GraphScape: integrated multivariate network visualization
In this paper, we introduce a new method, GraphScape, to visualize multivariate networks, i.e., graphs with multivariate data associated with their nodes. GraphScape adopts a landscape metaphor with network structure displayed on a 2D plane and the surface height in the third dimension represents node attribute. More than one attribute can be visualized simultaneously by using multiple surfaces. In addition, GraphScape can be easily combined with existing methods to further increase the total number of attributes visualized. One of the major goals of GraphScape is to reveal multivariate graph clustering, which is based on both network structure and node attributes. This is achieved by a new layout algorithm and an innovative way of constructing attribute surface, which also allows visual clustering at different scales through interaction. A simplified attribute surface model is also proposed to reduce computation requirement when visualizing large networks. GraphScape is applied to networks of three different size (20, 100, and 1500) to demonstrate its effectiveness.

title: Workshop Organizers' Message
abstract: International Workshop on Privacy-Preserving Data Analysis (PPDA) 2009 took place at Brisbane, Australia on 21st April, 2009. There were two sessions for this workshop with 2 paper presentations in the first session and 3 presentations in the second session. 
 
With the advancement of information technology and declining hardware price, organizations and companies are able to collect large amount of personal data. Moreover, advanced data analysis and mining techniques have been proposed to derived patterns hidden in data. However, the increasing power in data processing and analysis also raises concerns over the proper usage of personal information. Without proper treatment of the threat of sensitive information leakage, organizations would be reluctant to disclose their data even when there may be great potential gains from the data exploration. Therefore research in the area of privacy preservation is deemed important for both theoretical and practical reasons. PPDA 2009 was held in conjunction with DASFAA 2009 conference, and aims to bring together researchers in different fields related to privacy preserving data analysis and to provide a forum where researchers and practitioners can share and exchange their knowledge and experiences.

title: Biomedical Information Visualization
abstract: The ongoing developments in the fields of molecular biology, genetics, and medical sciences have recently generated an explosion of information collected from living organisms. For the scientist who analyzes these huge amounts of data, information visualization can be a very useful tool.

title: A Multiresolution Terrain Model for Efficient Visualization Query Processing
abstract: Multiresolution triangular mesh (MTM) models are widely used to improve the performance of large terrain visualization by replacing the original model with a simplified one. MTM models, which consist of both original and simplified data, are commonly stored in spatial database systems due to their size. The relatively slow access speed of disks makes data retrieval the bottleneck of such terrain visualization systems. Existing spatial access methods proposed to address this problem rely on main-memory MTM models, which leads to significant overhead during query processing. In this paper, we approach the problem from a new perspective and propose a novel MTM called direct mesh that is designed specifically for secondary storage. It supports available indexing methods natively and requires no modification to MTM structure. Experiment results, which are based on two real-world data sets, show an average performance improvement of 5-10 times over the existing methods

title: Seeing more than the graph: evaluation of multivariate graph visualization methods
abstract: Many real-world networks are multivariate, i.e., they have attributes associated with nodes and/or edges. Examples include social networks whose nodes represent people and edges represent relationships. There is usually information about each person (such as name, age, and gender) and the relationship (such type, duration, and strength). Besides common graph analysis tasks (such as identifying the most influential or structurally important nodes), there are more complex analyses for multivariate networks. One of these is the multivariate graph clustering, i.e., identifying clusters formed by nodes that have similar attributes and are close to each other in terms of graph distance. For instance, in social network analysis, it is interesting to sociologists whether or not people with similar characteristics (node attributes) are also connected to each other. Currently there are very few visualization methods available for such analysis.
 Graph and multivariate visualization have been well studied separately in the literature. Herman et al. summarized the recent work on graph visualization , and Wong and Bergeron covered the development in multivariate visualization . However, there is relatively less work available on multivariate network visualization. Two types of approaches are commonly used. The first one is the mapping approach, which maps attributes to visual elements of a node or edge. A simple example is to map one attribute to node size and another to node color . A more advanced mapping approach uses glyphs to represent node or edge attributes. One such example is to use the length and width of a rectangle node glyph to represent two node attributes . The second one is the 2.5D approach: it uses the third dimension to present the multivariate information, while the graph is shown on a 2D plane. Examples include the recently proposed "GraphScape" , which adopts a landscape metaphor: each attribute is represented by a two-and-a-half- dimensional surface, whose height indicates its value.
 Each approach has its strength and weakness. The mapping approach is effective of showing numerical value using visual element such as size, but it can be difficult to compare the value of attributes represented by different elements such as size and color. The problem is alleviated by a carefully designed glyph, but visual complexity increases quickly as the number of attributes that a glyph needs to represent grows. The 2.5D approach is good at showing the distribution of attribute values over the network, but the attribute surface could introduce occlusion and affect the visibility of underlying network.
 In this paper, we present a study evaluating the effectiveness of these two approaches for different analysis tasks. We compare the performance of mapping and 2.5D approach in a controlled lab environment. We included both simple tasks (such as identifying nodes with the largest attribute value) and complex tasks (such as multivariate graph clustering). The performance is measured both in terms of accuracy and completion time. The results indicate that statistically mapping approach performs better for the simple tasks, while the 2.5D approach is favored in the complex task. The outcomes from this study provide some guidelines for the design of effective multivariate graph visualization for different analysis tasks.

