nils-herrmann/clean_scirepeval huggingface dataset:
Modulation of connectivity in visual pathways by attention: cortical interactions evaluated with structural equation modelling and fMRI.

Electrophysiological and neuroimaging studies have shown that attention to visual motion can increase the responsiveness of the motion-selective cortical area V5 and the posterior parietal cortex (PP). Increased or decreased activation in a cortical area is often attributed to attentional modulation of the cortical projections to that area. This leads to the notion that attention is associated with changes in connectivity. We have addressed attentional modulation of effective connectivity using functional magnetic resonance imaging (fMRI). Three subjects were scanned under identical stimulus conditions (visual motion) while varying only the attentional component of the task. Haemodynamic responses defined an occipito-parieto-frontal network, including the, primary visual cortex (V1), V5 and PR A structural equation model of the interactions among these dorsal visual pathway areas revealed increased connectivity between V5 and PP related to attention. On the basis of our analysis and the neuroanatomical pattern of projections from the prefrontal cortex to PP we attributed the source of modulatory influences, on the posterior visual pathway, to the prefrontal cortex (PFC). To test this hypothesis we included the PFC in our model as a 'modulator' of the pathway between V5 and PP, using interaction terms in the structural equation model. This analysis revealed a significant modulatory effect of prefrontal regions on V5 afferents to posterior parietal cortex.
SAD: web session anomaly detection based on parameter estimation

Web attacks are too numerous in numbers and serious in potential consequences for modern society to tolerate. Unfortunately, current generation signature-based intrusion detection systems (IDS) are inadequate, and security techniques such as firewalls or access control mechanisms do not work well when trying to secure web services. In this paper, we empirically demonstrate that the Bayesian parameter estimation method is effective in analyzing web logs and detecting anomalous sessions. When web attacks were simulated with Whisker software, Snort, a well-known IDS based on misuse detection, caught only slightly more than one third of web attacks. Our technique, session anomaly detection (SAD), on the other hand, detected nearly all such attacks without having to rely on attack signatures at all. SAD works by first developing normal usage profile and comparing the web logs, as they are generated, against the expected frequencies. Our research indicates that SAD has the potential of detecting previously unknown web attacks and that the proposed approach would play a key role in developing an integrated environment to provide secure and reliable web services. a 2004
The hitchhiker's guide to successful residential sensing deployments

Homes are rich with information about people's energy consumption, medical health, and personal or family functions. In this paper, we present our experiences deploying large-scale residential sensing systems in over 20 homes. Deploying small-scale systems in homes can be deceptively easy, but in our deployments we encountered a phase transition in which deployment effort increases dramatically as residential deployments scale up in terms of 1) the number of nodes, 2) the length of time, and 3) the number of houses. In this paper, we distill our experiences down to a set of guidelines and design principles to help future deployments avoid the potential pitfalls of large-scale sensing in homes.
Compact Circularly-Polarized Patch Antenna Loaded With Metamaterial Structures

A metamaterial-inspired low-profile patch antenna is proposed and studied for circularly-polarized (CP) radiation. The present antenna, which has a single-fed configuration, is loaded with the composite right/left-handed (CRLH) mushroom-like structures and a reactive impedance surface (RIS) for miniaturization purpose. The CP radiation is realized by exciting two orthogonally-polarized modes simultaneously which are located in the left-handed (LH) region. The detailed antenna radiation characteristics are examined and illustrated with both simulated and experimental results. The CP performance can be controlled in several different ways. This antenna exhibits an overall size of 0.177λ0 × 0.181λ0 × 0.025λ0 at 2.58 GHz and a radiation efficiency around 72%. Finally, based on the proposed CP patch antenna, a compact dual-band dual linearly-polarized patch antenna has also been designed and fabricated. Promising experimental results are observed.
CAD Tools for Creating Space-filing 3D Escher Tiles

We discuss the design and implementation of CAD tools for creating decorative solids that tile 3-space in a regular, isohedral manner. Starting with the simplest case of extruded 2D tilings, we describe geometric algorithms used for maintaining boundary representations of 3D tiles, including a Java implementation of an interactive constrained Delaunay triangulation library and a mesh-cutting algorithm used in layering extruded tiles to create more intricate designs. Finally, we demonstrate a CAD tool for creating 3D tilings that are derived from cubic lattices. The design process for these 3D tiles is more constrained, and hence more difficult, than in the 2D case, and it raises additional user interface issues.
New relationships between breast microcalcifications and cancer

