File System Workload Analysis For Large Scientific Computing Applications
Parallel scientific applications require high-performance I/O support from underlying file systems. A comprehensive understanding of the expected workload is therefore essential for the design of high-performance parallel file systems. We re-examine the workload characteristics in parallel computing environments in the light of recent technology advances and new applications. We analyze application traces from a cluster with hundreds of nodes. On average, each application has only one or two typical request sizes. Large requests from several hundred kilobytes to several megabytes are very common. Although in some applications small requests account for more than 90% of all requests, almost all of the I/O data are transferred by large requests. All of these applications show bursty access patterns. More than 65% of write requests have inter-arrival times within one millisecond in most applications. By running the same benchmark on different file models, we also find that the write throughput of using an individual output file for each node exceeds that of using a shared file for all nodes by a factor of 5. This indicates that current file systems are not well optimized for file sharing.

title: Using MEMS-based storage to boost disk performance
abstract: Non-volatile storage technologies such as flash memory, magnetic RAM (MRAM), and MEMS-based storage are emerging as serious alternatives to disk drives. Among these, MEMS storage is predicted to be the least expensive and highest density, and at about 1 ms access times still considerably faster than hard disk drives. Like the other emerging non-volatile storage technologies, it is highly suitable for small mobile devices but it is expensive to replace hard drives entirely. Its non-volatility, dense storage, and high performance still make it an ideal candidate for the secondary storage subsystem. We examine the use of MEMS storage in the storage hierarchy and show that using a technique called MEMS caching disk, we can achieve 30-49% of the pure MEMS storage performance by using only a small amount (3% of the disk capacity) of MEMS storage in conjunction with a standard hard drive. The resulting system is ideally suited for commercial packaging with a small MEMS device included as part of a standard disk controller or paired with a disk.

title: OBFS: A File System for Object-Based Storage Devices
abstract: The object-based storage model, in which files are made up of o ne or more data objects stored on self-contained Object-Based Storage Devices (OSDs), is em erging as an architecture for distributed storage systems. The workload presented to the OSDs will be q uite different from that of generalpurpose file systems, yet many distributed file systems employ general-purpose file systems as their underlying file system. We present OBFS, a small and highly ef ficient file system designed for use in OSDs. Our experiments show that our user-level implement ation of OBFS outperforms Linux Ext2 and Ext3 by a factor of two or three, and while OBFS is 1/25 the size of XFS, it provides only slightly lower read performance and 10%‐40% higher write pe rformance.

title: Architecting Microprocessor Components in 3D Design Space
abstract: Interconnect is one of the major concerns in current and future microprocessor designs from both performance and power consumption perspective. The emergence of three-dimensional (3D) chip architectures, with its intrinsic capability to reduce the wire length, is one of the promising solutions to mitigate the interconnect related issues. In this paper we implement a few components of a microprocessor using custom design to show the potential performance and power benefits achievable through 3D integration under thermal constraints. We also introduce a standard cell based 3D design flow which leverages the commercial 2D design tools. Using this design flow we provide performance results of wide range of arithmetic units in 3D, thus introducing a fast method to analyze the performance benefits of 3D designs. In contrast to prior work, which mostly investigates single components of a processor, our work takes multiple components into consideration and the experimental results are promising in terms of delay and power reductions. Complex designs in 3D that have equivalent performance compared to a simple 2D designs is taken for IPC improvement analysis. An IPC improvement of 11% shown for a microprocessor implemented in 2-strata 3D technology

title: An Approximation for Minimum Multicast Route in Optical Networks with Nonsplitting Nodes
abstract: Consider the problem of computing the minimum-weight multicast route in an optical network with both nonsplitting and splitting nodes. This problem can be reduced to the minimum Hamiltonian path problem when all nodes are nonsplitting, and the Steiner minimum tree problem when all nodes are splitting. Therefore, the problem is NP-hard. Previously, the best known polynomial-time approximation has the performance ratio 3. In this paper, we present a new polynomial-time approximation with performance ratio of 1+ρ, where ρ is the best known approximation performance ratio for the Steiner minimum tree in graph and it has been known that ρ < 1.55.

title: Optimization scheme for sensor coverage scheduling with bandwidth constraints
abstract: Wireless Sensor Network has attracted a lot of attentions due to its broad applications in recent years and also introduces many challenges. Network lifetime is a critical issue in Wireless Sensor Networks. It is possible to extend network lifetime by organizing the sensors into a number of sensor covers. However, with the limited bandwidth, coverage breach (i.e, targets that are not covered) can occur if the number of available time-slots/channels is less than the number of sensors in a sensor cover. In this paper, we study a joint optimization problem in which the objective is to minimize the coverage breach as well as to maximize the network lifetime. We show a “trade-off” scheme by presenting two strongly related models, which aim to tradeoffs between the two conflicting objectives. The main approach of our models is organizing sensors into non-disjoint sets, which is different from the current most popular approach and can gain longer network lifetime as well as less coverage breach. We proposed two algorithms for the first model based on linear programming and greedy techniques, respectively. Then we transform these algorithms to solve the second model by revealing the strong connection between the models. Through numerical simulation, we showed the good performance of our algorithms and the pictures of the tradeoff scheme in variant scenarios, which coincide with theoretical analysis very well. It is also showed that our algorithms could obtain less breach rate than the one proposed in (Cheng et al. in INFOCOM’ 05, 2005).

title: Design Space Exploration for 3-D Cache
abstract: As technology scales, interconnects have become a major performance bottleneck and a major source of power consumption for sub-micro integrated circuit (IC) chips. One promising option to mitigate the interconnect challenges is 3D ICs, in which a stack of multiple device layers are put together on the same chip. In this paper, we explore the architectural design of cache memories using 3D circuits. We present a delay and energy model 3D cache delay-energy estimation tool (3D-Cacti) to explore different 3D design options of partitioning a cache. The tool allows partitioning of a cache across different device layers at various levels of granularity. The tool has been validated by comparing its results with those obtained from circuit simulation of custom 3D layouts. We also explore the effects of various cache partitioning parameters and 3D technology parameters on delay and energy to demonstrate the utility of the tool.

title: Non-unique probe selection and group testing
abstract: A minimization problem that has arisen from the study of non-unique probe selection with group testing technique is as follows: Given a binary matrix, find a d-disjunct submatrix with the minimum number of rows and the same number of columns. We show that when every probe hybridizes to at most two viruses, i.e., every row contains at most two 1s, this minimization is still MAX SNP-complete, but has a polynomial-time approximation with performance ratio 1+2/(d+1). This approximation is constructed based on an interesting result that the above minimization is polynomial-time solvable when every probe hybridizes to exactly two viruses.