An Elimination Method for Polynomial Systems
We present an elimination method for polynomial systems, in the form of three main algorithms. For any given system P,Q] of two sets of multivariate polynomials, one of the algorithms computes a sequence of triangular forms T1,?,Te and polynomial sets U1,?,Ue such that Zero(P/Q) = ?ei=1 Zero(Ti/Ui), where Zero(P/Q) denotes the set of common zeros of the polynomials in P which are not zeros of any polynomial in Q, and similarly for Zero(Ti/Ui). The two other algorithms compute the same zero decomposition but with nicer properties such as Zero(Ti/Ui) ? &0slash; for each i. One of them, for which the computed triangular systems Ti, Ui] possess the projection property, provides a quantifier elimination procedure for algebraically closed fields. For the other, the computed triangular forms Ti are irreducible. The relationship between our method and some existing elimination methods is explained. Experimental data for a set of test examples by a draft implementation of the method are provided, and show that the efficiency of our method is comparable with that of some well-known methods. A few encouraging examples are given in detail for illustration.

title: Automated Generation of Diagrams with Maple and Java
abstract: This note shows how to draw diagrams automatically from the predicate specification of a given set of geometric relations among a set of points in the plane. It is done first in Maple by translating the geometric relations into polynomial equations, decomposing the obtained system of polynomials into irreducible representative triangular sets, and finding an adequate numerical solution from each triangular set. A Java class coding the solution and the polynomials in each triangular set is generated, compiled, and then executed with the main Java programs to draw a diagram. The whole process combining symbolic elimination in Maple with numerical computation, graphic drawing, and letter labeling in Java is fully automatic. The drawn diagrams may be animated and fine-tuned by mouse click and dragging and saved as PostScript files. We present the drawing method, discuss some techniques of implementation, and give several sample diagrams drawn by our program.

title: A simple method for implicitizing rational curves and surfaces
abstract: This paper presents a simple method for converting rational parametric equations of curves and surfaces into implicit equations. The method proceeds via writing out the implicit polynomial F of estimated degree with indeterminate coefficients u i , substituting the rational expressions for the given parametric curve or surface into F to yield a rational expression g / h in the parameter s (or s and t ), equating the coefficients of g in terms of s (and t ) to 0 to generate a sparse, partially triangular system of linear equations in u i with constant coefficients, and finally solving the linear system for u i . If a nontrivial solution is found, then an implicit polynomial is obtained; otherwise, one repeats the same process, increasing the degree of F . Our experiments show that this simple method is efficient. It performs particularly well in the presence of base points and may detect the dependency of parameters incidentally.

title: GEOTHER: A Geometry Theorem Prover

title: On Wu's Method for Proving Constructive Geometric Theorems
abstract: In 1977 Wu Wen-tsiin discovered an efficient method for mechanical theorem proving. This method has been applied to prove and discover theorems in various kinds of geometries. Based on an extension of one of Wu's algorithmic procedures, the author implemented a prover CPS for proving so-called constructive geometric theorems, as well as a general theorem prover PS. Using this prover we proved more than one hundred non-trivial theorems and discovered also a number of interesting ones. This paper is a summarization of our early work, as a abbreviation of the chapter 2 from my Chinese doctoral dissertation.

title: Reasoning about Surfaces Using Differential Zero and Ideal Decomposition
abstract: This paper presents methods for zero and ideal decomposition of partial differential polynomial systems and the application of these methods and their implementations to deal with problems from the local theory of surfaces. We show how to prove known geometric theorems and to derive unknown relations automatically. In particular, an algebraic relation between the first and the second fundamental coefficients in a very compact form has been derived, which is more general and has smaller degree than a relation discovered previously by Z. Li. Moreover, we provide symmetric expressions for Li's relation and clarify his statement. Some examples of theorem proving and computational difficulties encountered in our experiments are also discussed.

title: Gene Selection Through Sensitivity Analysis of Support Vector Machines
abstract: We present a novel approach to gene selection for microarry data through the sensitivity analysis of support vector machines (SVMs). A new measurement (sensitivity) is defined to quantify the saliencies of individual features (genes) by analyzing the discriminative function in SVMs. Our feature selection strategy is first to select the features with higher sensitivities but meanwhile keep the remaining ones, and then refine the selected subset by tentatively substituting some part with fragments of the previously rejected features. The accuracy of our method is validated experimentally on the benchmark microarray datasets.