title: Multiresolution Spatial Databases: Making Web-Based Spatial Applications Faster
abstract: Spatial data has now been used extensively in the Web environment, providing online customized maps and supporting map-based applications. The full potential of Web-based spatial applications, however, has yet to be achieved due to performance issues related to the large sizes and high complexity of spatial data. In this paper, we introduce a multiresolution approach to spatial data management and query processing such that the database server can choose spatial data at the right resolution level for different Web applications. One highly desirable property of the proposed approach is that the server-side processing cost and network traffic can be reduced when the level of resolution required by applications are low. Another advantage is that our approach pushes complex multiresolution structures and algorithms into the spatial database engine. That is, the developer of spatial Web applications needs not to be concerned with such complexity. This paper explains the basic idea, technical feasibility and applications of multiresolution spatial databases.

title: Monitoring with behavior view diagrams for debugging
abstract: UML sequence diagrams are widely used during requirements analysis and design for specifying the expected message exchanges among a set of objects in various scenarios for the program to perform a certain task. In this paper, we present the behavior view diagrams, a type of extended sequence diagrams, to facilitate execution monitoring during debugging. Using a behavior view diagram, software developers can precisely specify the runtime objects whose behaviors will be monitored during debugging. Software developers can also specify the important message exchanges to be observed among these objects during the progress of various scenarios, and may further define the monitoring actions to be performed for inspecting the program state when a message exchange is observed. We also present a debugger that can automatically monitor the program execution using the information specified in a behavior view diagram. Through this monitoring, the debugger can not only check whether the scenarios are progressed as intended, but also check whether the actions performed by the program have the the desired effects on the program states. Therefore, it will be useful for detecting and localizing bugs.

title: A simple and stable feature-preserving smoothing method for contours-based reconstructed meshes
abstract: In this paper, we develop a new feature preserving smoothing method for the irregular and coarse meshes reconstructed from 2D contours. To make the feature detecting robust, a new detecting algorithm using the continuity among adjacent contours is proposed. Then the original mesh is subdivided adaptively according to the detected geometric features and smoothed with isotropic method. With the help of that, our algorithm obtains not only the feature-preserving result of anisotropic methods but also the simple and stable process of isotropic ones. After smoothing, the resolution of mesh can be resumed by moving the vertices in the original mesh to the positions of their corresponding vertices in the smoothed adaptive mesh. For smoothing of contours-based reconstructed meshes, experimental results show that our method can smooth the meshes satisfactorily and preserve their geometric features much better than other implemented methods.

title: Design and Integration of a Telerobotic System for Minimally Invasive Surgery of the Throat
abstract: In this paper we present the clinical motivation, design specifications, kinematics, statics, and actuation compensation for a newly constructed telerobotic system for Minimally Invasive Surgery (MIS) of the throat. A hybrid dual-arm telesurgical slave, with 20 joint-space Degrees-of-Freedom (DoFs), is used in this telerobotic system to provide the necessary dexterity in deep surgical fields such as the throat. The telerobotic slave uses novel continuum robots that use multiple super-elastic backbones for actuation and structural integrity. We present the kinematics of the telesurgical slave and methods for actuation compensation to cancel the effects of backlash, friction, and flexibility of the actuation lines. A method for actuation compensation is presented in order to overcome uncertainties of modeling, friction, and backlash. This method uses a tiered hierarchy of two novel approaches of actuation compensation for remotely actuated snake-like robots. The tiered approach for actuation compensation uses compensation in both joint space and configuration space of the continuum robots. These hybrid actuation compensation schemes use intrinsic model information and external data through a recursive linear estimation algorithm and involve compensation using configuration space and joint space variables. Experimental results validate the ability of our integrated telemanipulation system through experiments of suturing and knot tying in confined spaces.

title: Quality encoding for tetrahedral mesh optimization
abstract: We define quality differential coordinates (QDC) for per-vertex encoding of the quality of a tetrahedral mesh. QDC measures the deviation of a mesh vertex from a position which maximizes the combined quality of the set of tetrahedra incident at that vertex. Our formulation allows the incorporation of different choices of element quality metrics into QDC construction to penalize badly shaped and inverted tetrahedra. We develop an algorithm for tetrahedral mesh optimization through energy minimization driven by QDC. The variational problem is solved efficiently and robustly using gradient flow based on a stable semi-implicit integration scheme. To ensure quality boundary of the resulting tetrahedral mesh, we propose a harmonic-guided optimization scheme which leads to consistent handling of both the interior and boundary tetrahedra.

title: Debugging object-oriented programs with behavior views
abstract: A complex software system may perform many program tasks during execution to provide the required functionalities. To detect and localize bugs related to the implementation of these tasks, the software developers must be able to monitor the progress of the tasks during execution and check whether the actions for these tasks have been performed correctly. This paper presents a debugger to facilitate this monitoring. The debugger introduces a new kind of abstraction, the behavior views, that can be used to specify how the actions for a program task are expected to occur in various scenarios. Enhanced with statements that can check properties at various steps during the progress of the task, a behavior view can be used to monitor whether the actions for the tasks have been performed at the right time, on the right set of data, and with the right effects on the program states. Our initial case study indicates that the debugger can be useful for localizing bugs.