Breast microcalcifications are key diagnostically significant radiological features for localisation of malignancy. This study explores the hypothesis that breast calcification composition is directly related to the local tissue pathological state.A total of 236 human breast calcifications from 110 patients were analysed by mid-Fouries transform infrared (FTIR) spectroscopy from three different pathology types (112 invasive carcinoma (IC), 64 in-situ carcinomas and 60 benign). The biochemical composition and the incorporation of carbonate into the hydroxyapatite lattice of the microcalcifications were studied by infrared microspectroscopy. This allowed the spectrally identified composition to be directly correlated with the histopathology grading of the surrounding tissue.The carbonate content of breast microcalcifications was shown to significantly decrease when progressing from benign to malignant disease. In this study, we report significant correlations (P<0.001) between microcalcification chemical composition (carbonate content and protein matrix : mineral ratios) and distinct pathology grades (benign, in-situ carcinoma and ICs). Furthermore, a significant correlation (P<0.001) was observed between carbonate concentrations and carcinoma in-situ sub-grades. Using the two measures of pathology-specific calcification composition (carbonate content and protein matrix : mineral ratios) as the inputs to a two-metric discriminant model sensitivities of 79, 84 and 90% and specificities of 98, 82 and 96% were achieved for benign, ductal carcinoma in situ and invasive malignancies, respectively.We present the first demonstration of a direct link between the chemical nature of microcalcifications and the grade of the pathological breast disease. This suggests that microcalcifications have a significant association with cancer progression, and could be used for future objective analytical classification of breast pathology. A simple two-metric model has been demonstrated, more complex spectral analysis may yeild greater discrimination performance. Furthermore there appears to be a sequential progression of calcification composition.
Boosting Named Entity Recognition with Neural Character Embeddings

Most state-of-the-art named entity recognition (NER) systems rely on handcrafted features and on the output of other NLP tasks such as part-of-speech (POS) tagging and text chunking. In this work we propose a language-independent NER system that uses automatically learned features only. Our approach is based on the CharWNN deep neural network, which uses word-level and character-level representations (embeddings) to perform sequential classification. We perform an extensive number of experiments using two annotated corpora in two different languages: HAREM I corpus, which contains texts in Portuguese; and the SPA CoNLL2002 corpus, which contains texts in Spanish. Our experimental results shade light on the contribution of neural character embeddings for NER. Moreover, we demonstrate that the same neural network which has been successfully applied to POS tagging can also achieve state-of-the-art results for language-independet NER, using the same hyperparameters, and without any handcrafted features. For the HAREM I corpus, CharWNN outperforms the state-of-the-art system by 7.9 points in the F1-score for the total scenario (ten NE classes), and by 7.2 points in the F1 for the selective scenario (five NE classes).
Self-supervised CNN for Unconstrained 3D Facial Performance Capture from an RGB-D Camera

We present a novel method for real-time 3D facial performance capture with consumer-level RGB-D sensors. Our capturing system is targeted at robust and stable 3D face capturing in the wild, in which the RGB-D facial data contain noise, imperfection and occlusion, and often exhibit high variability in motion, pose, expression and lighting conditions, thus posing great challenges. The technical contribution is a self-supervised deep learning framework, which is trained directly from raw RGB-D data. The key novelties include: (1) learning both the core tensor and the parameters for refining our parametric face model; (2) using vertex displacement and UV map for learning surface detail; (3) designing the loss function by incorporating temporal coherence and same identity constraints based on pairs of RGB-D images and utilizing sparse norms, in addition to the conventional terms for photo-consistency, feature similarity, regularization as well as geometry consistency; and (4) augmenting the training data set in new ways. The method is demonstrated in a live setup that runs in real-time on a smartphone and an RGB-D sensor. Extensive experiments show that our method is robust to severe occlusion, fast motion, large rotation, exaggerated facial expressions and diverse lighting.
Flexible Container-Based Computing Platform on Cloud for Scientific Workflows

Cloud computing is expected to be a promising solution for scientific computing. In this paper, we propose a flexible container-based computing platform to run scientific workflows on cloud. We integrate Galaxy, a popular biology workflow system, with four famous container cluster systems. Preliminary evaluation shows that container cluster systems introduce negligible performance overhead for data intensive scientific workflows, meanwhile, they are able to solve tool installation problem, guarantee reproducibility and improve resource utilization. Moreover, we implement four ways of using Docker, the most popular container tool, for our platform. Docker in Docker and Sibling Docker, which run everything within containers, both help scientists easily deploy our platform on any clouds in a few minutes.
A Meta-Analysis of Methodologies for Research in Knowledge Management, Organizational Learning and Organizational Memory: Five Years at HICSS

