase for drugs, drug actions and drug targets

DrugBank is a richly annotated resource that combines detailed drug data with comprehensive drug target and drug action information. Since its first release in 2006, DrugBank has been widely used to facilitate in silico drug target discovery, drug design, drug docking or screening, drug metabolism prediction, drug interaction prediction and general pharmaceutical education. The latest version of DrugBank (release 2.0) has been expanded significantly over the previous release. With approximately 4900 drug entries, it now contains 60% more FDA-approved small molecule and biotech drugs including 10% more 'experimental' drugs. Significantly, more protein target data has also been added to the database, with the latest version of DrugBank containing three times as many non-redundant protein or drug target sequences as before (1565 versus 524). Each DrugCard entry now contains more than 100 data fields with half of the information being devoted to drug/chemical data and the other half devoted to pharmacological, pharmacogenomic and molecular biological data. A number of new data fields, including food-drug interactions, drug-drug interactions and experimental ADME data have been added in response to numerous user requests. DrugBank has also significantly improved the power and simplicity of its structure query and text query searches. DrugBank is available at http://www.drugbank.ca.
An investigation on the identification of VoIP traffic: Case study on Gtalk and Skype

The classification of encrypted traffic on the fly from network traces represents a particularly challenging application domain. Recent advances in machine learning provide the opportunity to decompose the original problem into a subset of classifiers with non-overlapping behaviors, in effect providing further insight into the problem domain. Thus, the objective of this work is to classify VoIP encrypted traffic, where Gtalk and Skype applications are taken as good representatives. To this end, three different machine learning based approaches, namely, C4.5, AdaBoost and Genetic Programming (GP), are evaluated under data sets common and independent from the training condition. In this case, flow based features are employed without using the IP addresses, source/destination ports and payload information. Results indicate that C4.5 based machine learning approach has the best performance.
Adverse Effects Associated with Protein Intake above the Recommended Dietary Allowance for Adults

While high-protein consumption-above the current recommended dietary allowance for adults (RDA: 0.8 g protein/kg body weight/day)-is increasing in popularity, there is a lack of data on its potential adverse effects.  To determine the potential disease risks due to high protein/high meat intake obtained from diet and/or nutritional supplements in humans.  Healthy adult male and female subjects.  In order to identify relevant studies, the electronic databases, Medline and Google Scholar, were searched using the terms:"high protein diet," "protein overconsumption," "protein overuse," and "high meat diet." Papers not in English were excluded. Further studies were identified by citations in retrieved papers.  (21 experimental human studies and 11 reviews) were identified. The adverse effects associated with long-term high protein/high meat intake in humans were (a) disorders of bone and calcium homeostasis, (b) disorders of renal function, (c) increased cancer risk, (d) disorders of liver function, and (e) precipitated progression of coronary artery disease.  The findings of the present study suggest that there is currently no reasonable scientific basis in the literature to recommend protein consumption above the current RDA (high protein diet) for healthy adults due to its potential disease risks. Further research needs to be carried out in this area, including large randomized controlled trials.
Continuous Integration and Its Tools

Continuous integration has been around for a while now, but the habits it suggests are far from common practice. Automated builds, a thorough test suite, and committing to the mainline branch every day sound simple at first, but they require a responsible team to implement and constant care. What starts with improved tooling can be a catalyst for long-lasting change in your company's shipping culture. Continuous integration is more than a set of practices, it's a mindset that has one thing in mind: increasing customer value. The Web extra at http://youtu.be/tDl_cHfrJZo is an audio podcast of the Tools of the Trade column discusses how continuous integration is more than a set of practices, it's a mindset that has one thing in mind: increasing customer value.
Money Laundering on the Internet

Electronic money (or e-money) is money that is represented digitally and can be exchanged by means of smart card from one party to another without the need for an intermediary. It is anticipated that emoney will work just like paper money. One of its potential key features is anonymity. The proceeds of crime that are in the form of e-money could be used, to buy foreign currency and high value goods to be resold. E-money may therefore be used to place dirty money without having to smuggle cash or conduct face to face transactions.
Learning deep features for source color laser printer identification based on cascaded learning

Color laser printers have fast printing speed and high resolution, and forgeries using color laser printers can cause significant harm to society. A source printer identification technique can be employed as a countermeasure to those forgeries. This paper presents a color laser printer identification method based on cascaded learning of deep neural networks. The refiner network is trained by adversarial training to refine the synthetic dataset for halftone color decomposition. The halftone color decomposing ConvNet is trained with the refined dataset, and the trained knowledge is transferred to the printer identifying ConvNet to enhance the accuracy. The robustness about rotation and scaling is considered in training process, which is not considered in existing methods. Experiments are performed on eight color laser printers, and the performance is compared with several existing methods. The experimental results clearly show that the proposed method outperforms existing source color laser printer identification methods.
Case-based reasoning: A review

