Re-ranking model based on document clusters
In this paper, we describe a model of information retrieval system that is based on a document re-ranking method using document clusters. In the first step, we retrieve documents based on the inverted-file method. Next, we analyze the retrieved documents using document clusters, and re-rank them. In this step, we use static clusters and dynamic cluster view. Consequently, we can produce clusters that are tailored to characteristics of the query. We focus on the merits of the inverted-file method and cluster analysis. In other words, we retrieve documents based on the inverted-file method and analyze all terms in document based on the cluster analysis. By these two steps, we can get the retrieved results which are made by the consideration of the context of all terms in a document as well as query terms. We will show that our method achieves significant improvements over the method based on similarity search ranking alone.

title: Knowledge Seeking Activities for Content Intelligence
abstract: This paper proposes a problem on the knowledge seeking activities compared with information seeking and knowledge discovery from text. A knowledge seeking activity is accomplished by a dynamic linkage of contents that is called “content intelligence.” An algorithm called “crossover” of knowledge units is proposed.

title: An ensemble of transliteration models for information retrieval
abstract: Transliteration is used to phonetically translate proper names and technical terms especially from languages in Roman alphabets to languages in non-Roman alphabets such as from English to Korean, Japanese, and Chinese. Because transliterations are usually representative index terms for documents, proper handling of the transliterations is important for an effective information retrieval system. However, there are limitations on handling transliterations depending on dictionary lookup, because transliterations are usually not registered in the dictionary. For this reason, many researchers have been trying to overcome the problem using machine transliteration. In this paper, we propose a method for improving machine transliteration using an ensemble of three different transliteration models. Because one transliteration model alone has limitation on reflecting all possible transliteration behaviors, several transliteration models should be complementary used in order to achieve a high-performance machine transliteration system. This paper describes a method about transliteration production using the several machine transliteration models and transliteration ranking with web data and relevance scores given by each transliteration model. We report evaluation results for our ensemble transliteration model and experimental results for its impact on IR effectiveness. Machine transliteration tests on English-to-Korean transliteration and English-to-Japanese transliteration show that our proposed method achieves 78-80% word accuracy. Information retrieval tests on KTSET and NTCIR-1 test collection show that our transliteration model can improve the performance of an information retrieval system about 10-34%.

title: A Comparison of Different Machine Transliteration Models
abstract: Machine transliteration is a method for automatically converting words in one language into phonetically equivalent ones in another language. Machine transliteration plays an important role in natural language applications such as information retrieval and machine translation, especially for handling proper nouns and technical terms. Four machine transliteration models - grapheme-based transliteration model, phoneme-based transliteration model, hybrid transliteration model, and correspondence-based transliteration model - have been proposed by several researchers. To date, however, there has been little research on a framework in which multiple transliteration models can operate simultaneously. Furthermore, there has been no comparison of the four models within the same framework and using the same data. We addressed these problems by 1) modeling the four models within the same framework, 2) comparing them under the same conditions, and 3) developing a way to improve machine transliteration through this comparison. Our comparison showed that the hybrid and correspondence-based models were the most effective and that the four models can be used in a complementary manner to improve machine transliteration performance.

title: PA-ZSA (Power-Aware Zero-Slack Algorithm): A Graph-Based Timing Analysis for Ultra-Low Power CMOS VLSI
abstract: This paper describes a slack budget distribution algorithm for ultra-low power CMOS logic circuits in a VLSI design environment. We introduce Power-Aware Zero-Slack Algorithm (PA-ZSA), which distributes the surplus time slacks into the most power-hungry modules. The PA-ZSA ensures that the total slack budget is near-maximal and the total power is minimal as a power-aware version of the well-known zero-slack algorithm (ZSA). Based on these time slacks, we have conducted the low-power optimization at gate level by using technology scaling technique. The experimental results show that our strategy reduces average 36% of the total (static and dynamic) power over the conventional slack budget distribution algorithms.

title: Energy-Aware Wireless Video Streaming
abstract: This paper presents a dynamic energy management policy for a wireless video streaming system, consisting of battery-powered client and server. The paper starts from the observation that the video quality in wireless streaming is a function of three factors: encoding aptitude of the server, decoding aptitude of the client, and the wireless channel. Based on this observation, the energy consumption of a wireless video streaming system is modeled and analyzed. Using the proposed model, the optimal energy assignment to each video frame is done such that the maximum system lifetime is achieved while satisfying a given minimum video quality requirement. Experimental results show that the proposed policy increases the system lifetime by 20%.

title: Dynamic voltage and frequency scaling based on workload decomposition
abstract: This paper presents a technique called "workload decomposition" in which the CPU workload is decomposed in two parts: on-chip and off-chip. The on-chip workload signifies the CPU clock cycles that are required to execute instructions in the CPU whereas the off-chip workload captures the number of external memory access clock cycles that are required to perform external memory transactions. When combined with a dynamic voltage and frequency scaling (DVFS) technique to minimize the energy consumption, this workload decomposition method results in higher energy savings. The workload decomposition itself is performed at run time based on statistics reported by a performance monitoring unit (PMU) without a need for application profiling or compiler support. We have implemented the proposed DVFS with workload decomposition technique on the BitsyX platform, an Intel PXA255-based platform manufactured by ADS Inc., and performed detailed energy measurements. These measurements show that, for a number of widely used software applications, a CPU energy saving of 80% can be achieved for memory-bound programs while satisfying the user-specified timing constraints.

title: Palindromes in SARS and Other Coronaviruses
abstract: With the identification of a novel coronavirus associated with the severe acute respiratory syndrome (SARS), computational analysis of its RNA genome sequence is expected to give useful clues to help elucidate the origin, evolution, and pathogenicity of the virus. In this paper, we study the collective counts of palindromes in the SARS genome along with all the completely sequenced coronaviruses. Based on a Markov-chain model for the genome sequence, the mean and standard deviation for the number of palindromes at or above a given length are derived. These theoretical results are complemented by extensive simulations to provide empirical estimates. Using a z score obtained from these mathematical and empirical means and standard deviations, we have observed that palindromes of length four are significantly underrepresented in all the coronaviruses in our data set. In contrast, length-six palindromes are significantly underrepresented only in the SARS coronavirus. Two other features are unique to the SARS sequence. First, there is a length-22 palindrome TCTTTAACAAGCTTGTTAAAGA spanning positions 25962-25983. Second, there are two repeating length-12 palindromes TTATAATTATAA spanning positions 22712-22723 and 22796-22807. Some further investigations into possible biological implications of these palindrome features are proposed.

title: PLATCOM: Current Status and Plan for the Next Stages
abstract: We have been developing a web-based system for comparing multiple genomes, PLATCOM, where users can choose genomes of their choice freely and perform analysis of the selected genomes with a suite of computational tools. PLATCOM is built on internal databases such as GenBank, COG, KEGG, and Pairwise Comparison Database (PCDB) that contains all pairwise comparisons (97,034 entries) of protein sequence files (.faa) and whole genome sequence files (.fna) of 312 replicons. Since combining multiple tools for sequence analysis requires a significant amount of programming work and knowledge on each tool, we also developed and incorporated high performance sequence data mining tools such as sequence clustering and neighborhood prediction. The next plan includes defining several data types for genome analysis and integrating system modules using data mining tools that operate on the genome data types. PLATCOM is available at http://platcom.informatics.indiana.edu.