The Task Force on Organizational Memory presented a report at the Hawaii International Conference for System Sciences in January 1998. The report included perspectives on knowledge-oriented research, conceptual models for organizational memory, and research methodologies for researchers considering work in organizational memory. This paper builds on the ideas originally presented in the 1998 report by examining research presented at HICSS in the general areas of knowledge management, organizational memory and organizational learning in the five years since the original task force report.
Neural Networks: A Comprehensive Foundation

El profesor Haykin ha escrito un libro muy interesante, que ya lleva su segunda edición, lo cual es extrafio dentro de la gran cantidad de libros que se producen en la actualidad. Es fácil encontrar en la literatura contemporánea la constante referencia que se hace a este libro; sin embargo, el libro no es lo que el título indica, ya que no es un libro ortodoxo de las teorías y técnicas que son conocidas como redes neuronales (también conocidas como sistemas conexionistas o sistemas neurocomputacionales), tampoco es un libro que presente los fundamentos o bases teóricas de las redes neuronales. neuronales, así como los grandes modelos de esta área de investigación, como son los perceptrones y las redes RBFN (Radial-Basis Function Networks). La presentación de estos cuatro capítulos es excelente.
Functional connectivity in the motor cortex of resting human brain using echo-planar MRI.

An MRI time course of 512 echo-planar images (EPI) in resting human brain obtained every 250 ms reveals fluctuations in signal intensity in each pixel that have a physiologic origin. Regions of the sensorimotor cortex that were activated secondary to hand movement were identified using functional MRI methodology (FMRI). Time courses of low frequency (< 0.1 Hz) fluctuations in resting brain were observed to have a high degree of temporal correlation (P < 10(-3)) within these regions and also with time courses in several other regions that can be associated with motor function. It is concluded that correlation of low frequency fluctuations, which may arise from fluctuations in blood oxygenation or flow, is a manifestation of functional connectivity of the brain.
Semantically Smooth Knowledge Graph Embedding

This paper considers the problem of embedding Knowledge Graphs (KGs) consisting of entities and relations into lowdimensional vector spaces. Most of the existing methods perform this task based solely on observed facts. The only requirement is that the learned embeddings should be compatible within each individual fact. In this paper, aiming at further discovering the intrinsic geometric structure of the embedding space, we propose Semantically Smooth Embedding (SSE). The key idea of SSE is to take full advantage of additional semantic information and enforce the embedding space to be semantically smooth, i.e., entities belonging to the same semantic category will lie close to each other in the embedding space. Two manifold learning algorithms Laplacian Eigenmaps and Locally Linear Embedding are used to model the smoothness assumption. Both are formulated as geometrically based regularization terms to constrain the embedding task. We empirically evaluate SSE in two benchmark tasks of link prediction and triple classification, and achieve significant and consistent improvements over state-of-the-art methods. Furthermore, SSE is a general framework. The smoothness assumption can be imposed to a wide variety of embedding models, and it can also be constructed using other information besides entities’ semantic categories.
Probabilistic graphical models for semi-supervised traffic classification

Traffic classification using machine learning continues to be an active research area. The majority of work in this area uses off-the-shelf machine learning tools and treats them as black-box classifiers. This approach turns all the modelling complexity into a feature selection problem. In this paper, we build a problem-specific solution to the traffic classification problem by designing a custom probabilistic graphical model. Graphical models are a modular framework to design classifiers which incorporate domain-specific knowledge. More specifically, our solution introduces semi-supervised learning which means we learn from both labelled and unlabelled traffic flows. We show that our solution performs competitively compared to previous approaches while using less data and simpler features.
A compendium of RNA-binding motifs for decoding gene regulation

RNA-binding proteins are key regulators of gene expression, yet only a small fraction have been functionally characterized. Here we report a systematic analysis of the RNA motifs recognized by RNA-binding proteins, encompassing 205 distinct genes from 24 diverse eukaryotes. The sequence specificities of RNA-binding proteins display deep evolutionary conservation, and the recognition preferences for a large fraction of metazoan RNA-binding proteins can thus be inferred from their RNA-binding domain sequence. The motifs that we identify in vitro correlate well with in vivo RNA-binding data. Moreover, we can associate them with distinct functional roles in diverse types of post-transcriptional regulation, enabling new insights into the functions of RNA-binding proteins both in normal physiology and in human disease. These data provide an unprecedented overview of RNA-binding proteins and their targets, and constitute an invaluable resource for determining post-transcriptional regulatory mechanisms in eukaryotes.
Attention-aware Generalized Mean Pooling for Image Retrieval