Case-Based Reasoning (CBR) is a relatively recent problem solving technique that is attracting increasing attention. However, the number of people with first-hand theoretical or practical experience of CBR is still small. The main objective of this review is to provide a comprehensive overview of the subject to people new to CBR. The paper outlines the development of CBR in the US in the 1980s. Tt describes the fundamental techniques of CBR and contrasts its approach to that of model-based reasoning systems. A critical review of currently available CBR software tools is followed by descriptions of CBR applications both from academic research and, in more detail, three CBR systems that are presently being used commercially. Each of the three commercial case studies highlights features that made CBR particularly suitable for the application. Moreover, the last case study describes a development methodology for implementing CBR systems. The paper concludes with a research agenda for CBR. A detailed categorized bibliography of CBR research is provided in a companion paper (Marir & Watson, 1994).
Is Big Data the Next Big Thing in Performance Measurement Systems?

This paper explores the relationship between big data and performance measurement systems. Generally, big data is associated to data that are produced in big velocity, variety, and volume. Companies nowadays are searching for ways to extract useful information from large amount of data. Nevertheless, big data requires advanced computational resources, statistical techniques, and data visualization techniques in order to store, process, and, in special, analyze all different kinds of data. The capability to create value from such high quantity of data is critical to get competitive advantages from the big data. In fact, big data is probably a new revolution in information management that can influence the way in which companies do their businesses. Consequently, the performance measurement system can also be affected. These systems are composed of a multidimensional set of performance measures used for planning, controlling, and improving business performance. Therefore, big data could contribute to different ways of using the performance measurement systems. Finally, this paper provides some insights into how big data influences the changes in performance measurement systems such as new kind of analytics, strategy challenge, and support to continuous improvement.
Your click decides your fate: Inferring Information Processing and Attrition Behavior from MOOC Video Clickstream Interactions

In this work, we explore video lecture interaction in Massive Open Online Courses (MOOCs), which is central to student learning experience on these educational platforms. As a research contribution, we operationalize video lecture clickstreams of students into cognitively plausible higher level behaviors, and construct a quantitative information processing index, which can aid instructors to better understand MOOC hurdles and reason about unsatisfactory learning outcomes. Our results illustrate how such a metric inspired by cognitive psychology can help answer critical questions regarding students’ engagement, their future click interactions and participation trajectories that lead to in-video & course dropouts. Implications for research and practice are discussed.
For better or for worse: neural systems supporting the cognitive down- and up-regulation of negative emotion

Functional neuroimaging studies examining the neural bases of the cognitive control of emotion have found increased prefrontal and decreased amygdala activation for the reduction or down-regulation of negative emotion. It is unknown, however, (1) whether the same neural systems underlie the enhancement or up-regulation of emotion, and (2) whether altering the nature of the regulatory strategy alters the neural systems mediating the regulation. To address these questions using functional magnetic resonance imaging (fMRI), participants up- and down-regulated negative emotion either by focusing internally on the self-relevance of aversive scenes or by focusing externally on alternative meanings for pictured actions and their situational contexts. Results indicated (1a) that both up- and down-regulating negative emotion recruited prefrontal and anterior cingulate regions implicated in cognitive control, (1b) that amygdala activation was modulated up or down in accord with the regulatory goal, and (1c) that up-regulation uniquely recruited regions of left rostromedial PFC implicated in the retrieval of emotion knowledge, whereas down-regulation uniquely recruited regions of right lateral and orbital PFC implicated in behavioral inhibition. Results also indicated that (2) self-focused regulation recruited medial prefrontal regions implicated in internally focused processing, whereas situation-focused regulation recruited lateral prefrontal regions implicated in externally focused processing. These data suggest that both common and distinct neural systems support various forms of reappraisal and that which particular prefrontal systems modulate the amygdala in different ways depends on the regulatory goal and strategy employed.
Development of Robotic Gloves for Hand Rehabilitation Post-Stroke

This paper presents the hardware and software developments that have been achieved and implemented in the robotic gloves for hand rehabilitation post-stroke. The practical results are shown that prove the functionalities of the robotic gloves in common operating conditions. This work focused on development of a lightweight and low-cost robotic glove that patients can wear and use to recover hand functionality. We developed some structures for the robotic glove, as exoskeleton and as soft robotic glove. The paper presents a comparison of these structures.