title: Identifying reasoning strategies in medical decision making: A methodological guide
abstract: Reasoning strategies are a key component in many medical tasks, including decision making, clinical problem solving, and understanding of medical texts. Identification of reasoning strategies used by clinicians may prove critical to the optimal design of decision support systems. This paper presents a formal method of cognitive-semantic analysis for the identification and characterization of reasoning strategies deployed in medical tasks and demonstrates its use through specific examples. Although semantic analysis was originally developed in the investigation of knowledge structures, it can also be applied to identify the reasoning and decision processes used by physicians and medical trainees in clinical tasks. Assumptions underlying the methods, as well as illustrations of their use in diagnostic explanation tasks, are presented. We discuss semantic analysis in the context of the current interests in developing medical ontologies and argue that a frame-based propositional analytic methodology can provide a systematic way of addressing the construction of such ontologies. Although the application of propositional analysis methods has some limitations, we show how such limitations are being addressed and present some examples of information tools that have been developed to ease, and make more systematic, the process of analysis.

title: SAT Based Predicate Abstraction for Hardware Verification
abstract: Predicate abstraction is an important technique for extracting compact finite state models from large or infinite state systems. Predicate abstraction uses decision procedures to compute a model which is amenable to model checking, and has been used successfully for software verification. Little work however has been done on applying predicate abstraction to large scale finite state systems, most notably, hardware, where the decision procedures are SAT solvers. We consider predicate abstraction for hardware in the framework of Counterexample-Guided Abstraction Refinement where in the course of verification, the abstract model has to be repeatedly refined. The goal of the refinement is to eliminate spurious behavior in the abstract model which is not present in the original model, and gives rise to false negatives (spurious counterexamples).

title: Protein Sequences Classification Using Modular RBF Neural Networks
abstract: A protein super-family consists of proteins which share amino acid sequence homology and which may therefore be functionally and structurally related. One of the benefits from this category grouping is that some hint of function may be deduced for individual members from information on other members of the family. Traditionally, two protein sequences are classified into the same class if they have high homology in terms of feature patterns extracted through sequence alignment algorithms. These algorithms compare an unseen protein sequence with all the identified protein sequences and returned the higher scored protein sequences. As the sizes of the protein sequence databases are very large, it is a very time consuming job to perform exhaustive comparison of existing protein sequence. Therefore, there is a need to build an improved classification system for effectively identifying protein sequences. This paper presents a modular neural classifier for protein sequences with improved classification criteria. The intelligent classification techniques described in this paper aims to enhance the performance of single neural classifiers based on a centralized information structure in terms of recognition rate, generalization and reliability. The architecture of the proposed model is a modular RBF neural network with a compensational combination at the transition output layer. The connection weights between the final output layer and the transition output layer are optimized by delta rule, which serve as an integrator of the local neural classifiers. To enhance the classification reliability, we present two heuristic rules to apply to decision-making. Two sets of protein sequences with ten classes of superfamilies downloaded from a public domain database, Protein Information Resources (PIR), are used in our simulation study. Experimental results with performance comparisons are carried out between single neural classifiers and the proposed modular neural classifier.

title: Automated Abstraction Refinement for Model Checking Large State Spaces Using SAT Based Conflict Analysis
abstract: We introduce a SAT based automatic abstraction refinement framework for model checking systems with several thousand state variables in the cone of influence of the specification. The abstract model is constructed by designating a large number of state variables as invisible. In contrast to previous work where invisible variables were treated as free inputs we describe a computationally more advantageous approach in which the abstract transition relation is approximated by pre-quantifying invisible variables during image computation. The abstract counterexamples obtained from model-checking the abstract model are symbolically simulated on the concrete system using a state-of-the-art SAT checker. If no concrete counterexample is found, a subset of the invisible variables is reintroduced into the system and the process is repeated. The main contribution of this paper are two new algorithms for identifying the relevant variables to be reintroduced. These algorithms monitor the SAT checking phase in order to analyze the impact of individual variables. Our method is complete for safety properties (AGp) in the sense that - performance permitting - a property is either verified or disproved by a concrete counterexample. Experimental results are given to demonstrate the power of our method on real-world designs.