It has been shown that image descriptors extracted by convolutional neural networks (CNNs) achieve remarkable results for retrieval problems. In this paper, we apply attention mechanism to CNN, which aims at enhancing more relevant features that correspond to important keypoints in the input image. The generated attention-aware features are then aggregated by the previous state-of-the-art generalized mean (GeM) pooling followed by normalization to produce a compact global descriptor, which can be efficiently compared to other image descriptors by the dot product. An extensive comparison of our proposed approach with state-of-the-art methods is performed on the new challenging ROxford5k and RParis6k retrieval benchmarks. Results indicate significant improvement over previous work. In particular, our attentionaware GeM (AGeM) descriptor outperforms state-of-the-art method on ROxford5k under the “Hard” evaluation protocal.
Prediction of cyberbullying incidents in a media-based social network

Cyberbullying is a major problem affecting more than half of all American teens. Prior work has largely focused on detecting cyberbullying after the fact. In this paper, we investigate the prediction of cyberbullying incidents in Instagram, a popular media-based social network. The novelty of this work is building a predictor that can anticipate the occurrence of cyberbullying incidents before they happen. The Instagram media-based social network is well-suited to such prediction since there is an initial posting of an image typically with an associated text caption, followed later by the text comments that form the basis of a specific cyberbullying incident. We extract several important features from the initial posting data for automated cyberbullying prediction, including profanity and linguistic content of the text caption, image content, as well as social graph parameters and temporal content behavior. Evaluations using a real-world Instagram dataset demonstrate that our method achieves high performance in predicting the occurrence of cyberbullying incidents.
Visual Analysis of MOOC Forums with iForum

provide great opportunities for students to interact with instructional staff as well as other students. Exploration of MOOC forum data can offer valuable insights for these staff to enhance the course and prepare the next release. However, it is challenging due to the large, complicated, and heterogeneous nature of relevant datasets, which contain multiple dynamically interacting objects such as users, posts, and threads, each one including multiple attributes. In this paper, we present a design study for developing an interactive visual analytics system, called iForum, that allows for effectively discovering and understanding temporal patterns in MOOC forums. The design study was conducted with three domain experts in an iterative manner over one year, including a MOOC instructor and two official teaching assistants. iForum offers a set of novel visualization designs for presenting the three interleaving aspects of MOOC forums (i.e., posts, users, and threads) at three different scales. To demonstrate the effectiveness and usefulness of iForum, we describe a case study involving field experts, in which they use iForum to investigate real MOOC forum data for a course on JAVA programming.
A soft computing-based approach for integrated training and rule extraction from artificial neural networks: DIFACONN-miner

Artificial neural network (ANN) is one of the most widely used techniques in classification data mining. Although ANNs can achieve very high classification accuracies, their explanation capability is very limited. Therefore one of the main challenges in using ANNs in data mining applications is to extract explicit knowledge from them. Based on this motivation, a novel approach is proposed in this paper for generating classification rules from feed forward type ANNs. Although there are several approaches in the literature for classification rule extraction from ANNs, the present approach is fundamentally different from them. In the previous studies, ANN training and rule extraction is generally performed independently in a sequential (hierarchical) manner. However, in the present study, training and rule extraction phases are integrated within a multiple objective evaluation framework for generating accurate classification rules directly. The proposed approach makes use of differential evolution algorithm for training and touring ant colony optimization algorithm for rule extracting. The proposed algorithm is named as DIFACONN-miner. Experimental study on the benchmark data sets and comparisons with some other classical and state-of-the art rule extraction algorithms has shown that the proposed approach has a big potential to discover more accurate and concise classification rules.
Process Mining and Fraud Detection

A case study on the theoretical and practical value of using process mining for the detection of fraudulent behavior in the procurement process  This thesis presents the results of a six month research period on process mining and fraud detection. This thesis aimed to answer the research question as to how process mining can be utilized in fraud detection and what the benefits of using process mining for fraud detection are. Based on a literature study it provides a discussion of the theory and application of process mining and its various aspects and techniques. Using both a literature study and an interview with a domain expert, the concepts of fraud and fraud detection are discussed. These results are combined with an analysis of existing case studies on the application of process mining and fraud detection to construct an initial setup of two case studies, in which process mining is applied to detect possible fraudulent behavior in the procurement process. Based on the experiences and results of these case studies, the 1+5+1 methodology is presented as a first step towards operationalizing principles with advice on how process mining techniques can be used in practice when trying to detect fraud. This thesis presents three conclusions: (1) process mining is a valuable addition to fraud detection, (2) using the 1+5+1 concept it was possible to detect indicators of possibly fraudulent behavior (3) the practical use of process mining for fraud detection is diminished by the poor performance of the current tools. The techniques and tools that do not suffer from performance issues are an addition, rather than a replacement, to regular data analysis techniques by providing either new, quicker, or more easily obtainable insights into the process and possible fraudulent behavior. iii Occam's Razor: " One should not increase, beyond what is necessary, the number of entities required to explain anything " iv Contents