A Discriminative Approach to Topic-Based Citation Recommendation
In this paper, we present a study of a novel problem, i.e. topic-based citation recommendation, which involves recommending papers to be referred to. Traditionally, this problem is usually treated as an engineering issue and dealt with using heuristics. This paper gives a formalization of topic-based citation recommendation and proposes a discriminative approach to this problem. Specifically, it proposes a two-layer Restricted Boltzmann Machine model, called RBM-CS, which can discover topic distributions of paper content and citation relationship simultaneously. Experimental results demonstrate that RBM-CS can significantly outperform baseline methods for citation recommendation.

title: htSNPer1.0: software for haplotype block partition and htSNPs selection
abstract: BackgroundThere is recently great interest in haplotype block structure and haplotype tagging SNPs (htSNPs) in the human genome for its implication on htSNPs-based association mapping strategy for complex disease. Different definitions have been used to characterize the haplotype block structure in the human genome, and several different performance criteria and algorithms have been suggested on htSNPs selection. heuristic algorithm, generalized branch-and-bound algorithm, is applied to the searching of minimal set of haplotype tagging SNPs (htSNPs) according to different htSNPs performance criteria. We develop a software htSNPer1.0 to implement the algorithm, and integrate three htSNPs performance criteria and four haplotype block definitions for haplotype block partitioning. It is a software with powerful Graphical User Interface (GUI), which can be used to characterize the haplotype block structure and select htSNPs in the candidate gene or interested genomic regions. It can find the global optimization with only a fraction of the computing time consumed by exhaustive searching algorithm.ConclusionhtSNPer1.0 allows molecular geneticists to perform haplotype block analysis and htSNPs selection using different definitions and performance criteria. The software is a powerful tool for those focusing on association mapping based on strategy of haplotype block and htSNPs.

title: Extraction and mining of an academic social network
abstract: This paper addresses several key issues in extraction and mining of an academic social network: 1) extraction of a researcher social network from the existing Web; 2) integration of the publications from existing digital libraries; 3) expertise search on a given topic; and 4) association search between researchers. We developed a social network system, called ArnetMiner, based on proposed methods to the above problems. In total, 448,470 researcher profiles and 981,599 publications were extracted/integrated after the system having been in operation for two years. The paper describes the architecture and main features of the system. It also briefly presents the experimental results of the proposed methods.

title: Topic Distributions over Links on Web
abstract: It is well known that Web users create links with different intentions. However, a key question, which is not well studied, is how to categorize the links and how to quantify the strength of the influence of a web page on another if there is a link between the two linked web pages. In this paper, we focus on the problem of link semantics analysis, and propose a novel supervised learning approach to build a model, based on a training link-labeled and link-weighted graph where a link-label represents the category of a link and a link-weight represents the influence of one web page on the other in a link. Based on the model built, we categorize links and quantify the influence of web pages on the others in a large graph in the same application domain. We discuss our proposed approach, namely Pairwise Restricted Boltzmann Machines (PRBMs), and conduct extensive experimental studies to demonstrate the effectiveness of our approach using large real datasets.

title: MicroRNA identification based on sequence and structure alignment
abstract: MicroRNAs (miRNA) are approximately 22 nt long non-coding RNAs that are derived from larger hairpin RNA precursors and play important regulatory roles in both animals and plants. The short length of the miRNA sequences and relatively low conservation of pre-miRNA sequences restrict the conventional sequence-alignment-based methods to finding only relatively close homologs. On the other hand, it has been reported that miRNA genes are more conserved in the secondary structure rather than in primary sequences. Therefore, secondary structural features should be more fully exploited in the homologue search for new miRNA genes.



In this paper, we present a novel genome-wide computational approach to detect miRNAs in animals based on both sequence and structure alignment. Experiments show this approach has higher sensitivity and comparable specificity than other reported homologue searching methods. We applied this method on Anopheles gambiae and detected 59 new miRNA genes.



This program is available at http://bioinfo.au.tsinghua.edu.cn/miralign.



