Quality meshing of implicit solvation models of biomolecular structures
This paper describes a comprehensive approach to construct quality meshes for implicit solvation models of biomolecular structures starting from atomic resolution data in the Protein Data Bank (PDB). First, a smooth volumetric electron density map is constructed from atomic data using weighted Gaussian isotropic kernel functions and a two-level clustering technique. This enables the selection of a smooth implicit solvation surface approximation to the Lee-Richards molecular surface. Next, a modified dual contouring method is used to extract triangular meshes for the surface, and tetrahedral meshes for the volume inside or outside the molecule within a bounding sphere/box of influence. Finally, geometric flow techniques are used to improve the surface and volume mesh quality. Several examples are presented, including generated meshes for biomolecules that have been successfully used in finite element simulations involving solvation energetics and binding rate constants.

title: Spline Approximations of Real Algebraic Surfaces
abstract: We use a combination of both symbolic and numerical techniques to construct several degree boundedG0andG1continuous, piecewise spline approximations of real implicit algebraic surfaces for both computer graphics and geometric modeling. These approximations are based upon an adaptive triangulation (aG0planar approximation) of the real components of the algebraic surface, and include both singular points and singular curves on the surface. A curvilinear wireframe is also constructed using minimum bending energy, parametric curves with additionally normals varying along them. The spline approximations over the triangulation or curvilinear wireframe could be one of several forms: either low degree, implicit algebraic splines (triangular A-patches) or multivariate functional B-splines (B-patches) or standardized rational Bernstein?Bezier patches (RBB), or triangular rational B-Splines. The adaptive triangulation is additionally useful for a rapid display and animation of the implicit surface.

title: Hierarchical multiresolution reconstruction of shell surfaces
abstract: We present an adaptive, hierarchical Hh-multiresolution reconstruction algorithm to model shell surface objects from a matched pair of triangulated surfaces. Shell surfaces are an interval of contours of trivariate functions with prismatic support. In the H-direction, a hierarchical representation of the scaffold is constructed. For any adaptively extracted scaffold from the hierarchy, a sequence of functions in the h-direction (regularly subdivided mesh) is constructed so that their contours approximate the input shell to within a given error e. The shell surfaces can be made to capture sharp curve creases on the shell while being C1 smooth everywhere else. Using an interval of iso-contours of smooth trivariate spline functions, rather than a pair of inner and outer surface splines, one avoids the need for interference checks between the inner and outer surface boundaries.

title: Directional smoothing of triangular meshes
abstract: In this paper, we propose a so-called directional smoothing method based mean curvature flow. The selection of the diffusion direction is based on the descent of some energy functional. We show that the directional diffusion flow is volume-preserving. Based on the local directional diffusion flow, we present a feature-preserving smoothing method. Finally, we provide a series of examples to graphically demonstrate the quality of our results.

title: Nurbs Approximation of A-Splines and A-Patches
abstract: Given A-spline curves and A-patch surfaces that are implicitly defined on triangles and tetrahedra, we determine their NURBS representations. We provide a trimmed NURBS form for A-spline curves and a parametric tensor-product NURBS form for A-patch surfaces. We concentrate on cubic A-patches, providing a C1-continuous surface that interpolates a given triangulation together with surface normals at the vertices. In many cases we can generate cubic trimming curves that are rationally parametrizable on the triangular faces of the tetrahedra; for the remaining faces we resort to using quadratic curves, which are always rationally parametrizable, to approximate the cubic trimming curves.

title: Automatic reconstruction of surfaces and scalar fields from 3D scans
abstract: We present an efficient and uniform approach for the automatic reconstruction of surfaces of CAD (computer aided design) models and scalar fields defined on them, from an unorganized collection of scanned point data. A possible application is the rapid computer model reconstruction of an existing part or prototype from a three dimensional (3D) points scan of its surface. Color, texture or some scalar material property of the physical part, define natural scalar fields over the surface of the CAD model. Our reconstruction algorithm does not impose any convexity or differentiability restrictions on the surface of the original physical part or the scalar field function, except that it assumes that there is a sufficient sampling of the input point data to unambiguously reconstruct the CAD model. Compared to earlier methods our algorithm has the advantages of simplicity, efficiency and uniformity (both CAD model and scalar field reconstruction). The simplicity and efficiency of our approach is based on several novel uses of appropriate sub-structures (alpha shapes) of a three-dimensional Delaunay Triangulation, its dual the three-dimensional Voronoi diagram, and dual uses of trivariate Bernstein-Bezier forms. The boundary of the CAD model is modeled using implicit cubic Bernstein-Bezier patches, while the scalar field is reconstructed with functional cubic Bernstein-Bezier patches.

