Efficient discovery of XML data redundancies
As XML becomes widely used, dealing with redundancies in XML data has become an increasingly important issue. Redundantly stored information can lead not just to a higher data storage cost, but also to increased costs for data transfer and data manipulation. Furthermore, such data redundancies can lead to potential update anomalies, rendering the database inconsistent.One way to avoid data redundancies is to employ good schema design based on known functional dependencies. In fact, several recent studies have focused on defining the notion of XML Functional Dependencies (XML FDs) to capture XML data redundancies. We observe further that XML databases are often "casually designed" and XML FDs may not be determined in advance. Under such circumstances, discovering XML data redundancies (in terms of FDs) from the data itself becomes necessary and is an integral part of the schema refinement process.In this paper, we present the design and implementation of the first system, DiscoverXFD, for effcient discovery of XML data redundancies. It employs a novel XML data structure and introduces a new class of partition based algorithms. DiscoverXFD can not only be used for the previous definitions of XML functional dependencies, but also for a more comprehensive notion we develop in this paper, capable of detecting redundancies involving set elements while maintaining clear semantics. Experimental evaluations using real life and benchmark datasets demonstrate that our system is practical and scales well with increasing data size.

title: Constraint-based XML query rewriting for data integration
abstract: We study the problem of answering queries through a target schema, given a set of mappings between one or more source schemas and this target schema, and given that the data is at the sources. The schemas can be any combination of relational or XML schemas, and can be independently designed. In addition to the source-to-target mappings, we consider as part of the mapping scenario a set of target constraints specifying additional properties on the target schema. This becomes particularly important when integrating data from multiple data sources with overlapping data and when such constraints can express data merging rules at the target. We define the semantics of query answering in such an integration scenario, and design two novel algorithms, basic query rewrite and query resolution, to implement the semantics. The basic query rewrite algorithm reformulates target queries in terms of the source schemas, based on the mappings. The query resolution algorithm generates additional rewritings that merge related information from multiple sources and assemble a coherent view of the data, by incorporating target constraints. The algorithms are implemented and then evaluated using a comprehensive set of experiments based on both synthetic and real-life data integration scenarios.

title: Effective Integration of Protein Data through Better Data Modeling
abstract: Protein data, from sequence and structure to interaction, is being generated through many diverse methodologies; it is stored and reported in numerous forms and multiple places. The magnitude of the data limits researchers abilities to utilize all information generated. Effective integration of protein data can be accomplished through better data modeling. We demonstrate this through the MIPD project.

title: Schema-Free XQuery
abstract: The widespread adoption of XML holds out the promise that document structure can be exploited to specify precise database queries. However, the user may have only a limited knowledge of the XML structure, and hence may be unable to produce a correct XQuery, especially in the context of a heterogeneous information collection. The default is to use keyword-based search and we are all too familiar with how difficult it is to obtain precise answers by these means. We seek to address these problems by introducing the notion of Meaningful Lowest Common Ancestor Structure (MLCAS) for finding related nodes within an XML document. By automatically computing MLCAS and expanding ambiguous tag names, we add new functionality to XQuery and enable users to take full advantage of XQuery in querying XML data precisely and efficiently without requiring (perfect) knowledge of the document structure. Such a Schema-Free XQuery is potentially of value not just to casual users with partial knowledge of schema, but also to experts working in a data integration or data evolution context. In such a context, a schema-free query, once written, can be applied universally to multiple data sources that supply similar content under different schemas, and applied "forever" as these schemas evolve. Our experimental evaluation found that it was possible to express a wide variety of queries in a schema-free manner and have them return correct results over a broad diversity of schemas. Furthermore, the evaluation of a schema-free query is not expensive using a novel stack-based algorithm we develop for computing MLCAS: from 1 to 4 times the execution time of an equivalent schema-aware query.

title: Semantic Adaptation of Schema Mappings when Schemas Evolve
abstract: Schemas evolve over time to accommodate the changes in the information they represent. Such evolution causes invalidation of various artifacts depending on the schemas, such as schema mappings. In a heterogenous environment, where cooperation among data sources depends essentially upon them, schema mappings must be adapted to reflect schema evolution. In this study, we explore the mapping composition approach for addressing this mapping adaptation problem. We study the semantics of mapping composition in the context of mapping adaptation and compare our approach with the incremental approach of Velegrakis et al [21]. We show that our method is superior in terms of capturing the semantics of both the original mappings and the evolution. We design and implement a mapping adaptation system based on mapping composition as well as additional mapping pruning techniques that significantly speed up the adaptation. We conduct comprehensive experimental analysis and show that the composition approach is practical in various evolution scenarios. The mapping language that we consider is a nested relational extension of the second-order dependencies of Fagin et al . Our work can also be seen as an implementation of the mapping composition operator of the model management framework.