Supplementary information is available at http://bioinfo.au.tsinghua.edu.cn/miralign/supplementary.htm.

title: ArnetMiner: An Expertise Oriented Search System for Web Community
abstract: Expertise Oriented Search aims at providing comprehensive analysis and mining for people from distributed sources. In this paper, we give an overview of the expertise oriented search system (ArnetMiner). The system addresses several key research issues in extraction and mining of a researcher social network. The system is in operation on the internet for more than one year and receives accesses from about 1,500 users per month. Feedbacks from users and system logs indicate that users consider the system can really help people to find and share information in the web community.

title: A Novel Approach Using PCA and SVM for Face Detection
abstract: Nowadays, face detection and recognition have gained importance in security and information access. In this paper, an efficient method of face detection based on principal components analysis (PCA) and support vector machine (SVM) is proposed. It firsly filter the face potential area using statistical feature which is generated by analyzing local histogram distribution. And then, SVM classifier is used to detect face feature in the test image, SVM has great performance in classification task. PCA is used to reduce dimension of sample data. After PCA transform, the feature vectors, which are used for training SVM classifier, are generated. Our tests in this paper are based on CMU face database. The experimental results demonstrate that the proposed method is encouraging with a successful detection rate.

title: Semantic Information Extraction of Video Based on Ontology and Inference
abstract: In this paper, a new ontology-based composite concept detection method is proposed, which adopts Bayesian network to construct the ontology and uses the inference rules to perform the composite concept detection providing the concrete concepts in a phrase of video. Furthermore, the probability instead of binary value is gained through the inference pattern of Bayesian network, which can obtain more precise results. The main contribution of this paper is that semantic concept ontology is constructed using Bayesian network and the constructed ontology represents the hierarchical relationship between the concepts which can be used for inference. The method narrows the influence of "Semantic Gap" in some extent and achieves good performance in composite concept detection.

title: On the Integration Frame of Collaborative Innovation Support System for Telecom Operators
abstract: As the industry value-chain getting complicated, collaborative innovation becomes an important competitive factor for telecom operators. However, collaborative innovation means more participators and greater uncertainty in the innovation procedure. As a result, collaborative innovations usually cost more in time and money, which could make the innovations lose or bring serious problems even when new services have been launched into the market. In this paper, the integration frame of collaborate innovation support system (CISS) is put forward. Firstly, the participants and resource flows in the collaborative innovation in telecom industry are analyzed. Based on that, the requirements and functions of CISS are summarized. The system should help to connect the necessary resources for innovations and implement process management in an efficient way. Secondly, the framework of CISS is designed, defining functional construction and information flows. Then the key technologies supporting CISS are illustrated. Functionally, the CISS should be a part of BSS/OSS (Business/Operating Support System), and the relationship between CISS and BSS/OSS is explained. Finally, the organizational and managerial supports for the system are discussed.

title: Building XML Data Warehouse Based on Frequent Patterns in User Queries
abstract: With the proliferation of XML-based data sources available across the Internet, it is increasingly important to provide users with a data warehouse of XML data sources to facilitate decision-making processes. Due to the extremely large amount of XML data available on web, unguided warehousing of XML data turns out to be highly costly and usually cannot well accommodate the users needs in XML data acquirement. In this paper, we propose an approach to materialize XML data warehouses based on frequent query patterns discovered from historical queries issued by users. The schemas of integrated XML documents in the warehouse are built using these frequent query patterns represented as Frequent Query Pattern Trees (FreqQPTs). Using hierarchical clustering technique, the integration approach in the data warehouse is flexible with respect to obtaining and maintaining XML documents. Experiments show that the overall processing of the same queries issued against the global schema become much efficient by using the XML data warehouse built than by directly searching the multiple data sources.

title: Anomaly detection in high-dimensional network data streams: A case study
abstract: In this paper, we study the problem of anomaly detection in high-dimensional network streams. We have developed a new technique, called Stream Projected Outlier deTector (SPOT), to deal with the problem of anomaly detection from high-dimensional data streams. We conduct a case study of SPOT in this paper by deploying it on 1999 KDD Intrusion Detection application. Innovative approaches for training data generation, anomaly classification and false positive reduction are proposed in this paper as well. Experimental results demonstrate that SPOT is effective in detecting anomalies from network data streams and outperforms existing anomaly detection methods.