title: Error Analysis of Pure Rotation-Based Self-Calibration
abstract: Self-calibration using pure rotation is a well-known technique and has been shown to be a reliable means for recovering intrinsic camera parameters. However, in practice, it is virtually impossible to ensure that the camera motion for this type of self-calibration is a pure rotation. In this paper, we present an error analysis of recovered intrinsic camera parameters due to the presence of translation. We derived closed-form error expressions for a single pair of images with nondegenerate motion; for multiple rotations for which there are no closed-form solutions, analysis was done through repeated experiments. Among others, we show that translation-independent solutions do exist under certain practical conditions. Our analysis can be used to help choose the least error-prone approach (if multiple approaches exist) for a given set of conditions.

title: Statistical modeling and conceptualization of natural images
abstract: Multi-level annotation of images is a promising solution to enable semantic image retrieval by using various keywords at different semantic levels. In this paper, we propose a multi-level approach to interpret and annotate the semantics of natural images by using both the dominant image components and the relevant semantic image concepts. In contrast to the well-known image-based and region-based approaches, we use the concept-sensitive salient objects as the dominant image components to achieve automatic image annotation at the content level. By using the concept-sensitive salient objects for image content representation and feature extraction, a novel image classification technique is developed to achieve automatic image annotation at the concept level. To detect the concept-sensitive salient objects automatically, a set of detection functions are learned from the labeled image regions by using support vector machine (SVM) classifiers with an automatic scheme for searching the optimal model parameters. To generate the semantic image concepts, the finite mixture models are used to approximate the class distributions of the relevant concept-sensitive salient objects. An adaptive EM algorithm has been proposed to determine the optimal model structure and model parameters simultaneously. In addition, a large number of unlabeled samples have been integrated with a limited number of labeled samples to achieve more effective classifier training and knowledge discovery. We have also demonstrated that our algorithms are very effective to enable multi-level interpretation and annotation of natural images.

title: Multi-cue-based face and facial feature detection on video segments
abstract: An approach is presented to detect faces and facial features on a video segment based on multi-cues, including gray-level distribution, color, motion, templates, algebraic features and so on. Faces are first detected across the frames by using color segmentation, template matching and artificial neural network. A PCA-based (Principal Component Analysis) feature detector for still images is then used to detect facial features on each single frame until the resulting features of three adjacent frames, named as base frames, are consistent with each other. The features of frames neighboring the base frames are first detected by the still-image feature detector, then verified and corrected according to the smoothness constraint and the planar surface motion constraint. Experiments have been performed on video segments captured under different environments, and the presented method is proved to be robust and accurate over variable poses, ages and illumination conditions.

title: Efficient Fourier-Based Approach for Detecting Orientations and Occlusions in Epipolar Plane Images for 3D Scene Modeling
abstract: This paper presents a Fourier-based approach for automatically constructing a 3D panoramic model of a natural scene from a video sequence. The video sequences could be captured by an unstabilized camera mounted on a moving platform on a common road surface. As the input of the algorithms, “seamles” panoramic view images (PVIs) and epipolar plane images (EPIs) are generated after image stabilization if the camera is unstabilized. A novel panoramic EPI analysis method is proposed that combines the advantages of both PVIs and EPIs efficiently in three important steps: locus orientation detection in the Fourier frequency domain, motion boundary localization in the spatio-temporal domain, and occlusion/resolution recovery only at motion boundaries. The Fourier energy-based approaches in literature were usually for low-level local motion analysis and are therefore not accurate for 3D reconstruction and are also computationally expensive. Our panoramic EPI analysis approach is both accurate and efficient for 3D reconstruction. Examples of layered panoramic representations for large-scale 3D scenes from real world video sequences are given.

title: A Speaker Tracking Algorithm Based on Audio and Visual Information Fusion Using Particle Filter
abstract: Object tracking by sensor fusion has become an active research area in recent years, but how to fuse various information in an efficient and robust way is still an open problem. This paper presents a new algorithm for tracking speaker based on audio and visual information fusion using particle filter. A closed-loop architecture with reliability of each individual tracker is adopted, and a new method for data fusion and reliability adjustment is proposed. Experiments show the new algorithm is efficient in fusing information and robust to noise.