title: Querying structured text in an XML database
abstract: XML databases often contain documents comprising structured text. Therefore, it is important to integrate "information retrieval style" query evaluation, which is well-suited for natural language text, with standard "database style" query evaluation, which handles structured queries efficiently. Relevance scoring is central to information retrieval. In the case of XML, this operation becomes more complex because the data required for scoring could reside not directly in an element itself but also in its descendant elements.In this paper, we propose a bulk-algebra, TIX, and describe how it can be used as a basis for integrating information retrieval techniques into a standard pipelined database query evaluation engine. We develop new evaluation strategies essential to obtaining good performance, including a stack-based TermJoin algorithm for efficiently scoring composite elements. We report results from an extensive experimental evaluation, which show, among other things, that the new TermJoin access method outperforms a direct implementation of the same functionality using standard operators by a large factor.

title: Efficient and effective metasearch for text databases incorporating linkages among documents
abstract: Linkages among documents have a significant impact on the importance of documents, as it can be argued that important documents are pointed to by many documents or by other important documents. Metasearch engines can be used to facilitate ordinary users for retrieving information from multiple local sources (text databases). There is a search engine associated with each database. In a large-scale metasearch engine, the contents of each local database is represented by a representative. Each user query is evaluated against he set of representatives of all databases in order to determine the appropriate databases (search engines) to search (invoke) In previous word, the linkage information between documents has not been utilized in determining the appropriate databases to search. In this paper, such information is employed to determine the degree of relevance of a document with respect to a given query. Specifically, the importance (rank) of each document as determined by the linkages is integrated in each database representative to facilitate the selection of databases for each given query. We establish a necessary and sufficient condition to rank databases optimally, while incorporating the linkage information. A method is provided to estimate the desired quantities stated in the necessary and sufficient condition. The estimation method runs in time linearly proportional to the number of query terms. Experimental results are provided to demonstrate the high retrieval effectiveness of the method.

title: Determining Text Databases to Search in the Internet
abstract: Text data in the Internet can be partitioned into many databases naturally. Efficient retrieval of desired data can be achieved if we can accurately predict the usefulness of each database, because with such information, we only need to retrieve potentially useful documents from useful databases. In this paper, we propose two new methods for estimating the usefulness of text databases. For a given query, the usefulness of a text database in this paper is defined to be the number of documents in the database that are sufficiently similar to the query. Such a usefulness measure enables naive-users to make informed decision about which databases to search. We also consider the collection fusion problem. Because local databases may employ similarity functions that are different from that used by the global database, the threshold used by a local database to determine whether a document is potentially useful may be different from that used by the global database. We provide techniques that determine the best threshold for a given local database.

title: Understanding Human Behaviors Based on Eye-Head-Hand Coordination
abstract: Action recognition has traditionally focused on processing fixed camera observations while ignoring non-visual information. In this paper, we explore the dynamic properties of the movements of different body parts in natural tasks: eye, head and hand movements are quite tightly coupled with the ongoing task. In light of this, our method takes an agent-centered view and incorporates an extensive description of eye-head-hand coordination. With the ability to track the course of gaze and head movements, our approach uses gaze and head cues to detect agent-centered attention switches that can then be utilized to segment an action sequence into action units. Based on recognizing those action primitives, parallel hidden Markov models are applied to model and integrate the probabilistic sequences of the action units of different body parts. An experimental system is built for recognizing human behaviors in three natural tasks: "unscrewing a jar", "stapling a letter" and "pouring water", which demonstrates the effectiveness of the approach.

title: Personalized Web search for improving retrieval effectiveness
abstract: Current Web search engines are built to serve all users, independent of the special needs of any individual user. Personalization of Web search is to carry out retrieval for each user incorporating his/her interests. We propose a novel technique to learn user profiles from users' search histories. The user profiles are then used to improve retrieval effectiveness in Web search. A user profile and a general profile are learned from the user's search history and a category hierarchy, respectively. These two profiles are combined to map a user query into a set of categories which represent the user's search intention and serve as a context to disambiguate the words in the user's query. Web search is conducted based on both the user query and the set of categories. Several profile learning and category mapping algorithms and a fusion algorithm are provided and evaluated. Experimental results indicate that our technique to personalize Web search is both effective and efficient.

title: A Methodology to Retrieve Text Documents from Multiple Databases
abstract: This paper presents a methodology for finding the n most similar documents across multiple text databases for any given query and for any positive integer n. This methodology consists of two steps. First, the contents of databases are indicated approximately by database representatives. Databases are ranked using their representatives with respect to the given query. We provide a necessary and sufficient condition to rank the databases optimally. In order to satisfy this condition, we provide three estimation methods. One estimation method is intended for short queries; the other two are for all queries. Second, we provide an algorithm, OptDocRetrv, to retrieve documents from the databases according to their rank and in a particular way. We show that if the databases containing the n most similar documents for a given query are ranked ahead of other databases, our methodology will guarantee the retrieval of the n most similar documents for the query. When the number of databases is large, we propose to organize database representatives into a hierarchy and employ a best-search algorithm to search the hierarchy. It is shown that the effectiveness of the best-search algorithm is the same as that of evaluating the user query against all database representatives.