Improved construction for pooling design
Pooling design is a mathematical tool with many applications in molecular biology, specially to reduce the number of tests for DNA library screening. In this note, we study construction of pooling design and present an improvement to a recent new construction given by Du et al. ( 2006).

title: A Real-Time Network Traffic Profiling System
abstract: This paper presents the design and implementation of a real-time behavior profiling system for high-speed Internet links. The profiling system uses flow-level information from continuous packet or flow monitoring systems, and uses data mining and information-theoretic techniques to automatically discover significant events based on the communication patterns of end-hosts. We demonstrate the operational feasibility of the system by implementing it and performing extensive benchmarking of CPU and memory costs using a variety of packet traces from OC-48 links in an Internet backbone network. To improve the robustness of this system against sudden traffic surges such as those caused by denial of service attacks or worm outbreaks, we propose a simple yet effective filtering algorithm. The proposed algorithm successfully reduces the CPU and memory cost while maintaining high profiling accuracy.

title: Design Space Exploration for 3-D Cache
abstract: As technology scales, interconnects have become a major performance bottleneck and a major source of power consumption for sub-micro integrated circuit (IC) chips. One promising option to mitigate the interconnect challenges is 3D ICs, in which a stack of multiple device layers are put together on the same chip. In this paper, we explore the architectural design of cache memories using 3D circuits. We present a delay and energy model 3D cache delay-energy estimation tool (3D-Cacti) to explore different 3D design options of partitioning a cache. The tool allows partitioning of a cache across different device layers at various levels of granularity. The tool has been validated by comparing its results with those obtained from circuit simulation of custom 3D layouts. We also explore the effects of various cache partitioning parameters and 3D technology parameters on delay and energy to demonstrate the utility of the tool.

title: Architecting Microprocessor Components in 3D Design Space
abstract: Interconnect is one of the major concerns in current and future microprocessor designs from both performance and power consumption perspective. The emergence of three-dimensional (3D) chip architectures, with its intrinsic capability to reduce the wire length, is one of the promising solutions to mitigate the interconnect related issues. In this paper we implement a few components of a microprocessor using custom design to show the potential performance and power benefits achievable through 3D integration under thermal constraints. We also introduce a standard cell based 3D design flow which leverages the commercial 2D design tools. Using this design flow we provide performance results of wide range of arithmetic units in 3D, thus introducing a fast method to analyze the performance benefits of 3D designs. In contrast to prior work, which mostly investigates single components of a processor, our work takes multiple components into consideration and the experimental results are promising in terms of delay and power reductions. Complex designs in 3D that have equivalent performance compared to a simple 2D designs is taken for IPC improvement analysis. An IPC improvement of 11% shown for a microprocessor implemented in 2-strata 3D technology

title: Optimal topology exploration for application-specific 3D architectures
abstract: As technology scales, increasing interconnect costs make it necessary to consider alternate ways of building integrated circuits. One promising option along this direction is 3D architectures where a stack of multiple device layers, with direct vertical tunneling through them, are put together on the same chip. In this paper, we explore how processor cores and storage blocks can be placed in a 3D architecture to minimize data access costs under temperature constraints. This process is referred to as the topology exploration. Using integer linear programming, we compare the best 2D placement with the best 3D placement, and show through experiments with both single-core and multicore systems that the 3D placement generates much better results (in terms of data access costs) under the same temperature bounds. We also discuss the tradeoffs between temperature constraint and data access costs

title: OBFS: A File System for Object-Based Storage Devices
abstract: The object-based storage model, in which files are made up of o ne or more data objects stored on self-contained Object-Based Storage Devices (OSDs), is em erging as an architecture for distributed storage systems. The workload presented to the OSDs will be q uite different from that of generalpurpose file systems, yet many distributed file systems employ general-purpose file systems as their underlying file system. We present OBFS, a small and highly ef ficient file system designed for use in OSDs. Our experiments show that our user-level implement ation of OBFS outperforms Linux Ext2 and Ext3 by a factor of two or three, and while OBFS is 1/25 the size of XFS, it provides only slightly lower read performance and 10%‐40% higher write pe rformance.

title: Variation-aware task allocation and scheduling for MPSoC
abstract: As technology scales, the delay uncertainty caused by process variations has become increasingly pronounced in deep submicron designs. As a result, a paradigm shift from deterministic to statistical design methodology at all levels of the design hierarchy is inevitable . In this paper, we propose a variation-aware task allocation and scheduling algorithm for Multiprocessor System-on-Chip (MPSoC) architectures to mitigate the impact of parameter variations. A new design metric, called performance yield and defined as the probability of the assigned schedule meeting the predefined performance constraints, is used to guide the task allocation and scheduling procedure. An efficient yield computation method for task scheduling complements and significantly improves the effectiveness of the proposed variation-aware scheduling algorithm. Experimental results show that our variation-aware scheduler achieves significant yield improvements. On average, 45% and 34% yield improvements over worst-case and nominal-case deterministic schedulers, respectively, can be obtained across the benchmarks by using the proposed variation-aware scheduler.